lowQualScore : 11111 1 111 1 1 1 222222222222 1111 1 444444444444444444 11 1 1
lowQualScore : 2 2 6 55 77 00000 777 4 2 555 3 5 4 2 3 5 3 5 4 222222222222 0000 0 3 3 7 1 0 2 0 1 3 444444444444444444 0 8 6 4 4 55 777 55 4 3 5
lowQualScore : . . . .. .. ..... ... . . ... . . . . . . . . . ............ .... . . . . . . . . . . .................. . . . . . .. ... .. . . .
lowQualScore : 7 7 0 55 55 00000 000 5 6 222 3 0 2 0 7 3 7 0 7 444444444444 6666 4 4 4 8 6 7 9 8 0 1 999999999999999999 2 2 0 3 3 88 888 44 4 9 5
consensus : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAA---N--AT-TTCAACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTA-GAATCG-CGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAA-CCAGAGCGC---TCGG-GATATCTCTGAGCGCTCGCATTATTGAACGCAC
Reference ( gi|1 ) : GAGGCACATCCAGTAAA--TCGGGCATT-----TGGT---CAAGCGACTGTTAGGAATAATATTTGTTAGCTGAATGCTTGTGAGCACCCGCTTATAATTCCAGATGGTGTCAATCAACAACAAA---G--AT-TACAACA----ACTTGTAACATCGGATGCCATCTTGGAAATCTTGGCGAAACACCTATGGAGCA-AAATTA-CGCACGTTTGCAAGCACTCACATGGGTGCCTGCATTCAAAA-TCAGAGCGC---TAAG-GATATCTCTGCGCGATCGCATTATTGAACGCAC
gi|5 : GAGGCACATTCAGTAAA--TTGGGTGCT-----TGTT---TGAG----TGCCAGGAATATTATTGGTTAGTTGAATGATTGCAAACACCTGTTCATAATTCAAGATGGTATAAATCAACAACAAA---G--AT-TTCAACA----ACTTGTAACATTGGACACCATCTTGGAAATCTTGGCGAAACACCTACCCTGTA-GAATCG-GGC-CACTTGCAAGCACT
gi|9 : GAGGCGCGATCAGTAAAAGTCGGGCGCT-----TGGT---CGAGCTCCTGCCGGGAATATTGTCGGTTAGTTGAACGCTTGCGAGCGCCTGCTCATATTTCAAGATGAGGTCAATCAACAACAAA---T--AT-TTCAACA----AC-----ATATC---------------AATCTTGACGAAACACCTAt
gi|12 : GAGACGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGTCGGGAATAGTATTGGTTAGTTAAACGCTTGCGAGTGCCCGCCTA-AATTCACGATCGCATCA---AACAACAAA---G--AT-T
gi|15 : cgGAGGCGTGTTCAGTAAA--TCGGGCGCT-----TTGT---CGAGCGCCTGCTTTGAATAGTATTGGTAAGTTGAACGCTTGTACGCGCCTGCTCATAATTCAAGATt
gi|3 : aAGGCGCGTTCAGTAAA--TCTGGCGCT-----TGGT---TGAGCGCCTGTCGGGAACATTATTGGTCAGTTGAACGATTGCGAGCGCCTGCTCATAATTTAAGATGGCGTCAATCAACAACAAA---A--ATGT----CA----ACTTGTAACAGCGG---TCGTC------ACCTTGGT-AAACA----TGGC-CA-AA-------CACCTAT-CGAG--------TGGGCGCCTGTGTTCGGAA-TCAGACTGC---TTGG-GATATCTCTTAGCGCTCGCATTTTTGAACGC
gi|14 : AGACACGTTCAGTGAA--CCGAGCGCT-----TGGT---CGAGCGACTGCCGGGAATATTCCTGGTTA-CTGAACGCTTGCAAGCGCCCGCTCATAACTCAAAATGGCGTTAATCAACAcc
gi|13 : taAAGCGTATTCTGTAAA--ACGAGCACTAAATATGGT---CAAGCACCCGCCGAGAATATTATTGGTTAGTTGAATGCTTGTGAGCGCCCACTTATAATTCAACATGGTGTCAATCAATAt
gi|4 : aaAGGCGTGTTCGGTAAA--TCGTGCGTT-----TGGTGGTTGAGCGCCTCCC-GGAATATTATTGGTTAGTTGA---------------CGC--ATAA---AAGATGGCGTCAATCAACAAAAAA---T--AT-TTCAACA----ATTTATAAAATCGGACGCCGTCTTTGAAATCTTGG
gi|17 : AGGCGCGTTCAGTAAA--TCGGGCGCT-----TTAT---CGAGCGCCTGTgtaaagatggcgtcaaccaacaaaaaagatttcaacaatttataaaatcggacgccgtcttcgaaatcttggctaa
gi|2 : aAGCAAA--TCGTGCACT-----TGGT---CGAGCGCCTGCCGGTAATAGTATTGGTAAGTTGAATGCTTGCGAGCGCCCGGTCATAATTCAAGAT-----CAATTA----CAAA---T--TT-T----CA----ACTTGTAACATCGGACGCCATCTTAAAAATCTTGGCGAACAACTTATAGAGCA-GA--TAGTGCGCGCTTACAAGCACTCACGTGGGCGCCTGTGTTCAGTA-TCAGAGCGC---TCGG-GATACATCTGAGCGCTCGCATTATTGAACGCAcgg
gi|6 : ggggcgtgttATGGCGTCAATCAAAAAAAAA---G--AT-TTTAACA----ACATATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAACACCCATCGAGAA-GAATCG-CGCGCGCTTGCAAGCATTTACGTTGGCGCCTACGTTCAGAA-CTAGAGGGC---TCGG-GATATCTCTGAGCGCTCGCATTATT--ATGCAC
gi|7 : TTAATCAACGATAAATCTGTCATATAAAGCACCACACTT-T--CATCGGACGCCAACTTGAAAATCTTGGCGAAATACTTATCGGGTAGAAAT----------------GCACTCACGTGGGCGTGTGCGTTC-GGA-TCAAGGTAC---TCGT-GATCTCTCTGTGTGTTTGCATTATAGAATGCA
gi|8 : AATCAATAACAAA---C--AT-TTCAACA----ACTTGTTTCATTGGACGCCATCTTGG---------CAAAACACCTATCGAGTA-GAAT---CGCCAGCTAGCAAGCACACACGTGGTCGCATGCGTTCGGAA-CCAGAACGC---TCGG-GATATCTCTGAGCGCTGGCACTACTGAATGCAC
gi|10 : CATAGGACGCCATCCTGGAAATCTTGGCGAAACACCTATTGAGTA-TAATCA--GAGCGCTTGCAAGCACTTACGTGGGCGCCTATGTTAAGAA-GCAGTGCGCTCGTGAT-GATATCTTTGAGCACTCGCATTATTGAACGCA
gi|11 : CGGACGCCACCTTGGAAATCTTGGCTAAACACCTATCGGGTA-CAATCA-CACAC--------GC--------GGGCGCCCGCGTTCAGAA-GCAAAGAGC---TCGG-CATATCTCTGGGCGCTCGCATTATTGAACGCA
gi|16 : GCAAACACTCACGTGGGCACCTGCATTTAGAT-CCAGAGCGC---TCTG-AATATCTTTCAGTGTTTGCATTAT
gi|3 : GCGTTCAAAAATGCGAGCGC---TAAGAGATATCCC
Alignments
lowQualScore : 111111 2222222222222
lowQualScore : 55 99999 666 0 1 111111 8888 2 0 5 1 0 0 5555555555555 2 4 66
lowQualScore : .. ..... ... . . ...... .... . . . . . . ............. . . ..
lowQualScore : 00 11111 444 8 0 555555 5555 3 9 6 8 5 1 9999999999999 7 4 11
consensus : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGCGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
Reference ( family-4652 ) : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGCGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
gi|1 : GAGGCACATCCAGTAAA--TCGGGCATT-----TGGT---CAAGCGACTGTTAGGAATAATATTTGTTAGCTGAATGCTTGTGAGCACCCGCTTATAATTCCAGATGGTGTCAATCAACAACAAAGATTACA------ACA----ACTTGTAACATCGGATGCCATCTTGGAAATCTTGGCGAAACACCTATGGAGCAAAATTACGCACGTTTGCAAGCACTCACATGGGTGCCTGCATTCAAAATCAGAGCGCTAA-G--GATATCTCTGCGCGATCGCATTATTGAACGCAC
gi|10 : CATAGGACGCCATCCTGGAAATCTTGGCGAAACACCTATTGAGTATAATCA-GAGCGCTTGCAAGCACTTACGTGGGCGCCTATGTTAAGAAGCAGTGCGCTCGTGATGATATCTTTGAGCACTCGCATTATTGAACGCA
gi|11 : CGGACGCCACCTTGGAAATCTTGGCTAAACACCTATCGGGTA----------------CAATCACACACGCGGGCGCCCGCGTTCAGAAGCAAAGAGCTCG-G--CATATCTCTGGGCGCTCGCATTATTGAACGCA
gi|12 : GAGACGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGTCGGGAATAGTATTGGTTAGTTAAACGCTTGCGAGTGCCCGCCTA-AATTCACGATCGCATCA---AACAACAAAGATTT
gi|13 : cgAAGCGTATTCTGTAAA--ACGAGCACTAAATATGGT---CAAGCACCCGCCGAGAATATTATTGGTTAGTTGAATGCTTGTGAGCGCCCACTTATAATTCAACATGGTGTCAATCAATA
gi|14 : aaAGACACGTTCAGTGAA--CCGAGCGCT-----TGGT---CGAGCGACTGCCGGGAATATTCCTGGTTA-CTGAACGCTTGCAAGCGCCCGCTCATAACTCAAAATGGCGTTAATCAACA
gi|15 : taGAGGCGTGTTCAGTAAA--TCGGGCGCT-----TTGT---CGAGCGCCTGCTTTGAATAGTATTGGTAAGTTGAACGCTTGTACGCGCCTGCTCATAATTCAAGATt
gi|16 : aGCAAACACTCACGTGGGCACCTGCATTTAGATCCAGAGCGCTCT-G--AATATCTTTCAGTGTTTGCATTAT
gi|17 : AGGCGCGTTCAGTAAA--TCGGGCGCT-----TTAT---CGAGCGCCTGTCGG
gi|2 : aGGGGCGTGTT-AGCAAA--TCGTGCACT-----TGGT---CGAGCGCCTGCCGGTAATAGTATTGGTAAGTTGAATGCTTGCGAGCGCCCGGTCATAATTCAAGAT-----CAATTA----CAAAT-TTTCA------AC-------TTGTAACATCGGACGCCATCTTAAAAATCTTGGCGAACAACTTATAGAGCAGA-TAGTGCGCGCTTACAAGCACTCACGTGGGCGCCTGTGTTCAGTATCAGAGCGCTCG-G--GATACATCTGAGCGCTCGCATTATTGAACGCA
gi|3 : AGGCGCGTTCAGTAAA--TCTGGCGCT-----TGGT---TGAGCGCCTGTCGGGAACATTATTGGTCAGTTGAACGATTGCGAGCGCCTGCTCATAATTTAAGATGGCGTCAATCAACAACAAAAATGT---------CA----ACTTGTAACAGCGGTCGTCACCTTGGTAAACATGGCCAAACACCTATCGAGTGG----GCGC--------------------------CTGTGTTCGGAATCAGACTGCTTG-G--GATATCTCTTAGCGCTCGCATTTTTGAACGC
gi|4 : AGGCGTGTTCGGTAAA--TCGTGCGTT-----TGGTGGTTGAGCGCCTCCCGG-AATATTATTGGTTAGTTGA---------------CGC--ATAA---AAGATGGCGTCAATCAACAAAAAATATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTTGAAATCTTGGcc
gi|4 : AAGATGGCGTCAACCAACAAAAAAGATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAgtaaagatggcgtcaaccaacaaaaaagatttcaacaatttataaaatcggacgccgtcttcgaaatcttggctaa
gi|5 : aggcgtgttcggtaaatcgtgcgtttggtggttgagcgcctcccggaatattattggttagttgacgcataaaagatggcgtcaatcaacaaaaaatatttcaacaatttataaaatcggacgccgtctttgaaatcttgggtaGAGGCACATTCAGTAAA--TTGGGTGCT-----TGTT---TGAG----TGCCAGGAATATTATTGGTTAGTTGAATGATTGCAAACACCTGTTCATAATTCAAGATGGTATAAATCAACAACAAAGATTTCA------ACA----ACTTGTAACATTGGACACCATCTTGGAAATCTTGGCGAAACACCTACCCTGTAGAATCGGGC-CACTTGCAAGCACT
gi|6 : ATGGCGTCAATCAAAAAAAAAGATTTTA------ACA----ACATATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAACACCCATCGAGAAGAATCGCGCGCGCTTGCAAGCATTTACGTTGGCGCCTACGTTCAGAACTAGAGGGCTCG-G--GATATCTCTGAGCGCTCGCATTATT--ATGCACt
gi|7 : TTAATCAACGATAAATCTGTCATATAAAGCACCACACTT-T--CATCGGACGCCAACTTGAAAATCTTGGCGAAATACTTATCGGGTAGAA--------------ATGCACTCACGTGGGCGTGTGCGTTC-GGATCAAGGTACTCG-T--GATCTCTCTGTGTGTTTGCATTATAGAATGCA
gi|8 : AATCAATAACAAACATTTCA------ACA----ACTTGTTTCATTGGACGCC---------ATCTTGGCAAAACACCTATCGAGTAGAATCGC-CA-GCTAGCAAGCACACACGTGGTCGCATGCGTTCGGAACCAGAACGCTCG-G--GATATCTCTGAGCGCTGGCACTACTGAATGCAC
gi|9 : GAGGCGCGATCAGTAAAAGTCGGGCGCT-----TGGT---CGAGCTCCTGCCGGGAATATTGTCGGTTAGTTGAACGCTTGCGAGCGCCTGCTCATATTTCAAGATGAGGTCAATCAACAACAAATATTTCA------ACA----AC-----ATATC---------------AATCTTGACGAAACACCTA
Alignments
lowQualScore : 111111 2222222222222
lowQualScore : 55 99999 666 0 1 111111 8888 2 0 5 1 0 0 5555555555555 2 4 66
lowQualScore : .. ..... ... . . ...... .... . . . . . . ............. . . ..
lowQualScore : 00 11111 444 8 0 555555 5555 3 9 6 8 5 1 9999999999999 7 4 11
consensus : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGCGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
Reference ( family-4652 ) : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGCGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
gi|1 : GAGGCACATCCAGTAAA--TCGGGCATT-----TGGT---CAAGCGACTGTTAGGAATAATATTTGTTAGCTGAATGCTTGTGAGCACCCGCTTATAATTCCAGATGGTGTCAATCAACAACAAAGATTACA------ACA----ACTTGTAACATCGGATGCCATCTTGGAAATCTTGGCGAAACACCTATGGAGCAAAATTACGCACGTTTGCAAGCACTCACATGGGTGCCTGCATTCAAAATCAGAGCGCTAA-G--GATATCTCTGCGCGATCGCATTATTGAACGCAC
gi|10 : CATAGGACGCCATCCTGGAAATCTTGGCGAAACACCTATTGAGTATAATCA-GAGCGCTTGCAAGCACTTACGTGGGCGCCTATGTTAAGAAGCAGTGCGCTCGTGATGATATCTTTGAGCACTCGCATTATTGAACGCA
gi|11 : CGGACGCCACCTTGGAAATCTTGGCTAAACACCTATCGGGTA----------------CAATCACACACGCGGGCGCCCGCGTTCAGAAGCAAAGAGCTCG-G--CATATCTCTGGGCGCTCGCATTATTGAACGCA
gi|12 : GAGACGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGTCGGGAATAGTATTGGTTAGTTAAACGCTTGCGAGTGCCCGCCTA-AATTCACGATCGCATCA---AACAACAAAGATTT
gi|13 : cgAAGCGTATTCTGTAAA--ACGAGCACTAAATATGGT---CAAGCACCCGCCGAGAATATTATTGGTTAGTTGAATGCTTGTGAGCGCCCACTTATAATTCAACATGGTGTCAATCAATA
gi|14 : aaAGACACGTTCAGTGAA--CCGAGCGCT-----TGGT---CGAGCGACTGCCGGGAATATTCCTGGTTA-CTGAACGCTTGCAAGCGCCCGCTCATAACTCAAAATGGCGTTAATCAACA
gi|15 : taGAGGCGTGTTCAGTAAA--TCGGGCGCT-----TTGT---CGAGCGCCTGCTTTGAATAGTATTGGTAAGTTGAACGCTTGTACGCGCCTGCTCATAATTCAAGATt
gi|16 : aGCAAACACTCACGTGGGCACCTGCATTTAGATCCAGAGCGCTCT-G--AATATCTTTCAGTGTTTGCATTAT
gi|17 : AGGCGCGTTCAGTAAA--TCGGGCGCT-----TTAT---CGAGCGCCTGTCGG
gi|2 : aGGGGCGTGTT-AGCAAA--TCGTGCACT-----TGGT---CGAGCGCCTGCCGGTAATAGTATTGGTAAGTTGAATGCTTGCGAGCGCCCGGTCATAATTCAAGAT-----CAATTA----CAAAT-TTTCA------AC-------TTGTAACATCGGACGCCATCTTAAAAATCTTGGCGAACAACTTATAGAGCAGA-TAGTGCGCGCTTACAAGCACTCACGTGGGCGCCTGTGTTCAGTATCAGAGCGCTCG-G--GATACATCTGAGCGCTCGCATTATTGAACGCA
gi|3 : AGGCGCGTTCAGTAAA--TCTGGCGCT-----TGGT---TGAGCGCCTGTCGGGAACATTATTGGTCAGTTGAACGATTGCGAGCGCCTGCTCATAATTTAAGATGGCGTCAATCAACAACAAAAATGT---------CA----ACTTGTAACAGCGGTCGTCACCTTGGTAAACATGGCCAAACACCTATCGAGTGG----GCGC--------------------------CTGTGTTCGGAATCAGACTGCTTG-G--GATATCTCTTAGCGCTCGCATTTTTGAACGC
gi|4 : AGGCGTGTTCGGTAAA--TCGTGCGTT-----TGGTGGTTGAGCGCCTCCCGG-AATATTATTGGTTAGTTGA---------------CGC--ATAA---AAGATGGCGTCAATCAACAAAAAATATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTTGAAATCTTGGcc
gi|4 : AAGATGGCGTCAACCAACAAAAAAGATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAgtaaagatggcgtcaaccaacaaaaaagatttcaacaatttataaaatcggacgccgtcttcgaaatcttggctaa
gi|5 : aggcgtgttcggtaaatcgtgcgtttggtggttgagcgcctcccggaatattattggttagttgacgcataaaagatggcgtcaatcaacaaaaaatatttcaacaatttataaaatcggacgccgtctttgaaatcttgggtaGAGGCACATTCAGTAAA--TTGGGTGCT-----TGTT---TGAG----TGCCAGGAATATTATTGGTTAGTTGAATGATTGCAAACACCTGTTCATAATTCAAGATGGTATAAATCAACAACAAAGATTTCA------ACA----ACTTGTAACATTGGACACCATCTTGGAAATCTTGGCGAAACACCTACCCTGTAGAATCGGGC-CACTTGCAAGCACT
gi|6 : ATGGCGTCAATCAAAAAAAAAGATTTTA------ACA----ACATATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAACACCCATCGAGAAGAATCGCGCGCGCTTGCAAGCATTTACGTTGGCGCCTACGTTCAGAACTAGAGGGCTCG-G--GATATCTCTGAGCGCTCGCATTATT--ATGCACt
gi|7 : TTAATCAACGATAAATCTGTCATATAAAGCACCACACTT-T--CATCGGACGCCAACTTGAAAATCTTGGCGAAATACTTATCGGGTAGAA--------------ATGCACTCACGTGGGCGTGTGCGTTC-GGATCAAGGTACTCG-T--GATCTCTCTGTGTGTTTGCATTATAGAATGCA
gi|8 : AATCAATAACAAACATTTCA------ACA----ACTTGTTTCATTGGACGCC---------ATCTTGGCAAAACACCTATCGAGTAGAATCGC-CA-GCTAGCAAGCACACACGTGGTCGCATGCGTTCGGAACCAGAACGCTCG-G--GATATCTCTGAGCGCTGGCACTACTGAATGCAC
gi|9 : GAGGCGCGATCAGTAAAAGTCGGGCGCT-----TGGT---CGAGCTCCTGCCGGGAATATTGTCGGTTAGTTGAACGCTTGCGAGCGCCTGCTCATATTTCAAGATGAGGTCAATCAACAACAAATATTTCA------ACA----AC-----ATATC---------------AATCTTGACGAAACACCTA
blockSeqs : AG AAATA GGT G TATAAA CCAC G A G ATCGCGCGCGCTT G T AT
blockSeqs : . . . T . . G A G ATCAGAGCGCTT G . .
blockSeqs : . . . A . . A A A TAGTGCGCGCTT C . .
blockSeqs : . . . T . . A A G ATCGGGCCACTT T . .
blockSeqs : . . . G . . G G T ATCGCCAGCTA T . .
blockSeqs : . . . G . . A G C GCGC C . .
blockSeqs : . . . G . . G A G A T . .
blockSeqs : . . . T . . . G C . C . .
blockSeqs : . . . C . . . A G
blockSeqs : . . . T . .
blockSeqs : . .
blockSeqCons : ATCGGCGCGCTT*
originalCons : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGCGCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
finalCons : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCGGCGCGCTT-GCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
Alignments
lowQualScore : 111111 222222222222222
lowQualScore : 55 99999 666 0 1 111111 8888 2 0 5 1 0 777777777777777 2 4 66
lowQualScore : .. ..... ... . . ...... .... . . . . . ............... . . ..
lowQualScore : 00 11111 444 8 0 555555 5555 3 9 6 8 5 222222222222222 7 4 11
consensus : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCG-GCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
Reference ( family-4652 ) : GAGGCGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGCCGGGAATATTATTGGTTAGTTGAACGCTTGCGAGCGCCCGCTCATAATTCAAGATGGCGTCAATCAACAACAAANATTTCA------ACA----ACTTGTAACATCGGACGCCGTCTTGGAAATCTTGGCGAAACACCTATCGAGTAGAATCG-GCGCGCTTGCAAGCACTCACGTGGGCGCCTGCGTTCAGAACCAGAGCGCTCG-G--GATATCTCTGAGCGCTCGCATTATTGAACGCAC
gi|1 : GAGGCACATCCAGTAAA--TCGGGCATT-----TGGT---CAAGCGACTGTTAGGAATAATATTTGTTAGCTGAATGCTTGTGAGCACCCGCTTATAATTCCAGATGGTGTCAATCAACAACAAAGATTACA------ACA----ACTTGTAACATCGGATGCCATCTTGGAAATCTTGGCGAAACACCTATGGAGCAAAATTACGCACGTTTGCAAGCACTCACATGGGTGCCTGCATTCAAAATCAGAGCGCTAA-G--GATATCTCTGCGCGATCGCATTATTGAACGCAC
gi|10 : CATAGGACGCCATCCTGGAAATCTTGGCGAAACACCTATTGAGTATAATCA-GAGCGCTTGCAAGCACTTACGTGGGCGCCTATGTTAAGAAGCAGTGCGCTCGTGATGATATCTTTGAGCACTCGCATTATTGAACGCA
gi|11 : CGGACGCCACCTTGGAAATCTTGGCTAAACACCTATCGGGTA----------------CAATCACACACGCGGGCGCCCGCGTTCAGAAGCAAAGAGCTCG-G--CATATCTCTGGGCGCTCGCATTATTGAACGCA
gi|12 : GAGACGCGTTCAGTAAA--TCGGGCGCT-----TGGT---CGAGCGCCTGTCGGGAATAGTATTGGTTAGTTAAACGCTTGCGAGTGCCCGCCTA-AATTCACGATCGCATCA---AACAACAAAGATTT
gi|13 : cgAAGCGTATTCTGTAAA--ACGAGCACTAAATATGGT---CAAGCACCCGCCGAGAATATTATTGGTTAGTTGAATGCTTGTGAGCGCCCACTTATAATTCAACATGGTGTCAATCAATA
gi|14 : aaAGACACGTTCAGTGAA--CCGAGCGCT-----TGGT---CGAGCGACTGCCGGGAATATTCCTGGTTA-CTGAACGCTTGCAAGCGCCCGCTCATAACTCAAAATGGCGTTAATCAACA
gi|15 : taGAGGCGTGTTCAGTAAA--TCGGGCGCT-----TTGT---CGAGCGCCTGCTTTGAATAGTATTGGTAAGTTGAACGCTTGTACGCGCCTGCTCATAATTCAAGATt
gi|16 : aGCAAACACTCACGTGGGCACCTGCATTTAGATCCAGAGCGCTCT-G--AATATCTTTCAGTGTTTGCATTAT
gi|17 : AGGCGCGTTCAGTAAA--TCGGGCGCT-----TTAT---CGAGCGCCTGTCGG
gi|2 : aGGGGCGTGTT-AGCAAA--TCGTGCACT-----TGGT---CGAGCGCCTGCCGGTAATAGTATTGGTAAGTTGAATGCTTGCGAGCGCCCGGTCATAATTCAAGAT-----CAATTA----CAAAT-TTTCA------AC-------TTGTAACATCGGACGCCATCTTAAAAATCTTGGCGAACAACTTATAGAGCAG-ATAGTGCGCGCTTACAAGCACTCACGTGGGCGCCTGTGTTCAGTATCAGAGCGCTCG-G--GATACATCTGAGCGCTCGCATTATTGAACGCA
gi|3 : AGGCGCGTTCAGTAAA--TCTGGCGCT-----TGGT---TGAGCGCCTGTCGGGAACATTATTGGTCAGTTGAACGATTGCGAGCGCCTGCTCATAATTTAAGATGGCGTCAATCAACAACAAAAATGT---------CA----ACTTGTAACAGCGGTCGTCACCTTGGTAAACATGGCCAAACACCTATCGAGTG-----G-GCGC------------------------CTGTGTTCGGAATCAGACTGCTTG-G--GATATCTCTTAGCGCTCGCATTTTTGAACGC
gi|4 : AGGCGTGTTCGGTAAA--TCGTGCGTT-----TGGTGGTTGAGCGCCTCCCGG-AATATTATTGGTTAGTTGA---------------CGC--ATAA---AAGATGGCGTCAATCAACAAAAAATATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTTGAAATCTTGGcc
gi|4 : AAGATGGCGTCAACCAACAAAAAAGATTTCA------ACA----ATTTATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAgtaaagatggcgtcaaccaacaaaaaagatttcaacaatttataaaatcggacgccgtcttcgaaatcttggctaa
gi|5 : aggcgtgttcggtaaatcgtgcgtttggtggttgagcgcctcccggaatattattggttagttgacgcataaaagatggcgtcaatcaacaaaaaatatttcaacaatttataaaatcggacgccgtctttgaaatcttgggtaGAGGCACATTCAGTAAA--TTGGGTGCT-----TGTT---TGAG----TGCCAGGAATATTATTGGTTAGTTGAATGATTGCAAACACCTGTTCATAATTCAAGATGGTATAAATCAACAACAAAGATTTCA------ACA----ACTTGTAACATTGGACACCATCTTGGAAATCTTGGCGAAACACCTACCCTGTAGAATCG-GGCCACTTGCAAGCACT
gi|6 : ATGGCGTCAATCAAAAAAAAAGATTTTA------ACA----ACATATAAAATCGGACGCCGTCTTCGAAATCTTGGCTAAACACCCATCGAGAAGAATCGCGCGCGCTTGCAAGCATTTACGTTGGCGCCTACGTTCAGAACTAGAGGGCTCG-G--GATATCTCTGAGCGCTCGCATTATT--ATGCACt
gi|7 : TTAATCAACGATAAATCTGTCATATAAAGCACCACACTT-T--CATCGGACGCCAACTTGAAAATCTTGGCGAAATACTTATCGGGTAGAA--------------ATGCACTCACGTGGGCGTGTGCGTTC-GGATCAAGGTACTCG-T--GATCTCTCTGTGTGTTTGCATTATAGAATGCA
gi|8 : AATCAATAACAAACATTTCA------ACA----ACTTGTTTCATTGGACGCC---------ATCTTGGCAAAACACCTATCGAGTAGAATCG-CCA-GCTAGCAAGCACACACGTGGTCGCATGCGTTCGGAACCAGAACGCTCG-G--GATATCTCTGAGCGCTGGCACTACTGAATGCAC
gi|9 : GAGGCGCGATCAGTAAAAGTCGGGCGCT-----TGGT---CGAGCTCCTGCCGGGAATATTGTCGGTTAGTTGAACGCTTGCGAGCGCCTGCTCATATTTCAAGATGAGGTCAATCAACAACAAATATTTCA------ACA----AC-----ATATC---------------AATCTTGACGAAACACCTA