lowQualScore : 1111111111111 1 3333333333333 111 11 1 11 1 11 111 222 11111111 111111111 111111111 111 1 111111111 22
lowQualScore : 2 333 333 1 0000000000000 333 8 333 2 2222222222222 555 1 2 22 2 7 2 0 00 7 7 6 0 2 0 5 3 44 0 3 999 2 555 33 555 333 111 2 11111111 000000000 444 333333333 66 1 6 888 5 5 33 7 000000000 22 7777 44 8 33
lowQualScore : . ... ... . ............. ... . ... . ............. ... . . .. . . . . .. . . . . . . . . .. . . ... . ... .. ... ... ... . ........ ......... ... ......... .. . . ... . . .. . ......... .. .... .. . ..
lowQualScore : 1 333 222 8 9999999999999 222 2 999 5 8888888888888 333 3 7 66 7 3 2 5 77 9 2 7 4 1 3 0 1 77 7 1 666 9 000 99 111 888 111 9 55555555 777777777 777 555555555 44 6 5 222 7 1 99 0 888888888 11 1111 66 8 99
consensus : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTCTCTTTT---TCTTCTTT-TTT-TTC--AGGG---CTTTG--TATTGCAGTG-AT-TTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACCGCAT-CNTGGGCGAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-C-ATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTAT-GCTTTTTTTCCTTTA--TAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA-A-----TTTNATT----TT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
Reference ( gi|3 ) : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GGTGAAGGAGG---TAGAAATAAAACTTTAGTTCTGTTTT---TCTTTTTT-TTT-TTC--AGCT---CTTTG--AACTGCAATG-TT-TTGTTTTTTGCTGGCATGAGTTAGATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACGGCAT-CTAGGGCGAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-C-ATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTAT-ACTTTTTTTTCTTTT--TAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACTTGCTGCAGA-A-----TTTCATT----TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|4 : GGACTCA-CACCAATA---TTAT---CTCCCT-TGAGTACTCCGGA--------------TGAAGGAGG---TAGAAATAAAACTTTAGTTCTCTTTT---TCTTCGTT-TTT---C--AGGG---CTTTG--TATTGCAATG-TT-GTTTTTTTTGCTAGCATGAGTTAAATGGTCCGTATTTTAGAAATCACCACTGAAAATATGATGCTGATACCAGCGTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGCTCGAACCGCAT-CTAGGGCGAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAAGG-C-ATTGCATT--T-----TTAAAA---------A---AA-AA------CCTGGTTAAGGTAT-AC-TTTTTTTCTTTA--TAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA-A-----TTTAATT----TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCTTATGGGAAATGTAA--TAGTGGTGTGAGCCGT
gi|8 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGAC---------A-GATGAAGGAGG---TAGAAATAAAACTTTAATTCTCTTTT---TCTTCTTT-TTT---C--AGGG---CTTTG--TACTTCAATG-TT-TTGTTTTTTGCTAGCATGAGTTAAATGGTCAGTATTTTAAAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGAACAATTC--TGTCATTTCAGAATTGTTGATTCGAACCGCAT-CTAGGGCAAAT-AGCTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCG-CAAAA-G-C-ATTGATTT--TTTTAAAAAAAA---------A---AAAAA------CCTAGTCAAGGTAT-ACTATTTTTCTTTTA--TAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA-A-----TTTAATT----TT--TCGCTCGGTTTTGGACATA--------AATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGA
gi|2 : GGACTCA-CACCACTA---TTAT---CTCCCT-TAAGTACTCAAGCCCT-----ACA-GATGAAAGAGG---TAGATATAAAACTTCAGTTCTATTTT---TCTTCTTT-TTT---C--AGTG---CTTTG--AACTGCAGTG-AT-TTATTTTTTTCTAGCACAAGTTAAATATTCAGTATTTTAGAAATCACCACTCAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACCACAT-CTTTGGCAAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-TAAAA-G-C-ATTGAATTTGT-----AAGAAA---------A---AAC-A------CCTGGTCAAGGTCT-GCATTTTTTCCTTTA--TAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATTCTGCAGA-T-----TTTGTTT----TT--TCACTGTGTTTTGGATATGAATGTTACAATGGAGCCCTATGGGAAATGTAA--CAGTGGTGTGAGAAGT
gi|7 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTTCAGACCT-----ACA-GATGAAGGAGG---TAGAAATACAACTTTAGTTCT---CT---TCTTTTTC-TTT-TTT--AGGG---CTTTG--TACTGTAATGGTTGTTTTTTTTTGCTGGCTTTAGTTATA--------AT-----AAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATGCTGTGTTATTTCAGAATTGTTGGTTCG-----CAT-CTAGGGCGATT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AAG--T--CTCA-C-AAAAG-C-ATTGAGTT--T-----AGAAAA---------A---AACAAAAACAACCCGGCCAAAGTAT-GCTTTTTTCCCTTTA--TAATT-GCATATC--TTGAACTAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA-A-----TTTGATT----TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCTCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|5 : GGACTCA-CACCACAA---TTAT---CTCCCT-TGAGTACTCCAGACCT-----ACA-GATGAAGGAGG---TAAAAATAAAACTTTTGTTCTCTTTT---TCTCCTTT-TTT-T----AGGT---CCTTC--TACTGCAGTG-AT-TTATATTTTCCTGGCATTAGTTAAATGGTCAGTA-----GAAATCACCACTGAAAAATTTATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATGGTTGGTTCAAACCACAT-CGTGGGCAAAT-AGTTGACATATTATTACT---CTGGAA-CTG-AT---AGG--T--CTCA-T-AAAAG-C-ATTGAATT--T-----AAAAAA---------A---AA--A------CCTGGTCAATGTAT-GCTTTTTTC-CTTTA--TAATTAGAAAATC--TTGATCCAGTGATGAATTTGAGCCCAAACACATGCTGCAGATA-----TTGT-TT----TT--TCACTATGTTTTGGACATAAATGTTACAAAGGAGCCCTATGAGAAATGTAA--TAGTGGTGTGAGAC
gi|6 : GGACTCAACATAACTT---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-TATCAAGGCGG---TAGAAATTAAACTTTAGTTCTCTTTT---TCTTCTTT-TTT---C--AGGG---TTTTG--TACTGCAGTG-AT-TTATTTTTTACTACCATGTGTTAAATGGTCAGTATTGTAGAAATCACCTATGACAATTTGATGCTGATAC------------CAATTCTGTGTCATTTTAGAACTGTTTGTTCGAACCACAT-CGTGAGCGAAT-AGTTGACACATTATT-TT---CCGGAAATTG-AT---AGGTAT--CTCA---AAA-C-C-ATTCAATT--A-----AAATAA---------A---CCCAA------CCTGGTCATGACAT-GCTTTTTTCCCCCTTAATAATT-GCAGATC--TTGAACCAGTGAAGAATTTGAGCCTAGACACATGCTGCAG--A-----TTTTGTT----TT--TCACTGTGTTTTGGACATAAAAGTTACAATGAAGCCCTATGGTAAATGTAA--AAGTGGTGTGAGACG
gi|1 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TTGGTACTCAGGAC---------A-GATGAAAGCGG---TAGAAATTAAACTTTAATTCTCTTTTCCTTCTTTTTT-TTTCTTC--AGGG---CTTTGTAAATTGCAGTG-AT-TTATATTTTCCTACCATGTGTTTAACGGTCATTATTTTAGAAATCACGACTGAAAATTTGATGCTGATACCAGATTTCTAGGCAATTCTGTATCATTTTAGAATTGTTGGTTCGAACCGCAT-CATGGTCGAAT-AGTTGACATA--ATCTCTTTCCTGCAAATTG-AT---AGT--T--ATCA-CGAAA-C-C-ATTGAATT--A-----CAAAGA---------A---AACAA------CCTGGTCAGCGTTT-GCTGTTTTTCTTTTA--TAATC-GCAGATC--TTGAACCAGTGAAAATTTTGAGCCCAGACACATTCTGCA-A-A-----TTTTGTT----TTTGTCACTGTGTTTTGG----AAATGTTACAATTGAGCCATATGGGAAATGTAC--TAGTGGTATGAGACGT
gi|12 : aGGACTCA-CACCGCTA---TTAT---CTCCCC-TGAGTACTCCGG-----------A-GATGAAGGAGG---TAGAGATTAAACTTTAGTTCT-TTTT---TTTCTTCT-CTT-TTC--AGGG---CTTTG--TATTGCAGTG-AT-GTATTTATC-CTACCATGTGGTAAACGGTTAGTATTAAAGAAATCGCCATTTGAAATTGGATG------CCAGATTTCT
gi|16 : aGGACTCG-CACCACTA---TTAT---CTCGCT-TGAATTCTCCGGACTT-----ACA-GATAAAT-AGG---TAAAAATTAAACTTTAAATCTCTTTT---TCTTCTTT-TGT-TTC--AGGG---CTTTC--CATTGCAGCG-AT-TTATTTTTTCCTACCATGCGTTAACTG-TCAGTATTTTAGAAATCATCACTGACAATTTGATGTTGATACCAGATTTCTAGGTAATTtcaaaatcattgaattaaaaaaacacaacacaaaacaacctggacaaggtatactttgttcccttcataacttcagatattgaacaattgaagaatttgaacccagacacatgttgcagatttttttttcactgtgttttggacataaatgttacaatggagccctgtgggaaatgtaatagtagtgtgagacga
gi|13 : GGAATCA-CACAACTA---TTAT---CTTCTTATTA-TATCCCGGACC----------GATAAAGAACG---TAGTAGTTAAATTATAGTTCGAATTT---CCTCTTTT-T--------AAATGGACTTTA--AAATGCAGCA-AT-TAATTT-------------GTTAAATGATAAATATTTTAGAAATCACCACAGAATATTTGATGCTGATACCAGATTTCTAGAC--TT--------------AA----TGGGTCGAATCGCAT-CTTGGGAGGAT-TGTTTACCTATCATAACT---CTTGAAATTG-AC---AGG--T--GTCA-A-AAA-A-C-----CATT--T---------AG---------A---AATAA------CGTGATCAAGGTGTGA-----------TTT--TAATCAGTGAACCAGTT-AACCAGTGAGGAATTTGAACCAAGTCGCATGTTG
gi|15 : GGACTCA-CTGCAGTT---TTAT---CTTCTT-TGAATACCTCAGATCT-----ACA-GATAAAGGAAT---AAGAAGCAAAACTACAGTT-TG--------CTTTTT-------------CT---CTTTA--TATTGCAGCG-AT-TTGTTTATTTCTGCCATGTGTTAAATGGCCAGTTTTTCAGAAATCACAATTGCACATTTGAAGCTGATAACAGGTTTCTAGCTTATTCTGTGTCAATTTAAA
gi|27 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCC-----ACA-GATGAAGGAGG---TAGc
gi|24 : GGACTCA-TGCCACTG---GTAT---CTCCCT-TGAGAACTCCGGACCT-----ACA-GATGAAAGAAG---GAGAAATAAAACTT
gi|29 : GGACTCA-CACCACTA---TTAT---CTCCCT-
gi|20 : ttcaGGACTCA-ATATACTAGGTTTGT---CT---T-TGAATACTTCGGTTCTGCTACACATGATGGAGGAAGAAGCAGAAATA------TAG---TGTTTT---T
gi|22 : cttttatttgcaGACTCA-CATCACTA---TTAT---CTGCCC-TGAATAC-----------------------------------AAATAAAAC-TTAATTAT-TTTT---TGTTTTGT-TTT-T
gi|10 : acagacACTCA-TACCACTA---TTAT---CTCCCT-TGAGTACTTTGGACCT---------GATGATTGGGG---TAGACATAAAACTTAAGTTCTCTTTT---TCTTCTTT-TTT-TTC--AGGG---CTTTG--TATTGTAGTG-AT-TTATTTTTTCCTACTATGTGTTCAATGGTTAGTATTTTAGAAATTACCGTTGAAAATTTGATGCTGATACAAGATTTCTGGGCAATTTTGTGCCATTTCAGAATCGTTGGTTCGAACCGCAT-C------------GTGGACGTATTATTACT---CTGGAAATTT-GT---A--------TCA-T-AAA-ACC-ATTGAATT--A-----AAAAGA---------AATGAACAA------CCTGGTCAAGGTAT-GCTTTTTTCCCTTTA--TAATT-GCATATT--TTGAACCAGTGAAGAATTTGTGCCCAGACACATGCTGCAG--A-----TTT--TT----TT--T------------GACATAGATGTTACAATGAAGTCCTGTGGGAAATGTAA--TAGTGATATGAGACGTgttgggctt
gi|11 : ACTTA-CTACAATA---TTAT---CTCCCT-TGAATA----GAGTCG-----A-------AAGGAGA---TAGGAGTAAAACTATAGCTCCCTTTT---TCTCCTTTGTTT-TTCCAAGGT----TTTA--TATTG--AT-----CTATTTATTCCTACCATTTGTTAAAT----------TTAGAAATCACCACCGAAAATTTGATTCTGATACCAG----------AGTTCTA-GCCA----AGCAT-----------GCGGTGTGCTAG----AATTGGTTGACATGTTATTACG---CTGGGCATTG-AT---AAG--TATTTCA---AAA-C-C-ACCGAATT---------AAATA---------A---AA-----------TGGTTAATGTAT-GATTTTTTTTCTTTA--TAACT-GCAGATC--TTGAACCAGTGGAGAATATGAA-CCAGACACATGCTGTA-A-A-----T---AGTGTGGTT--TCACCGTGTTTTGGACATAAATGTTAC
gi|9 : aagcCTCG-CACCACTA---TTGT---CTCCCT-TGAATACTCTGGACCT-----ACA-GATGAAGGAGG---TAGTAGTAAAAATACAGTTCC-CTTT---TCTTCTTT-TT----C--AAGA---CTTTA--TATTCCATTG-AT-TTATTTATTCTTACCATGTGTTAAGTGGTCAATATTATAGAAACCATCACTAAAAATTTAATGCCAATACCACCTTTCAAGCAAATTCTGTGTCATTTTAGACTTCATGGGTCGAAT--CAT----------AT-TGTTGATATATTATTACT---CTGGAAACTG-AC---AGA--C--GTCA-C-AAA-A-CCATTGAATT--T-----AAAAAA---------T---AAAAA------CCTGGTCAAAGTATGACTTTTTTTGC-GTA--TAATT-GCAAATC--TTGAAGCAGTGAAGACTTTGAGCCAATACGCACGCTGCTGA-T-----TTTAATT----TT--TCACGGTGTTGTTGATAAAAGTTTTATAATGGAGCCCTATGGGAAATTTAA--TAATGGCGTGAGAC
gi|26 : ACTT---TTAT---CTCCCT-TTAAAAATCAG----C-----ACA-AATGAAGGAGG---TATTAGTAACAATATAGTTCa
gi|28 : A---TTATATTCTCCCT-TGAGTACT-------------ACA-GATGAAGGAGG---TAc
gi|21 : T---CGCCAT-TGATCACGCCG-ACCT-----ACA-GATGATGAATT---TAAAAGTAGAAATATAGTTTT-TTTT---TCTTTTTta
gi|14 : atgg-GATGAAGGAGT---TAGAAGTAAAACTTT----------T---TCTTCTTT-TTT---C--AGGA---TTTCG--TATTGCAGTC-TT-TT-TTTCTTAC-------------ATGGTCAGTATTTTAGGAATTACAACT-AAAATGTGATGCTGATATCAGACTTCTAGGCAATTCTGTGTCATTTTAGATTTGATCGTTCGGAATGAAT-CGTGGGCAAAG-ATTTGACATATTATTACCAA-CTGGAAATTG-AT---AAA--T--CTCG-C-AAA-ACC-AATGAA-T--T-----AAATAA---------A---GACAA------ATTGGcatcactttattttc
gi|19 : GTTCGAACCGCAT-TGTGGGCGAAT-AGTTAACATATTATTACT---TTGGAAATTG-TT----GG--T--ATCA-C-AAAAG-C-ATTGAATT--T-----AAAAAT---------A---AA-----------TGGTCAAGGTAT-GC--TTTTTTCGTTTA-TAATA-GCATTTC--TTGGA
gi|12 : GAAATTGGATGCCAGA--T--TTCTTC-AAA-ATC-ATTGAATT--A-----AAAAAACACAACACAA---AACAA------CCTGGACAAGGTAT-ACTTTGTTCCCTTCA--TAACT-TCAGATA--TTGAACAATTGAAGAATTTGAACCCAGACACATGTTGCAGA-T-----TTT--TT----TT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTGTGGGAAATGTAA--TAGTAGTGTGAGACGtacaatcggtacctatgggaaatgtaatagtggtgtgagac
gi|18 : aggactcacaccgctattatctcccctgagtactccggagatgaaggaggtagagattaaactttagttcttttttttcttctcttttcagggctttgtattgcagtgatgtatttatcctaccatgtggtaaacggttagtattaaagaaatcgccatttT--T-----AAAAAA---------A----------------TGGTCAAGGTAA-GCTGTTTTTCCTTTA--TAATT-GCAGATC--TTGAAACAGTGAACAATTTGAGCCCAGACACATGCTGCA-A-ATGTTTTTTTTTT----TT--TCACTGTGTTTTGGACATGAATG----AATTGAGCCCTATGGGAAATGTAATTTAGTGATGTGAGACGTa
gi|19 : aaTACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACt
gi|17 : gttcgaaccgcattgtgggcgaatagttaacatattattactttggaaattgttggtatcacaaaagcattgaatttaaaaataaatggtcaaggtatgcttttttcgtttataatagcatttcttggaTACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|25 : aATGGGAAATGTAA--TAGTGGTGTGAGACGaatatgactggatggggaaacatactatgtatatgtgacatggtacgctaggcttgcagtgctaagaatatttcctcaagtagaacccgtcgcgatatgactgaagcgttgttgaaaacgacgctaaataaaaaatgtttctaataactgtgac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): AATATCCAGACTGCATATAAAGGTAATAGGAAGCAAAACATTTTGATTTTTTTCTGTTTGCACAGATTT
Alignments
lowQualScore : 1111111111 111 111 11111111 111111111 111111111 111111
lowQualScore : 2 333 333 1 99999999 1 333 2 2 33 8888888888 33 0 2 2 1 33 2 33 33 2 888 2 444 33 444 222 666 5 00000000 000000000 444 000000000 2 33 5 1 33 444444 99 3 44 44 0 33
lowQualScore : . ... ... . ........ . ... . . .. .......... .. . . . . .. . .. .. . ... . ... .. ... ... ... . ........ ......... ... ......... . .. . . .. ...... .. . .. .. . ..
lowQualScore : 0 222 000 7 77777777 7 000 1 2 11 4444444444 22 8 8 8 4 99 9 99 99 9 999 7 777 77 111 222 333 3 22222222 000000000 444 999999999 7 77 3 0 77 222222 22 1 22 22 8 44
consensus : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-C-ATTGAATT--T-----AAAAAA---------AA---ACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----TTTNNT-T--TT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
Reference ( family-4541 ) : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CN-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-C-ATTGAATT--T-----AAAAAA---------AA---ACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----TTTNAT-T--TT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|1 : GGACTCA-CACCACTA---TTAT---CTCCCT-TTGGTACTCAGGAC---------A-GATGAAAGCGG---TAGAAATTAAACTTTAATTC-TCTTTT-CCTTCTTT--TT---TTTTCTTCAGGGCTTTGTAAATTGCAGTGATTTATATTTTCCTACCATGTGTTTAACGGTCATTATTTTAGAAATCACGACTGAAAATTTGATGCTGATACCAGATTTCTAGGCAATTCTGTATCATTTTAGAATTGTTGGTTCGAACC--GCAT-CA-TGGTC--GAAT-AGTTGACATA--ATCTCTTTCCTGCAAATTG-AT---AGT--T--ATCA-CGAAA-C-C-ATTGAATT--A-----CAAAGA---------AA---ACAA------CCTGGTCAGCGTTTG-CTGTTTT--TCTTTTATAATC-GCAGATC--TTGAACCAGTGAAAATTTTGAGCCCAGACACATTCTGCA-AA-----TTTTGT-T--TTTGTCACTGTGTTTTGG----AAATGTTACAATTGAGCCATATGGGAAATGTAC--TAGTGGTATGAGACGT
gi|10 : aACTCA-TACCACTA---TTAT---CTCCCT-TGAGTACTTTGGACCT---------GATGATTGGGG---TAGACATAAAACTTAAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGTAGTGATTTATTTTTTCCTACTATGTGTTCAATGGTTAGTATTTTAGAAATTACCGTTGAAAATTTGATGCTGATACAAGATTTCTGGGCAATTTTGTGCCATTTCAGAATCGTTGGTTCGAACC--GCAT-CG-TGGAC--G------------TATTATTACT---CTGGAAATTT-GT---A--------TCA-T-AAA-A-CCATTGAATT--A-----AAAAGA---------AATGAACAA------CCTGGTCAAGGTATG-CTTTTTT--CCCTTTATAATT-GCATATT--TTGAACCAGTGAAGAATTTGTGCCCAGACACATGCTGCAGA-------------T--TT--T-------TTTTG-ACATAGATGTTACAATGAAGTCCTGTGGGAAATGTAA--TAGTGATATGAGACGT
gi|11 : ACTTA-CTACAATA---TTAT---CTCCCT-TGAATA----GAGTC----------GA--AAGGAGA---TAGGAGTAAAACTATAGCTC-CCTTTT-TCTCCTTTGTTT---TTC----CAAGGTTTTATA--TTG-----ATCTATTTATTCCTACCATTTGTTAAAT----------TTAGAAATCACCACCGAAAATTTG------------------------ATTCTG----ATACCAGA-------GTTCTAGCCAAGCATGCGGTGTGCTAGAATTGGTTGACATGTTATTACG---CTGGGCATTG-AT---AAG--TATTTCA---AAA-C-C-ACCGAATT---------AAATA---------AA---A-----------TGGTTAATGTATG-ATTTTTT--TTCTTTATAACT-GCAGATC--TTGAACCAGTGGAGAATATGAA-CCAGACACATGCTGTAAA--------TAGTGTGGTT--TCACCGTGTTTTGGACATAAATGTTAC
gi|12 : aagcGGACTCA-CACCGCTA---TTAT---CTCCCC-TGAGTACTCCGG-----------A-GATGAAGGAGG---TAGAGATTAAACTTTAGTTCTTTTTTT-TCTTC--T--CT---TTT----CAGGGCTTTGTA--TTGCAGTGATGTA-TTTATCCTACCATGTGGTAAACGGTTAGTATTAAAGAAATCGCCATTTGAAATTGGATG------CCAGATTTCT
gi|12 : aGAAATTGGATGCCAGA--T--TTCTTC-AAA-ATC-ATTGAATT--A-----AAAAAACACAACACAAA---ACAA------CCTGGACAAGGTATA-CTTTGTT--CCCTTCATAACT-TCAGATA--TTGAACAATTGAAGAATTTGAACCCAGACACATGTTGCAGAT-----TTT--T-T--TT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTGTGGGAAATGTAA--TAGTAGTGTGAGACGtcaaaatcattgaattaaaaaaacacaacacaaaacaacctggacaaggtatactttgttcccttcataacttcagatattgaacaattgaagaatttgaacccagacacatgttgcagatttttttttcactgtgttttggacataaatgttacaatggagccctgtgggaaatgtaatagtagtgtgagacga
gi|13 : aggactcacaccgctattatctcccctgagtactccggagatgaaggaggtagagattaaactttagttcttttttttcttctcttttcagggctttgtattgcagtgatgtatttatcctaccatgtggtaaacggttagtattaaagaaatcgccatttGGAATCA-CACAACTA---TTAT---CTTCTTATTA-TATCCCGGACC----------GATAAAGAACG---TAGTAGTTAAATTATAGTTC-GAATTT-CCT-CTTT--TTAAAT--------GGACTTTAAA--ATGCAGCAATTAATTT-------------GTTAAATGATAAATATTTTAGAAATCACCACAGAATATTTGATGCTGATACCAGATTTCTAGAC-------------TT---AAT----GGGTCGAATC--GCAT-CT-TGGGA--GGAT-TGTTTACCTATCATAACT---CTTGAAATTG-AC---AGG--T--GTCA-A-AAA-A-C-----CATT--T---------AG---------AA---ATAA------CGTGATCAAGGTGTG-ATTT------------TAATCAGTGAACCAGTT-AACCAGTGAGGAATTTGAACCAAGTCGCATGTTGa
gi|14 : -GATGAAGGAGT---TAGAAGTAAAACTTT-----------T-TCTTCTTT--TT---T------CAGGATTTCGTA--TTGCAGT---CT-TTTTTTCTTAC----------ATGGTCAGTATTTTAGGAATTACAACT-AAAATGTGATGCTGATATCAGACTTCTAGGCAATTCTGTGTCATTTTAGATTTGATCGTTCGGAAT--GAAT-CG-TGGGC--AAAG-ATTTGACATATTATTACCAA-CTGGAAATTG-AT---AAA--T--CTCG-C-AAA-ACC-AATGAA-T--T-----AAATAA---------AG---ACAA------ATTGG
gi|15 : GGACTCA-CTGCAGTT---TTAT---CTTCTT-TGAATACCTCAGATCT-----ACA-GATAAAGGAAT---AAGAAGCAAAACTACAGTTT-GCTTTT-TCT------------------------CTTTATA--TTGCAGCGATTTGTTTATTTCTGCCATGTGTTAAATGGCCAGTTTTTCAGAAATCACAATTGCACATTTGAAGCTGATAACAGGTTTCTAGCTTATTCTGTGTCAATTTAAA
gi|16 : aGGACTCG-CACCACTA---TTAT---CTCGCT-TGAATTCTCCGGACTT-----ACA-GATAAAT-AGG---TAAAAATTAAACTTTAAATC-TCTTTT-TCTTCTTT--TG---TTT----CAGGGCTTTCCA--TTGCAGCGATTTATTTTTTCCTACCATGCGTTAACT-GTCAGTATTTTAGAAATCATCACTGACAATTTGATGTTGATACCAGATTTCTAGGTAATTc
gi|17 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|18 : aT--T-----AAAAAA---------A----------------TGGTCAAGGTAAG-CTGTTTT--TCCTTTATAATT-GCAGATC--TTGAAACAGTGAACAATTTGAGCCCAGACACATGCTGCA-AATGTTTTTTTTT-T--TT--TCACTGTGTTTTGGACATGAATG----AATTGAGCCCTATGGGAAATGTAATTTAGTGATGTGAGACGTaatatgactggatggggaaacatactatgtatatgtgacatggtacgctaggcttgcagtgctaagaatatttcctcaagtagaacccgtcgcgatatgactgaagcgttgttgaaaacgacgctaaataaaaaatgtttctaataactgtgac
gi|19 : aaGTTCGAACC--GCAT-TG-TGGGC--GAAT-AGTTAACATATTATTACT---TTGGAAATTG--T---TGG--T--ATCA-CAAAA-G-C-ATTGAATT--T-----AAAAAT---------AA---A-----------TGGTCAAGGTATG-C-TTTTT--TCGTTTATAATA-GCATTTC--TTGGAt
gi|19 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACtacaatcggtacctatgggaaatgtaatagtggtgtgagac
gi|2 : gttcgaaccgcattgtgggcgaatagttaacatattattactttggaaattgttggtatcacaaaagcattgaatttaaaaataaatggtcaaggtatgcttttttcgtttataatagcatttcttggaGGACTCA-CACCACTA---TTAT---CTCCCT-TAAGTACTCAAGCCCT-----ACA-GATGAAAGAGG---TAGATATAAAACTTCAGTTC-TATTTT-TCTTCTTT--TT---T------CAGTGCTTTGAA--CTGCAGTGATTTATTTTTTTCTAGCACAAGTTAAATATTCAGTATTTTAGAAATCACCACTCAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--ACAT-CT-TTGGC--AAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-TAAAA-G-C-ATTGAATTTGT-----AAGAAA---------AA---AC-A------CCTGGTCAAGGTCTG-CATTTTT--TCCTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATTCTGCAGAT-----TTTGTT-T--TT--TCACTGTGTTTTGGATATGAATGTTACAATGGAGCCCTATGGGAAATGTAA--CAGTGGTGTGAGAAGT
gi|20 : aGGACTCA-ATATACTAGGTTTGT---CT---T-TGAATACTTCGGTTCTGCTACACATGATGGAGGAAGAAGCAGAAATA
gi|21 : cttttatttgcaT---CGCCAT-TGATCACGCCG-ACCT-----ACA-GATGATGAATT---TAAAAGTAGAAATATAGT-----TTTT-TTTTCTTT--TT---CAT----CA---CTTTATT--TTtagtgttttt
gi|22 : atggGACTCA-CATCACTA---TTAT---CTGCCC-TGAATAC-----------------------------------AAATAAAAC-TTAATTA-TTTTTTGTTTTGTTT--TT---GTT------GGGCTTc
gi|24 : acagacGGACTCA-TGCCACTG---GTAT---CTCCCT-TGAGAACTCCGGACCT-----ACA-GATGAAAGAAG---GAGAAATAAAACTT
gi|25 : ATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|25 : TATGGGAAATATAA--TAGTTGTGTGAGACGTaacaatatgtatgggaaatataatagttgtgtgagacgt
gi|26 : atgggaaatgtaatagtggtgtgagacgaacaatatgACTT---TTAT---CTCCCT-TTAAAAATCAG----C-----ACA-AATGAAGGAGG---TATTAGTAACAATATAGTTC-
gi|27 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCC-----ACA-GATGAAGGAGG---TAGc
gi|28 : A---TTATATTCTCCCT-TGAGTACT-------------ACA-GATGAAGGAGG---TA
gi|29 : GGACTCA-CACCACTA---TTAT---CTCCCT-ta
gi|3 : ttcaGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GGTGAAGGAGG---TAGAAATAAAACTTTAGTTC-TGTTTT-TCTTTTTT--TT---TTT----CAGCTCTTTGAA--CTGCAATGTTTTGTTTTTTGCTGGCATGAGTTAGATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACG--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-C-ATTGAATT--T-----AAAAAA---------AA---ACAA------CCTGGTCAAGGTATA-CTTTTTT--TTCTTTTTAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACTTGCTGCAGAA-----TTTCAT-T--TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|4 : GGACTCA-CACCAATA---TTAT---CTCCCT-TGAGTACTCCGGA--------------TGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCGTT--TT-----T----CAGGGCTTTGTA--TTGCAATGTTGTTTTTTTTGCTAGCATGAGTTAAATGGTCCGTATTTTAGAAATCACCACTGAAAATATGATGCTGATACCAGCGTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGCTCGAACC--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAAGG-C-ATTGCATT--T-----TTAAAA---------AA---A-AA------CCTGGTTAAGGTATA-CTTTTTT--T-CTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----TTTAAT-T--TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCTTATGGGAAATGTAA--TAGTGGTGTGAGCCGT
gi|5 : GGACTCA-CACCACAA---TTAT---CTCCCT-TGAGTACTCCAGACCT-----ACA-GATGAAGGAGG---TAAAAATAAAACTTTTGTTC-TCTTTT-TCTCCTTT--TT---TT------AGGTCCTTCTA--CTGCAGTGATTTATATTTTCCTGGCATTAGTTAAATGGTCAGTA-----GAAATCACCACTGAAAAATTTATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATGGTTGGTTCAAACC--ACAT-CG-TGGGC--AAAT-AGTTGACATATTATTACT---CTGGAA-CTG-AT---AGG--T--CTCA-T-AAAAG-C-ATTGAATT--T-----AAAAAA---------AA---A--A------CCTGGTCAATGTATG-CTTTTTT---CCTTTATAATTAGAAAATC--TTGATCCAGTGATGAATTTGAGCCCAAACACATGCTGCAGAT-----ATTGTT-T--TT--TCACTATGTTTTGGACATAAATGTTACAAAGGAGCCCTATGAGAAATGTAA--TAGTGGTGTGAGAC
gi|6 : GGACTCAACATAACTT---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-TATCAAGGCGG---TAGAAATTAAACTTTAGTTC-TCTTTT-TCTTCTTT--T-----TT----CAGGGTTTTGTA--CTGCAGTGATTTATTTTTTACTACCATGTGTTAAATGGTCAGTATTGTAGAAATCACCTATGACAATTTGATGCTGATAC------------CAATTCTGTGTCATTTTAGAACTGTTTGTTCGAACC--ACAT-CG-TGAGC--GAAT-AGTTGACACATTATT-TT---CCGGAAATTG-AT---AGGTAT--CTCA---AAA-C-C-ATTCAATT--A-----AAATAA---------AC---CCAA------CCTGGTCATGACATG-CTTTTTTCCCCCTTAATAATT-GCAGATC--TTGAACCAGTGAAGAATTTGAGCCTAGACACATGCTGCAG-A-----TTTTGT-T--TT--TCACTGTGTTTTGGACATAAAAGTTACAATGAAGCCCTATGGTAAATGTAA--AAGTGGTGTGAGACG
gi|7 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTTCAGACCT-----ACA-GATGAAGGAGG---TAGAAATACAACTTTAGTTC-TCTTCT-TTTTCTTT--TT---T-------AGGGCTTTGTA--CTGTAATGGTT-GTTTTTTTTTGC--TGGCTT---TAGTTA-TA----ATAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATGCTGTGTTATTTCAGAATTGTTGGTTCG-------CAT-CT-AGGGC--GATT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AAG--T--CTCA-C-AAAAG-C-ATTGAGTT--T-----AGAAAA---------AA---ACAAAAACAACCCGGCCAAAGTATG-CTTTTTT--CCCTTTATAATT-GCATATC--TTGAACTAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----TTTGAT-T--TT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCTCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|8 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGAC---------A-GATGAAGGAGG---TAGAAATAAAACTTTAATTC-TCTTTT-TCTTCTTT--TT---T------CAGGGCTTTGTA--CTTCAATGTTTTGTTTTTTGCTAGCATGAGTTAAATGGTCAGTATTTTAAAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGAACAATTCTGT--CATTTCAGAATTGTTGATTCGAACC--GCAT-CT-AGGGC--AAAT-AGCTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCG-C-AAAAG-C-ATTGATTT--TTTTAAAAAAAA---------AA---AAAA------CCTAGTCAAGGTATA-CTATTTT--TCTTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----TTTAAT-T--TT--TCGCTCGGTTTTGGACATA--------AATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGA
gi|9 : CTCG-CACCACTA---TTGT---CTCCCT-TGAATACTCTGGACCT-----ACA-GATGAAGGAGG---TAGTAGTAAAAATACAGTTC-CCTTTT-----CTTC--TT---TTT----CAAGACTTTATA--TTCCATTGATTTATTTATTCTTACCATGTGTTAAGTGGTCAATATTATAGAAACCATCACTAAAAATTTAATGCCAATACCACCTTTCAAGCAAATTCTGTGTCATTTTAGACTTCATGGGTCGAA-------T-CA-T--------AT-TGTTGATATATTATTACT---CTGGAAACTG-AC---AGA--C--GTCA-C-AAA-A-CCATTGAATT--T-----AAAAAA---------TA---AAAA------CCTGGTCAAAGTATGACTTTTTT--TGC-GTATAATT-GCAAATC--TTGAAGCAGTGAAGACTTTGAGCCAATACGCACGCTGCTGAT-----TTTAAT-T--TT--TCACGGTGTTGTTGATAAAAGTTTTATAATGGAGCCCTATGGGAAATTTAA--TAATGGCGTGAGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AATATCCAGACTGCATATAAAGGTAATAGGAAGCAAAACATTTTGATTTTTTTCTGTTTGCACAGATTT
Alignments
lowQualScore : 1111111111 111 222 11111111 111111111 111111111
lowQualScore : 2 333 333 1 99999999 1 333 2 2 33 8888888888 33 0 2 2 1 33 2 888 33 2 888 2 444 33 444 222 111 00000000 000000000 444 000000000 2 33 5 1 33 88888888 3 22 44 0 33
lowQualScore : . ... ... . ........ . ... . . .. .......... .. . . . . .. . ... .. . ... . ... .. ... ... ... ........ ......... ... ......... . .. . . .. ........ . .. .. . ..
lowQualScore : 0 222 000 7 77777777 7 000 1 2 11 4444444444 22 8 8 8 4 99 9 444 99 9 999 7 777 77 111 222 777 22222222 000000000 444 999999999 7 77 3 0 77 55555555 1 00 22 8 44
consensus : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
Reference ( family-4541 ) : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|1 : GGACTCA-CACCACTA---TTAT---CTCCCT-TTGGTACTCAGGAC---------A-GATGAAAGCGG---TAGAAATTAAACTTTAATTC-TCTTTT-CCTTCTTT--TT---TTTTCTTCAGGGCTTTGTAAATTGCAGTGATTTATATTTTCCTACCATGTGTTTAACGGTCATTATTTTAGAAATCACGACTGAAAATTTGATGCTGATACCAGATTTCTAGGCAATTCTGTATCATTTTAGAATTGTTGGTTCGAACC--GCAT-CA-TGGTC--GAAT-AGTTGACATA--ATCTCTTTCCTGCAAATTG-AT---AGT--T--ATCA-CGAAA-C-CATTGAATT--A-----CAAAGA---------A---AACAA------CCTGGTCAGCGTTTG-CTGTTTT--TCTTTTATAATC-GCAGATC--TTGAACCAGTGAAAATTTTGAGCCCAGACACATTCTGCA-AA-----T-TTTGTTTTTGTCACTGTGTTTTGG----AAATGTTACAATTGAGCCATATGGGAAATGTAC--TAGTGGTATGAGACGT
gi|10 : aACTCA-TACCACTA---TTAT---CTCCCT-TGAGTACTTTGGACCT---------GATGATTGGGG---TAGACATAAAACTTAAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGTAGTGATTTATTTTTTCCTACTATGTGTTCAATGGTTAGTATTTTAGAAATTACCGTTGAAAATTTGATGCTGATACAAGATTTCTGGGCAATTTTGTGCCATTTCAGAATCGTTGGTTCGAACC--GCAT-CG-TGGAC--G------------TATTATTACT---CTGGAAATTT-GT---A--------TCA-T-AAA-ACCATTGAATT--A-----AAAAGA---------AATGAACAA------CCTGGTCAAGGTATG-CTTTTTT--CCCTTTATAATT-GCATATT--TTGAACCAGTGAAGAATTTGTGCCCAGACACATGCTGCAG-A-----T-TTTTTTT----------------GACATAGATGTTACAATGAAGTCCTGTGGGAAATGTAA--TAGTGATATGAGACGT
gi|11 : ACTTA-CTACAATA---TTAT---CTCCCT-TGAATA----GAGTC----------GA--AAGGAGA---TAGGAGTAAAACTATAGCTC-CCTTTT-TCTCCTTTGTTT---TTC----CAAGGTTTTATA--TTG-----ATCTATTTATTCCTACCATTTGTTAAAT----------TTAGAAATCACCACCGAAAATTTG------------------------ATTCTG----ATACCAGA-------GTTCTAGCCAAGCATGCGGTGTGCTAGAATTGGTTGACATGTTATTACG---CTGGGCATTG-AT---AAG--TATTTCA---AAA-C-CACCGAATT---------AAATA---------A---AA-----------TGGTTAATGTATG-ATTTTTT--TTCTTTATAACT-GCAGATC--TTGAACCAGTGGAGAATATGAA-CCAGACACATGCTGTA-AA-----TAGTGTGGTT--TCACCGTGTTTTGGACATAAATGTTAC
gi|12 : aagcGGACTCA-CACCGCTA---TTAT---CTCCCC-TGAGTACTCCGG-----------A-GATGAAGGAGG---TAGAGATTAAACTTTAGTTCTTTTTTT-TCTTC--T--CT---TTT----CAGGGCTTTGTA--TTGCAGTGATGTA-TTTATCCTACCATGTGGTAAACGGTTAGTATTAAAGAAATCGCCATTTGAAATTGGATG------CCAGATTTCT
gi|12 : aGAAATTGGATGCCAGA--T--TTCTTC-AAA-ATCATTGAATT--A-----AAAAAACACAACACAA---AACAA------CCTGGACAAGGTATA-CTTTGTT--CCCTTCATAACT-TCAGATA--TTGAACAATTGAAGAATTTGAACCCAGACACATGTTGCAGA--------TTTTTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTGTGGGAAATGTAA--TAGTAGTGTGAGACGtcaaaatcattgaattaaaaaaacacaacacaaaacaacctggacaaggtatactttgttcccttcataacttcagatattgaacaattgaagaatttgaacccagacacatgttgcagatttttttttcactgtgttttggacataaatgttacaatggagccctgtgggaaatgtaatagtagtgtgagacga
gi|13 : aggactcacaccgctattatctcccctgagtactccggagatgaaggaggtagagattaaactttagttcttttttttcttctcttttcagggctttgtattgcagtgatgtatttatcctaccatgtggtaaacggttagtattaaagaaatcgccatttGGAATCA-CACAACTA---TTAT---CTTCTTATTA-TATCCCGGACC----------GATAAAGAACG---TAGTAGTTAAATTATAGTTC-GAATTT-CCT-CTTT--TTAAAT--------GGACTTTAAA--ATGCAGCAATTAATTT-------------GTTAAATGATAAATATTTTAGAAATCACCACAGAATATTTGATGCTGATACCAGATTTCTAGAC-------------TT---AAT----GGGTCGAATC--GCAT-CT-TGGGA--GGAT-TGTTTACCTATCATAACT---CTTGAAATTG-AC---AGG--T--GTCA-A-AAA-A-C----CATT--T---------AG---------A---AATAA------CGTGATCAAGGTGTG-ATTT------------TAATCAGTGAACCAGTT-AACCAGTGAGGAATTTGAACCAAGTCGCATGTTGa
gi|14 : -GATGAAGGAGT---TAGAAGTAAAACTTT-----------T-TCTTCTTT--TT---T------CAGGATTTCGTA--TTGCAGT---CT-TTTTTTCTTAC----------ATGGTCAGTATTTTAGGAATTACAACT-AAAATGTGATGCTGATATCAGACTTCTAGGCAATTCTGTGTCATTTTAGATTTGATCGTTCGGAAT--GAAT-CG-TGGGC--AAAG-ATTTGACATATTATTACCAA-CTGGAAATTG-AT---AAA--T--CTCG-C-AAA-ACCAATGAA-T--T-----AAATAA---------A---GACAA------ATTGG
gi|15 : GGACTCA-CTGCAGTT---TTAT---CTTCTT-TGAATACCTCAGATCT-----ACA-GATAAAGGAAT---AAGAAGCAAAACTACAGTTT-GCTTTT-TCT------------------------CTTTATA--TTGCAGCGATTTGTTTATTTCTGCCATGTGTTAAATGGCCAGTTTTTCAGAAATCACAATTGCACATTTGAAGCTGATAACAGGTTTCTAGCTTATTCTGTGTCAATTTAAA
gi|16 : aGGACTCG-CACCACTA---TTAT---CTCGCT-TGAATTCTCCGGACTT-----ACA-GATAAAT-AGG---TAAAAATTAAACTTTAAATC-TCTTTT-TCTTCTTT--TG---TTT----CAGGGCTTTCCA--TTGCAGCGATTTATTTTTTCCTACCATGCGTTAACT-GTCAGTATTTTAGAAATCATCACTGACAATTTGATGTTGATACCAGATTTCTAGGTAATTc
gi|17 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|18 : aT--T-----AAAAAA---------A----------------TGGTCAAGGTAAG-CTGTTTT--TCCTTTATAATT-GCAGATC--TTGAAACAGTGAACAATTTGAGCCCAGACACATGCTGCA-AATGTTTT-TTTTTTTT--TCACTGTGTTTTGGACATGAATG----AATTGAGCCCTATGGGAAATGTAATTTAGTGATGTGAGACGTaatatgactggatggggaaacatactatgtatatgtgacatggtacgctaggcttgcagtgctaagaatatttcctcaagtagaacccgtcgcgatatgactgaagcgttgttgaaaacgacgctaaataaaaaatgtttctaataactgtgac
gi|19 : aaGTTCGAACC--GCAT-TG-TGGGC--GAAT-AGTTAACATATTATTACT---TTGGAAATTG--T---TGG--T--ATCA-CAAAA-G-CATTGAATT--T-----AAAAAT---------A---AA-----------TGGTCAAGGTATG-C-TTTTT--TCGTTTATAATA-GCATTTC--TTGGAt
gi|19 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACtacaatcggtacctatgggaaatgtaatagtggtgtgagac
gi|2 : gttcgaaccgcattgtgggcgaatagttaacatattattactttggaaattgttggtatcacaaaagcattgaatttaaaaataaatggtcaaggtatgcttttttcgtttataatagcatttcttggaGGACTCA-CACCACTA---TTAT---CTCCCT-TAAGTACTCAAGCCCT-----ACA-GATGAAAGAGG---TAGATATAAAACTTCAGTTC-TATTTT-TCTTCTTT--TT---T------CAGTGCTTTGAA--CTGCAGTGATTTATTTTTTTCTAGCACAAGTTAAATATTCAGTATTTTAGAAATCACCACTCAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--ACAT-CT-TTGGC--AAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-TAAAA-G-CATTGAATTTGT-----AAGAAA---------A---AAC-A------CCTGGTCAAGGTCTG-CATTTTT--TCCTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATTCTGCAGAT-----T-TTGTTTTT--TCACTGTGTTTTGGATATGAATGTTACAATGGAGCCCTATGGGAAATGTAA--CAGTGGTGTGAGAAGT
gi|20 : aGGACTCA-ATATACTAGGTTTGT---CT---T-TGAATACTTCGGTTCTGCTACACATGATGGAGGAAGAAGCAGAAATA
gi|21 : cttttatttgcaT---CGCCAT-TGATCACGCCG-ACCT-----ACA-GATGATGAATT---TAAAAGTAGAAATATAGT-----TTTT-TTTTCTTT--TT---CAT----CA---CTTTATT--TTtagtgttttt
gi|22 : atggGACTCA-CATCACTA---TTAT---CTGCCC-TGAATAC-----------------------------------AAATAAAAC-TTAATTA-TTTTTTGTTTTGTTT--TT---GTT------GGGCTTc
gi|24 : acagacGGACTCA-TGCCACTG---GTAT---CTCCCT-TGAGAACTCCGGACCT-----ACA-GATGAAAGAAG---GAGAAATAAAACTT
gi|25 : ATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|25 : TATGGGAAATATAA--TAGTTGTGTGAGACGTaacaatatgtatgggaaatataatagttgtgtgagacgt
gi|26 : atgggaaatgtaatagtggtgtgagacgaacaatatgACTT---TTAT---CTCCCT-TTAAAAATCAG----C-----ACA-AATGAAGGAGG---TATTAGTAACAATATAGTTC-
gi|27 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCC-----ACA-GATGAAGGAGG---TAGc
gi|28 : A---TTATATTCTCCCT-TGAGTACT-------------ACA-GATGAAGGAGG---TA
gi|29 : GGACTCA-CACCACTA---TTAT---CTCCCT-ta
gi|3 : ttcaGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GGTGAAGGAGG---TAGAAATAAAACTTTAGTTC-TGTTTT-TCTTTTTT--TT---TTT----CAGCTCTTTGAA--CTGCAATGTTTTGTTTTTTGCTGGCATGAGTTAGATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACG--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATA-CTTTTTT--TTCTTTTTAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACTTGCTGCAGAA-----T-TTCATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|4 : GGACTCA-CACCAATA---TTAT---CTCCCT-TGAGTACTCCGGA--------------TGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCGTT--TT-----T----CAGGGCTTTGTA--TTGCAATGTTGTTTTTTTTGCTAGCATGAGTTAAATGGTCCGTATTTTAGAAATCACCACTGAAAATATGATGCTGATACCAGCGTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGCTCGAACC--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAAGG-CATTGCATT--T-----TTAAAA---------A---AA-AA------CCTGGTTAAGGTATA-CTTTTTT--T-CTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTAATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCTTATGGGAAATGTAA--TAGTGGTGTGAGCCGT
gi|5 : GGACTCA-CACCACAA---TTAT---CTCCCT-TGAGTACTCCAGACCT-----ACA-GATGAAGGAGG---TAAAAATAAAACTTTTGTTC-TCTTTT-TCTCCTTT--TT---TT------AGGTCCTTCTA--CTGCAGTGATTTATATTTTCCTGGCATTAGTTAAATGGTCAGTA-----GAAATCACCACTGAAAAATTTATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATGGTTGGTTCAAACC--ACAT-CG-TGGGC--AAAT-AGTTGACATATTATTACT---CTGGAA-CTG-AT---AGG--T--CTCA-T-AAAAG-CATTGAATT--T-----AAAAAA---------A---AA--A------CCTGGTCAATGTATG-CTTTTTT---CCTTTATAATTAGAAAATC--TTGATCCAGTGATGAATTTGAGCCCAAACACATGCTGCAGAT-----A-TTGTTTTT--TCACTATGTTTTGGACATAAATGTTACAAAGGAGCCCTATGAGAAATGTAA--TAGTGGTGTGAGAC
gi|6 : GGACTCAACATAACTT---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-TATCAAGGCGG---TAGAAATTAAACTTTAGTTC-TCTTTT-TCTTCTTT--T-----TT----CAGGGTTTTGTA--CTGCAGTGATTTATTTTTTACTACCATGTGTTAAATGGTCAGTATTGTAGAAATCACCTATGACAATTTGATGCTGATAC------------CAATTCTGTGTCATTTTAGAACTGTTTGTTCGAACC--ACAT-CG-TGAGC--GAAT-AGTTGACACATTATT-TT---CCGGAAATTG-AT---AGGTAT--CTCA---AAA-C-CATTCAATT--A-----AAATAA---------A---CCCAA------CCTGGTCATGACATG-CTTTTTTCCCCCTTAATAATT-GCAGATC--TTGAACCAGTGAAGAATTTGAGCCTAGACACATGCTGCAG-A-----T-TTTGTTTT--TCACTGTGTTTTGGACATAAAAGTTACAATGAAGCCCTATGGTAAATGTAA--AAGTGGTGTGAGACG
gi|7 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTTCAGACCT-----ACA-GATGAAGGAGG---TAGAAATACAACTTTAGTTC-TCTTCT-TTTTCTTT--TT---T-------AGGGCTTTGTA--CTGTAATGGTT-GTTTTTTTTTGC--TGGCTT---TAGTTA-TA----ATAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATGCTGTGTTATTTCAGAATTGTTGGTTCG-------CAT-CT-AGGGC--GATT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AAG--T--CTCA-C-AAAAG-CATTGAGTT--T-----AGAAAA---------A---AACAAAAACAACCCGGCCAAAGTATG-CTTTTTT--CCCTTTATAATT-GCATATC--TTGAACTAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTGATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCTCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|8 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGAC---------A-GATGAAGGAGG---TAGAAATAAAACTTTAATTC-TCTTTT-TCTTCTTT--TT---T------CAGGGCTTTGTA--CTTCAATGTTTTGTTTTTTGCTAGCATGAGTTAAATGGTCAGTATTTTAAAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGAACAATTCTGT--CATTTCAGAATTGTTGATTCGAACC--GCAT-CT-AGGGC--AAAT-AGCTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCG-C-AAAAG-CATTGATTT--TTTTAAAAAAAA---------A---AAAAA------CCTAGTCAAGGTATA-CTATTTT--TCTTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTAATTTT--TCGCTCGGTTTTGGACATA--------AATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGA
gi|9 : CTCG-CACCACTA---TTGT---CTCCCT-TGAATACTCTGGACCT-----ACA-GATGAAGGAGG---TAGTAGTAAAAATACAGTTC-CCTTTT-----CTTC--TT---TTT----CAAGACTTTATA--TTCCATTGATTTATTTATTCTTACCATGTGTTAAGTGGTCAATATTATAGAAACCATCACTAAAAATTTAATGCCAATACCACCTTTCAAGCAAATTCTGTGTCATTTTAGACTTCATGGGTCGAATC--ATAT-T---------------GTTGATATATTATTACT---CTGGAAACTG-AC---AGA--C--GTCA-C-AAA-ACCATTGAATT--T-----AAAAAA---------T---AAAAA------CCTGGTCAAAGTATGACTTTTTT--TGC-GTATAATT-GCAAATC--TTGAAGCAGTGAAGACTTTGAGCCAATACGCACGCTGCTGAT-----T-TTAATTTT--TCACGGTGTTGTTGATAAAAGTTTTATAATGGAGCCCTATGGGAAATTTAA--TAATGGCGTGAGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AATATCCAGACTGCATATAAAGGTAATAGGAAGCAAAACATTTTGATTTTTTTCTGTTTGCACAGATTT
Alignments
lowQualScore : 1111111111 111 222 11111111 111111111 111111111
lowQualScore : 2 333 333 1 99999999 1 333 2 2 33 8888888888 33 0 2 2 1 33 2 888 33 2 888 2 444 33 444 222 111 00000000 000000000 444 000000000 2 33 5 1 33 88888888 3 22 44 0 33
lowQualScore : . ... ... . ........ . ... . . .. .......... .. . . . . .. . ... .. . ... . ... .. ... ... ... ........ ......... ... ......... . .. . . .. ........ . .. .. . ..
lowQualScore : 0 222 000 7 77777777 7 000 1 2 11 4444444444 22 8 8 8 4 99 9 444 99 9 999 7 777 77 111 222 777 22222222 000000000 444 999999999 7 77 3 0 77 55555555 1 00 22 8 44
consensus : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
Reference ( family-4541 ) : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|1 : GGACTCA-CACCACTA---TTAT---CTCCCT-TTGGTACTCAGGAC---------A-GATGAAAGCGG---TAGAAATTAAACTTTAATTC-TCTTTT-CCTTCTTT--TT---TTTTCTTCAGGGCTTTGTAAATTGCAGTGATTTATATTTTCCTACCATGTGTTTAACGGTCATTATTTTAGAAATCACGACTGAAAATTTGATGCTGATACCAGATTTCTAGGCAATTCTGTATCATTTTAGAATTGTTGGTTCGAACC--GCAT-CA-TGGTC--GAAT-AGTTGACATA--ATCTCTTTCCTGCAAATTG-AT---AGT--T--ATCA-CGAAA-C-CATTGAATT--A-----CAAAGA---------A---AACAA------CCTGGTCAGCGTTTG-CTGTTTT--TCTTTTATAATC-GCAGATC--TTGAACCAGTGAAAATTTTGAGCCCAGACACATTCTGCA-AA-----T-TTTGTTTTTGTCACTGTGTTTTGG----AAATGTTACAATTGAGCCATATGGGAAATGTAC--TAGTGGTATGAGACGT
gi|10 : aACTCA-TACCACTA---TTAT---CTCCCT-TGAGTACTTTGGACCT---------GATGATTGGGG---TAGACATAAAACTTAAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGTAGTGATTTATTTTTTCCTACTATGTGTTCAATGGTTAGTATTTTAGAAATTACCGTTGAAAATTTGATGCTGATACAAGATTTCTGGGCAATTTTGTGCCATTTCAGAATCGTTGGTTCGAACC--GCAT-CG-TGGAC--G------------TATTATTACT---CTGGAAATTT-GT---A--------TCA-T-AAA-ACCATTGAATT--A-----AAAAGA---------AATGAACAA------CCTGGTCAAGGTATG-CTTTTTT--CCCTTTATAATT-GCATATT--TTGAACCAGTGAAGAATTTGTGCCCAGACACATGCTGCAG-A-----T-TTTTTTT----------------GACATAGATGTTACAATGAAGTCCTGTGGGAAATGTAA--TAGTGATATGAGACGT
gi|11 : ACTTA-CTACAATA---TTAT---CTCCCT-TGAATA----GAGTC----------GA--AAGGAGA---TAGGAGTAAAACTATAGCTC-CCTTTT-TCTCCTTTGTTT---TTC----CAAGGTTTTATA--TTG-----ATCTATTTATTCCTACCATTTGTTAAAT----------TTAGAAATCACCACCGAAAATTTG------------------------ATTCTG----ATACCAGA-------GTTCTAGCCAAGCATGCGGTGTGCTAGAATTGGTTGACATGTTATTACG---CTGGGCATTG-AT---AAG--TATTTCA---AAA-C-CACCGAATT---------AAATA---------A---AA-----------TGGTTAATGTATG-ATTTTTT--TTCTTTATAACT-GCAGATC--TTGAACCAGTGGAGAATATGAA-CCAGACACATGCTGTA-AA-----TAGTGTGGTT--TCACCGTGTTTTGGACATAAATGTTAC
gi|12 : aagcGGACTCA-CACCGCTA---TTAT---CTCCCC-TGAGTACTCCGG-----------A-GATGAAGGAGG---TAGAGATTAAACTTTAGTTCTTTTTTT-TCTTC--T--CT---TTT----CAGGGCTTTGTA--TTGCAGTGATGTA-TTTATCCTACCATGTGGTAAACGGTTAGTATTAAAGAAATCGCCATTTGAAATTGGATG------CCAGATTTCT
gi|12 : aGAAATTGGATGCCAGA--T--TTCTTC-AAA-ATCATTGAATT--A-----AAAAAACACAACACAA---AACAA------CCTGGACAAGGTATA-CTTTGTT--CCCTTCATAACT-TCAGATA--TTGAACAATTGAAGAATTTGAACCCAGACACATGTTGCAGA--------TTTTTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTGTGGGAAATGTAA--TAGTAGTGTGAGACGtcaaaatcattgaattaaaaaaacacaacacaaaacaacctggacaaggtatactttgttcccttcataacttcagatattgaacaattgaagaatttgaacccagacacatgttgcagatttttttttcactgtgttttggacataaatgttacaatggagccctgtgggaaatgtaatagtagtgtgagacga
gi|13 : aggactcacaccgctattatctcccctgagtactccggagatgaaggaggtagagattaaactttagttcttttttttcttctcttttcagggctttgtattgcagtgatgtatttatcctaccatgtggtaaacggttagtattaaagaaatcgccatttGGAATCA-CACAACTA---TTAT---CTTCTTATTA-TATCCCGGACC----------GATAAAGAACG---TAGTAGTTAAATTATAGTTC-GAATTT-CCT-CTTT--TTAAAT--------GGACTTTAAA--ATGCAGCAATTAATTT-------------GTTAAATGATAAATATTTTAGAAATCACCACAGAATATTTGATGCTGATACCAGATTTCTAGAC-------------TT---AAT----GGGTCGAATC--GCAT-CT-TGGGA--GGAT-TGTTTACCTATCATAACT---CTTGAAATTG-AC---AGG--T--GTCA-A-AAA-A-C----CATT--T---------AG---------A---AATAA------CGTGATCAAGGTGTG-ATTT------------TAATCAGTGAACCAGTT-AACCAGTGAGGAATTTGAACCAAGTCGCATGTTGa
gi|14 : -GATGAAGGAGT---TAGAAGTAAAACTTT-----------T-TCTTCTTT--TT---T------CAGGATTTCGTA--TTGCAGT---CT-TTTTTTCTTAC----------ATGGTCAGTATTTTAGGAATTACAACT-AAAATGTGATGCTGATATCAGACTTCTAGGCAATTCTGTGTCATTTTAGATTTGATCGTTCGGAAT--GAAT-CG-TGGGC--AAAG-ATTTGACATATTATTACCAA-CTGGAAATTG-AT---AAA--T--CTCG-C-AAA-ACCAATGAA-T--T-----AAATAA---------A---GACAA------ATTGG
gi|15 : GGACTCA-CTGCAGTT---TTAT---CTTCTT-TGAATACCTCAGATCT-----ACA-GATAAAGGAAT---AAGAAGCAAAACTACAGTTT-GCTTTT-TCT------------------------CTTTATA--TTGCAGCGATTTGTTTATTTCTGCCATGTGTTAAATGGCCAGTTTTTCAGAAATCACAATTGCACATTTGAAGCTGATAACAGGTTTCTAGCTTATTCTGTGTCAATTTAAA
gi|16 : aGGACTCG-CACCACTA---TTAT---CTCGCT-TGAATTCTCCGGACTT-----ACA-GATAAAT-AGG---TAAAAATTAAACTTTAAATC-TCTTTT-TCTTCTTT--TG---TTT----CAGGGCTTTCCA--TTGCAGCGATTTATTTTTTCCTACCATGCGTTAACT-GTCAGTATTTTAGAAATCATCACTGACAATTTGATGTTGATACCAGATTTCTAGGTAATTc
gi|17 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|18 : aT--T-----AAAAAA---------A----------------TGGTCAAGGTAAG-CTGTTTT--TCCTTTATAATT-GCAGATC--TTGAAACAGTGAACAATTTGAGCCCAGACACATGCTGCA-AATGTTTT-TTTTTTTT--TCACTGTGTTTTGGACATGAATG----AATTGAGCCCTATGGGAAATGTAATTTAGTGATGTGAGACGTaatatgactggatggggaaacatactatgtatatgtgacatggtacgctaggcttgcagtgctaagaatatttcctcaagtagaacccgtcgcgatatgactgaagcgttgttgaaaacgacgctaaataaaaaatgtttctaataactgtgac
gi|19 : aaGTTCGAACC--GCAT-TG-TGGGC--GAAT-AGTTAACATATTATTACT---TTGGAAATTG--T---TGG--T--ATCA-CAAAA-G-CATTGAATT--T-----AAAAAT---------A---AA-----------TGGTCAAGGTATG-C-TTTTT--TCGTTTATAATA-GCATTTC--TTGGAt
gi|19 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACtacaatcggtacctatgggaaatgtaatagtggtgtgagac
gi|2 : gttcgaaccgcattgtgggcgaatagttaacatattattactttggaaattgttggtatcacaaaagcattgaatttaaaaataaatggtcaaggtatgcttttttcgtttataatagcatttcttggaGGACTCA-CACCACTA---TTAT---CTCCCT-TAAGTACTCAAGCCCT-----ACA-GATGAAAGAGG---TAGATATAAAACTTCAGTTC-TATTTT-TCTTCTTT--TT---T------CAGTGCTTTGAA--CTGCAGTGATTTATTTTTTTCTAGCACAAGTTAAATATTCAGTATTTTAGAAATCACCACTCAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--ACAT-CT-TTGGC--AAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-TAAAA-G-CATTGAATTTGT-----AAGAAA---------A---AAC-A------CCTGGTCAAGGTCTG-CATTTTT--TCCTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATTCTGCAGAT-----T-TTGTTTTT--TCACTGTGTTTTGGATATGAATGTTACAATGGAGCCCTATGGGAAATGTAA--CAGTGGTGTGAGAAGT
gi|20 : aGGACTCA-ATATACTAGGTTTGT---CT---T-TGAATACTTCGGTTCTGCTACACATGATGGAGGAAGAAGCAGAAATA
gi|21 : cttttatttgcaT---CGCCAT-TGATCACGCCG-ACCT-----ACA-GATGATGAATT---TAAAAGTAGAAATATAGT-----TTTT-TTTTCTTT--TT---CAT----CA---CTTTATT--TTtagtgttttt
gi|22 : atggGACTCA-CATCACTA---TTAT---CTGCCC-TGAATAC-----------------------------------AAATAAAAC-TTAATTA-TTTTTTGTTTTGTTT--TT---GTT------GGGCTTc
gi|24 : acagacGGACTCA-TGCCACTG---GTAT---CTCCCT-TGAGAACTCCGGACCT-----ACA-GATGAAAGAAG---GAGAAATAAAACTT
gi|25 : ATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|25 : TATGGGAAATATAA--TAGTTGTGTGAGACGTaacaatatgtatgggaaatataatagttgtgtgagacgt
gi|26 : atgggaaatgtaatagtggtgtgagacgaacaatatgACTT---TTAT---CTCCCT-TTAAAAATCAG----C-----ACA-AATGAAGGAGG---TATTAGTAACAATATAGTTC-
gi|27 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCC-----ACA-GATGAAGGAGG---TAGc
gi|28 : A---TTATATTCTCCCT-TGAGTACT-------------ACA-GATGAAGGAGG---TA
gi|29 : GGACTCA-CACCACTA---TTAT---CTCCCT-ta
gi|3 : ttcaGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GGTGAAGGAGG---TAGAAATAAAACTTTAGTTC-TGTTTT-TCTTTTTT--TT---TTT----CAGCTCTTTGAA--CTGCAATGTTTTGTTTTTTGCTGGCATGAGTTAGATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACG--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATA-CTTTTTT--TTCTTTTTAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACTTGCTGCAGAA-----T-TTCATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|4 : GGACTCA-CACCAATA---TTAT---CTCCCT-TGAGTACTCCGGA--------------TGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCGTT--TT-----T----CAGGGCTTTGTA--TTGCAATGTTGTTTTTTTTGCTAGCATGAGTTAAATGGTCCGTATTTTAGAAATCACCACTGAAAATATGATGCTGATACCAGCGTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGCTCGAACC--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAAGG-CATTGCATT--T-----TTAAAA---------A---AA-AA------CCTGGTTAAGGTATA-CTTTTTT--T-CTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTAATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCTTATGGGAAATGTAA--TAGTGGTGTGAGCCGT
gi|5 : GGACTCA-CACCACAA---TTAT---CTCCCT-TGAGTACTCCAGACCT-----ACA-GATGAAGGAGG---TAAAAATAAAACTTTTGTTC-TCTTTT-TCTCCTTT--TT---TT------AGGTCCTTCTA--CTGCAGTGATTTATATTTTCCTGGCATTAGTTAAATGGTCAGTA-----GAAATCACCACTGAAAAATTTATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATGGTTGGTTCAAACC--ACAT-CG-TGGGC--AAAT-AGTTGACATATTATTACT---CTGGAA-CTG-AT---AGG--T--CTCA-T-AAAAG-CATTGAATT--T-----AAAAAA---------A---AA--A------CCTGGTCAATGTATG-CTTTTTT---CCTTTATAATTAGAAAATC--TTGATCCAGTGATGAATTTGAGCCCAAACACATGCTGCAGAT-----A-TTGTTTTT--TCACTATGTTTTGGACATAAATGTTACAAAGGAGCCCTATGAGAAATGTAA--TAGTGGTGTGAGAC
gi|6 : GGACTCAACATAACTT---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-TATCAAGGCGG---TAGAAATTAAACTTTAGTTC-TCTTTT-TCTTCTTT--T-----TT----CAGGGTTTTGTA--CTGCAGTGATTTATTTTTTACTACCATGTGTTAAATGGTCAGTATTGTAGAAATCACCTATGACAATTTGATGCTGATAC------------CAATTCTGTGTCATTTTAGAACTGTTTGTTCGAACC--ACAT-CG-TGAGC--GAAT-AGTTGACACATTATT-TT---CCGGAAATTG-AT---AGGTAT--CTCA---AAA-C-CATTCAATT--A-----AAATAA---------A---CCCAA------CCTGGTCATGACATG-CTTTTTTCCCCCTTAATAATT-GCAGATC--TTGAACCAGTGAAGAATTTGAGCCTAGACACATGCTGCAG-A-----T-TTTGTTTT--TCACTGTGTTTTGGACATAAAAGTTACAATGAAGCCCTATGGTAAATGTAA--AAGTGGTGTGAGACG
gi|7 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTTCAGACCT-----ACA-GATGAAGGAGG---TAGAAATACAACTTTAGTTC-TCTTCT-TTTTCTTT--TT---T-------AGGGCTTTGTA--CTGTAATGGTT-GTTTTTTTTTGC--TGGCTT---TAGTTA-TA----ATAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATGCTGTGTTATTTCAGAATTGTTGGTTCG-------CAT-CT-AGGGC--GATT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AAG--T--CTCA-C-AAAAG-CATTGAGTT--T-----AGAAAA---------A---AACAAAAACAACCCGGCCAAAGTATG-CTTTTTT--CCCTTTATAATT-GCATATC--TTGAACTAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTGATTTT--TCACTCTGTTTTGGACATAAATGTTACAATGGAGCTCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|8 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGAC---------A-GATGAAGGAGG---TAGAAATAAAACTTTAATTC-TCTTTT-TCTTCTTT--TT---T------CAGGGCTTTGTA--CTTCAATGTTTTGTTTTTTGCTAGCATGAGTTAAATGGTCAGTATTTTAAAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGAACAATTCTGT--CATTTCAGAATTGTTGATTCGAACC--GCAT-CT-AGGGC--AAAT-AGCTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCG-C-AAAAG-CATTGATTT--TTTTAAAAAAAA---------A---AAAAA------CCTAGTCAAGGTATA-CTATTTT--TCTTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTAATTTT--TCGCTCGGTTTTGGACATA--------AATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGA
gi|9 : CTCG-CACCACTA---TTGT---CTCCCT-TGAATACTCTGGACCT-----ACA-GATGAAGGAGG---TAGTAGTAAAAATACAGTTC-CCTTTT-----CTTC--TT---TTT----CAAGACTTTATA--TTCCATTGATTTATTTATTCTTACCATGTGTTAAGTGGTCAATATTATAGAAACCATCACTAAAAATTTAATGCCAATACCACCTTTCAAGCAAATTCTGTGTCATTTTAGACTTCATGGGTCGAATC--ATAT-T---------------GTTGATATATTATTACT---CTGGAAACTG-AC---AGA--C--GTCA-C-AAA-ACCATTGAATT--T-----AAAAAA---------T---AAAAA------CCTGGTCAAAGTATGACTTTTTT--TGC-GTATAATT-GCAAATC--TTGAAGCAGTGAAGACTTTGAGCCAATACGCACGCTGCTGAT-----T-TTAATTTT--TCACGGTGTTGTTGATAAAAGTTTTATAATGGAGCCCTATGGGAAATTTAA--TAATGGCGTGAGAC
blockSeqs : A GGT ATT A CTGCTACA T AAG T G GT AAAT . T A G AA G GGT TA T AA G GCC TA ATT TC AC TTTTAA CACAACACA ATG CAAAAACAA A CC A T AG AATGTTT A TT . TT
blockSeqs : . . . . CTA . . . . . TTT . T A A . . GT . . . . . . T CA AT TGT . . CAA . . A G . GAT . GT . .
blockSeqs : . . . . TTA . . . . . TTC . T A G . . TT . . . . . . G TA AC A . . CAA . . . G . GAA . TT . .
blockSeqs : . . . . CTA . . . . . TTT . T A C . . GT . . . . . . C T GG A . . TAA . . . A . GAA . TT . .
blockSeqs : . . . . CTA . . . . . TTT . C G G . . GT . . . . . . A A AG T . . CAA . . . G . GAT . GT . .
blockSeqs : . . . . CTA . . . . . CAT . A A A . . TT . . . . . . C C AG T . . CAA . . . T . GAA . CA . .
blockSeqs : . . . . CCA . . . . . GTT . A C A . . TA . . . . . . C C AG T . . CAA . . . T . GAA . AA . .
blockSeqs : . . . . CTA . . . . . TTT . A C A . . TA . . . . . . C C AC T . . AAA . . . T . GAT . GT . .
blockSeqs : . . . . CTA . . . . . TTT . A C A . . GT . . . . . . C T C T . . AAA . . . T . GA . TG . .
blockSeqs : . . . . CTA . . . . . TT . T C A . . GT . . . . . . C C A T . . CA . . . A . AA . GA . .
blockSeqs : . . . . CTA . . . . . TT . G C A . . TA . . . . . . C C G T . . AA . . . G . GA . AA . .
blockSeqs : . . . . CTA . . . . . T . A C C . . TA . . . . . . C C G A . . A . . . T . GA . AA . .
blockSeqs : . . . . CT . . . . . T . T C . . . . . . . . . . G . G T . . . . . . T . .
blockSeqs : . . . . CA . . . . . T . . . . . . . . . C T . . . . . . A . .
blockSeqs : . . . . C . . . . . T . . . . . . . .
blockSeqs : . . . . C . . . . . T .
blockSeqs : . . . . A . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons : CTA***** TT******** ** *** C** AN* GAN***** **
originalCons : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TT---TTT----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCA-C-AAA-G-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAA-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
finalCons : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCTA-----CA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT--TTTT--------CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGG--T--CTCAC--AAAAN-CATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGAN-----T-TTNNTTTT--TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AATATCCAGACTGCATATAAAGGTAATAGGAAGCAAAACATTTTGATTTTTTTCTGTTTGCACAGATTT
Alignments
lowQualScore : 22222222222 11111111 111111111 111111111 11111
lowQualScore : 2 333 333 1 999999999 1 333 2 2 333 4 22222222222 33 0 2 2 1 33 2 888 33 2 888 2 444 2 2 1 11111111 000000000 444 000000000 2 33 5 1 33 00000 66 3 0 33
lowQualScore : . ... ... . ......... . ... . . ... . ........... .. . . . . .. . ... .. . ... . ... . . . ........ ......... ... ......... . .. . . .. ..... .. . . ..
lowQualScore : 0 222 000 7 999999999 7 000 1 2 999 4 88888888888 22 8 8 8 4 99 9 444 99 9 999 7 777 7 7 0 88888888 000000000 444 999999999 7 77 3 0 77 55555 11 1 8 44
consensus : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT---T-T---T-T-----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCA-CAAAANCATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA----TTTTGNTTTT-TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
Reference ( family-4541 ) : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GATGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCTTT---T-T---T-T-----CAGGGCTTTGTA--TTGCAGTGATTTATTTTTTCCTACCATGNGTTAAATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGNTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--GCAT-CG-TGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCA-CAAAANCATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATG-CTTTTTT--TCCTTTATAATT-GCANATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA----NTTTNNTTTT-TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|1 : GGACTCA-CACCACTA---TTAT---CTCCCT-TTGGTACTCAGGAC---------A-GATGAAAGCGG---TAGAAATTAAACTTTAATTC-TCTTTT-CCTTCTTT---T-T---T-TTTCTTCAGGGCTTTGTAAATTGCAGTGATTTATATTTTCCTACCATGTGTTTAACGGTCATTATTTTAGAAATCACGACTGAAAATTTGATGCTGATACCAGATTTCTAGGCAATTCTGTATCATTTTAGAATTGTTGGTTCGAACC--GCAT-CA-TGGTC--GAAT-AGTTGACATA--ATCTCTTTCCTGCAAATTG-AT---AGTTATCA-CGAAACCATTGAATT--A-----CAAAGA---------A---AACAA------CCTGGTCAGCGTTTG-CTGTTTT--TCTTTTATAATC-GCAGATC--TTGAACCAGTGAAAATTTTGAGCCCAGACACATTCTGCAAA----TTTTGTTTTTGTCACTGTGTTTTGG----AAATGTTACAATTGAGCCATATGGGAAATGTAC--TAGTGGTATGAGACGT
gi|10 : aACTCA-TACCACTA---TTAT---CTCCCT-TGAGTACTTTGGACCT---------GATGATTGGGG---TAGACATAAAACTTAAGTTC-TCTTTT-TCTTCTTT---TTT---T-T-----CAGGGCTTTGTA--TTGTAGTGATTTATTTTTTCCTACTATGTGTTCAATGGTTAGTATTTTAGAAATTACCGTTGAAAATTTGATGCTGATACAAGATTTCTGGGCAATTTTGTGCCATTTCAGAATCGTTGGTTCGAACC--GCAT-CG-TGGAC--G------------TATTATTACT---CTGGAAATTT-GT---A----TCA-TAAAACCATTGAATT--A-----AAAAGA---------AATGAACAA------CCTGGTCAAGGTATG-CTTTTTT--CCCTTTATAATT-GCATATT--TTGAACCAGTGAAGAATTTGTGCCCAGACACATGCTGCAGA----TTTTTTTT----------------GACATAGATGTTACAATGAAGTCCTGTGGGAAATGTAA--TAGTGATATGAGACGT
gi|11 : ACTTA-CTACAATA---TTAT---CTCCCT-TGAATA----GAGTC----------GA--AAGGAGA---TAGGAGTAAAACTATAGCTC-CCTTTT-TCTCCTTTGTTT-T---T-C-----CAAGGTTTTATA--TTG-----ATCTATTTATTCCTACCATTTGTTAAAT----------TTAGAAATCACCACCGAAAATTTG------------------------ATTCTG----ATACCAGA-------GTTCTAGCCAAGCATGCGGTGTGCTAGAATTGGTTGACATGTTATTACG---CTGGGCATTG-AT---AAGTATTT-CAAAACCACCGAATT---------AAATA---------A---AA-----------TGGTTAATGTATG-ATTTTTT--TTCTTTATAACT-GCAGATC--TTGAACCAGTGGAGAATATGAA-CCAGACACATGCTGTAAA----TAGTGTGGTT-TCACCGTGTTTTGGACATAAATGTTAC
gi|12 : aagcGGACTCA-CACCGCTA---TTAT---CTCCCC-TGAGTACTCCGGA------------GATGAAGGAGG---TAGAGATTAAACTTTAGTTCTTTTTTT-TCTTC-TC---T-T---T-T-----CAGGGCTTTGTA--TTGCAGTGATGTA-TTTATCCTACCATGTGGTAAACGGTTAGTATTAAAGAAATCGCCATTTGAAATTGGATG------CCAGATTTCT
gi|12 : aGAAATTGGATGCCAGATTTCTTCAAAATCATTGAATT--A-----AAAAAACACAACACAA---AACAA------CCTGGACAAGGTATA-CTTTGTT--CCCTTCATAACT-TCAGATA--TTGAACAATTGAAGAATTTGAACCCAGACACATGTTGCAGA----TTTT--TTTT-TCACTGTGTTTTGGACATAAATGTTACAATGGAGCCCTGTGGGAAATGTAA--TAGTAGTGTGAGACGtcaaaatcattgaattaaaaaaacacaacacaaaacaacctggacaaggtatactttgttcccttcataacttcagatattgaacaattgaagaatttgaacccagacacatgttgcagatttttttttcactgtgttttggacataaatgttacaatggagccctgtgggaaatgtaatagtagtgtgagacga
gi|13 : aggactcacaccgctattatctcccctgagtactccggagatgaaggaggtagagattaaactttagttcttttttttcttctcttttcagggctttgtattgcagtgatgtatttatcctaccatgtggtaaacggttagtattaaagaaatcgccatttGGAATCA-CACAACTA---TTAT---CTTCTTATTA-TATCCCGGACC----------GATAAAGAACG---TAGTAGTTAAATTATAGTTC-GAATTT-CCT-CTTT---T-TAAAT---------GGACTTTAAA--ATGCAGCAATTAATTT-------------GTTAAATGATAAATATTTTAGAAATCACCACAGAATATTTGATGCTGATACCAGATTTCTAGAC-------------TT---AAT----GGGTCGAATC--GCAT-CT-TGGGA--GGAT-TGTTTACCTATCATAACT---CTTGAAATTG-AC---AGGTGTCA-AAAAACCATT---T-------------AG---------A---AATAA------CGTGATCAAGGTGTG-ATTT------------TAATCAGTGAACCAGTT-AACCAGTGAGGAATTTGAACCAAGTCGCATGTTGa
gi|14 : -GATGAAGGAGT---TAGAAGTAAAACTTT-----------T-TCTTCTTT---T-T---T-------CAGGATTTCGTA--TTGCAGT---CT-TTTTTTCTTAC----------ATGGTCAGTATTTTAGGAATTACAACT-AAAATGTGATGCTGATATCAGACTTCTAGGCAATTCTGTGTCATTTTAGATTTGATCGTTCGGAAT--GAAT-CG-TGGGC--AAAG-ATTTGACATATTATTACCAA-CTGGAAATTG-AT---AAATCTCG-CAAAACCAATGAA-T--T-----AAATAA---------A---GACAA------ATTGG
gi|15 : GGACTCA-CTGCAGTT---TTAT---CTTCTT-TGAATACCTCAGATCT-----ACA-GATAAAGGAAT---AAGAAGCAAAACTACAGTTT-GCTTTT-TCT---------------------------CTTTATA--TTGCAGCGATTTGTTTATTTCTGCCATGTGTTAAATGGCCAGTTTTTCAGAAATCACAATTGCACATTTGAAGCTGATAACAGGTTTCTAGCTTATTCTGTGTCAATTTAAA
gi|16 : aGGACTCG-CACCACTA---TTAT---CTCGCT-TGAATTCTCCGGACTT-----ACA-GAT-AAATAGG---TAAAAATTAAACTTTAAATC-TCTTTT-TCTTCTTT---TGT---T-T-----CAGGGCTTTCCA--TTGCAGCGATTTATTTTTTCCTACCATGCGTTAACT-GTCAGTATTTTAGAAATCATCACTGACAATTTGATGTTGATACCAGATTTCTAGGTAATTc
gi|17 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|18 : aT--T-----AAAAAA---------A----------------TGGTCAAGGTAAG-CTGTTTT--TCCTTTATAATT-GCAGATC--TTGAAACAGTGAACAATTTGAGCCCAGACACATGCTGCAAATGTTTTTTTTTTTT-TCACTGTGTTTTGGACATGAATG----AATTGAGCCCTATGGGAAATGTAATTTAGTGATGTGAGACGTaatatgactggatggggaaacatactatgtatatgtgacatggtacgctaggcttgcagtgctaagaatatttcctcaagtagaacccgtcgcgatatgactgaagcgttgttgaaaacgacgctaaataaaaaatgtttctaataactgtgac
gi|19 : aaGTTCGAACC--GCAT-TG-TGGGC--GAAT-AGTTAACATATTATTACT---TTGGAAATTG--T---TGGTATCA-CAAAAGCATTGAATT--T-----AAAAAT---------A---AA-----------TGGTCAAGGTATG-C-TTTTT--TCGTTTATAATA-GCATTTC--TTGGAt
gi|19 : TACAATCGGTACCTATGGGAAATGTAA--TAGTGGTGTGAGACtacaatcggtacctatgggaaatgtaatagtggtgtgagac
gi|2 : gttcgaaccgcattgtgggcgaatagttaacatattattactttggaaattgttggtatcacaaaagcattgaatttaaaaataaatggtcaaggtatgcttttttcgtttataatagcatttcttggaGGACTCA-CACCACTA---TTAT---CTCCCT-TAAGTACTCAAGCCCT-----ACA-GATGAAAGAGG---TAGATATAAAACTTCAGTTC-TATTTT-TCTTCTTT---T-T---T-------CAGTGCTTTGAA--CTGCAGTGATTTATTTTTTTCTAGCACAAGTTAAATATTCAGTATTTTAGAAATCACCACTCAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACC--ACAT-CT-TTGGC--AAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCA-TAAAAGCATTGAATTTGT-----AAGAAA---------A---AAC-A------CCTGGTCAAGGTCTG-CATTTTT--TCCTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATTCTGCAGA----TTTTGTTTTT-TCACTGTGTTTTGGATATGAATGTTACAATGGAGCCCTATGGGAAATGTAA--CAGTGGTGTGAGAAGT
gi|20 : aGGACTCA-ATATACTAGGTTTGT---CT---T-TGAATACTTCGGTTCTGCTACACATGATGGAGGAAGAAGCAGAAATA
gi|21 : cttttatttgcaT---CGCCAT-TGATCACGCCG-ACCT-----ACA-GATGATGAATT---TAAAAGTAGAAATATAGT-----TTTT-TTTTCTTT---T-T---CAT-----CA---CTTTATT--TTtagtgttttt
gi|22 : atggGACTCA-CATCACTA---TTAT---CTGCCC-TGAATAC-----------------------------------AAATAAAAC-TTAATTA-TTTTTTGTTTTGTTT---T-TG--T-T-------GGGCTTc
gi|24 : acagacGGACTCA-TGCCACTG---GTAT---CTCCCT-TGAGAACTCCGGACCT-----ACA-GATGAAAGAAG---GAGAAATAAAACTT
gi|25 : ATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|25 : TATGGGAAATATAA--TAGTTGTGTGAGACGTaacaatatgtatgggaaatataatagttgtgtgagacgt
gi|26 : atgggaaatgtaatagtggtgtgagacgaacaatatgACTT---TTAT---CTCCCT-TTAAAAATCAG----C-----ACA-AATGAAGGAGG---TATTAGTAACAATATAGTTC-
gi|27 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCC-----ACA-GATGAAGGAGG---TAGc
gi|28 : A---TTATATTCTCCCT-TGAGTACT-------------ACA-GATGAAGGAGG---TA
gi|29 : GGACTCA-CACCACTA---TTAT---CTCCCT-ta
gi|3 : ttcaGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-GGTGAAGGAGG---TAGAAATAAAACTTTAGTTC-TGTTTT-TCTTTTTT---T-T---T-TT----CAGCTCTTTGAA--CTGCAATGTTTTGTTTTTTGCTGGCATGAGTTAGATGGTCAGTATTTTAGAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGTTCGAACG--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCA-C-AAAGCATTGAATT--T-----AAAAAA---------A---AACAA------CCTGGTCAAGGTATA-CTTTTTT--TTCTTTTTAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACTTGCTGCAGA----ATTTCATTTT-TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGACGT
gi|4 : GGACTCA-CACCAATA---TTAT---CTCCCT-TGAGTACTCCGGA--------------TGAAGGAGG---TAGAAATAAAACTTTAGTTC-TCTTTT-TCTTCGTT---T-T-----T-----CAGGGCTTTGTA--TTGCAATGTTGTTTTTTTTGCTAGCATGAGTTAAATGGTCCGTATTTTAGAAATCACCACTGAAAATATGATGCTGATACCAGCGTTCTGGACAATTCTGTGTCATTTCAGAATTGTTGGCTCGAACC--GCAT-CT-AGGGC--GAAT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCA-CAAAGGCATTGCATT--T-----TTAAAA---------A---AA-AA------CCTGGTTAAGGTATA-CTTTTTT--T-CTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA----ATTTAATTTT-TCACTCTGTTTTGGACATAAATGTTACAATGGAGCCTTATGGGAAATGTAA--TAGTGGTGTGAGCCGT
gi|5 : GGACTCA-CACCACAA---TTAT---CTCCCT-TGAGTACTCCAGACCT-----ACA-GATGAAGGAGG---TAAAAATAAAACTTTTGTTC-TCTTTT-TCTCCTTT---T-T---T-T------AGGTCCTTCTA--CTGCAGTGATTTATATTTTCCTGGCATTAGTTAAATGGTCAGTA-----GAAATCACCACTGAAAAATTTATGCTGATACCAGCTTTCTGGACAATTCTGTGTCATTTCAGAATGGTTGGTTCAAACC--ACAT-CG-TGGGC--AAAT-AGTTGACATATTATTACT---CTGGAA-CTG-AT---AGGTCTCA-TAAAAGCATTGAATT--T-----AAAAAA---------A---AA--A------CCTGGTCAATGTATG-CTTTTTT---CCTTTATAATTAGAAAATC--TTGATCCAGTGATGAATTTGAGCCCAAACACATGCTGCAGA----TATTGTTTTT-TCACTATGTTTTGGACATAAATGTTACAAAGGAGCCCTATGAGAAATGTAA--TAGTGGTGTGAGAC
gi|6 : GGACTCAACATAACTT---TTAT---CTCCCT-TGAGTACTCCGGACCT-----ACA-TATCAAGGCGG---TAGAAATTAAACTTTAGTTC-TCTTTT-TCTTCTTT---T-----T-T-----CAGGGTTTTGTA--CTGCAGTGATTTATTTTTTACTACCATGTGTTAAATGGTCAGTATTGTAGAAATCACCTATGACAATTTGATGCTGATAC------------CAATTCTGTGTCATTTTAGAACTGTTTGTTCGAACC--ACAT-CG-TGAGC--GAAT-AGTTGACACATTATT-TT---CCGGAAATTG-AT---AGGTATCT-CAAAACCATTCAATT--A-----AAATAA---------A---CCCAA------CCTGGTCATGACATG-CTTTTTTCCCCCTTAATAATT-GCAGATC--TTGAACCAGTGAAGAATTTGAGCCTAGACACATGCTGCAGA-----TTTTGTTTT-TCACTGTGTTTTGGACATAAAAGTTACAATGAAGCCCTATGGTAAATGTAA--AAGTGGTGTGAGACG
gi|7 : aGGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTTCAGACCT-----ACA-GATGAAGGAGG---TAGAAATACAACTTTAGTTC-TCTTCT-TTTTCTTT---T-T---T--------AGGGCTTTGTA--CTGTAATGGTT-GTTTTTTTTTGC--TGGCTT---TAGTTA-TA----ATAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGGACAATGCTGTGTTATTTCAGAATTGTTGGTTCG-------CAT-CT-AGGGC--GATT-AGTTGACATATTATTACT---CTGGAAATTG-AT---AAGTCTCA-CAAAAGCATTGAGTT--T-----AGAAAA---------A---AACAAAAACAACCCGGCCAAAGTATG-CTTTTTT--CCCTTTATAATT-GCATATC--TTGAACTAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA----ATTTGATTTT-TCACTCTGTTTTGGACATAAATGTTACAATGGAGCTCTATGGGAAATGTAA--TAGTGGTGTGAGACG
gi|8 : GGACTCA-CACCACTA---TTAT---CTCCCT-TGAGTACTCCGGAC---------A-GATGAAGGAGG---TAGAAATAAAACTTTAATTC-TCTTTT-TCTTCTTT---T-T---T-------CAGGGCTTTGTA--CTTCAATGTTTTGTTTTTTGCTAGCATGAGTTAAATGGTCAGTATTTTAAAAATCACCACTGAAAATTTGATGCTGATACCAGCTTTCTGAACAATTCTGT--CATTTCAGAATTGTTGATTCGAACC--GCAT-CT-AGGGC--AAAT-AGCTGACATATTATTACT---CTGGAAATTG-AT---AGGTCTCG-CAAAAGCATTGATTT--TTTTAAAAAAAA---------A---AAAAA------CCTAGTCAAGGTATA-CTATTTT--TCTTTTATAATT-GCATATC--TTGAACCAGTGAAGAATTTGAGCCCAGACACATGCTGCAGA----ATTTAATTTT-TCGCTCGGTTTTGGACATA--------AATGGAGCCCTATGGGAAATGTAA--TAGTGGTGTGAGA
gi|9 : CTCG-CACCACTA---TTGT---CTCCCT-TGAATACTCTGGACCT-----ACA-GATGAAGGAGG---TAGTAGTAAAAATACAGTTC-CCTTTT--CTTCTTT---T-T-----------CAAGACTTTATA--TTCCATTGATTTATTTATTCTTACCATGTGTTAAGTGGTCAATATTATAGAAACCATCACTAAAAATTTAATGCCAATACCACCTTTCAAGCAAATTCTGTGTCATTTTAGACTTCATGGGTCGAATC--ATAT-T---------------GTTGATATATTATTACT---CTGGAAACTG-AC---AGACGTCA-CAAAACCATTGAATT--T-----AAAAAA---------T---AAAAA------CCTGGTCAAAGTATGACTTTTTT--TGC-GTATAATT-GCAAATC--TTGAAGCAGTGAAGACTTTGAGCCAATACGCACGCTGCTGA----TTTTAATTTT-TCACGGTGTTGTTGATAAAAGTTTTATAATGGAGCCCTATGGGAAATTTAA--TAATGGCGTGAGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AATATCCAGACTGCATATAAAGGTAATAGGAAGCAAAACATTTTGATTTTTTTCTGTTTGCACAGATTT