lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 1111 7777777777777777777777777777777777 111 33333 1 1 666666666666666666666666 11 1 1 222 222222222222 33333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111 4444 11111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 222 1 1111 44444444444444 1
lowQualScore : 4 0 888888 2 8888 0000000000000000000000000000000000 55 4 444 00000 0 8 2 5 3 0 222222222222222222222222 33 2 7 7 777 555555555555 55555555 0 77777 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 4444 1111 0 2 88888 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 55 0 444 88 555 2 5555 8888 777 3 2 6666 9999 44444444444444 0 1 1 99
lowQualScore : . . ...... . .... .................................. .. . ... ..... . . . . . . ........................ .. . . . ... ............ ........ . ..... . ........................................................................................................ . .... .... . . ..... . ...................................................................................................................................... .. . ... .. ... . .... .... ... . . .... .... .............. . . . ..
lowQualScore : 0 2 222222 5 5555 0000000000000000000000000000000000 55 2 000 88888 8 0 2 0 5 0 444444444444444444444444 88 5 0 0 888 222222222222 22222222 6 66666 8 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 8888 2222 2 2 22222 8 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55 3 333 11 333 8 8888 5555 888 0 0 4444 2222 33333333333333 6 3 3 77
consensus : TTTCTTTCAATGNCCCCGTCTC---NCTGAACAACGGCTTCAATTA--------TTTAC-------TNA-------ANCAAAAC---CATA-T--TCATCCTT-TGNGTATTCAAAAGATTCTGTT----TA------TGCT-TTNA--TTTATGT--TGAAAATTGTGATCTATTTGGCAACATTC-----ACA----TATATATTAAAC-AAACAAAACGTTTTAATGACTAGTAA---ACATNTCAACTACGTATT------NN--GTGA---TATT-TANNTTTA-GTATTACAAAANNTC--TCTGCATGAGTCATGCGTA-----CCG----T--TTGAATGGANTTC--T-GGG-N-TTAACTTTACAACTCGACAATA---CATTTTTCTTCGAATGTA-----TNAATTTGTATATT--TT---TTC-TA-CATT--TTGT--A----TAGTATTTT------A-----ATAA-TAT--ATT---CTAAAT-TTAAACTTCTTTTTNTT--TTCTT----CC--TAAANCTTATT-AATGTA-TTTTGATATGAATTAN---AA----TG-TATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACATGTCCACCAANTGTTACTAAGCCATCGAGATATAAT-GCAA
Reference ( gi|1 ) : TTTCTTTCAATGTCCCCGTTTC---ACAGAACAACGACTTCATTTA--------TTTAC-------TGA-------AACAAGAC---CATG----TCATCCTT-TGTGTAGTCAAAAGATTCTCTT----TA------TGCG-TTTA--CTTATGT--TGAAAAATGTGATCTTTTTGAAAACATTC-----ACA----TGTATATTAAAG-AAGCAAAACGTTTTAACGACTAGTAATTTAAATTTAAACTGCAGATT------AA--GATA---TATT-CATTTTTA-GTCTTACAAAAGTTC--TTTGCGTGAGTCACGCGTA-----CCG----A--TTGAATGGATTTC--T-GGA-A-TTAACTTTACAACTTGATAATA---CGTTTTTCTTC------------TTAATTTATATATT--TT---TTT-TA-CATT--TTATAGAC---TAGTATCTT------A-----ATAA-TAA-AATT---CCAAAT-TTAAAATTCTTGTTATT--TTCCC----CCAATAAAACTCATT-ACTGTA-TTCTGATATGAGTTAA---AA----TG-TGTGTCTGTAATATTTTACTACATG--TATACATTT---TCATT--TTATATGTGCATCAATTGTTACTAAGCCATCGAGATATAAT-ACAA
gi|6 : TTTCTTTCAATGGCCCCTTCTCATTACAGAA-A--GGTTTCAATAA--------TCTAT-------TTA-------ACCAAAAC---CATA----TCATCCTT-TGTGTACTCAAAAGATTCTATTGGCAGA------AACGATTTAATTTTATGT--TGAAAATTATGATATATTTGACTACATTC-----ACATACGTATATATTAAAC-AAAC-AGACGTTTAAAAGACTAGTAA---ACATTT--ACTGCGTATT------AACTGA-A----ATT-AAATGTTA-TTATTACAAAAG
gi|13 : TTTCTTTCAATATCTCCGTTTA---AATGAACA-CATCTTCAAGTA--------TTTAC-------TAA-------AACAAGAC---AATA----TCATCCTA-TGAGTATTCAGAAGAATCTGTT----T-------TGC
gi|15 : TTTCTTTCCCTGCTCTCATTTC---TCTGAACAACGGCTTCGATTA--------TTTAC---------A-------AA-AATACCTACATGTT--TTATCCCT-TGAGTATTTGAAATATTCT
gi|2 : CCGTCTC---TCTGAGCAACAGCTTCAATTACTCTACGGTTTACATGTCTCTGGTATCTATACCAAAAC---CATAATTACCATTATT-TGTGTACTCAGAAGATTCTGTT----TGGCAGAGTGCT-TTGA--TTTATAT--TGAAAATTGTGATCTATTTGACAACGTTC-----GCA----TATATATTAA-------------------TGACAAGTAA-----ATGTCAACTACATATT------TC--GTGA---TTTTATATATTTA-GTATTACAAA--CTCCATCTGT-TGAGTCTTGGGTAGTGTTCTG----T--TTGAATGGAGTTT--T-GGG-GCTTAATGCTACAACTTGAAAAAA---TAGTTTTCTTCGAATGTA-----TT--TTTGTATATT--TT---TTA-TG-CATT--TTAT-------TTGTATTTTTTGTTTATTTCTATAAGTAT-TATT---CAAAAT-TTAAAATTCTT--TATT--TTTTC---------AAAAGTTATTCATTTTT-TTCTTATA------AC---AA----TG-TATCTATGTATCATTTTACTACATG--TATACATTT---TCATT--T------------GATT-TTACTAAACCATCGAGATATAAT-GCAA
gi|3 : C---CACA----TC-TCCATATGTGTATTCAAA---------C----TA------TGCT-TTAA--CTTGTGT--T-AAAATTGTGATCTATTTGGCA-CATTC-----ACA----CGTATATTAAGT-AAACAAAGCGTTTT-ATGACTAG-A----AAATATTAACTACGTATT------CC--GTGA---TATT-TATGTTTG-GTATTACAAAAATCC--T-----------------------CC----------AAATGGATTTCTTT-GG--C-TTGACTTTACTACATTATAATAAATAGTTTTTCT-----------------ATGTGCATA-T--TT---GTC-AA-TATT--TTA---------AGTATTTT-------------TTA-TAAGAAT-------AAT-TAAACTTTCTTTTTA--------------CAA-AAAA-TCTTC-A-TGT--TTTTTATATGAATGAT---AA----TA-AATGTCTGTAACATTTTACTAC--------ACATC--------------------CACCTATTGGTTCTAAGCC-TCGAAATATAATGACAttcatcgtt
gi|10 : GCGTATTTAAATGGTCTGCTT----AA------T----CTTA----TATGTGATGATAATTGTGATCTATATGG---CATTTCGCTTATA----TGTGCATTAATTTAAATAAAACGTTGTAACGACTAGTttcatcg
gi|4 : AACAGGC-----A-A----TATACATTTTAC-AAACAAAACGGTTTAATGACTAGTAA---ACATT--AACTACACATTTTGTGAAA--CTTACTTTATT-TAGTTTTAAGTTTTTTAAAATATC--TCTGCAGGAGTCATGCGTA-----CTGTTTGAGTTTGAATGGAGTTC--T-GGGGA-TTAACTTTACAACTCGACAATA---CATTCTTCTTCGAATGTAATATTTTAATTTCTATATT--AT---TTT-T----TC--TTTTCGAT---T--TA--TT------A-----------------T---CTAAACGTTAAACTTCTTTTTGTTCCTTCTT----CC--TAAACCT-ATT-CATGTATTTTTGACATGAATTAT---AA----TG-TATGTCTGTAACACGTTACTACATG--TTTATATAT---TCgttaact
gi|5 : CATGAGTCATTCGCA-----CCG----T--TTGAATGAATTTC--TTGGG-C-TTAAGTTAACAGCTTGATAATA---TATTTTTGATC------------TAAATTCGCGTATTGGTT---TTTGTAACATT--TTGTACACGTATATCATTTT------A-----ATAA-TGT-ATTT---CAGAAT-TTCACATTATT--TCTT--T---C----CTAA--AAACCTATT-AATGCC-TTC-GATACGAATCTT---AA----TG-AGTGCCTGTAATAGTTTACTACCTG--TTTATATTT---TCATT--TAATATCTGCCTCAAATATCACTTAGCCATCGAGATGTAAT-
gi|7 : ACAATTCGACAATA---CATTCTTCTTC------------TGAATGTAT-TGTT--TTAATTTC-TA-TATTATTTGT----------TGTCTTTTCG--A-----ATTA-TTA----T---CTAAAC-TTTAACTTCTT-TTATT--TTCCTTTTTCC--TAAACCT-ATT-CATGTA-TTTTGACTTGATTTAT---AA----TG-TTTGTCTGTAACACTTTACTACATG--TTTATAT-------ATT--TAGTATGTCTTTCAAATGTTACTAAGCAATCGAGATATAAttatc
gi|8 : ---TAATATCTT------A-----GTAA-AAT-CATTGTCTTAACT-TTAAACTTCATTTTTTT--TTCTT----CC--TAAACCT-ATT-CATGTA-TTTCGACATGAATTAT---AA----TG-TATGTCTGTAACTCTTTACTACATGTTTATATATTT---cgtaaacca
gi|16 : ATT-AATGTA-CTTTGATATGA-TGAATTTAA----TG-TGTATCTGTAATATTTTACTATATG--CAAACATTC---CCATT--TAATACGTGa
gi|12 : TGTG-TTTT-ATATGAATTAC---AA----TT-CATGTCT--AACACATTACTACATG--TATACGTTG---TCATT--TAACA-------CAG-TGGTACAAAGTCATCGAAATATAAT-GCAA
gi|11 : ttctgtaGTA-TTC-GATTTG--TTAA---AACATTTG-CATGACAGTAACATTT-ACAACATG--TATACATTT---CCATT--TAACATGTCAACCTACTGGTACTAAGTCATCAAATTATAAT-GCAtt
gi|14 : TAA---AA----TAATTTCTATGTAACAATTTACCACAT------ACATTTCTTTTATTAGTTACATGTCCACCAAATGTTTCTAAGCCATCCAGATAGAAC-GCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CTACATATTTTGTGAAACTATCTTTATTTAGTTTTGAGTTTTACGAAATATCTCAGTAGGACAGACAACTCTTCTTCTGAATGTAATGTTTTAATTTCTATATAATTTTTCTTTTCAAATCATTGTC
Alignments
lowQualScore : 22222222 4444444444444444 33333333 4444444444444 1111 1111 111 2222222222 333333333 22222 222222 11 44444444444444444 111111 777777777777777777777777777777777777777777777777 111 11 11111 11 111111111
lowQualScore : 1 1 0 99999999 8888888888888888 8 2 6 77777777 6 1 1 1 1 0000000000000 44 8 7 4444 4444 666 3 33 1111111111 22 222222222 8 22 8 1 22 3 99 1 00000 1 1 333333 1 8 8 77 0 2 1 88888888888888888 1 666666 3 6 000000000000000000000000000000000000000000000000 222 5 5 1 55 3 77 33333 6 11 7777 1 7777 2 55 4 55 2 666 66 1 111111111 3 2
lowQualScore : . . . ........ ................ . . . ........ . . . . . ............. .. . . .... .... ... . .. .......... .. ......... . .. . . .. . .. . ..... . . ...... . . . .. . . . ................. . ...... . . ................................................ ... . . . .. . .. ..... . .. .... . .... . .. . .. . ... .. . ......... . .
lowQualScore : 0 0 8 00000000 8888888888888888 8 2 7 55555555 7 0 7 4 0 0000000000000 66 0 3 2222 2222 333 2 55 8888888888 00 000000000 0 00 0 0 00 2 44 0 00000 4 0 000000 0 0 0 00 7 2 0 55555555555555555 7 222222 7 7 999999999999999999999999999999999999999999999999 999 7 7 0 77 6 99 33333 0 22 8888 0 7777 9 00 9 00 5 444 11 1 000000000 5 8
consensus : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAA-TTTATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAA-ACAAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCCTCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGATTTC-T-GGGN-TTAACTTTACAACTCGATAATACATTTTTCTTC-GAATGTA-----TTAATTTGTATATT---T--TTTNTA-CATTTTATA---TA-GTA-T------TTT--A-----ATAA-TA-T-A-TT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CTTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCT--GTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
Reference ( family-4542 ) : TTTCTTTCAATGNCCCCGTCTCNCTGAACAACGGCTTCAATTA--------TTTAC--------------TNAANCAAAACC-ATA---TT--CATCCTT-TGNGTATTCAAAAGATTCTGTTT------A------TGCTTTNA-TTTATGTTGAAAATTGTGATCTATTTGGCAACATTCACA----TATAT----ATTAA-ACAAACAAAACGTTTTAATGACTAGTAA---ACATNTCAACTACGTATTNNGTGA---------TATT-TANNTTTA-GTATTACAAAANNTCTCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGANTTC-T-GGGN-TTAACTTTACAACTCGACAATACATTTTTCTTC-GAATGTA-----TNAATTTGTATATT---T--TTTCTA-CATTTTGTA---TA-GTA-T------TTT--A-----ATAA-TA-T-A-TT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAN-CTTATTAATGTA-TTTTGATATGA---ATTANAA----TGTATGTCT--GTAACACTTTACTACATG--TATACATTT---TCATT--TAACATGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
gi|1 : TTTCTTTCAATGTCCCCGTTTCACAGAACAACGACTTCATTTA--------TTTAC--------------TGAAACAAGACC-ATG---T---CATCCTT-TGTGTAGTCAAAAGATTCTCTTT------A------TGCGTTTA-CTTATGTTGAAAAATGTGATCTTTTTGAAAACATTCACA----TGTAT----ATTAA-AGAAGCAAAACGTTTTAACGACTAGTAATTTAAATTTAAACTGCAGATTAAGATA---------TATT-CATTTTTA-GTCTTACAAAAGTTCTTTGCGTGAGTCACGCGTA-----CCGATTGA------ATGGATTTC-T-GGAA-TTAACTTTACAACTTGATAATACGTTTTTCTTC-------------TTAATTTATATATT---T--TTTTTA-CATTTTATAGACTA-GTA-T------CTT--A-----ATAA-TA-A-AATT---CCAAAT-TTAAAA-TTCTTGT-TATT--TTCCCCCAATAAAA-CTCATTACTGTA-TTCTGATATGA---GTTAAAA----TGTGTGTCT--GTAATATTTTACTACATG--TATACATTT---TCATT--TTATATGTGCATCAATTGTTACTAAGCCATCGAGATATAATACAA
gi|10 : GCGTATTTAAATGGT-CTGCTT------A------ATCTT--A-TATGTGATGATAATTGTGATCTATATGGCA--TTTCGCT----TATATGTGCATTAATTTAAATAAAACGTTGTAACGACTAGT
gi|11 : GTA-TTC-GATTTG-----TTAAAACATTTGCATGACA--GTAACA-TTTACAACATG--TATACATTT---CCATT--TAACATGTCAACCTACTGGTACTAAGTCATCAAATTATAATGCAgttaact
gi|12 : ATGTG-TTTT-ATATGA---ATTACAA----TTCATGTCT----AACACATTACTACATG--TATACGTTG---TCATT--TAACAC--------AGTGGTACAAAGTCATCGAAATATAATGCAA
gi|13 : ttctgtTTTCTTTCAATATCTCCGTTTAAATGAACA-CATCTTCAAGTA--------TTTAC--------------TAAAACAAGACA-ATA---T---CATCCTA-TGAGTATTCAGAAGAATCTGTTT-------------TGCtt
gi|14 : TAAAA----TA-ATTTCTATGTAACAATTTACCACAT------ACATTTCTTTTATTAGTTACATGTCCACCAAATGTTTCTAAGCCATCCAGATAGAACGCA
gi|15 : TTTCTTTCCCTGCTCTCATTTCTCTGAACAACGGCTTCGATTA--------TTTAC---------------AAA--AATACCTACATGTTT--TATCCCT-TGAGTATTTGAAATATTCT
gi|16 : ATTAATGTA-CTTTGATATGATGAATT-TAA----TGTGTATCT--GTAATATTTTACTATATG--CAAACATTC---CCATT--TAATACGT
gi|2 : CCGTCTCTCTGAGCAACAGCTTCAATTACTCTACGGTTTACATGTCTCTGGTATCTATACCAAAACC-ATAA--TTACCATTATT-TGTGTACTCAGAAGATTCTGTTT------GGCAGAGTGCTTTGA-TTTATATTGAAAATTGTGATCTATTTGACAACGTTCGCA----TATAT----ATTAA-------------------TGACAAGTAA---A--TGTCAACTACATATTTCGTGA---------TTTTATATATTTA-GTATTACAAACTCCATCTGT-TGAGTCTTGGGTAGTGTTCTGTTTGA------ATGGAGTTT-T-GGGGCTTAATGCTACAACTTGAAAAAATAGTTTTCTTC-GAATGTA-----TT--TTTGTATATT---T--TTTATG-CATTTTAT----TT-GTA-TTTTTTGTTT--ATTTCTATAAGTATT-A-TT---CAAAAT-TTAAAA-TTCTTTA-TTTT--TTC-------AAAA-GTTATTCATTT--TTTTCTTATA-------ACAA----TGTATCTAT--GTATCATTTTACTACATG--TATACATTT---TCATT--TGA-------------TTTTACTAAACCATCGAGATATAATGCAAg
gi|3 : CC-ACA---TC----TCCATATGTGTATTCAAA---------CT------A------TGCTTTAA-CTTGTGTT-AAAATTGTGATCTATTTGGCA-CATTCACA----CGTAT----ATTAA-GTAAACAAAGCGTTTTA-TGACTAG-AA---A-ATATTAACTACGTATTCCGTGA---------TATT-TATGTTTG-GTATTACAAAAATCCTC--CA-------------------------A------ATGGATTTCTT-TGGC-TTGACTTTACTACATTATAATAAATAGTTTTTC------TA-----TG----TGCATA-T---T--TGTCAA-TATTTTA------A-GTATT------TTT--T-----ATAA-GA---A-------TAA---TTAAACTTTCTTTT-TA----------C--AAAAA-ATC-TTCATGT--TTTTTATATGA---ATGATAA----TAAATGTCT--GTAACATTTTACTAC--------ACA--------------------TCCACCTATTGGTTCTAAGCC-TCGAAATATAATGttcatcgtt
gi|4 : AACAGGCA-A----TATAC----ATTTT-ACAAACAAAACGGTTTAATGACTAGTAA---ACATT--AACTACACATTTTGTGAAACTTACTTTATT-TAGTTTTAAGTTTTTTAAAATATCTCTGCAGGAGTCATGCGTA-----CTGTTTGAGTTTGAATGGAGTTC-T-GGGGATTAACTTTACAACTCGACAATACATTCTTCTTC-GAATGTAATATTTTAATTTCTATATT---A--TTTTTT-CTTTTCG----------A-T------TT------------A-T--T-A-T----CTAAACGTTAAAC-TTCTTTT-TGTTCCTTCTTCC--TAAAC-C-TATTCATGTATTTTTGACATGA---ATTATAA----TGTATGTCT--GTAACACGTTACTACATG--TTTATATAT---TCacattcatcg
gi|5 : CATGAGTCATTCGCA-----CCGTTTGA------ATGAATTTC-TTGGGC-TTAAGTTAACAGCTTGATAATATATTTTT-----GA---TC-----TAAATTCGCGTATTGGTT--TTTGTAACATTTTGTA---CACGTA-TATCAT-TTT--A-----ATAA-TG-T-A-TT---TCAGA------AT-TTCACAT-TATT--TCTTTCC--TAAAAACCTATTAATGC--CTTCGATACGA---ATCTTAA----TGAGTGCCT--GTAATAGTTTACTACCTG--TTTATATTT---TCATT--TAATATCTGCCTCAAATATCACTTAGCCATCGAGATGTAAT
gi|6 : TTTCTTTCAATGGCCCCTTCTCATTACAGAAAGGTTTCAATAA--------TCTAT--------------TTAACCAAAACC-ATA----T--CATCCTT-TGTGTACTCAAAAGATTCTATTGGCAGAAA------CGATTTAATTTTATGTTGAAAATTATGATATATTTGACTACATTCACATACGTATAT----ATTAA-ACAAAC-AGACGTTTAAAAGACTAGTAA---ACATTT--ACTGCGTATTAACTGA---------AATT-AAATGTTA-TTATTACAAAAttatc
gi|7 : ACAATTCGACAATACATTCTTCTTCTGAATGTA-----T-----TGT---TT---TAATTTCTA-TATTATTTG---TT-GTC-T------TTTCGA-----ATTA-T--T-A-T----CTAAAC-TTTAAC-TTCTTTTATTTTCCTTTTTCC--TAAAC-CT-ATTCATGTA-TTTTGACTTGA---TTTATAA----TGTTTGTCT--GTAACACTTTACTACATG--TTTATAT-------ATT--TAGTATGTCTTTCAAATGTTACTAAGCAATCGAGATATAACGTAAg
gi|8 : ---TA-ATA-T------CTT--A-----GTAA-AA-TCA-TTGTCTTAACT-TTAAAC-TTCATTT-TTTT--TTCTTCC--TAAAC-CT-ATTCATGTA-TTTCGACATGA---ATTATAA----TGTATGTCT--GTAACTCTTTACTACATGTTTATATATTT---acca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTACATATTTTGTGAAACTATCTTTATTTAGTTTTGAGTTTTACGAAATATCTCAGTAGGACAGACAACTCTTCTTCTGAATGTAATGTTTTAATTTCTATATAATTTTTCTTTTCAAATCATTGTC
Alignments
lowQualScore : 22222222 444444444444444 33333333 4444444444444 1111 1111 111 1111111111 333333333 1 22222 222222 111 111 3333333333333333333 111 666666666666666666666666666666666666666666666666 111 11 11 11 1111111
lowQualScore : 0 1 0 99999999 777777777777777 8 1 6 77777777 6 0 1 1 1 0000000000000 44 8 6 4444 4444 222 3 2 8888888888 44 222222222 8 22 8 1 0 1 0 3 99 1 00000 1 1 333333 8 111 99 0 0 111 8888888888888888888 5 111 3 1 6 666666666666666666666666666666666666666666666666 222 5 5 1 55 3 77 00 11 7777 8888 4 55 2 666 66 1 2 0000000 3 2
lowQualScore : . . . ........ ............... . . . ........ . . . . . ............. .. . . .... .... ... . . .......... .. ......... . .. . . . . . . .. . ..... . . ...... . ... .. . . ... ................... . ... . . . ................................................ ... . . . .. . .. .. .. .... .... . .. . ... .. . . ....... . .
lowQualScore : 8 4 8 00000000 888888888888888 8 4 7 55555555 7 6 7 4 0 0000000000000 88 0 0 2222 2222 222 2 2 5555555555 22 000000000 0 00 0 0 8 0 0 2 44 0 00000 4 0 000000 0 888 00 7 3 777 5555555555555555555 2 777 2 0 7 000000000000000000000000000000000000000000000000 999 7 7 0 77 6 99 77 22 8888 5555 9 00 5 444 11 1 7 3333333 5 8
consensus : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGC-TTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAATGTA-----TTAATTTGTATATT---TTTTNTA-CATTTTNTA---TA-GTA-T------TTT--A-----ATAA-T-A-T-ATT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
Reference ( family-4542 ) : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGN-TTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAATGTA-----TTAATTTGTATATT---TTTTNTA-CATTTTATA---TA-GTA-T------TTT--A-----ATAA-T-A-T-ATT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CTTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
gi|1 : TTTCTTTCAATGTCCCCGTTTCACAGAACAACGACTTCATTTA--------TTTAC--------------TGAAACAAGACC-ATG---T---CATCCTT-TGTGTAGTCAAAAGATTCTCTTT------A------TGCGTTTACTT-ATGTTGAAAAATGTGATCTTTTTGAAAACATTCACA----TGTAT----ATTAAAG-AAGCAAAACGTTTTAACGACTAGTAATTTAAATTTAAACTGCAGATTAAGATA---------TATT-CATTTTTA-GTCTTACAAAAGTTC-TTTGCGTGAGTCACGCGTA-----CCGATTGA------ATGGA-TTTC-T-GGAA-TTAACTTTACAACTTGATAATACG---TTTTTCTTC-------------TTAATTTATATATT---TTTTTTA-CATTTTATAGACTA-GTA-T------CTT--A-----ATAA-TAA-A-ATT---CCAAAT-TTAAAA-TTCTTGT-TATT--TTCCCCCAATAAAA-CTCATTACTGTA-TTCTGATATGA---GTTAAAA----TGTGTGTCTGTAATATTTTACTACATG--TATACATTT---TCATT--TTATATGTGCATCAATTGTTACTAAGCCATCGAGATATAATACAA
gi|10 : GCGTATTTAAATGGT-CTGCTT------A------ATCTT--ATAT-GTGATGATAATTGTGATCTATATGGCAT--TTCGCT----TATATGTGCATTAATTTAAATAAAACGTTGTAACGACTAGTG--------TT-AACT
gi|11 : GTA-TTC-GATTTG-----TTAAAACATTTGCATGACAGTAACA-TTTACAACATG--TATACATTT---CCATT--TAACATGTCAACCTACTGGTACTAAGTCATCAAATTATAATGCA
gi|12 : ATGTG-TTTT-ATATGA---ATTACAA----TTCATGTCT--AACACATTACTACATG--TATACGTTG---TCATT--TAACAC--------AGTGGTACAAAGTCATCGAAATATAATGCAA
gi|13 : ttctgtTTTCTTTCAATATCTCCGTTTAAATGAACA-CATCTTCAAGTA--------TTTAC--------------TAAAACAAGACA-ATA----T--CATCCTA-TGAGTATTCAGAAGAATCTGTTT-------------TGCtt
gi|14 : TGTAACAATTTACCACAT------ACATTTCTTTTATTAGTTACATGTCCACCAAATGTTTCTAAGCCATCCAGATAGAACGCA
gi|15 : taaaataatttctaTTTCTTTCCCTGCTCTCATTTCTCTGAACAACGGCTTCGATTA--------TTTAC---------------AAA--AATACCTACATGTTT--TATCCCT-TGAGTATTTGAAATATTCT
gi|16 : ATTAATGTA-CTTTGATATGATGAATT-TAA----TGTGTATCTGTAATATTTTACTATATG--CAAACATTC---CCATT--TAATACGT
gi|2 : CCGTCTCTCTGAGCAACAGCTTCAATTACTCTACGGTTTACATGTCTCTGGTATCTATACCAAAACC-ATAA--TTACCATTATT-TGTGTACTCAGAAGATTCTGTTT------GGCAGAGTGCTTTGATTT-ATATTGAAAATTGTGATCTATTTGACAACGTTCGCA----TATAT----A-------------------TTAATGACAAGTAA---ATG-TC-AACTACATATTTCGTGA---------TTTTATATATTTA-GTATTAC-AAACTCCATCTGT-TGAGTCTTGGGTAGTGTTCTGTTTGA------ATGGAGTTTT-G-GGGC-TTAATGCTACAACTTGAAAAAATA---GTTTTCTTC-GAATGTA-----TT--TTTGTATATT---TTTTATG-CATTTTAT----TT-GTA-TTTTTTGTTT--ATTTCTATAAGT-ATT-ATT---CAAAAT-TTAAAA-TTCTTTA-TTTT--TTC-------AAAA-GTTATTCATTT--TTTTCTTATA-------ACAA----TGTATCTATGTATCATTTTACTACATG--TATACATTT---TCATT--TGA-------------TTTTACTAAACCATCGAGATATAATGCAAg
gi|3 : CC-ACA---TC----TCCATATGTGTATTCAAA---------CT------A------TGCTTTAACTT-GTGTT-AAAATTGTGATCTATTTGGCA-CATTCACA----CGTAT----ATTAAGT-AAACAAAGCGTTTTA-TGACTAGAAA---ATATT--AACTACGTATTCCGTGA---------TATT-TATGTTTG-GTATTACAAAAATCC-TC--CA-------------------------A------ATGGA-TTTCTT-TGGC-TTGACTTTACTACATTATAATAAATAGTTTTTCT-----ATG-------------TGCATATT---TGTCA-A-TATTTTA------A-GTATT------TTT--T-----ATAA-G-A---A------TAA---TTAAACTTTCTTTT-TA----------C--AAAAA-ATC-TTCATGT--TTTTTATATGA---ATGATAA----TAAATGTCTGTAACATTTTACT----------------------------ACACATCCACCTATTGGTTCTAAGCC-TCGAAATATAATGttcatcgtt
gi|4 : A----TATAC----ATTTTAC-AAACAAAACGGTTTAATGACTAGTAA---ACATT--AACTACACATTTTGTGAAACTTACTTTATT-TAGTTTTAAGTTTTTTAAAATATC-TCTGCAGGAGTCATGCGTA-----CTGTTTGAGTTTGAATGGA-GTTC-T-GGGGATTAACTTTACAACTCGACAATACA---TTCTTCTTC-GAATGTAATATTTTAATTTCTATATT---ATTTTTT-C-TTTTCGA-----------------TTT--A-----TTA----------T---CTAAACGTTAAAC-TTCTTTT-TGTTCCTTCTTCC--T-AAA-CCTATTCATGTATTTTTGACATGA---ATTATAA----TGTATGTCTGTAACACGTTACTACATG--TTTATATAT---TCacattcatcg
gi|5 : aacaggcaCATGAGTCATTCGCA-----CCGTTTGA------ATGAA-TTTC-TTGGGC-TTAAGTTAACAGCTTGATAATATA---TTTTT------GATCTA-------AATTCGCGTATTGGTTTTTGTAACATTTTGTA---CACGTA-TATCAT-TTT--A-----ATAA-T-G-T-ATT---TCAGA------AT-TTCACAT-TATT--TCTTTCC--TAAAAACCTATTAATGC--CTTCGATACGA---ATCTTAA----TGAGTGCCTGTAATAGTTTACTACCTG--TTTATATTT---TCATT--TAATATCTGCCTCAAATATCACTTAGCCATCGAGATGTAAT
gi|6 : TTTCTTTCAATGGCCCCTTCTCATTACAGAAAGGTTTCAATAA--------TCTAT--------------TTAACCAAAACC-ATA---T---CATCCTT-TGTGTACTCAAAAGATTCTATTGGCAGAAA------CGATTTAATTTTATGTTGAAAATTATGATATATTTGACTACATTCACATACGTATAT----ATTAAAC-AAAC-AGACGTTTAAAAGACTAGTAA---ACATTT--ACTGCGTATTAACTGA---------AATT-AAATGTTA-TTATTACAAAAttatc
gi|7 : ACAATTCGACAATACA---TTCTTCTTCTGAATGTA-----TTG-TTT-TA-ATT---T---CTA-TATTATTTG---TT-GTC-T------TTTCGA-----ATTA-T---T-AT----CTAAAC-TTTAAC-TTCTTTTATTTTCCTTTTTCC--TAAA--CCTATTCATGTA-TTTTGACTTGA---TTTATAA----TGTTTGTCTGTAACACTTTACTACATG--TTTATAT-------ATT--TAGTATGTCTTTCAAATGTTACTAAGCAATCGAGATATAACGTAAg
gi|8 : ---TA-ATA-T------CTT--A-----GTAA-A-A-TCATTGTCTTAACT-TTAAAC-TTCATTT-TTTT--TTCTTCC--TAAA--CCTATTCATGTA-TTTCGACATGA---ATTATAA----TGTATGTCTGTAACTCTTTACTACATGTTTATATATTT---acca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTACATATTTTGTGAAACTATCTTTATTTAGTTTTGAGTTTTACGAAATATCTCAGTAGGACAGACAACTCTTCTTCTGAATGTAATGTTTTAATTTCTATATAATTTTTCTTTTCAAATCATTGTC
Alignments
lowQualScore : 22222222 444444444444444 33333333 4444444444444 1111 1111 111 1111111111 333333333 1 22222 222222 111 111 3333333333333333333 111 666666666666666666666666666666666666666666666666 111 11 11 11 1111111
lowQualScore : 0 1 0 99999999 777777777777777 8 1 6 77777777 6 0 1 1 1 0000000000000 44 8 6 4444 4444 222 3 2 8888888888 44 222222222 8 22 8 1 0 1 0 3 99 1 00000 1 1 333333 8 111 8 0 0 111 8888888888888888888 5 111 3 1 6 555555555555555555555555555555555555555555555555 222 5 5 1 55 3 77 00 0 11 7777 8888 4 55 2 666 66 1 2 0000000 3 2
lowQualScore : . . . ........ ............... . . . ........ . . . . . ............. .. . . .... .... ... . . .......... .. ......... . .. . . . . . . .. . ..... . . ...... . ... . . . ... ................... . ... . . . ................................................ ... . . . .. . .. .. . .. .... .... . .. . ... .. . . ....... . .
lowQualScore : 8 4 8 00000000 888888888888888 8 4 7 55555555 7 6 7 4 0 0000000000000 88 0 0 2222 2222 222 2 2 5555555555 22 000000000 0 00 0 0 8 0 0 2 44 0 00000 4 0 000000 0 888 0 7 3 777 5555555555555555555 2 777 2 0 7 111111111111111111111111111111111111111111111111 999 7 7 0 77 6 99 77 1 22 8888 5555 9 00 5 444 11 1 7 3333333 5 8
consensus : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGC-TTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAATGTA-----TTAATTTGTATATT---TTTTNTA-CATTTTNTA---TA-GTA-T------TTT--A-----ATAA-T-A-T-ATT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
Reference ( family-4542 ) : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGC-TTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAATGTA-----TTAATTTGTATATT---TTTTNTA-CATTTTNTA---TA-GTA-T------TTT--A-----ATAA-T-A-T-ATT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
gi|1 : TTTCTTTCAATGTCCCCGTTTCACAGAACAACGACTTCATTTA--------TTTAC--------------TGAAACAAGACC-ATG---T---CATCCTT-TGTGTAGTCAAAAGATTCTCTTT------A------TGCGTTTACTT-ATGTTGAAAAATGTGATCTTTTTGAAAACATTCACA----TGTAT----ATTAAAG-AAGCAAAACGTTTTAACGACTAGTAATTTAAATTTAAACTGCAGATTAAGATA---------TATT-CATTTTTA-GTCTTACAAAAGTTC-TTTGCGTGAGTCACGCGTA-----CCGATTGA------ATGGA-TTTC-T-GGAA-TTAACTTTACAACTTGATAATACG---TTTTTCTTC-------------TTAATTTATATATT---TTTTTTA-CATTTTATAGACTA-GTA-T------CTT--A-----ATAA-TAA-A-ATT---CCAAAT-TTAAAA-TTCTTGT-TATT--TTCCCCCAATAAAA-CTCATTACTGTA-TTCTGATATGA---GTTAAAA----TGTGTGTCTGTAATATTTTACTACATG--TATACATTT---TCATT--TTATATGTGCATCAATTGTTACTAAGCCATCGAGATATAATACAA
gi|10 : GCGTATTTAAATGGT-CTGCTT------A------ATCTT--ATAT-GTGATGATAATTGTGATCTATATGGCAT--TTCGCT----TATATGTGCATTAATTTAAATAAAACGTTGTAACGACTAGTG--------TT-AACT
gi|11 : GTA-TTC-GATTTG-----TTAAAACATTTGCATGACAGTAACA-TTTACAACATG--TATACATTT---CCATT--TAACATGTCAACCTACTGGTACTAAGTCATCAAATTATAATGCA
gi|12 : ATGTG-TTTT-ATATGA---ATTACAA----TTCATGTCT--AACACATTACTACATG--TATACGTTG---TCATT--TAACAC--------AGTGGTACAAAGTCATCGAAATATAATGCAA
gi|13 : ttctgtTTTCTTTCAATATCTCCGTTTAAATGAACA-CATCTTCAAGTA--------TTTAC--------------TAAAACAAGACA-ATA----T--CATCCTA-TGAGTATTCAGAAGAATCTGTTT-------------TGCtt
gi|14 : TGTAACAATTTACCACAT------ACATTTCTTTTATTAGTTACATGTCCACCAAATGTTTCTAAGCCATCCAGATAGAACGCA
gi|15 : taaaataatttctaTTTCTTTCCCTGCTCTCATTTCTCTGAACAACGGCTTCGATTA--------TTTAC---------------AAA--AATACCTACATGTTT--TATCCCT-TGAGTATTTGAAATATTCT
gi|16 : ATTAATGTA-CTTTGATATGATGAATT-TAA----TGTGTATCTGTAATATTTTACTATATG--CAAACATTC---CCATT--TAATACGT
gi|2 : CCGTCTCTCTGAGCAACAGCTTCAATTACTCTACGGTTTACATGTCTCTGGTATCTATACCAAAACC-ATAA--TTACCATTATT-TGTGTACTCAGAAGATTCTGTTT------GGCAGAGTGCTTTGATTT-ATATTGAAAATTGTGATCTATTTGACAACGTTCGCA----TATAT----A-------------------TTAATGACAAGTAA---ATG-TC-AACTACATATTTCGTGA---------TTTTATATATTTA-GTATTAC-AAACTCCATCTGT-TGAGTCTTGGGTAGTGTTCTGTTTGA------ATGGAGTTTT-G-GGGC-TTAATGCTACAACTTGAAAAAATA---GTTTTCTTC-GAATGTA-----TT--TTTGTATATT---TTTTATG-CATTTTAT----TT-GTA-TTTTTTGTTT--ATTTCTATAAGT-ATT-ATT---CAAAAT-TTAAAA-TTCTTTA-TTTT--TTC-------AAAA-GTTATTCATTT--TTTTCTTATA-------ACAA----TGTATCTATGTATCATTTTACTACATG--TATACATTT---TCATT--TGA-------------TTTTACTAAACCATCGAGATATAATGCAAg
gi|3 : CC-ACA---TC----TCCATATGTGTATTCAAA---------CT------A------TGCTTTAACTT-GTGTT-AAAATTGTGATCTATTTGGCA-CATTCACA----CGTAT----ATTAAGT-AAACAAAGCGTTTTA-TGACTAGAAA---ATATT--AACTACGTATTCCGTGA---------TATT-TATGTTTG-GTATTACAAAAATCC-TC--CA-------------------------A------ATGGA-TTTCTT-TGGC-TTGACTTTACTACATTATAATAAATAGTTTTTCT-----ATG-------------TGCATATT---TGTCA-A-TATTTTA------A-GTATT------TTT--T-----ATAA-G-A---A------TAA---TTAAACTTTCTTTT-TA---------CA--AAAAA-TC--TTCATGT--TTTTTATATGA---ATGATAA----TAAATGTCTGTAACATTTTACT----------------------------ACACATCCACCTATTGGTTCTAAGCC-TCGAAATATAATGttcatcgtt
gi|4 : A----TATAC----ATTTTAC-AAACAAAACGGTTTAATGACTAGTAA---ACATT--AACTACACATTTTGTGAAACTTACTTTATT-TAGTTTTAAGTTTTTTAAAATATC-TCTGCAGGAGTCATGCGTA-----CTGTTTGAGTTTGAATGGA-GTTC-T-GGGGATTAACTTTACAACTCGACAATACA---TTCTTCTTC-GAATGTAATATTTTAATTTCTATATT---ATTTTTT-C-TTTTCGA---T--------------TT--A-----TTA----------T---CTAAACGTTAAAC-TTCTTTT-TGTTCCTTCTTCC--T-AAA-CCTATTCATGTATTTTTGACATGA---ATTATAA----TGTATGTCTGTAACACGTTACTACATG--TTTATATAT---TCacattcatcg
gi|5 : aacaggcaCATGAGTCATTCGCA-----CCGTTTGA------ATGAA-TTTC-TTGGGC-TTAAGTTAACAGCTTGATAATATA---TTTTT------GATCTA-------AATTCGCGTATTGGTTTTTGTAACATTTTGTA---CACGTA-TATCAT-TTT--A-----ATAA-T-G-T-ATT---TCAGA------AT-TTCACAT-TATT--TCTTTCC--TAAAAACCTATTAATGC--CTTCGATACGA---ATCTTAA----TGAGTGCCTGTAATAGTTTACTACCTG--TTTATATTT---TCATT--TAATATCTGCCTCAAATATCACTTAGCCATCGAGATGTAAT
gi|6 : TTTCTTTCAATGGCCCCTTCTCATTACAGAAAGGTTTCAATAA--------TCTAT--------------TTAACCAAAACC-ATA---T---CATCCTT-TGTGTACTCAAAAGATTCTATTGGCAGAAA------CGATTTAATTTTATGTTGAAAATTATGATATATTTGACTACATTCACATACGTATAT----ATTAAAC-AAAC-AGACGTTTAAAAGACTAGTAA---ACATTT--ACTGCGTATTAACTGA---------AATT-AAATGTTA-TTATTACAAAAttatc
gi|7 : ACAATTCGACAATACA---TTCTTCTTCTGAATGTA-----TTG-TTT-TA-ATT---T---CTA-TATTATTTG---TT-GTC-T------TTTCGA-----ATTA-T---T-AT----CTAAAC-TTTAAC-TTCTTTTATTTTCCTTTTTCC--TAAA--CCTATTCATGTA-TTTTGACTTGA---TTTATAA----TGTTTGTCTGTAACACTTTACTACATG--TTTATAT-------ATT--TAGTATGTCTTTCAAATGTTACTAAGCAATCGAGATATAACGTAAg
gi|8 : ---TA-ATA-T------CTT--A-----GTAA-A-A-TCATTGTCTTAACT-TTAAAC-TTCATTT-TTTT--TTCTTCC--TAAA--CCTATTCATGTA-TTTCGACATGA---ATTATAA----TGTATGTCTGTAACTCTTTACTACATGTTTATATATTT---acca
blockSeqs : A CTCTACGG ATGTCTCTGGTATCT A G T TGTTTT A T T G GGCAGAG TG T T TACG GTGC TTT A C ACATTT TC AACTTACTT A TA A A C A T AG T GTGTT T T GTTTGA G TT A TAG TCGAATGTAATATTTTAA G GGT T A A ATTTGTATTTTTTGTTTATTTCTATAAGTATTATT ACG T A T CC T . AA AT ATGA CATT C TT A CTT AG A C TGTCAAC T C
blockSeqs : T . T C T . ATTACC . A T G GCAGAAA TA . A . . GT A T ATGTC CC . . TG . A A . T AT A . T T . . TT . . TCTGAATGTATTG G . G A . GTACACGTATATCATTTTAATAATGTATT AT . . A CC T . A A A . A . A . . A C TGTCCAC A G
blockSeqs : T . T C A . TC . A T G A TA . A . . AC A T ATATT TT . . GT . T T . . T A . C T . . G . . TCGAATGTATT C . T T . TTGTTGTCTTTTCGAATTATTAT AC . . G . T . A G A . T . A . . T C CATCCAC T A
blockSeqs : A . . . A . TC . A T A A . . . . . AC . T ACATT AA . . AT . A A . . . . . . T . . GATCTAAA G . T G . AAGTATTTTTTATAAGAA CT . . A . T . A A A . T . A . . A T TCTGCCT A T
blockSeqs : . TC . A . . . . . . . A TT . ATG . . . C . CGATTTATTAT A . . T . . . . A A . T . T . . G C TGTCTTT A A
blockSeqs : . . . . . T . . . . A A . C . T . . A T C . A
blockSeqs : . A . G . T . . A T . . .
blockSeqs : . . . C . A . . . .
blockSeqs : . . . C . . .
blockSeqs : . . . .
blockSeqCons : ATATT***** TCGAATGTATTG******* NTGTATATTTTTTCAATNATTATT************************ **
originalCons : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACATTT-AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGC-TTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAATGTA-----TTAATTTGTATATT---TTTTNTA-CATTTTNTA---TA-GTA-T------TTT--A-----ATAA-T-A-T-ATT---CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
finalCons : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAAATATT-----AACTACGTATTNCGTGA---------TATT-TATTTTTA-GTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CCGTTTGA------ATGGA-TTTC-T-GGGC-TTAACTTTACAACTCGATAATACA---TTTTTCTTCGAATGTATTG-------TTTGTATATT---TTTTNTA-CATTTTNTGTATATTTTTTCAATNATTATT------------------------CTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTACATATTTTGTGAAACTATCTTTATTTAGTTTTGAGTTTTACGAAATATCTCAGTAGGACAGACAACTCTTCTTCTGAATGTAATGTTTTAATTTCTATATAATTTTTCTTTTCAAATCATTGTC
Alignments
lowQualScore : 22222222 444444444444444 33333333 4444444444444 1111 1111 111 111 333333333 1 3333333333333 111 111 3333333333333333333 22222222 3333333333333 11 111 11 11 11 1111111
lowQualScore : 0 1 0 99999999 777777777777777 8 1 6 77777777 6 0 1 1 1 0000000000000 44 8 6 4444 4444 222 3 2 3 111 0 99 44 222222222 8 22 8 1 0 1 0 3 99 1 9999999999999 1 8 999 0 0 111 8888888888888888888 9 7 3 1 6 33333333 8888888888888 5 1 33 55 222 5 5 1 55 3 77 00 0 11 7777 8888 4 55 2 666 66 1 2 0000000 3 2
lowQualScore : . . . ........ ............... . . . ........ . . . . . ............. .. . . .... .... ... . . . ... . .. .. ......... . .. . . . . . . .. . ............. . . ... . . ... ................... . . . . . ........ ............. . . .. .. ... . . . .. . .. .. . .. .... .... . .. . ... .. . . ....... . .
lowQualScore : 8 4 8 00000000 888888888888888 8 4 7 55555555 7 6 7 4 0 0000000000000 88 0 0 2222 2222 222 2 2 5 777 3 22 22 000000000 0 00 0 0 8 0 0 2 44 0 4444444444444 0 0 888 7 3 777 5555555555555555555 3 3 2 0 7 88888888 0000000000000 7 0 66 00 999 7 7 0 77 6 99 77 1 22 8888 5555 9 00 5 444 11 1 7 3333333 5 8
consensus : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ACGTT--AACTACGTATTNCGTGA---------TATT-TATTTTT-AGTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CC------GTTTGAATGGA-TTTC-T-GGGCTTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAAT----GTATT-G---TTTGTATATTTTTTNTA-CATTTTATGTA-TATCTTTT-----------T-AA-TNAT--TATTCTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
Reference ( family-4542 ) : TTTCTTTCAATGTCCCCGTTTCACTGAACAACGGCTTCAATTA--------TTTAC--------------TAAANCAAGACC-ATA---TT--CATCCTT-TGTGTATTCAAAAGATTCTGTTT------A------TGCTTTAATTT-ATGTTGAAAATTGTGATCTATTTGACAACATTCGCA----TATAT----ATTAAAC-AAACAAAACGTTTTAACGACTAGTAA---ATATT--AACTACGTATTNCGTGA---------TATT-TATTTTT-AGTATTACAAAANTCC-TCTGCATGAGTCATGCGTA-----CC------GTTTGAATGGA-TTTC-T-GGGCTTAACTTTACAACTCGATAATACA---TTTTTCTTC-GAAT----GTATT-G---TTTGTATATTTTTTNTA-CATTTTNTGTA-TATTTTTT-----------C-AA-TNAT--TATTCTAAAT-TTAAAC-TTCTTTT-TNTT--TTCTTCC--TAAAA-CCTATTCATGTA-TTTTGATATGA---ATTATAA----TGTATGTCTGTAACACTTTACTACATG--TATACATTT---TCATT--TAACACGTCCACCAANTGTTACTAAGCCATCGAGATATAATGCAA
gi|1 : TTTCTTTCAATGTCCCCGTTTCACAGAACAACGACTTCATTTA--------TTTAC--------------TGAAACAAGACC-ATG---T---CATCCTT-TGTGTAGTCAAAAGATTCTCTTT------A------TGCGTTTACTT-ATGTTGAAAAATGTGATCTTTTTGAAAACATTCACA----TGTAT----ATTAAAG-AAGCAAAACGTTTTAACGACTAGTAATTTAAATTTAAACTGCAGATTAAGATA---------TATT-CATTTTT-AGTCTTACAAAAGTTC-TTTGCGTGAGTCACGCGTA-----CC------GATTGAATGGA-TTTC-T-GGAATTAACTTTACAACTTGATAATACG---TTTTTCTTC------------TTAA---TTTATATATTTTTTTTA-CATTTTATAGACTAGTATCT-----------T-AA-TAATAAAATTCCAAAT-TTAAAA-TTCTTGT-TATT--TTCCCCCAATAAAA-CTCATTACTGTA-TTCTGATATGA---GTTAAAA----TGTGTGTCTGTAATATTTTACTACATG--TATACATTT---TCATT--TTATATGTGCATCAATTGTTACTAAGCCATCGAGATATAATACAA
gi|10 : GCGTATTTAAATGGT-CTGCTT------A------ATCTT--ATAT-GTGATGATAATTGTGATCTATATGGCAT--TTCGCT----TATATGTGCATTAATTTAAATAAAACGTTGTAACGACTAG-------TGTT--AACT
gi|11 : GTA-TTC-GATTTG-----TTAAAACATTTGCATGACAGTAACA-TTTACAACATG--TATACATTT---CCATT--TAACATGTCAACCTACTGGTACTAAGTCATCAAATTATAATGCA
gi|12 : ATGTG-TTTT-ATATGA---ATTACAA----TTCATGTCT--AACACATTACTACATG--TATACGTTG---TCATT--TAACAC--------AGTGGTACAAAGTCATCGAAATATAATGCAA
gi|13 : ttctgtTTTCTTTCAATATCTCCGTTTAAATGAACA-CATCTTCAAGTA--------TTTAC--------------TAAAACAAGACA-ATA----T--CATCCTA-TGAGTATTCAGAAGAATCTGTTT-------------TGCtt
gi|14 : TGTAACAATTTACCACAT------ACATTTCTTTTATTAGTTACATGTCCACCAAATGTTTCTAAGCCATCCAGATAGAACGCA
gi|15 : taaaataatttctaTTTCTTTCCCTGCTCTCATTTCTCTGAACAACGGCTTCGATTA--------TTTAC---------------AAA--AATACCTACATGTTT--TATCCCT-TGAGTATTTGAAATATTCT
gi|16 : ATTAATGTA-CTTTGATATGATGAATT-TAA----TGTGTATCTGTAATATTTTACTATATG--CAAACATTC---CCATT--TAATACGT
gi|2 : CCGTCTCTCTGAGCAACAGCTTCAATTACTCTACGGTTTACATGTCTCTGGTATCTATACCAAAACC-ATAA--TTACCATTATT-TGTGTACTCAGAAGATTCTGTTT------GGCAGAGTGCTTTGATTT-ATATTGAAAATTGTGATCTATTTGACAACGTTCGCA----TATAT----A-------------------TTAATGACAAGTAA---ATGTC--AACTACATATTTCGTGA---------TTTTATATATTT-AGTATTAC-AAACTCCATCTGT-TGAGTCTTGGGTAGTGTTCT------GTTTGAATGGAGTTTT-G-GGGCTTAATGCTACAACTTGAAAAAATA---GTTTTCTTC-GAAT----GTATT-----TTTGTATATTTTTTATG-CATTTTATTTG-TATTTTTTGTTTATTTCTAT-AA-GTAT--TATTCAAAAT-TTAAAA-TTCTTTA-TTTT--TTC-------AAAA-GTTATTCATTT--TTTTCTTATA-------ACAA----TGTATCTATGTATCATTTTACTACATG--TATACATTT---TCATT--TGA-------------TTTTACTAAACCATCGAGATATAATGCAAg
gi|3 : CC-ACA---TC----TCCATATGTGTATTCAAA---------CT------A------TGCTTTAACTT-GTGTT-AAAATTGTGATCTATTTGGCA-CATTCACA----CGTAT----ATTAAGT-AAACAAAGCGTTTTA-TGACTAGAAA---ATATT--AACTACGTATTCCGTGA---------TATT-TATGTTT-GGTATTACAAAAATCC-TC--CA-------------------------------AATGGA-TTTCTT-TGGCTTGACTTTACTACATTATAATAAATAGTTTTTCT-----AT----G-----------TGCATATTTGTCA-A-TATTTTAAGTA-T-TTTTTA-----------T-AA-GAA--------TAA---TTAAACTTTCTTTT-TA---------CA--AAAAA-TC--TTCATGT--TTTTTATATGA---ATGATAA----TAAATGTCTGTAACATTTTACT----------------------------ACACATCCACCTATTGGTTCTAAGCC-TCGAAATATAATGttcatcgtt
gi|4 : A----TATAC----ATTTTAC-AAACAAAACGGTTTAATGACTAGTAA---ACATT--AACTACACATTTTGTGAAACTTACTTTATT-TAGTTTTAAGTTTTTTAAAATATC-TCTGCAGGAGTCATGCGTA-----CTGTTTGAGTTTGAATGGA-GTTC-TGGGGATTAACTTTACAACTCGACAATACA---TTCTTCTTC-GAAT----GTAAT-A---TTT---TAATTTCTATATTATTTTT-------TCTTTT-----------C-GATTTAT--TA-TCTAAACGTTAAAC-TTCTTTT-TGTTCCTTCTTCC--T-AAA-CCTATTCATGTATTTTTGACATGA---ATTATAA----TGTATGTCTGTAACACGTTACTACATG--TTTATATAT---TCacattcatcg
gi|5 : aacaggcaCATGAGTCATTCGCA-----CC------GTTTGAATGAA-TTTC-TTGGGCTTAAGTTAACAGCTTGATAATATA---TTTTTGATCTAAATTCGCGTATT-GGTTTTTGTA-ACATTTTGTA-CAC-----GTA-TATCATTT-----------T-AA-TAATG-TATTTCAGA------AT-TTCACAT-TATT--TCTTTCC--TAAAAACCTATTAATGC--CTTCGATACGA---ATCTTAA----TGAGTGCCTGTAATAGTTTACTACCTG--TTTATATTT---TCATT--TAATATCTGCCTCAAATATCACTTAGCCATCGAGATGTAAT
gi|6 : TTTCTTTCAATGGCCCCTTCTCATTACAGAAAGGTTTCAATAA--------TCTAT--------------TTAACCAAAACC-ATA---T---CATCCTT-TGTGTACTCAAAAGATTCTATTGGCAGAAA------CGATTTAATTTTATGTTGAAAATTATGATATATTTGACTACATTCACATACGTATAT----ATTAAAC-AAAC-AGACGTTTAAAAGACTAGTAA---ACATT--TACTGCGTATTAACTGA---------AATT-AAATGTT-ATTATTACAAAAttatc
gi|7 : ACAATTCGACAATACA---TTCTTCTTCTGAAT----GTATT-G---TTT-TA-ATTT---CTA-TATTATTTGT--TGTCTTTT-----------CGAA-TTAT--TAT-CTAAAC-TTTAAC-TTCTTTTATTTTCCTTTTTCC--TAAA--CCTATTCATGTA-TTTTGACTTGA---TTTATAA----TGTTTGTCTGTAACACTTTACTACATG--TTTATAT-------ATT--TAGTATGTCTTTCAAATGTTACTAAGCAATCGAGATATAACGTAAg
gi|8 : -AA-TCAT--TGTCTTAACT-TTAAAC-TTCATTT-TTTT--TTCTTCC--TAAA--CCTATTCATGTA-TTTCGACATGA---ATTATAA----TGTATGTCTGTAACTCTTTACTACATGTTTATATATTT---acca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): CTACATATTTTGTGAAACTATCTTTATTTAGTTTTGAGTTTTACGAAATATCTCAGTAGGACAGACAACTCTTCTTCTGAATGTAATGTTTTAATTTCTATATAATTTTTCTTTTCAAATCATTGTC