lowQualScore : 11111111111111111111111111
lowQualScore : 111111 33333333333333333333333333333333 00000000000000000000000000 222 11 1 1 1111 1
lowQualScore : 3 99999 7777 222222 3 88888888888888888888888888888888 3 6 6 999999 3 3 3 6 3 555 0 77777777777777777777777777 000 3 999 11 5 88888 5 6 0 4444 8 44 3 4 2 9
lowQualScore : . ..... .... ...... . ................................ . . . ...... . . . . . ... . .......................... ... . ... .. . ..... . . . .... . .. . . . .
lowQualScore : 6 11111 7777 888888 6 33333333333333333333333333333333 3 7 7 666666 3 3 1 8 1 666 1 11111111111111111111111111 888 1 888 66 2 33333 7 9 0 7777 8 66 3 5 2 4
consensus : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCATA----GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATAT-TAAT-AT--GATTAT-------------TA--------TTGAGAAAT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
Reference ( gi|3 ) : TTATTGGGAAGCAAAGGGG-CC-----AT----GGGCCAGA----GT-CCCATTTTTAT-------------A--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATAT-TGAT-AT--GATTATG-G------A--GTA--------TGGAGAAAT-G-CCCATT-G-A-AAAAAATGAAAATC-----TAATAAACAATAC-AAAACTAACCTATT--AAA-ATTTATTCCTTCTCAACCAC
gi|9 : ATTGGGAAGTGAAAAGG-CC-----AT----TG-----------T-CCCATTTTTAT-------------C--AAAAAT-----GT---C---A-TTGA------TTTT-GGGAA-AATAT-TTAT-AC---ACAAGT-G------A--TTA--------TTGATAAAT-GGCCCTTT-G-A-AAAA--TGCAAATC-----TGATAAACAACAC-AAAAC-AGCCCATTAAAAA-AATTATT--TTC-CAACCA
gi|2 : gtgATTGTGAAGCGAATGGA-TA-----AT----GGGCCATA----GT-CCCATTTTTAT-------------A--CAGAAAA----ATGTAC-C-A-TTGA------TATT-GTGAA-AATAT-TAATAAA--AATTAT--G------A--TTA--------TTAAGAAATGG-CTTATT-G---AAAATATGTAATTTTTTTGTGATAAACAACACAAAAATTGGCC-AT-------ATGTTTTCCTTCCAAAC
gi|4 : tgtgATTTGGAAGGGTAGGGGATC-----AT----GGGTTTTA----GT-CCAATTTTTAT----------------------------------T-A-TT-A------TGTT-TGGAA-AATAT-TATT-AT--TATTATT-ATTTTTTA--TTA--------TTGAGAAAT-G-GCCATTTG-A-AAAAAATGCAAATC-----TGATAAACAACATAAAAAATCACTCATT--TAA-AATCATTCCTTCCCAACC
gi|14 : gtgATTTGGAAGCAAAGGGG-CC-----AG----GGGTCAGAATAAGT-CCCATTTTT-T-------------A--AAAAAAAT---GT---C-CCA-TTGA------TATA-GGGAA-AATCT-TAAT-AT--GACT
gi|8 : gATTGGGAAGCATAGGGG-CCTTATTATCTAAGGGCCATA----GT-CCCATTTTTAT-------------A--AAAAAAAAAATGTC--C-C-A-TTGATACATGTATT-GGGAA-AACAT-TTAT--T--GA--------------------------------AAAT-------------------ATGCAAATC-----TGATAAACAACAC-ATTGATGGCCCATT--AAA-AAGTACTCAGTCCCAAC
gi|5 : gtgATTTGGAAGAGTAGAGG-TC-----AT----ATACCAAA----GTTCCCATTT--AT-------------T--CAAATAT----GT---C-CCA-TTGA------TATT-TGGGA-AATAG-TAAT-AT--GGTTAT-------------CA-----------AGAAATGG-TCCATT-G---AAATCTTGCAAATA-----TTATAAACAACACTAAAAATGGCTCATG--AAAGAATTATTTTTTCACAATCACaat
gi|7 : tgTTGGGAAGCAATGGGG-CC-----AT----TGGCCACA----GT-CCAATTTATAT-------------CTTAAAAAAA----GT---C-C-AGTTAC------TATT-AGGAA-AATAT-TGAT-AT--GATTAT-------------TA-----------AAAAAT-GACTCATT-G-A-AATAT-TGCAAATT-----TGATAAACAACCC-CAAAATAGCCCATT--AAA-AATTATTCCTTCCCAACCAC
gi|10 : TTGGGAAGCAAAGGGG-GC-----AT----GGGCCATA----GT-CCCATTTTTAT----------------AAAATAT----GT---CAC-A-TTGA------TATT-GGGA----------AT-AT--G----------------------------TAAAAACAT-G-C------------AAAATGCAAATC-----TGATAAACAACCC-AAAAATTGCCCGTT--AAA-AGCT-TTTCTTCACTACCAC
gi|12 : TTGGGAAGCGAAGGGG-CT-----AT----GAGCCATA----GT-CCCATTTTTAT-------------C--AAACATG----TC---C-C-A-TTGA------CACTGGGGAA-AATAT-TAAA-AT--GATTAT-------------TA--------C---GAAATCG-CCCATT-G-A-AAACAAT
gi|1 : ctgtggAAACAAAGTGG-CC-----AT----GGGCCATA----GT-CTCATTTTTAT-------------C--AAAAAT-----GT---C-C-AATTAA------TATT-GGGAA-AATAA-TAAT-ATTTATTTATGTG------ATAGTAATTAAGATTTTAGAAAT-GTCCCACT-G-A-AAAA--TACAAATC-----GGATAAACAACAC-ATAAATAACCCATT--AAA-AATTATTTCTTCTGAACCAC
gi|11 : aAAGGGG-CT-----CT----GGGCCATA----GT-CCCATTTTCATACCAAAAAAAAAAA--AAAAAAA----ATGCCC-C-A-GTGA------TAAT-GGAAACAATAT-AAGT-AA--GACTAT-------------TA--------C---GAAATGG-CCCATT-tg
gi|17 : agtgattgagTTTTAT-------------A--AAAAATG----TC---C-C-A-TTGA------TATT-GGGAA-AATCT-TAAT-AT--CATTAT
gi|6 : TATATAAT-AC--AATTAT-------------TA---------AGAAAAA--G-TCCATT-G-A-AAAAG-CACAAATT-----TGATAAACAACAC-AAAAATGGACCATC--AAA-AATAATTTCTTTCCATCCAtaagaaa
gi|15 : tcatttgtaaatcaacattgaatgtacacttactgggcaagttatacctggaacatttttTA--------TTAAGAAATAG-TCCATT-G-ATAAAAAATGCAAATC-----TAATAAATAAAAC-AAAAATGGCCCATT--AAA-AAGTATTCGTTGCCAACCACttatataagtaca
gi|13 : tATT-GGA-AAAAAATGCAAACC-----TGATAAACAACAC-AAAGATGGCCCAAT--AAA-AATTGTTTCTTCCTAATCA
gi|16 : tattttttctatgatccatttaAAAAATGCAAATC-----TGGTAAACAGCAC-AAAGATGGCCCATT--AAA-AGTTGTTTCTTCCCAACCAC
Alignments
lowQualScore : 2222222222222222 2222222222 11111111111111 33333333333333333 111
lowQualScore : 3 88888 7777 555 3 3 8888888888888888 1111111111 3 9 6 888888 3 3 1 6666 66666666666666 33 2 6666 88888888888888888 2 888 2 888 66 77777 6 0 44 3 0
lowQualScore : . ..... .... ... . . ................ .......... . . . ...... . . . .... .............. .. . .... ................. . ... . ... .. ..... . . .. . .
lowQualScore : 3 33333 1111 888 3 3 2222222222222222 3333333333 1 2 2 888888 1 1 6 1111 99999999999999 99 9 1111 33333333333333333 9 555 9 444 00 77777 2 7 22 1 8
consensus : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTAAT----AT----------G---AT--TA-T----TA----TT----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
Reference ( family-4629 ) : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTAAT----AT----------G---AT--TA-T----TA----TT----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
gi|1 : AAACAAAGTGG-CC-----AT----GGGCCA---TA-GT-CTCATTTTTAT-------------C--AAAAAT-----GT---C-C-AATTAA------TATT-GGGAA-AATAATAAT----ATTTATTTATGTG---ATAGTAAT----TAAGATTT----------TAGAA-AT-GTCCCACT-G-A-AAAA--TACAAATC-----GGATAAACAACAC-ATAAATAACCCATT--AAA-AATTATTTCTTCTGAACCAC
gi|10 : aTTGGGAAGCAAAGGGG-GC-----AT----GGGCCA---TA-GT-CCCATTTTTAT----------------AAAATAT----GT---CAC-A-TTGA------TATT-GGG---------AAT----AT----------G----------------------T----------AAAAACAT-G-C------------AAAATGCAAATC-----TGATAAACAACCC-AAAAATTGCCCGTT--AAA-AGCT-TTTCTTCACTACCACtg
gi|11 : GAAGGGG-CT-----CT----GGGCCA---TA-GT-CCCATTTTCATACCAAAAAAAAAAA--AAAAAAA----ATGCCC-C-A-GTGA------TAAT-GGAAACAATATAAGT----AA----------G---AC--TA-T----TA----C-------------GAA-ATGG-CCCATT-
gi|12 : agtgattgaTTGGGAAGCGAAGGGG-CT-----AT----GAGCCA---TA-GT-CCCATTTTTAT-------------C--AAACATG----TC---C-C-A-TTGA------CACTGGGGAA-AATATTAAA----AT----------G---AT--TA-T----TA----C-------------GAA-ATCG-CCCATT-G-A-AAACAAT
gi|13 : ctgtggATT-GGA-AAAAAATGCAAACC-----TGATAAACAACAC-AAAGATGGCCCAAT--AAA-AATTGTTTCTTCCTAATCA
gi|14 : tattttttctatgatccatttaATTTGGAAGCAAAGGGG-CC-----AG----GGGTCAGAATAAGT-CCCATTTTT-T-------------A--AAAAAAAT---GT---C-CCA-TTGA------TATA-GGGAA-AATCTTAAT----AT----------G---AC--T
gi|15 : g-T----TA----TT----------AAGAA-ATAG-TCCATT-G-ATAAAAAATGCAAATC-----TAATAAATAAAAC-AAAAATGGCCCATT--AAA-AAGTATTCGTTGCCAACCAC
gi|16 : AAAAATGCAAATC-----TGGTAAACAGCAC-AAAGATGGCCCATT--AAA-AGTTGTTTCTTCCCAACCAC
gi|17 : TTTTAT----------------AAAAAAT----GT---C-CCA-TTGA------TATT-GGGAA-AATCTTAAT----AT----------C---AT--TA-T----TA-----------------AGAA-At
gi|2 : ATTGTGAAGCGAATGGA-TA-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------A--CAGAAAA----ATGTAC-C-A-TTGA------TATT-GTGAA-AATATTAATAAAAAT----------T---AT--GA-T----TA----TT----------AAGAA-ATGG-CTTATT-G---AAAATATGTAATTTTTTTGTGATAAACAACAC-AAAAATTGGCCAT-----A-TGTT-TTCCTTCCAAAC
gi|3 : tgtgATTGGGAAGCAAAGGGG-CC-----AT----GGGCCA---GA-GT-CCCATTTTTAT-------------A--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTGAT----AT----------G---AT--TA-TGGAGTA----TG----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGAAAATC-----TAATAAACAATAC-AAAACTAACCTATT--AAA-ATTTATTCCTTCTCAACCAC
gi|4 : ttATTTGGAAGGGTAGGGGATC-----AT----GGGTTT---TA-GT-CCAATTTTTAT-------------T--A---------------------TT-A------TGTT-TGGAA-AATATTATT----AT----------T---AT--TA-T----TA----TTTTTTATTATTGAGAA-AT-G-GCCATTTG-A-AAAAAATGCAAATC-----TGATAAACAACATAAAAAATCACTCATT--TAA-AATCATTCCTTCCCAACC
gi|5 : gtgATTTGGAAGAGTAGAGG-TC-----AT----ATACCA---AA-GTTCCCATTT--AT-------------T--CAAATAT----GT---C-CCA-TTGA------TATT-TGGGA-AATAGTAAT----AT----------G---GT--TA-T----CA-----------------AGAA-ATGG-TCCATT-G---AAATCTTGCAAATA-----TTATAAACAACACTAAAAATGGCTCATG--AAAGAATTATTTTTTCACAATCAC
gi|6 : tgATAT-AAT----AC----------A---AT--TA-T----TA----A-----------GAAAA-A--G-TCCATT-G-A-AAAAG-CACAAATT-----TGATAAACAACAC-AAAAATGGACCATC--AAA-AATAATTTCTTTCCATCCA
gi|7 : tcatttgtaaatcaacattgaatgtacacttactgggcaagttatacctggaacattttttTTGGGAAGCAATGGGG-CC-----AT----TGGCCA---CA-GT-CCAATTTATAT-------------CTTAAAAAAA----GT---C-C-AGTTAC------TATT-AGGAA-AATATTGAT----AT----------G---AT--TA-T----TA-----------------AAAA-AT-GACTCATT-G-A-AATAT-TGCAAATT-----TGATAAACAACCC-CAAAATAGCCCATT--AAA-AATTATTCCTTCCCAACCACttatataagtaca
gi|8 : ATTGGGAAGCATAGGGG-CCTTATTATCTAAGGGCCA---TA-GT-CCCATTTTTAT-------------A--AAAAAAAAAATGTC--C-C-A-TTGATACATGTATT-GGGAA-AACAT-------------------------------T----TA----TT----------GA-AA-AT-------------------ATGCAAATC-----TGATAAACAACAC-ATTGATGGCCCATT--AAA-AAGTACTCAGTCCCAAC
gi|9 : gtgATTGGGAAGTGAAAAGG-CC-----AT-------------T--GT-CCCATTTTTAT-------------C--AAAAAT-----GT---C---A-TTGA------TTTT-GGGAA-AATATTTAT----AC----------ACAAGT--GA-T----TA----TT----------GATAA-AT-GGCCCTTT-G-A-AAA--ATGCAAATC-----TGATAAACAACAC--AAAACAGCCCATTAAAAA-AATTAT---TTTCCAACCAaat
Alignments
lowQualScore : 2222222222222222 2222222222 11111111111111 33333333333333333 111
lowQualScore : 3 88888 7777 555 3 3 8888888888888888 1111111111 3 9 6 888888 3 3 1 6666 66666666666666 33 2 6666 88888888888888888 2 888 2 888 66 77777 6 0 44 3 0
lowQualScore : . ..... .... ... . . ................ .......... . . . ...... . . . .... .............. .. . .... ................. . ... . ... .. ..... . . .. . .
lowQualScore : 3 33333 1111 888 3 3 2222222222222222 3333333333 1 2 2 888888 1 1 6 1111 99999999999999 99 9 1111 33333333333333333 9 555 9 444 00 77777 2 7 22 1 8
consensus : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTAAT----AT----------G---AT--TA-T----TA----TT----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
Reference ( family-4629 ) : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTAAT----AT----------G---AT--TA-T----TA----TT----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
gi|1 : AAACAAAGTGG-CC-----AT----GGGCCA---TA-GT-CTCATTTTTAT-------------C--AAAAAT-----GT---C-C-AATTAA------TATT-GGGAA-AATAATAAT----ATTTATTTATGTG---ATAGTAAT----TAAGATTT----------TAGAA-AT-GTCCCACT-G-A-AAAA--TACAAATC-----GGATAAACAACAC-ATAAATAACCCATT--AAA-AATTATTTCTTCTGAACCAC
gi|10 : aTTGGGAAGCAAAGGGG-GC-----AT----GGGCCA---TA-GT-CCCATTTTTAT----------------AAAATAT----GT---CAC-A-TTGA------TATT-GGG---------AAT----AT----------G----------------------T----------AAAAACAT-G-C------------AAAATGCAAATC-----TGATAAACAACCC-AAAAATTGCCCGTT--AAA-AGCT-TTTCTTCACTACCACtg
gi|11 : GAAGGGG-CT-----CT----GGGCCA---TA-GT-CCCATTTTCATACCAAAAAAAAAAA--AAAAAAA----ATGCCC-C-A-GTGA------TAAT-GGAAACAATATAAGT----AA----------G---AC--TA-T----TA----C-------------GAA-ATGG-CCCATT-
gi|12 : agtgattgaTTGGGAAGCGAAGGGG-CT-----AT----GAGCCA---TA-GT-CCCATTTTTAT-------------C--AAACATG----TC---C-C-A-TTGA------CACTGGGGAA-AATATTAAA----AT----------G---AT--TA-T----TA----C-------------GAA-ATCG-CCCATT-G-A-AAACAAT
gi|13 : ctgtggATT-GGA-AAAAAATGCAAACC-----TGATAAACAACAC-AAAGATGGCCCAAT--AAA-AATTGTTTCTTCCTAATCA
gi|14 : tattttttctatgatccatttaATTTGGAAGCAAAGGGG-CC-----AG----GGGTCAGAATAAGT-CCCATTTTT-T-------------A--AAAAAAAT---GT---C-CCA-TTGA------TATA-GGGAA-AATCTTAAT----AT----------G---AC--T
gi|15 : g-T----TA----TT----------AAGAA-ATAG-TCCATT-G-ATAAAAAATGCAAATC-----TAATAAATAAAAC-AAAAATGGCCCATT--AAA-AAGTATTCGTTGCCAACCAC
gi|16 : AAAAATGCAAATC-----TGGTAAACAGCAC-AAAGATGGCCCATT--AAA-AGTTGTTTCTTCCCAACCAC
gi|17 : TTTTAT----------------AAAAAAT----GT---C-CCA-TTGA------TATT-GGGAA-AATCTTAAT----AT----------C---AT--TA-T----TA-----------------AGAA-At
gi|2 : ATTGTGAAGCGAATGGA-TA-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------A--CAGAAAA----ATGTAC-C-A-TTGA------TATT-GTGAA-AATATTAATAAAAAT----------T---AT--GA-T----TA----TT----------AAGAA-ATGG-CTTATT-G---AAAATATGTAATTTTTTTGTGATAAACAACAC-AAAAATTGGCCAT-----A-TGTT-TTCCTTCCAAAC
gi|3 : tgtgATTGGGAAGCAAAGGGG-CC-----AT----GGGCCA---GA-GT-CCCATTTTTAT-------------A--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTGAT----AT----------G---AT--TA-TGGAGTA----TG----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGAAAATC-----TAATAAACAATAC-AAAACTAACCTATT--AAA-ATTTATTCCTTCTCAACCAC
gi|4 : ttATTTGGAAGGGTAGGGGATC-----AT----GGGTTT---TA-GT-CCAATTTTTAT-------------T--A---------------------TT-A------TGTT-TGGAA-AATATTATT----AT----------T---AT--TA-T----TA----TTTTTTATTATTGAGAA-AT-G-GCCATTTG-A-AAAAAATGCAAATC-----TGATAAACAACATAAAAAATCACTCATT--TAA-AATCATTCCTTCCCAACC
gi|5 : gtgATTTGGAAGAGTAGAGG-TC-----AT----ATACCA---AA-GTTCCCATTT--AT-------------T--CAAATAT----GT---C-CCA-TTGA------TATT-TGGGA-AATAGTAAT----AT----------G---GT--TA-T----CA-----------------AGAA-ATGG-TCCATT-G---AAATCTTGCAAATA-----TTATAAACAACACTAAAAATGGCTCATG--AAAGAATTATTTTTTCACAATCAC
gi|6 : tgATAT-AAT----AC----------A---AT--TA-T----TA----A-----------GAAAA-A--G-TCCATT-G-A-AAAAG-CACAAATT-----TGATAAACAACAC-AAAAATGGACCATC--AAA-AATAATTTCTTTCCATCCA
gi|7 : tcatttgtaaatcaacattgaatgtacacttactgggcaagttatacctggaacattttttTTGGGAAGCAATGGGG-CC-----AT----TGGCCA---CA-GT-CCAATTTATAT-------------CTTAAAAAAA----GT---C-C-AGTTAC------TATT-AGGAA-AATATTGAT----AT----------G---AT--TA-T----TA-----------------AAAA-AT-GACTCATT-G-A-AATAT-TGCAAATT-----TGATAAACAACCC-CAAAATAGCCCATT--AAA-AATTATTCCTTCCCAACCACttatataagtaca
gi|8 : ATTGGGAAGCATAGGGG-CCTTATTATCTAAGGGCCA---TA-GT-CCCATTTTTAT-------------A--AAAAAAAAAATGTC--C-C-A-TTGATACATGTATT-GGGAA-AACAT-------------------------------T----TA----TT----------GA-AA-AT-------------------ATGCAAATC-----TGATAAACAACAC-ATTGATGGCCCATT--AAA-AAGTACTCAGTCCCAAC
gi|9 : gtgATTGGGAAGTGAAAAGG-CC-----AT-------------T--GT-CCCATTTTTAT-------------C--AAAAAT-----GT---C---A-TTGA------TTTT-GGGAA-AATATTTAT----AC----------ACAAGT--GA-T----TA----TT----------GATAA-AT-GGCCCTTT-G-A-AAA--ATGCAAATC-----TGATAAACAACAC--AAAACAGCCCATTAAAAA-AATTAT---TTTCCAACCAaat
blockSeqs : A TTATT CTAA GAA A T ACCAAAAAAAAAAA AAAATGTC A C G TACATG G C A AAAA ACAA . . GGAG TTTTTTATTATTG C GG T GA AA TTTTG A AA G
blockSeqs : . . . . . . CTT AATGCC . C . . . . T . G . . . TTA . CG . AT AA . T . .
blockSeqs : . . . . . . C AATGTA . C . . . . T . G . . . TTA . AG . A AA . . . .
blockSeqs : . . . . . . A ATGT . . . . . . T . G . . . TGG . GG . A AA . . . .
blockSeqs : . . . . . . A TGT . . . . . . T . G . . . TTG . GG . A AA . . . .
blockSeqs : . . . . . . A GTC . . . . . . T . C . . . TTG . GA . A TA . . . .
blockSeqs : . . . . . . T TGT . . . . . . T . T . . . TA . GG . A AA . . . .
blockSeqs : . . . . . . T AGT . . . . . . T . G . . . AG . G . A AA . . . .
blockSeqs : . . . . . . A TGT . . . . . . T . T . . . C . G . . CT . . . .
blockSeqs : . . . . . . C AGT . . . . . . T . G . . . C . G . . G . . . .
blockSeqs : . . . . . . . GT . . . . . . . . A . . . . . G . . T . . . .
blockSeqs : . . . . . . . . . . G . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . A
blockSeqCons : TGT******* G************* ** TG*************** AA
originalCons : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAAA----GT---C-C-A-TTGA------TATT-GGGAA-AATATTAAT----AT----------G---AT--TA-T----TA----TT----------GAGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
finalCons : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT-------------N--AAAAAATGT-------C-C-A-TTGA------TATT-GGGAA-AATATTAAT----ATG-------------AT--TA-T----TATG---------------AGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
Alignments
lowQualScore : 444444444444444444 666666666666666666666666666666666666666 111
lowQualScore : 3 88888 7777 555 3 3 111111111111111111 0 3 9 3 9 6 888888 3 3 9999999 888888 1 222222222222222222222222222222222222222 2 888 2 888 66 77777 6 0 44 3 0
lowQualScore : . ..... .... ... . . .................. . . . . . . ...... . . ....... ...... . ....................................... . ... . ... .. ..... . . .. . .
lowQualScore : 3 33333 1111 888 3 3 222222222222222222 4 1 2 1 2 2 888888 1 1 3333333 222222 9 444444444444444444444444444444444444444 9 555 9 444 00 77777 2 7 22 1 8
consensus : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT---------------N--AAAAAATG-T-C-C-A-TTGA------TATT-GGGAA-AATATTAA-------TA------TGATTAT----T-AT-----------G-------------------AGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
Reference ( family-4629 ) : NNATTGGGAAGCGAAGGGG-CC-----AT----GGGCCA---TA-GT-CCCATTTTTAT---------------N--AAAAAATG-T-C-C-A-TTGA------TATT-GGGAA-AATATTAA-------TA------TGATTAT----T-AT-----------G-------------------AGAA-AT-G-CCCATT-G-A-AAAAAATGCAAATC-----TGATAAACAACAC-AAAAATGGCCCATT--AAA-AATTATTCCTTCCCAACCAC
gi|1 : AAACAAAGTGG-CC-----AT----GGGCCA---TA-GT-CTCATTTTTAT---------------C--AAAAA-TG-T-C-C-AATTAA------TATT-GGGAA-AATAATAA-------TA------T--TTAT----TTAT-----------GTGATAGTAATTAAGATTTTAGAA-AT-GTCCCACT-G-A-AAAA--TACAAATC-----GGATAAACAACAC-ATAAATAACCCATT--AAA-AATTATTTCTTCTGAACCAC
gi|10 : aTTGGGAAGCAAAGGGG-GC-----AT----GGGCCA---TA-GT-CCCATTTTTAT------------------AAAATATG-T-CAC-A-TTGA------TATT-GGG---------AA-------TA------TG------------T-----------A-------------------AAAACAT-G-C------------AAAATGCAAATC-----TGATAAACAACCC-AAAAATTGCCCGTT--AAA-AGCT-TTTCTTCACTACCACtg
gi|11 : GAAGGGG-CT-----CT----GGGCCA---TA-GT-CCCATTTTCATACCAAAAAAAAAAAAA--AAAAAATGCC-C-C-A-GTGA------TAAT-GGAAACAATATAAG-------TA------AGACTAT----T-AC--------------------------------GAA-ATGG-CCCATT-
gi|12 : agtgattgaTTGGGAAGCGAAGGGG-CT-----AT----GAGCCA---TA-GT-CCCATTTTTAT---------------C---AAACATG-TCC-C-A-TTGA------CACTGGGGAA-AATATTAA-------AA------TGATTAT----T-AC--------------------------------GAA-ATCG-CCCATT-G-A-AAACAAT
gi|13 : ctgtggATT-GGA-AAAAAATGCAAACC-----TGATAAACAACAC-AAAGATGGCCCAAT--AAA-AATTGTTTCTTCCTAATCA
gi|14 : tattttttctatgatccatttaATTTGGAAGCAAAGGGG-CC-----AG----GGGTCAGAATAAGT-CCCATTTTTTA---------------A--AAAAAATG-T-C-CCA-TTGA------TATA-GGGAA-AATCTTAA-------TA------TGACT
gi|15 : gTTAT----T-A--------------------------------AGAA-ATAG-TCCATT-G-ATAAAAAATGCAAATC-----TAATAAATAAAAC-AAAAATGGCCCATT--AAA-AAGTATTCGTTGCCAACCAC
gi|16 : AAAAATGCAAATC-----TGGTAAACAGCAC-AAAGATGGCCCATT--AAA-AGTTGTTTCTTCCCAACCAC
gi|17 : TTTTAT------------------AAAAAATG-T-C-CCA-TTGA------TATT-GGGAA-AATCTTAA-------TA------TCATTAT----T-A--------------------------------AGAA-At
gi|2 : ATTGTGAAGCGAATGGA-TA-----AT----GGGCCA---TA-GT-CCCATTTTTATAC-------------A--GAAAAATG-TAC-C-A-TTGA------TATT-GTGAA-AATATTAATAAAAATTA------TGATTAT----T-A--------------------------------AGAA-ATGG-CTTATT-G---AAAATATGTAATTTTTTTGTGATAAACAACAC-AAAAATTGGCCAT-----A-TGTT-TTCCTTCCAAAC
gi|3 : tgtgATTGGGAAGCAAAGGGG-CC-----AT----GGGCCA---GA-GT-CCCATTTTTAT---------------A--AAAAAAAG-T-C-C-A-TTGA------TATT-GGGAA-AATATTGA-------TA------TGATTATGGAGT-ATG----------G-------------------AGAA-AT-G-CCCATT-G-A-AAAAAATGAAAATC-----TAATAAACAATAC-AAAACTAACCTATT--AAA-ATTTATTCCTTCTCAACCAC
gi|4 : ttATTTGGAAGGGTAGGGGATC-----AT----GGGTTT---TA-GT-CCAATTTTTAT---------------T--A----------------TT-A------TGTT-TGGAA-AATATTAT-------TA------TTATTAT----T-ATTTTTTATTATTG-------------------AGAA-AT-G-GCCATTTG-A-AAAAAATGCAAATC-----TGATAAACAACATAAAAAATCACTCATT--TAA-AATCATTCCTTCCCAACC
gi|5 : gtgATTTGGAAGAGTAGAGG-TC-----AT----ATACCA---AA-GTTCCCATTT--AT---------------T--CAAATATG-T-C-CCA-TTGA------TATT-TGGGA-AATAGTAA-------TA------TGGTTAT----C-A--------------------------------AGAA-ATGG-TCCATT-G---AAATCTTGCAAATA-----TTATAAACAACACTAAAAATGGCTCATG--AAAGAATTATTTTTTCACAATCAC
gi|6 : tgATAT-AA-------TA------CAATTAT----T-AA-----------G-------------------AAAA-A--G-TCCATT-G-A-AAAAG-CACAAATT-----TGATAAACAACAC-AAAAATGGACCATC--AAA-AATAATTTCTTTCCATCCA
gi|7 : tcatttgtaaatcaacattgaatgtacacttactgggcaagttatacctggaacattttttTTGGGAAGCAATGGGG-CC-----AT----TGGCCA---CA-GT-CCAATTTATAT---------------CTTAAAAAAAG-T-C-C-AGTTAC------TATT-AGGAA-AATATTGA-------TA------TGATTAT----T-A--------------------------------AAAA-AT-GACTCATT-G-A-AATAT-TGCAAATT-----TGATAAACAACCC-CAAAATAGCCCATT--AAA-AATTATTCCTTCCCAACCACttatataagtaca
gi|8 : ATTGGGAAGCATAGGGG-CCTTATTATCTAAGGGCCA---TA-GT-CCCATTTTTATAAAA-----------A--AAAAAATG-TCC-C-A-TTGATACATGTATT-GGGAA-AACATT---------TA------T-------------T-----------G-------------------A-AA-AT-------------------ATGCAAATC-----TGATAAACAACAC-ATTGATGGCCCATT--AAA-AAGTACTCAGTCCCAAC
gi|9 : gtgATTGGGAAGTGAAAAGG-CC-----AT-------------T--GT-CCCATTTTTAT---------------C--AAAAA-TG-T-C---A-TTGA------TTTT-GGGAA-AATATTTA-------TACACAAGTGATTAT----T--------------G-------------------ATAA-AT-GGCCCTTT-G-A-AAA--ATGCAAATC-----TGATAAACAACAC--AAAACAGCCCATTAAAAA-AATTAT---TTTCCAACCAaat