lowQualScore : 1 1 333333333 111111 1 22222222222 1 1 1 1 111111 1 1 1 1 222222222 1111111 11111 11111 333333333333 1111111 111
lowQualScore : 4 9 4 2 6 6 5 777777777 888888 8888 5 3 55555555555 777 8 5 77 5 1 999999 2 5 5 6 8 0 2 5 5 888 888888 9999 0 3 8 1 6 777777777 0 999999 1111111 00000 00000 4 777777777777 5 5 66 8888888 000 1 5
lowQualScore : . . . . . . . ......... ...... .... . . ........... ... . . .. . . ...... . . . . . . . . . ... ...... .... . . . . . ......... . ...... ....... ..... ..... . ............ . . .. ....... ... . .
lowQualScore : 0 4 0 5 0 0 0 222222222 999999 5555 0 9 44444444444 888 6 4 99 0 0 222222 2 0 0 2 6 1 5 0 0 222 111111 0000 6 6 3 1 1 888888888 2 333333 7777777 00000 00000 0 999999999999 0 0 99 6666666 000 4 2
consensus : TTTGG-ACAAA-AATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGT-------A-TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACANAAATATAAACACAAATCTTGTATNTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAATAT---------TA-TA-TA--TAT-------AA---GATATTATTATGACATCTTT
Reference ( gi|2 ) : TTTGG-ACGAA-AATGGAAACGAGGCATGTCCCAAAACCGTATCAAAGAGGAAGAACAGT-------T-TATAT------TCATGTAAACAGTGTAAG----GTGACTACCAC----------TA---GTAGCGGGACTTACAGTTGGCATGTGACGT--GTGCACAAAACTGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCTCACTGTTTGATTT-AAAAGAAG-ACATTCGTTCACAACATCTAAATATACTCAGATGATATGTG-AACAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACACAAATATAAACACAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAATAT---------TA-TA-TA--TAT-------AA---GATATTATTATGACATCTTT
gi|6 : TTTGG-ACAAA-AAATGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTATAAACAT-TATAC------TGATGTAAACAGTGTAAG----GTCACCACCAC----------CAAGTATAGCG
gi|5 : TTTTG-ACAAA-AAATGAAATGAGGCATGTTCCTAAACCGTAGCAA-------GAACAGTATA----TATATAT------TCGTGTAAACAGTGTCAG----GTCACCACCAC----------CA---GTAGTGGAA-TTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCAACCGCATGTATAGCGCACTGTTTGATTT-AAAATAAATACAGTCGTTCACAACATCTA--------CA-----TATGTG-AAAAGTCAATTACTTTATCGTA---ACTTTGAcactgtttgatttaaaagaagacagtcgtccacaacatctacatatactcagatgatatgtgaaaagttaattactttatggcagactttaaatatgcacaggttaaagtatcataacttggaccgacaacacccaccctatgcacaaaaatataagcacaaatcttgtatttgatgttcattcgaaacattatatatatataagatattattatgacatcttt
gi|19 : TTTGG-ACAAA-TATTGAATTGAGGCATGTTCCAAAACCGTATTAAAGAGCAAGAACAGT-------A-TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGTGGGAATTACAGTAGGCATGTccgacaacacccacccaacgcacaaaaatataaacacaaatcttgtatttgtgtgtttgatgttcatttgaaagattatata
gi|17 : TTTAG-ACAAA-AATTGAAATGAGGTATGTTCCAAAACAGTATCAAAGAGCAAGAACAGT-------A-TATATATGTATTCATGTAAACAGTGTAAG----GTCACAACCAC----------CA---GTAGAGGGAATAACAGTAGGCATGTGATGTGAGTGAACA
gi|18 : TTTGG-ACAAA-AATTGAAATAATGCATGTTTCAAAACCGTATCAAAGAGCAAGAACTAT-------A-TATATAC----TCATGTAAACAGTGTAAG----GTCACTACCAT----------CA---GTAGCGGGAATTATAGTCGACATGTca
gi|24 : TTTGG-ACAAA-AATTGAAATGAGGCATGTTACAAAACCGTACCAAAGAGCAAGAACAAT-------A-TATAT------TCATTTAAACAGTGTAAG----GT
gi|21 : TTTGG-ACAAA-AATTGAAATGAGGCATGTTACAAAACCGTTTCAAAGAGCAAAAAATAT-------A-TATAT------TCATTTAAATAGTGTTAG----GTCACTACCAC----------CA---
gi|27 : TTTGG-AC-AA-AGTTAAAATGAGGTATGTTCAAAAACTGTATCAAAGAGCAAGAACAAT-------
gi|28 : TTGG-ACAAAGAATG-AAATGAGGTATTTTCCAAAACCGTATCAAAGAGCAAGGACA
gi|8 : TGGCACAAA-AATTGAAATAAGACATGTTCCAACACCGTATCAACGAGCAAGAACAGT-------A-TGTAT------TCATGTAAACGGTGTAAG----GTCACCACTAC----------CA---GTAGCAGGAAGTACAGAAGGCATGTGACGT--GTGCACACAACGACAGAACATA------TTCCGGTCACTCGTCCGACCGCTAGTATAGCTCACTGTTTGATTTAAAAAGAAG-ATAATCGTTCACAACATCTATATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCG
gi|16 : a-TATAT------CTATGTACACAGT--AAG----TTCACCACCAA----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAATGGCAGAATA-------------GTCACTCGTGCGGCCGCAAGTTTAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAATATCTACATATACTCAGATGATATGTG-AAAAGTC
gi|4 : aCATGTAAGCAGTGTA-GCCTCATCACCACCACGAACGATAACCA---GAAGTGGGAATTACAGTAGGTATGTGACGC--GTGCAAACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGTACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCACATGATATGAG-AAAAGTCA-------TATGGCA--TATTTTAAATATGCACAGGTTAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACA-----------A-AAATCTTGTACTTG--TGTGTTT-----G-AT-----GC-----TCATTTG-AAAT-T---------TATTA-TA--TAT-------TA---CATATTATTATGATATCTTT
gi|12 : GGCATGTGAGCT--GTGCACACAATGGCAGAACTTA------TTTCGGTCACTCGTGCGACCCCAAGTAAAGCACACTGTTTGGTTT-AAAAGAAG-ACGATCGTTCACAACATCTACATA-ATTC------TATGTGAAAAAAACAATTAATTGATGGCA--AACTTAAAATATGCACAGGTCAAAGT------------------------ACCCACCCTACGCACAAAAAT-TTGACACCAATCTTG-A---------GTTT-----G-AT-----GT-----TTATTTG-AAA----------------A-TA--TAT-------AA---AAT
gi|7 : taATGTGACGT--GTGCACACAAATGCAGAACATACTAGTATTCCGGTCACTTGTGCGGCCTCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCTTTCACAACATCTTTATATATTTAGATGATATGTG-TAAAGTCAATAACTTGATGGCA--GACTTTAAATTTGAACAGGCCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACAAAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----ACTTTTG-AAATAT---------TA-TA-TA--TATATATATAAA---GATATTATTATGA-ATTTTT
gi|6 : CAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAGTCGTCCACAACATCTACATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTTAAAGTATCATAACT-TGGACC-GACAAC-ACCCACCCTATGCACAAAAATATAAGCACAAATCTTGTA----------TTT-----G-AT-----GT-----TCATTCG-AAACATTA-------TA-TA-TA--TAT-------AA---GATATTATTATGACATCTTTtttat
gi|11 : tttggacaaaaaatgaaatgaggcatgttccaaaaccgtatcaaagagcaagaacagtataaacattatactgatgtaaacagtgtaaggtcaccaccacTAGCGCACTGTTTGTTTT-AAAAGATG-ACAGTTGTCCACAACATCTACATATACTCGGATGATATGTA-AAAAGTCAATTACTTTATGGCA--GACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNN-----N-NN-----NN-----NNNNNNN-NNNNNN---------NN-NN-NA--TAT-------AAGATGATATTATCTTGACATCCTT
gi|3 : TTATGACACTGA---TAGATGT-CACAGTTCAAAGTATCATACCT-AGAACCTGACCCC-ACCCATCC-------ACAAA----AAC---------GTATTTA--TGTGTTTTATATG-ATAACACGT-----TCATTTG-AAA-ATAAACCAATACA-TAATA--TAT-------AA---GA---TATTGTGACATttt
gi|13 : ATGCACATGTCAAAGTATCGTACCT-GGGAC----------CCCACCCCACCCAC-C-----TAGACAAAAA---TGTATGTA--TGTGCTT-----T-AT-----ATGATTATCATTTGAAAATATA--------TA-TA-TATTTAT-------AC---G--ATTATTACTAGATCTggttaccatgacgactataacggtagcatcgatatgctctcctgtcaggctcgcgtacaaaatatatgtcaacaaaatatttcaatcaaaccacaatgtttgtttccaacaacgcccgacgcgtttctgagctacgagcgtgtaaacatgtagaaagtatgtcactgcgatacttttgaaattcacatgatctccaggcgtttgcaaatcatgaaattcttttctggtaa
gi|20 : aaCACAGGTCAAAGTATCGT--TTATAGGCC-CCCAAC-ACatgtgtagatttgtgacataattatgtcactggtataagcaaaatcatgtgaccgttcataagtaatgta
gi|25 : ttataaactcatccaggtCAGGTCAAAGTATCGTACCT-AGGAC------AC-ACC---------TACACAAAT-T--------ATTTTTTATATGATTATAAT--------AT-----AT-----TCATTTG-AAAgtattttgtgtattataggtttatttgcaaaataaatacccacacacatatatattattcatgacat
gi|10 : CAGGTCAAAGTATCGT--------ACC-TACAACGACCCTCCC-ACCCCTCCAAATAT----TTATGTGTTTTATATG--AATATAT-----ACAT-----GT-----TCATTTG-at
gi|5 : TATCGTAACT-TTGACC-GACAAC-ACCCACCCAACGCACAAAAATATAAACACAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAAGAT---------TA-TA-TA--ggggaaaatgtaaaaaaatgtttctataaataatacgacaaggtaaccatgaccctcgtcacggcagtatcgatatgttgagactcgcatataaaagtttatcaacaaaaccaccacgttttacacacagattgatctgttcaaaaatatttacttcaa
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TATCTATGTGTTTTATATGATAATATATTTCTGTTTATTTGAAAAAAAAATATTATGACAAGGTAACCATGAACTTCGTCACGGCAGTATAGATAGGTGTTCCGTTGAGGACCACACAAAAAGTTTTTTAACAAAACATGTTATCAAACCACCACGTGTTACTCACAAATGCTTGATCTGTTCAAAAAGGTTTACTTCAACGATCAACGGCAATGCGTTCCTGCGTTACGGACGTGTTAACATGTAAAATGTATATCAATATTGGGTTTACAGAAGAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCGCTTTCAGGCCTTGCGATCTCAATAAAACAATACATATGTTAAAAACAACGTAAACATATTTCTACACGGTACCGTCCTTCTAGATGCTTAGAACACCTAT
Unaligned ( gi|9 ): AAAACCTTTAATCAAACTGCCACATTTAACATATAAAAATGTTTAGTTCAATTATCAAGTCCATGTGTTCCTGAGTGACCATGTGTTAACGTATAAAAAGTATGACAATATTGTGCTTATGAAAGGTGCTTATGAAAGAAGGTCGCACATTTATAAACACAGCATATCCCACACCCCTATAATTAGCACCTTTGGACCTTATCAATTCAAACAAACAATATAGGTGTATAAAAAAATCAACAAAATCTATTTCTACATGTTACCATTCATCTAGCTGCTTGTTGAACCTATG
Unaligned ( gi|14 ): TGTGTTCCTGAGTTATGGATGTGTCAACATGTAAAATGTATGTCAATATTGCATTTAAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCACTTTCAGGCCTTGCCACCTCAATTAAACAATAAATAGTCTTTAAAAACAATNNNNNNNNNNTAAACAAAATATATTTCTACTGGTACT
Unaligned ( gi|15 ): TATGTCAATATGTTACAATGATTATTTTCAATTATCTACTATTCTGACAAGGTAACTATGGCCATCATGACGGTAATGTCGACATGTGCCCAGTTGAAGTCCAAACAAAAATATATCATTCCAAAATATAATCAAATCACAACTGGTTTACTCATAAATGTTTGATACGTGTCAAATATTCACTT
Unaligned ( gi|22 ): AAAATATATATATTTACGAAAGAATCCCTCACACTATCCCCCCTTTTGATAAGTGCTTGTAGGCAATGCCACCTCAGTTAAATAATACATA
Unaligned ( gi|23 ): GATTGCTTATTGATCTTAAAATATGTAGATTAGTGATATAATTATTTTACTGATATAAAAAAAATTATATGTGTTCAAAAAAAAGGT
Unaligned ( gi|26 ): ATTCTGACAACGTAACTATGGCCATCATGACGGTAGTATCGATATGTGCCCCGTTGAAGCCCACACAAAAA
Alignments
lowQualScore : 1111111 222222 1111111111 111111 2222222222 22222222222222 1111111
lowQualScore : 3 3333333 555555 7777 7777777777 777 66 666666 4 4 0 4 666 55 55 666 1 3 6 0 2 7777777777 0 55 55 9999999 99999 99999 3 99999999999999 44 66 6666666 888 0 3
lowQualScore : . ....... ...... .... .......... ... .. ...... . . . . ... .. .. ... . . . . . .......... . .. .. ....... ..... ..... . .............. .. .. ....... ... . .
lowQualScore : 6 0000000 555555 7777 5555555555 000 99 444444 4 4 8 4 222 88 55 000 9 3 7 1 3 3333333333 7 77 00 7777777 11111 11111 6 66666666666666 77 11 2222222 888 1 0
consensus : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
Reference ( family-4604 ) : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACANAAATATAAACACAAATCTTGTATNTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|10 : CAGGTCAAAGTATCGT--------ACC-TACAACGACCCTCCC-ACCCCTCCAAATAT----TTATGTGTTTTATATG--AATATAT-----ACAT-----GT-----TCATTTG-
gi|11 : TAGCGCACTGTTTGTTTT-AAAAGATG-ACAGTTGTCCACAACATCTACATATACTCGGATGATATGTA-AAAAGTCAATTACTTTATGGCA--GACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNN-----N-NN-----NN-----NNNNNNN-NNN---------NNN--NN-NNNA--TAT-------AAGATGATATTATCTTGACATCCTTggggaaaatgtaaaaaaatgtttctataaataatacgacaaggtaaccatgaccctcgtcacggcagtatcgatatgttgagactcgcatataaaagtttatcaacaaaaccaccacgttttacacacagattgatctgttcaaaaatatttacttcaa
gi|12 : TAGGCATGTGAGCT--GTGCACACAATGGCAGAACTTA------TTTCGGTCACTCGTGCGACCCCAAGTAAAGCACACTGTTTGGTTT-AAAAGAAG-ACGATCGTTCACAACATCTACATA-ATTC------TATGTGAAAAAAACAATTAATTGATGGCA--AACTTAAAATATGCACAGGTCAAAGT------------------------ACCCACCCTACGCACAAAAAT-TTGACACCAATCTTG-A---------GTTT-----G-AT-----GT-----TTATTTG-AAA------------------ATA--TAT-------AA---AATttt
gi|13 : ATGCACATGTCAAAGTATCGTACCT-GGGAC----------CCCACCCCACCCAC------CTAGACAAAAA---TGTATGTA--TGTGCTT-----T-AT-----ATGATTATCATTTGAAAA---------TATA-TA-TATATTTAT-------AC---G--ATTATTACTAGATCT
gi|16 : aaA-------TATAT------CTATGTACACAGT--AAG----TTCACCACCAA----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAATGGCAGAATA-------------GTCACTCGTGCGGCCGCAAGTTTAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAATATCTACATATACTCAGATGATATGTG-AAAAGTCatgtgtagatttgtgacataattatgtcactggtataagcaaaatcatgtgaccgttcataagtaatgta
gi|17 : TTTAG-ACAAAAATTGAAATGAGGTATGTTCCAAAACAGTATCAAAGAGCAAGAACAGTA-------TATATATGTATTCATGTAAACAGTGTAAG----GTCACAACCAC----------CA---GTAGAGGGAATAACAGTAGGCATGTGATGTGAGTGAACACA
gi|18 : TTTGG-ACAAAAATTGAAATAATGCATGTTTCAAAACCGTATCAAAGAGCAAGAACTATA-------TATATAC----TCATGTAAACAGTGTAAG----GTCACTACCAT----------CA---GTAGCGGGAATTATAGTCGACATGT
gi|19 : TTTGG-ACAAATATTGAATTGAGGCATGTTCCAAAACCGTATTAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGTGGGAATTACAGTAGGCATGT
gi|2 : TTTGG-ACGAAAATGGAAACGAGGCATGTCCCAAAACCGTATCAAAGAGGAAGAACAGTT-------TATAT------TCATGTAAACAGTGTAAG----GTGACTACCAC----------TA---GTAGCGGGACTTACAGTTGGCATGTGACGT--GTGCACAAAACTGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCTCACTGTTTGATTT-AAAAGAAG-ACATTCGTTCACAACATCTAAATATACTCAGATGATATGTG-AACAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACACAAATATAAACACAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|20 : CACAGGTCAAAGTATCGT--TTATAGGCC-CCCAAC-AC
gi|21 : ttataaactcatccaggtTTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTTTCAAAGAGCAAAAAATATA-------TATAT------TCATTTAAATAGTGTTAG----GTCACTACCAC----------CA---gtattttgtgtattataggtttatttgcaaaataaatacccacacacatatatattattcatgacat
gi|24 : TTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTACCAAAGAGCAAGAACAATA-------TATAT------TCATTTAAACAGTGTAAG----GT
gi|25 : CAGGTCAAAGTATCGTACCT-AGGAC------AC-ACC---------TACACAAAT-T--------ATTTTTTATATGATTATAAT--------AT-----AT-----TCATTTG-AAA---------
gi|27 : TTTGG-ACAAAG-TTAAAATGAGGTATGTTCAAAAACTGTATCAAAGAGCAAGAACAATat
gi|28 : TTGG-ACAAAGAATGAAATGAGGTATTTTCCAAAACCGTATCAAAGAGCAAGGACA
gi|3 : TTATGACACTGA---TAGATGT-CACAGTTCAAAGTATCATACCT-AGAACCTGAC-----CCCACCC-ATCCACAAAAAC---------------GTATTTA--TGTGTTTTATATG-ATAACACGT-----TCATTTG-AAAATAAACCAATACA-TA--ATA--TAT-------AA---GA---TATTGTGACAT
gi|4 : CATGTAAGCAGTGTA-GCCTCATCACCACCACGAACGATAACCA---GAAGTGGGAATTACAGTAGGTATGTGACGC--GTGCAAACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGTACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCACATGATATGAG-AAAAGTCA-------TATGGCA--TATTTTAAATATGCACAGGTTAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAAT------------CTTGTACTTG--TGTGTTT-----G-AT-----GC-----TCATTTG-AAA---------T-T--TATTATA--TAT-------TA---CATATTATTATGATATCTTTggttaccatgacgactataacggtagcatcgatatgctctcctgtcaggctcgcgtacaaaatatatgtcaacaaaatatttcaatcaaaccacaatgtttgtttccaacaacgcccgacgcgtttctgagctacgagcgtgtaaacatgtagaaagtatgtcactgcgatacttttgaaattcacatgatctccaggcgtttgcaaatcatgaaattcttttctggtaa
gi|5 : TTTTG-ACAAAAAATGAAATGAGGCATGTTCCTAAACCGTA-------GCAAGAACAGTA-------TATATATAT--TCGTGTAAACAGTGTCAG----GTCACCACCAC----------CA---GTAGTGG-AATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCAACCGCATGTATAGCGCACTGTTTGATTT-AAAATAAATACAGTCGTTCACAACATCTACATAT-------------GTG-AAAAGTCAATTACTTTATCGTA---ACTTTGA
gi|5 : TATCGTAACT-TTGACC-GACAAC-ACCCACCCAACGCACAAAAATATAAACACAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----TCATTTG-AAA---------GAT--TA-TATA--ccgacaacacccacccaacgcacaaaaatataaacacaaatcttgtatttgtgtgtttgatgttcatttgaaagattatata
gi|6 : ttttgacaaaaaatgaaatgaggcatgttcctaaaccgtagcaagaacagtatatatatattcgtgtaaacagtgtcaggtcaccaccaccagtagtggaattacagtaggcatgtgacgtgtgcacacaacggcagaacatattccggtcactcgtgcaaccgcatgtatagcgcactgtttgatttaaaataaatacagtcgttcacaacatctacatatgtgaaaagtcaattacttTTTGG-ACAAAAAATGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTATAAACATTATAC------TGATGTAAACAGTGTAAG----GTCACCACCAC----------CAAGTATAGCG
gi|6 : CAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAGTCGTCCACAACATCTACATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTTAAAGTATCATAACT-TGGACC-GACAAC-ACCCACCCTATGCACAAAAATATAAGCACAAATCTTGTA----------TTT-----G-AT-----GT-----TCATTCG-AAA---------CATTATA-TATA--TAT-------AA---GATATTATTATGACATCTTTcactgtttgatttaaaagaagacagtcgtccacaacatctacatatactcagatgatatgtgaaaagttaattactttatggcagactttaaatatgcacaggttaaagtatcataacttggaccgacaacacccaccctatgcacaaaaatataagcacaaatcttgtatttgatgttcattcgaaacattatatatatataagatattattatgacatcttt
gi|7 : tttggacaaaaaatgaaatgaggcatgttccaaaaccgtatcaaagagcaagaacagtataaacattatactgatgtaaacagtgtaaggtcaccaccacATGTGACGT--GTGCACACAAATGCAGAACATACTAGTATTCCGGTCACTTGTGCGGCCTCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCTTTCACAACATCTTTATATATTTAGATGATATGTG-TAAAGTCAATAACTTGATGGCA--GACTTTAAATTTGAACAGGCCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACAAAAATCTTGTATTTG--TGTGTTT-----G-AT-----GT-----ACTTTTG-AAA---------TAT--TA-TATA--TATATATATAAA---GATATTATTATGA-ATTTTT
gi|8 : TGGCACAAAAATTGAAATAAGACATGTTCCAACACCGTATCAACGAGCAAGAACAGTA-------TGTAT------TCATGTAAACGGTGTAAG----GTCACCACTAC----------CA---GTAGCAGGAAGTACAGAAGGCATGTGACGT--GTGCACACAACGACAGAACATA------TTCCGGTCACTCGTCCGACCGCTAGTATAGCTCACTGTTTGATTTAAAAAGAAG-ATAATCGTTCACAACATCTATATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGtttat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TATCTATGTGTTTTATATGATAATATATTTCTGTTTATTTGAAAAAAAAATATTATGACAAGGTAACCATGAACTTCGTCACGGCAGTATAGATAGGTGTTCCGTTGAGGACCACACAAAAAGTTTTTTAACAAAACATGTTATCAAACCACCACGTGTTACTCACAAATGCTTGATCTGTTCAAAAAGGTTTACTTCAACGATCAACGGCAATGCGTTCCTGCGTTACGGACGTGTTAACATGTAAAATGTATATCAATATTGGGTTTACAGAAGAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCGCTTTCAGGCCTTGCGATCTCAATAAAACAATACATATGTTAAAAACAACGTAAACATATTTCTACACGGTACCGTCCTTCTAGATGCTTAGAACACCTAT
Unaligned ( gi|9 ): AAAACCTTTAATCAAACTGCCACATTTAACATATAAAAATGTTTAGTTCAATTATCAAGTCCATGTGTTCCTGAGTGACCATGTGTTAACGTATAAAAAGTATGACAATATTGTGCTTATGAAAGGTGCTTATGAAAGAAGGTCGCACATTTATAAACACAGCATATCCCACACCCCTATAATTAGCACCTTTGGACCTTATCAATTCAAACAAACAATATAGGTGTATAAAAAAATCAACAAAATCTATTTCTACATGTTACCATTCATCTAGCTGCTTGTTGAACCTATG
Unaligned ( gi|14 ): TGTGTTCCTGAGTTATGGATGTGTCAACATGTAAAATGTATGTCAATATTGCATTTAAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCACTTTCAGGCCTTGCCACCTCAATTAAACAATAAATAGTCTTTAAAAACAATNNNNNNNNNNTAAACAAAATATATTTCTACTGGTACT
Unaligned ( gi|15 ): TATGTCAATATGTTACAATGATTATTTTCAATTATCTACTATTCTGACAAGGTAACTATGGCCATCATGACGGTAATGTCGACATGTGCCCAGTTGAAGTCCAAACAAAAATATATCATTCCAAAATATAATCAAATCACAACTGGTTTACTCATAAATGTTTGATACGTGTCAAATATTCACTT
Unaligned ( gi|22 ): AAAATATATATATTTACGAAAGAATCCCTCACACTATCCCCCCTTTTGATAAGTGCTTGTAGGCAATGCCACCTCAGTTAAATAATACATA
Unaligned ( gi|23 ): GATTGCTTATTGATCTTAAAATATGTAGATTAGTGATATAATTATTTTACTGATATAAAAAAAATTATATGTGTTCAAAAAAAAGGT
Unaligned ( gi|26 ): ATTCTGACAACGTAACTATGGCCATCATGACGGTAGTATCGATATGTGCCCCGTTGAAGCCCACACAAAAA
Alignments
lowQualScore : 1111111 222222 1111111111 111111 1 11111 11111 11111 33333333333333 1111111
lowQualScore : 3 3333333 555555 7777 7777777777 777 66 666666 4 4 0 4 666 55 55 666 1 3 2 1 11 22 2 44 0 11111 11111 11111 4 11111111111111 44 66 6666666 888 0 3
lowQualScore : . ....... ...... .... .......... ... .. ...... . . . . ... .. .. ... . . . . .. .. . .. . ..... ..... ..... . .............. .. .. ....... ... . .
lowQualScore : 6 0000000 555555 7777 5555555555 000 99 444444 4 4 8 4 222 88 55 000 9 3 1 1 11 44 9 88 3 11111 11111 11111 4 33333333333333 77 11 2222222 888 1 0
consensus : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
Reference ( family-4604 ) : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|10 : CAGGTCAAAGTATCGT--------ACC-TACAACGACCCTCCC
gi|11 : TAGCGCACTGTTTGTTTT-AAAAGATG-ACAGTTGTCCACAACATCTACATATACTCGGATGATATGTA-AAAAGTCAATTACTTTATGGCA--GACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN-----NN-----NNNNNNN-NNN---------NNN--NN-NNNA--TAT-------AAGATGATATTATCTTGACATCCTTacccctccaaatatttatgtgttttatatgaatatatacatgttcatttgggggaaaatgtaaaaaaatgtttctataaataatacgacaaggtaaccatgaccctcgtcacggcagtatcgatatgttgagactcgcatataaaagtttatcaacaaaaccaccacgttttacacacagattgatctgttcaaaaatatttacttcaa
gi|12 : TAGGCATGTGAGCT--GTGCACACAATGGCAGAACTTA------TTTCGGTCACTCGTGCGACCCCAAGTAAAGCACACTGTTTGGTTT-AAAAGAAG-ACGATCGTTCACAACATCTACATA-ATTC------TATGTGAAAAAAACAATTAATTGATGGCA--AACTTAAAATATGCACAGGTCAAAGT------------------------ACCCACCCTACGCACAAAAAT-TTGACACCAATCTTG-A-------GTTT-----GAT-----GT-----TTATTTG-AAA------------------ATA--TAT-------AA---AATttt
gi|13 : ATGCACATGTCAAAGTATCGTACCT-GGGAC----------CCCACCCCACCCAC------CTAGACAAAAA---TGTATGTATGTGCTT-----TAT-----ATGATTATCATTTGAAAA---------TATA-TA-TATATTTAT-------AC---G--ATTATTACTAGATCT
gi|16 : aaA-------TATAT------CTATGTACACAGT--AAG----TTCACCACCAA----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAATGGCAGAATA-------------GTCACTCGTGCGGCCGCAAGTTTAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAATATCTACATATACTCAGATGATATGTG-AAAAGTCatgtgtagatttgtgacataattatgtcactggtataagcaaaatcatgtgaccgttcataagtaatgta
gi|17 : TTTAG-ACAAAAATTGAAATGAGGTATGTTCCAAAACAGTATCAAAGAGCAAGAACAGTA-------TATATATGTATTCATGTAAACAGTGTAAG----GTCACAACCAC----------CA---GTAGAGGGAATAACAGTAGGCATGTGATGTGAGTGAACACA
gi|18 : TTTGG-ACAAAAATTGAAATAATGCATGTTTCAAAACCGTATCAAAGAGCAAGAACTATA-------TATATAC----TCATGTAAACAGTGTAAG----GTCACTACCAT----------CA---GTAGCGGGAATTATAGTCGACATGT
gi|19 : TTTGG-ACAAATATTGAATTGAGGCATGTTCCAAAACCGTATTAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGTGGGAATTACAGTAGGCATGT
gi|2 : TTTGG-ACGAAAATGGAAACGAGGCATGTCCCAAAACCGTATCAAAGAGGAAGAACAGTT-------TATAT------TCATGTAAACAGTGTAAG----GTGACTACCAC----------TA---GTAGCGGGACTTACAGTTGGCATGTGACGT--GTGCACAAAACTGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCTCACTGTTTGATTT-AAAAGAAG-ACATTCGTTCACAACATCTAAATATACTCAGATGATATGTG-AACAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACACAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|20 : CACAGGTCAAAGTATCGT--TTATAGGCC-CCCAAC-AC
gi|21 : ttataaactcatccaggtTTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTTTCAAAGAGCAAAAAATATA-------TATAT------TCATTTAAATAGTGTTAG----GTCACTACCAC----------CA---gtattttgtgtattataggtttatttgcaaaataaatacccacacacatatatattattcatgacat
gi|24 : TTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTACCAAAGAGCAAGAACAATA-------TATAT------TCATTTAAACAGTGTAAG----GT
gi|25 : CAGGTCAAAGTATCGTACCT-AGGAC------AC-ACCTAC
gi|27 : TTTGG-ACAAAG-TTAAAATGAGGTATGTTCAAAAACTGTATCAAAGAGCAAGAACAATacaaattattttttatatgattataatatattcatttgaaaat
gi|28 : TTGG-ACAAAGAATGAAATGAGGTATTTTCCAAAACCGTATCAAAGAGCAAGGACA
gi|3 : TTATGACACTGA---TAGATGT-CACAGTTCAAAGTATCATACCT-AGAACCTGAC-----CCCACCC-ATCCACAAAAAC---------------GTATTTATGTGTTTTATATGATAACACGT-----TCATTTG-AAAATAAACCAATACA-TA--ATA--TAT-------AA---GA---TATTGTGACAT
gi|4 : CATGTAAGCAGTGTA-GCCTCATCACCACCACGAACGATAACCA---GAAGTGGGAATTACAGTAGGTATGTGACGC--GTGCAAACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGTACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCACATGATATGAG-AAAAGTCA-------TATGGCA--TATTTTAAATATGCACAGGTTAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAAT------------CTTGTACTTGTGTGTTT-----GAT-----GC-----TCATTTG-AAA---------T-T--TATTATA--TAT-------TA---CATATTATTATGATATCTTTggttaccatgacgactataacggtagcatcgatatgctctcctgtcaggctcgcgtacaaaatatatgtcaacaaaatatttcaatcaaaccacaatgtttgtttccaacaacgcccgacgcgtttctgagctacgagcgtgtaaacatgtagaaagtatgtcactgcgatacttttgaaattcacatgatctccaggcgtttgcaaatcatgaaattcttttctggtaa
gi|5 : TTTTG-ACAAAAAATGAAATGAGGCATGTTCCTAAACCGTA-------GCAAGAACAGTA-------TATATATAT--TCGTGTAAACAGTGTCAG----GTCACCACCAC----------CA---GTAGTGG-AATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCAACCGCATGTATAGCGCACTGTTTGATTT-AAAATAAATACAGTCGTTCACAACATCTACATAT-------------GTG-AAAAGTCAATTACTTTATCGTA---ACTTTGA
gi|5 : TATCGTAACT-TTGACC-GACAAC-ACCCACCCAACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------GAT--TA-TATA--ccgacaacacccacccaacgcacaaaaatataaacacaaatcttgtatttgtgtgtttgatgttcatttgaaagattatata
gi|6 : ttttgacaaaaaatgaaatgaggcatgttcctaaaccgtagcaagaacagtatatatatattcgtgtaaacagtgtcaggtcaccaccaccagtagtggaattacagtaggcatgtgacgtgtgcacacaacggcagaacatattccggtcactcgtgcaaccgcatgtatagcgcactgtttgatttaaaataaatacagtcgttcacaacatctacatatgtgaaaagtcaattacttTTTGG-ACAAAAAATGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTATAAACATTATAC------TGATGTAAACAGTGTAAG----GTCACCACCAC----------CAAGTATAGCG
gi|6 : CAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAGTCGTCCACAACATCTACATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTTAAAGTATCATAACT-TGGACC-GACAAC-ACCCACCCTATGCACAAAAATATAAGCACAAATCTTGTA--------TTT-----GAT-----GT-----TCATTCG-AAA---------CATTATA-TATA--TAT-------AA---GATATTATTATGACATCTTTcactgtttgatttaaaagaagacagtcgtccacaacatctacatatactcagatgatatgtgaaaagttaattactttatggcagactttaaatatgcacaggttaaagtatcataacttggaccgacaacacccaccctatgcacaaaaatataagcacaaatcttgtatttgatgttcattcgaaacattatatatatataagatattattatgacatcttt
gi|7 : tttggacaaaaaatgaaatgaggcatgttccaaaaccgtatcaaagagcaagaacagtataaacattatactgatgtaaacagtgtaaggtcaccaccacATGTGACGT--GTGCACACAAATGCAGAACATACTAGTATTCCGGTCACTTGTGCGGCCTCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCTTTCACAACATCTTTATATATTTAGATGATATGTG-TAAAGTCAATAACTTGATGGCA--GACTTTAAATTTGAACAGGCCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACAAAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----ACTTTTG-AAA---------TAT--TA-TATA--TATATATATAAA---GATATTATTATGA-ATTTTT
gi|8 : TGGCACAAAAATTGAAATAAGACATGTTCCAACACCGTATCAACGAGCAAGAACAGTA-------TGTAT------TCATGTAAACGGTGTAAG----GTCACCACTAC----------CA---GTAGCAGGAAGTACAGAAGGCATGTGACGT--GTGCACACAACGACAGAACATA------TTCCGGTCACTCGTCCGACCGCTAGTATAGCTCACTGTTTGATTTAAAAAGAAG-ATAATCGTTCACAACATCTATATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGtttat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TATCTATGTGTTTTATATGATAATATATTTCTGTTTATTTGAAAAAAAAATATTATGACAAGGTAACCATGAACTTCGTCACGGCAGTATAGATAGGTGTTCCGTTGAGGACCACACAAAAAGTTTTTTAACAAAACATGTTATCAAACCACCACGTGTTACTCACAAATGCTTGATCTGTTCAAAAAGGTTTACTTCAACGATCAACGGCAATGCGTTCCTGCGTTACGGACGTGTTAACATGTAAAATGTATATCAATATTGGGTTTACAGAAGAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCGCTTTCAGGCCTTGCGATCTCAATAAAACAATACATATGTTAAAAACAACGTAAACATATTTCTACACGGTACCGTCCTTCTAGATGCTTAGAACACCTAT
Unaligned ( gi|9 ): AAAACCTTTAATCAAACTGCCACATTTAACATATAAAAATGTTTAGTTCAATTATCAAGTCCATGTGTTCCTGAGTGACCATGTGTTAACGTATAAAAAGTATGACAATATTGTGCTTATGAAAGGTGCTTATGAAAGAAGGTCGCACATTTATAAACACAGCATATCCCACACCCCTATAATTAGCACCTTTGGACCTTATCAATTCAAACAAACAATATAGGTGTATAAAAAAATCAACAAAATCTATTTCTACATGTTACCATTCATCTAGCTGCTTGTTGAACCTATG
Unaligned ( gi|14 ): TGTGTTCCTGAGTTATGGATGTGTCAACATGTAAAATGTATGTCAATATTGCATTTAAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCACTTTCAGGCCTTGCCACCTCAATTAAACAATAAATAGTCTTTAAAAACAATNNNNNNNNNNTAAACAAAATATATTTCTACTGGTACT
Unaligned ( gi|15 ): TATGTCAATATGTTACAATGATTATTTTCAATTATCTACTATTCTGACAAGGTAACTATGGCCATCATGACGGTAATGTCGACATGTGCCCAGTTGAAGTCCAAACAAAAATATATCATTCCAAAATATAATCAAATCACAACTGGTTTACTCATAAATGTTTGATACGTGTCAAATATTCACTT
Unaligned ( gi|22 ): AAAATATATATATTTACGAAAGAATCCCTCACACTATCCCCCCTTTTGATAAGTGCTTGTAGGCAATGCCACCTCAGTTAAATAATACATA
Unaligned ( gi|23 ): GATTGCTTATTGATCTTAAAATATGTAGATTAGTGATATAATTATTTTACTGATATAAAAAAAATTATATGTGTTCAAAAAAAAGGT
Unaligned ( gi|26 ): ATTCTGACAACGTAACTATGGCCATCATGACGGTAGTATCGATATGTGCCCCGTTGAAGCCCACACAAAAA
Alignments
lowQualScore : 1111111 222222 1111111111 111111 1 11111 11111 11111 33333333333333 1111111
lowQualScore : 3 3333333 555555 7777 7777777777 777 66 666666 4 4 0 4 666 55 55 666 1 3 2 1 11 22 2 44 0 11111 11111 11111 4 11111111111111 44 66 6666666 888 0 3
lowQualScore : . ....... ...... .... .......... ... .. ...... . . . . ... .. .. ... . . . . .. .. . .. . ..... ..... ..... . .............. .. .. ....... ... . .
lowQualScore : 6 0000000 555555 7777 5555555555 000 99 444444 4 4 8 4 222 88 55 000 9 3 1 1 11 44 9 88 3 11111 11111 11111 4 33333333333333 77 11 2222222 888 1 0
consensus : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
Reference ( family-4604 ) : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|10 : CAGGTCAAAGTATCGT--------ACC-TACAACGACCCTCCC
gi|11 : TAGCGCACTGTTTGTTTT-AAAAGATG-ACAGTTGTCCACAACATCTACATATACTCGGATGATATGTA-AAAAGTCAATTACTTTATGGCA--GACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN-----NN-----NNNNNNN-NNN---------NNN--NN-NNNA--TAT-------AAGATGATATTATCTTGACATCCTTacccctccaaatatttatgtgttttatatgaatatatacatgttcatttgggggaaaatgtaaaaaaatgtttctataaataatacgacaaggtaaccatgaccctcgtcacggcagtatcgatatgttgagactcgcatataaaagtttatcaacaaaaccaccacgttttacacacagattgatctgttcaaaaatatttacttcaa
gi|12 : TAGGCATGTGAGCT--GTGCACACAATGGCAGAACTTA------TTTCGGTCACTCGTGCGACCCCAAGTAAAGCACACTGTTTGGTTT-AAAAGAAG-ACGATCGTTCACAACATCTACATA-ATTC------TATGTGAAAAAAACAATTAATTGATGGCA--AACTTAAAATATGCACAGGTCAAAGT------------------------ACCCACCCTACGCACAAAAAT-TTGACACCAATCTTG-A-------GTTT-----GAT-----GT-----TTATTTG-AAA------------------ATA--TAT-------AA---AATttt
gi|13 : ATGCACATGTCAAAGTATCGTACCT-GGGAC----------CCCACCCCACCCAC------CTAGACAAAAA---TGTATGTATGTGCTT-----TAT-----ATGATTATCATTTGAAAA---------TATA-TA-TATATTTAT-------AC---G--ATTATTACTAGATCT
gi|16 : aaA-------TATAT------CTATGTACACAGT--AAG----TTCACCACCAA----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAATGGCAGAATA-------------GTCACTCGTGCGGCCGCAAGTTTAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAATATCTACATATACTCAGATGATATGTG-AAAAGTCatgtgtagatttgtgacataattatgtcactggtataagcaaaatcatgtgaccgttcataagtaatgta
gi|17 : TTTAG-ACAAAAATTGAAATGAGGTATGTTCCAAAACAGTATCAAAGAGCAAGAACAGTA-------TATATATGTATTCATGTAAACAGTGTAAG----GTCACAACCAC----------CA---GTAGAGGGAATAACAGTAGGCATGTGATGTGAGTGAACACA
gi|18 : TTTGG-ACAAAAATTGAAATAATGCATGTTTCAAAACCGTATCAAAGAGCAAGAACTATA-------TATATAC----TCATGTAAACAGTGTAAG----GTCACTACCAT----------CA---GTAGCGGGAATTATAGTCGACATGT
gi|19 : TTTGG-ACAAATATTGAATTGAGGCATGTTCCAAAACCGTATTAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGTGGGAATTACAGTAGGCATGT
gi|2 : TTTGG-ACGAAAATGGAAACGAGGCATGTCCCAAAACCGTATCAAAGAGGAAGAACAGTT-------TATAT------TCATGTAAACAGTGTAAG----GTGACTACCAC----------TA---GTAGCGGGACTTACAGTTGGCATGTGACGT--GTGCACAAAACTGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCTCACTGTTTGATTT-AAAAGAAG-ACATTCGTTCACAACATCTAAATATACTCAGATGATATGTG-AACAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACACAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|20 : CACAGGTCAAAGTATCGT--TTATAGGCC-CCCAAC-AC
gi|21 : ttataaactcatccaggtTTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTTTCAAAGAGCAAAAAATATA-------TATAT------TCATTTAAATAGTGTTAG----GTCACTACCAC----------CA---gtattttgtgtattataggtttatttgcaaaataaatacccacacacatatatattattcatgacat
gi|24 : TTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTACCAAAGAGCAAGAACAATA-------TATAT------TCATTTAAACAGTGTAAG----GT
gi|25 : CAGGTCAAAGTATCGTACCT-AGGAC------AC-ACCTAC
gi|27 : TTTGG-ACAAAG-TTAAAATGAGGTATGTTCAAAAACTGTATCAAAGAGCAAGAACAATacaaattattttttatatgattataatatattcatttgaaaat
gi|28 : TTGG-ACAAAGAATGAAATGAGGTATTTTCCAAAACCGTATCAAAGAGCAAGGACA
gi|3 : TTATGACACTGA---TAGATGT-CACAGTTCAAAGTATCATACCT-AGAACCTGAC-----CCCACCC-ATCCACAAAAAC---------------GTATTTATGTGTTTTATATGATAACACGT-----TCATTTG-AAAATAAACCAATACA-TA--ATA--TAT-------AA---GA---TATTGTGACAT
gi|4 : CATGTAAGCAGTGTA-GCCTCATCACCACCACGAACGATAACCA---GAAGTGGGAATTACAGTAGGTATGTGACGC--GTGCAAACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGTACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCACATGATATGAG-AAAAGTCA-------TATGGCA--TATTTTAAATATGCACAGGTTAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAAT------------CTTGTACTTGTGTGTTT-----GAT-----GC-----TCATTTG-AAA---------T-T--TATTATA--TAT-------TA---CATATTATTATGATATCTTTggttaccatgacgactataacggtagcatcgatatgctctcctgtcaggctcgcgtacaaaatatatgtcaacaaaatatttcaatcaaaccacaatgtttgtttccaacaacgcccgacgcgtttctgagctacgagcgtgtaaacatgtagaaagtatgtcactgcgatacttttgaaattcacatgatctccaggcgtttgcaaatcatgaaattcttttctggtaa
gi|5 : TTTTG-ACAAAAAATGAAATGAGGCATGTTCCTAAACCGTA-------GCAAGAACAGTA-------TATATATAT--TCGTGTAAACAGTGTCAG----GTCACCACCAC----------CA---GTAGTGG-AATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCAACCGCATGTATAGCGCACTGTTTGATTT-AAAATAAATACAGTCGTTCACAACATCTACATAT-------------GTG-AAAAGTCAATTACTTTATCGTA---ACTTTGA
gi|5 : TATCGTAACT-TTGACC-GACAAC-ACCCACCCAACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------GAT--TA-TATA--ccgacaacacccacccaacgcacaaaaatataaacacaaatcttgtatttgtgtgtttgatgttcatttgaaagattatata
gi|6 : ttttgacaaaaaatgaaatgaggcatgttcctaaaccgtagcaagaacagtatatatatattcgtgtaaacagtgtcaggtcaccaccaccagtagtggaattacagtaggcatgtgacgtgtgcacacaacggcagaacatattccggtcactcgtgcaaccgcatgtatagcgcactgtttgatttaaaataaatacagtcgttcacaacatctacatatgtgaaaagtcaattacttTTTGG-ACAAAAAATGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTATAAACATTATAC------TGATGTAAACAGTGTAAG----GTCACCACCAC----------CAAGTATAGCG
gi|6 : CAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAGTCGTCCACAACATCTACATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTTAAAGTATCATAACT-TGGACC-GACAAC-ACCCACCCTATGCACAAAAATATAAGCACAAATCTTGTA--------TTT-----GAT-----GT-----TCATTCG-AAA---------CATTATA-TATA--TAT-------AA---GATATTATTATGACATCTTTcactgtttgatttaaaagaagacagtcgtccacaacatctacatatactcagatgatatgtgaaaagttaattactttatggcagactttaaatatgcacaggttaaagtatcataacttggaccgacaacacccaccctatgcacaaaaatataagcacaaatcttgtatttgatgttcattcgaaacattatatatatataagatattattatgacatcttt
gi|7 : tttggacaaaaaatgaaatgaggcatgttccaaaaccgtatcaaagagcaagaacagtataaacattatactgatgtaaacagtgtaaggtcaccaccacATGTGACGT--GTGCACACAAATGCAGAACATACTAGTATTCCGGTCACTTGTGCGGCCTCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCTTTCACAACATCTTTATATATTTAGATGATATGTG-TAAAGTCAATAACTTGATGGCA--GACTTTAAATTTGAACAGGCCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACAAAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----ACTTTTG-AAA---------TAT--TA-TATA--TATATATATAAA---GATATTATTATGA-ATTTTT
gi|8 : TGGCACAAAAATTGAAATAAGACATGTTCCAACACCGTATCAACGAGCAAGAACAGTA-------TGTAT------TCATGTAAACGGTGTAAG----GTCACCACTAC----------CA---GTAGCAGGAAGTACAGAAGGCATGTGACGT--GTGCACACAACGACAGAACATA------TTCCGGTCACTCGTCCGACCGCTAGTATAGCTCACTGTTTGATTTAAAAAGAAG-ATAATCGTTCACAACATCTATATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGtttat
blockSeqs : C TAAACAT ATGTAT CCTC GAACGATAAC AGT GA CTAGTA A T A CTG NN AT CTG N . T C TG CC T TG TATAT AACAC GATTA A ATAAACCAATACA TT TT ATATATA . G
blockSeqs : . . ATAT . . . . . . . . A AC N NN A . C A AG AA T TT . . . . CATTA T . . . C
blockSeqs : . . AC . . . . . . . . G AA G CG A . T A AA CA T TT . . . . TATA T . . . C
blockSeqs : . . . . . . . . . . . T AC T CC A . T A AA CA T CT . . . . TAT T . . . T
blockSeqs : . . . . . . . . . . . G AC A CG A . A A AA CA T TT . . . . GAT T . . . C
blockSeqs : . . . . . . . . . . . G AA A CG A . T . AA AA . TT . . . . TAT T . . . .
blockSeqs : . . . . . . . . . . G AA T CG A . T . . . . . . . . . TT . . . .
blockSeqs : . . . . . . . . . . AA T CG . . . . . . . . . . . . . . .
blockSeqs : . . . . . . AA T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . . .
blockSeqCons : AA T* ***
originalCons : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
finalCons : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACTT-GGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TATCTATGTGTTTTATATGATAATATATTTCTGTTTATTTGAAAAAAAAATATTATGACAAGGTAACCATGAACTTCGTCACGGCAGTATAGATAGGTGTTCCGTTGAGGACCACACAAAAAGTTTTTTAACAAAACATGTTATCAAACCACCACGTGTTACTCACAAATGCTTGATCTGTTCAAAAAGGTTTACTTCAACGATCAACGGCAATGCGTTCCTGCGTTACGGACGTGTTAACATGTAAAATGTATATCAATATTGGGTTTACAGAAGAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCGCTTTCAGGCCTTGCGATCTCAATAAAACAATACATATGTTAAAAACAACGTAAACATATTTCTACACGGTACCGTCCTTCTAGATGCTTAGAACACCTAT
Unaligned ( gi|9 ): AAAACCTTTAATCAAACTGCCACATTTAACATATAAAAATGTTTAGTTCAATTATCAAGTCCATGTGTTCCTGAGTGACCATGTGTTAACGTATAAAAAGTATGACAATATTGTGCTTATGAAAGGTGCTTATGAAAGAAGGTCGCACATTTATAAACACAGCATATCCCACACCCCTATAATTAGCACCTTTGGACCTTATCAATTCAAACAAACAATATAGGTGTATAAAAAAATCAACAAAATCTATTTCTACATGTTACCATTCATCTAGCTGCTTGTTGAACCTATG
Unaligned ( gi|14 ): TGTGTTCCTGAGTTATGGATGTGTCAACATGTAAAATGTATGTCAATATTGCATTTAAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCACTTTCAGGCCTTGCCACCTCAATTAAACAATAAATAGTCTTTAAAAACAATNNNNNNNNNNTAAACAAAATATATTTCTACTGGTACT
Unaligned ( gi|15 ): TATGTCAATATGTTACAATGATTATTTTCAATTATCTACTATTCTGACAAGGTAACTATGGCCATCATGACGGTAATGTCGACATGTGCCCAGTTGAAGTCCAAACAAAAATATATCATTCCAAAATATAATCAAATCACAACTGGTTTACTCATAAATGTTTGATACGTGTCAAATATTCACTT
Unaligned ( gi|22 ): AAAATATATATATTTACGAAAGAATCCCTCACACTATCCCCCCTTTTGATAAGTGCTTGTAGGCAATGCCACCTCAGTTAAATAATACATA
Unaligned ( gi|23 ): GATTGCTTATTGATCTTAAAATATGTAGATTAGTGATATAATTATTTTACTGATATAAAAAAAATTATATGTGTTCAAAAAAAAGGT
Unaligned ( gi|26 ): ATTCTGACAACGTAACTATGGCCATCATGACGGTAGTATCGATATGTGCCCCGTTGAAGCCCACACAAAAA
Alignments
lowQualScore : 1111111 222222 1111111111 111111 1 11111 11111 11111 33333333333333 1111111
lowQualScore : 3 3333333 555555 7777 7777777777 777 66 666666 4 4 0 4 666 55 55 666 1 3 2 1 11 22 2 44 0 11111 11111 11111 4 11111111111111 44 66 6666666 888 0 3
lowQualScore : . ....... ...... .... .......... ... .. ...... . . . . ... .. .. ... . . . . .. .. . .. . ..... ..... ..... . .............. .. .. ....... ... . .
lowQualScore : 6 0000000 555555 7777 5555555555 000 99 444444 4 4 8 4 222 88 55 000 9 3 1 1 11 44 9 88 3 11111 11111 11111 4 33333333333333 77 11 2222222 888 1 0
consensus : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
Reference ( family-4604 ) : TTTGG-ACAAAAATTGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCAGATGATATGTG-AAAAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|10 : CAGGTCAAAGTATCGT--------ACC-TACAACGACCCTCCC
gi|11 : TAGCGCACTGTTTGTTTT-AAAAGATG-ACAGTTGTCCACAACATCTACATATACTCGGATGATATGTA-AAAAGTCAATTACTTTATGGCA--GACTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNN-----NN-----NNNNNNN-NNN---------NNN--NN-NNNA--TAT-------AAGATGATATTATCTTGACATCCTTacccctccaaatatttatgtgttttatatgaatatatacatgttcatttgggggaaaatgtaaaaaaatgtttctataaataatacgacaaggtaaccatgaccctcgtcacggcagtatcgatatgttgagactcgcatataaaagtttatcaacaaaaccaccacgttttacacacagattgatctgttcaaaaatatttacttcaa
gi|12 : TAGGCATGTGAGCT--GTGCACACAATGGCAGAACTTA------TTTCGGTCACTCGTGCGACCCCAAGTAAAGCACACTGTTTGGTTT-AAAAGAAG-ACGATCGTTCACAACATCTACATA-ATTC------TATGTGAAAAAAACAATTAATTGATGGCA--AACTTAAAATATGCACAGGTCAAAGT------------------------ACCCACCCTACGCACAAAAAT-TTGACACCAATCTTG-A-------GTTT-----GAT-----GT-----TTATTTG-AAA------------------ATA--TAT-------AA---AATttt
gi|13 : ATGCACATGTCAAAGTATCGTACCT-GGGAC----------CCCACCCCACCCAC------CTAGACAAAAA---TGTATGTATGTGCTT-----TAT-----ATGATTATCATTTGAAAA---------TATA-TA-TATATTTAT-------AC---G--ATTATTACTAGATCT
gi|16 : aaA-------TATAT------CTATGTACACAGT--AAG----TTCACCACCAA----------CA---GTAGCGGGAATTACAGTAGGCATGTGACGT--GTGCACACAATGGCAGAATA-------------GTCACTCGTGCGGCCGCAAGTTTAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAATATCTACATATACTCAGATGATATGTG-AAAAGTCatgtgtagatttgtgacataattatgtcactggtataagcaaaatcatgtgaccgttcataagtaatgta
gi|17 : TTTAG-ACAAAAATTGAAATGAGGTATGTTCCAAAACAGTATCAAAGAGCAAGAACAGTA-------TATATATGTATTCATGTAAACAGTGTAAG----GTCACAACCAC----------CA---GTAGAGGGAATAACAGTAGGCATGTGATGTGAGTGAACACA
gi|18 : TTTGG-ACAAAAATTGAAATAATGCATGTTTCAAAACCGTATCAAAGAGCAAGAACTATA-------TATATAC----TCATGTAAACAGTGTAAG----GTCACTACCAT----------CA---GTAGCGGGAATTATAGTCGACATGT
gi|19 : TTTGG-ACAAATATTGAATTGAGGCATGTTCCAAAACCGTATTAAAGAGCAAGAACAGTA-------TATAT------TCATGTAAACAGTGTAAG----GTCACCACCAC----------CA---GTAGTGGGAATTACAGTAGGCATGT
gi|2 : TTTGG-ACGAAAATGGAAACGAGGCATGTCCCAAAACCGTATCAAAGAGGAAGAACAGTT-------TATAT------TCATGTAAACAGTGTAAG----GTGACTACCAC----------TA---GTAGCGGGACTTACAGTTGGCATGTGACGT--GTGCACAAAACTGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCTCACTGTTTGATTT-AAAAGAAG-ACATTCGTTCACAACATCTAAATATACTCAGATGATATGTG-AACAGTCAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACACAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------TAT--TA-TATA--TAT-------AA---GATATTATTATGACATCTTT
gi|20 : CACAGGTCAAAGTATCGT--TTATAGGCC-CCCAAC-AC
gi|21 : ttataaactcatccaggtTTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTTTCAAAGAGCAAAAAATATA-------TATAT------TCATTTAAATAGTGTTAG----GTCACTACCAC----------CA---gtattttgtgtattataggtttatttgcaaaataaatacccacacacatatatattattcatgacat
gi|24 : TTTGG-ACAAAAATTGAAATGAGGCATGTTACAAAACCGTACCAAAGAGCAAGAACAATA-------TATAT------TCATTTAAACAGTGTAAG----GT
gi|25 : CAGGTCAAAGTATCGTACCT-AGGAC------AC-ACCTAC
gi|27 : TTTGG-ACAAAG-TTAAAATGAGGTATGTTCAAAAACTGTATCAAAGAGCAAGAACAATacaaattattttttatatgattataatatattcatttgaaaat
gi|28 : TTGG-ACAAAGAATGAAATGAGGTATTTTCCAAAACCGTATCAAAGAGCAAGGACA
gi|3 : TTATGACACTGA---TAGATGT-CACAGTTCAAAGTATCATACCT-AGAACCTGAC-----CCCACCC-ATCCACAAAAAC---------------GTATTTATGTGTTTTATATGATAACACGT-----TCATTTG-AAAATAAACCAATACA-TA--ATA--TAT-------AA---GA---TATTGTGACAT
gi|4 : CATGTAAGCAGTGTA-GCCTCATCACCACCACGAACGATAACCA---GAAGTGGGAATTACAGTAGGTATGTGACGC--GTGCAAACAACGGCAGAACATA------TTCCGGTCACTCGTGCGACCGCAAGTATAGCGTACTGTTTGATTT-AAAAGAAG-ACAATCGTTCACAACATCTACATATACTCACATGATATGAG-AAAAGTCA-------TATGGCA--TATTTTAAATATGCACAGGTTAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAAT------------CTTGTACTTGTGTGTTT-----GAT-----GC-----TCATTTG-AAA---------T-T--TATTATA--TAT-------TA---CATATTATTATGATATCTTTggttaccatgacgactataacggtagcatcgatatgctctcctgtcaggctcgcgtacaaaatatatgtcaacaaaatatttcaatcaaaccacaatgtttgtttccaacaacgcccgacgcgtttctgagctacgagcgtgtaaacatgtagaaagtatgtcactgcgatacttttgaaattcacatgatctccaggcgtttgcaaatcatgaaattcttttctggtaa
gi|5 : TTTTG-ACAAAAAATGAAATGAGGCATGTTCCTAAACCGTA-------GCAAGAACAGTA-------TATATATAT--TCGTGTAAACAGTGTCAG----GTCACCACCAC----------CA---GTAGTGG-AATTACAGTAGGCATGTGACGT--GTGCACACAACGGCAGAACATA------TTCCGGTCACTCGTGCAACCGCATGTATAGCGCACTGTTTGATTT-AAAATAAATACAGTCGTTCACAACATCTACATAT-------------GTG-AAAAGTCAATTACTTTATCGTA---ACTTTGA
gi|5 : TATCGTAACT-TTGACC-GACAAC-ACCCACCCAACGCACAAAAATATAAACACAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----TCATTTG-AAA---------GAT--TA-TATA--ccgacaacacccacccaacgcacaaaaatataaacacaaatcttgtatttgtgtgtttgatgttcatttgaaagattatata
gi|6 : ttttgacaaaaaatgaaatgaggcatgttcctaaaccgtagcaagaacagtatatatatattcgtgtaaacagtgtcaggtcaccaccaccagtagtggaattacagtaggcatgtgacgtgtgcacacaacggcagaacatattccggtcactcgtgcaaccgcatgtatagcgcactgtttgatttaaaataaatacagtcgttcacaacatctacatatgtgaaaagtcaattacttTTTGG-ACAAAAAATGAAATGAGGCATGTTCCAAAACCGTATCAAAGAGCAAGAACAGTATAAACATTATAC------TGATGTAAACAGTGTAAG----GTCACCACCAC----------CAAGTATAGCG
gi|6 : CAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAGTCGTCCACAACATCTACATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTTAAAGTATCATAACT-TGGACC-GACAAC-ACCCACCCTATGCACAAAAATATAAGCACAAATCTTGTA--------TTT-----GAT-----GT-----TCATTCG-AAA---------CATTATA-TATA--TAT-------AA---GATATTATTATGACATCTTTcactgtttgatttaaaagaagacagtcgtccacaacatctacatatactcagatgatatgtgaaaagttaattactttatggcagactttaaatatgcacaggttaaagtatcataacttggaccgacaacacccaccctatgcacaaaaatataagcacaaatcttgtatttgatgttcattcgaaacattatatatatataagatattattatgacatcttt
gi|7 : tttggacaaaaaatgaaatgaggcatgttccaaaaccgtatcaaagagcaagaacagtataaacattatactgatgtaaacagtgtaaggtcaccaccacATGTGACGT--GTGCACACAAATGCAGAACATACTAGTATTCCGGTCACTTGTGCGGCCTCAAGTATAGCGCACTGTTTGATTT-AAAAGAAG-ACAATCTTTCACAACATCTTTATATATTTAGATGATATGTG-TAAAGTCAATAACTTGATGGCA--GACTTTAAATTTGAACAGGCCAAAGTATCGTAACT-TGGACC-GACAAC-ACCCACCCTACGCACAAAAATATAAACAAAAATCTTGTATTTGTGTGTTT-----GAT-----GT-----ACTTTTG-AAA---------TAT--TA-TATA--TATATATATAAA---GATATTATTATGA-ATTTTT
gi|8 : TGGCACAAAAATTGAAATAAGACATGTTCCAACACCGTATCAACGAGCAAGAACAGTA-------TGTAT------TCATGTAAACGGTGTAAG----GTCACCACTAC----------CA---GTAGCAGGAAGTACAGAAGGCATGTGACGT--GTGCACACAACGACAGAACATA------TTCCGGTCACTCGTCCGACCGCTAGTATAGCTCACTGTTTGATTTAAAAAGAAG-ATAATCGTTCACAACATCTATATATACTCAGATGATATGTG-AAAAGTTAATTACTTTATGGCA--GACTTTAAATATGCACAGGTCAAAGTATCGtttat
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TATCTATGTGTTTTATATGATAATATATTTCTGTTTATTTGAAAAAAAAATATTATGACAAGGTAACCATGAACTTCGTCACGGCAGTATAGATAGGTGTTCCGTTGAGGACCACACAAAAAGTTTTTTAACAAAACATGTTATCAAACCACCACGTGTTACTCACAAATGCTTGATCTGTTCAAAAAGGTTTACTTCAACGATCAACGGCAATGCGTTCCTGCGTTACGGACGTGTTAACATGTAAAATGTATATCAATATTGGGTTTACAGAAGAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCGCTTTCAGGCCTTGCGATCTCAATAAAACAATACATATGTTAAAAACAACGTAAACATATTTCTACACGGTACCGTCCTTCTAGATGCTTAGAACACCTAT
Unaligned ( gi|9 ): AAAACCTTTAATCAAACTGCCACATTTAACATATAAAAATGTTTAGTTCAATTATCAAGTCCATGTGTTCCTGAGTGACCATGTGTTAACGTATAAAAAGTATGACAATATTGTGCTTATGAAAGGTGCTTATGAAAGAAGGTCGCACATTTATAAACACAGCATATCCCACACCCCTATAATTAGCACCTTTGGACCTTATCAATTCAAACAAACAATATAGGTGTATAAAAAAATCAACAAAATCTATTTCTACATGTTACCATTCATCTAGCTGCTTGTTGAACCTATG
Unaligned ( gi|14 ): TGTGTTCCTGAGTTATGGATGTGTCAACATGTAAAATGTATGTCAATATTGCATTTAAATCCCACACATTTGTAAACACAAAATTCTCCCTTATAATAAGCACTTTCAGGCCTTGCCACCTCAATTAAACAATAAATAGTCTTTAAAAACAATNNNNNNNNNNTAAACAAAATATATTTCTACTGGTACT
Unaligned ( gi|15 ): TATGTCAATATGTTACAATGATTATTTTCAATTATCTACTATTCTGACAAGGTAACTATGGCCATCATGACGGTAATGTCGACATGTGCCCAGTTGAAGTCCAAACAAAAATATATCATTCCAAAATATAATCAAATCACAACTGGTTTACTCATAAATGTTTGATACGTGTCAAATATTCACTT
Unaligned ( gi|22 ): AAAATATATATATTTACGAAAGAATCCCTCACACTATCCCCCCTTTTGATAAGTGCTTGTAGGCAATGCCACCTCAGTTAAATAATACATA
Unaligned ( gi|23 ): GATTGCTTATTGATCTTAAAATATGTAGATTAGTGATATAATTATTTTACTGATATAAAAAAAATTATATGTGTTCAAAAAAAAGGT
Unaligned ( gi|26 ): ATTCTGACAACGTAACTATGGCCATCATGACGGTAGTATCGATATGTGCCCCGTTGAAGCCCACACAAAAA