lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222 111111111111111111
lowQualScore : 1 1 1 222 11 22 333333333333333333333333333333333333333333333333333333333333333333 22 11 1 11 11 444444444444444444444444444444444444444 3333 1 66666666666666 222222222222222222 22 5555555555555555555555555555 2222 222222 111 11 222
lowQualScore : 7 66 6 3 3 7 9 77 4 4 9 000 6 6 22 11 6 999999999999999999999999999999999999999999999999999999999999999999 77 33 2 22 2 22 2 9 2 6 77 2 8888 22 4 2 2 22 777777777777777777777777777777777777777 8888 7 55 6 0 6 1 44444444444444 444444444444444444 77 77 6 9999999999999999999999999999 4 2222 8 999999 6 777 77 0 0 11 000
lowQualScore : . .. . . . . . .. . . . ... . . .. .. . .................................................................. .. .. . .. . .. . . . . .. . .... .. . . . .. ....................................... .... . .. . . . . .............. .................. .. .. . ............................ . .... . ...... . ... .. . . .. ...
lowQualScore : 0 55 0 3 3 0 0 00 0 7 0 000 0 0 00 00 0 555555555555555555555555555555555555555555555555555555555555555555 55 88 8 66 7 66 8 9 2 7 44 1 2222 99 2 1 1 99 888888888888888888888888888888888888888 8888 7 44 0 4 0 4 55555555555555 000000000000000000 00 55 0 5555555555555555555555555555 7 7777 3 777777 7 777 99 3 1 00 000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATAANNATCTT-TCAT-GGGTTTGCGGTACGGGTGGAANATTCCGTCTCGAGGGATAACTATTTTGGCGGGGCCGA-GTT---CCAA------CGAAAACAGT------TATCCGAAGAGACGNCAATTTTTATCTGAACC-GAAAACCC-ATG--AAAGATACTTTTTCTTGCA-TACAACCCTAACTGTGTG-A-T-TTTT-T----A--A-G-AT-T--TTTATTCC--G-------TTNT-T-G----TTT--T-------T---AGTAGCGCA-T-GGATACCATAG-TATTTATGAATGAATACGTCAAA--GCGC--GCGA--TATTTATGAATGAA--TACAACATGTCAT-ATGGANNTAAGTCATAGCGCAGAGGATNATTAGCGAGCGGCGT-ACGT-ACAGCGCGAG--A-ATTTTATCTCGGCCCTAGGGTGANATAGAAATATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTGTGCAAGA--AAAACTCCCTCGCTT
Reference ( gi|1 ) : TCTTGTATATCTGTTAAAGATATTTGCATTTTACCCAAGTAAAATGCATGGTATCCTACTCATGCTAGACCGAGGTTATAAGTATTTT-TCAT-GGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG--------------ACT-AAAAACC--ATG--AAATATACTTTTTCTTGTA-AACAGCCATAACTGTGTG-A-T-ATTT-T----A--A-G-AT-T--TTTATTCC--G-------TTGT-T-G----TTT--T-------T---AGTAGCGCATT-GGATACAATGA-TATCTATGAATGAATACGTTAAA--GAAC--GTG---TATTTATGAATGGCGTTACGATATAACGCGATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCACAGCACGAG--A-ATTTAATCCCG-CCCTAGGGTGAGAGAGAAATATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGA--AAAATTCACGCGCTT
gi|15 : GGATATAATTATCTT-TAAT-TGGTTTGAGGCAAGGATGGAACATTCCATCTCAA
gi|2 : TATAAGAATCTTACCTT-GCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTT---CCAA------CGAAAACAGT------TATCCGAAGAGACGGCAATTTTTATCTGAACCGAAAAAGC--AAGGTAAGCTTA-TTTTTCTTGCATACCAAACATAAT----CA-A-T-ATTTAT----ATCA-A-CT-TAGTTTAT--C--A-------TTAT-T-G----ATT--T-------T---Aggaacctcgtttacagccaaaacattatcccttgc
gi|6 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacacATCTT-TCATTGGGTTTTCCGTACGGGTGGAAGATTCCTTCTCcaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|6 : tccgaCGT--------------ACG-GAAAACCCAATG--AAAGAT----TTTCTTGCA-AACAACCCTAACAATTTG-ACT-TTTT-T----A--ACG-AA-T--TTGATTTT--G-------GTAT-A-A----TTT--T-------TAC-AGTAGCGCA----GATACCATAAGTATTTTTTAATGAATACGTCAAA--G--C--GCGAAATATTTAAGAATGtttcttgcaaacaaccctaacaatttgacttttttaacgaatttgattttggtataatttttacagtagcgcagataccataagtattttttaatgaatacgtcaaagcgcgaaatatttaagaatgaatat
gi|10 : tccgagagaaggaatcttccacc-AAAAACTCTGTG--AAAGATACTTTTTCTTGTA-CACAACCCTAACTGTGT---------------------G-AT-T--TTTATTCT--G-------GTATAT-T----TTT--TATACATGT---AGTAGCACA-A-GGATACaatat
gi|9 : accg-AAAACCC--ATG--AAAGATACATATTCTTGCA-TAC-GACACAA--GTGTG-A-T--TTT-T----A--A-C-AT-T--TTTATTTT--GGTCGA--TTTT-T-T----TTT--T-------TTAAAGGAGTGCA-T-GAATACCATca
gi|3 : gTACATTTTCTTTCC-AACAGCCGTAACAATATG-A-T-TTTT-T----A--A-GGAT-T--TTTATTCC--A---------GTAT-GACCCTTT--C-------C---AGTAGCGTAA--AGATACCATAG-TATTTATGCACAA----GTCATA--GCAC--GAAA--TATTTATGAATG-------AATATGTCAT-ATGGAGTTAAGTCATAGCGTAGAGGATA-TT-GCGAGC-GCGT------GGAGAAAGAGTTATATGTAA----G-TGTTA-AGTGAT-GAAAAATACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTa
gi|20 : gTACTTTTTCTTGCA-TACAAC--TGAGTGTGT----T-A-TT-T----A--A-G-GT-T--TTTACTTC--A--------TAC-A-G----ATT--T-------TAC-AGTTGCGCAT
gi|8 : gACTTTTTCTTGTT-TACAACCCTAACTGTGTG-ATT-TTTT-T----A--A-G-AT-T--TTAATTCT--G-------GTCTAT-G----TTT--TA------T---AGTAGTGg
gi|7 : aatagttatcccgaggaacgcaattttttaatcagcaccgaaacccccttttaagaaTTTTCTTGCA-TACAACTGTTACTGTGTG-A-T--TTT-A----A--A-G-ATAT--TTAATTCT--G-------GTCTAT-A----TTT--TA------T---AGTAGTGCAAT--GATACCATAA-TATTTATTCATGAATACGTCAggtggttaccat
gi|11 : TTTTCTTGCA-TACAACCCTTACTATATG-A-T-TTTT-T----A--A-G-AT-T--TTTATTCT--GGTCTATCTGGTAT-G----TTT--T-------T---Atgacgttatgcgcgaggaggttaggataaaagtatgtcaggtattaatgaatgaacatgtcatatggcattaa
gi|23 : ACAACCCTAACTGTGTG-A-T-TTTT-T----A--A-G-AT-T--TTTATTCCCAA-------TT-T-T------TTT--T-------TAA-AGTAGCGttttttaaatatgttcaagaatatcatag
gi|12 : tCCCTAACTGTGGG-A-T-TTTT-TTTT-C--A-G-AT-T--CTAATTCC--GGC-----TTAT-T-T----TTT--G-------T---AATAGTGCAA--GGATACCATAG-TTTTTATGAATGGATACgaatgacac
gi|21 : CCCTAATTGTGTG-A-T-TTTT-T----A--A-G-AA-T--TTTATTTC-----------TGT-CAA----TTT--TTCTA---T---AGTAGTGCActcatagca
gi|19 : aCCCTAACTGTGTGTG-T-GTTT-TTTTTA--A-G-AT-T--TTTATTCC--AGT-----TTAT-T-T----TTT--A-------T---AGTA--GTATTAGGATAaagttatcgca
gi|5 : TAAATGTGTG-A-T-TTTT-T----A--A-G-CT-T--TTTATTCC--G-------GTCT-A-G----TTTTGT-------T---AGTAGCGCA-T-GGTTACCAAGG-TATTTGTGAATAAATATGTCATA--GCGCAAGT----TATTAATGAATGAA--TACAACATAtcatag
gi|14 : tagttatcccaagggacacagttttttcttcacaatggtataccccataaaaggtacTACCTGTGTG-A-T-TTTG-T----A--A-G-AT-T--TTTATTTC--GGT-----TTGT-T------TTT--T-------T---AGT-GCAAA----GATAC-GTGG-TATTTATGAATGAATtg
gi|22 : ccTAACTGTATG-ACT-TTTT-T----A--A-G-AT-T--TTTATTCC--A-------GTCTAT-G----TTT--T-------TAA-AGTAGCACAtttatgaatg
gi|13 : tACTGTGTG-A-TTGTTT-T----A--A-G-AT-T--TTTATTCCA-G-------TT-T-T-A----TTT--TTAA----T---AGTAACGCAAT--GATACCATAA-GTTTTATCAATGAATGTGTCAAA--aggacaccacag
gi|24 : cttACTGTGTG-A-T--TTT-T----A--A-G-AT-T--TTTATTTC--A-------ATTT-T-A----TTT--T-------TTAAAGAAGTGCA-T-GGATACCAT
gi|26 : -ATTT-T----A--AAG-AT-A--TTTATTCT--G-------TTGT-T-T----TTT--TA------T---AGTAGCGTA-A-GGATACa
gi|18 : gTAT-T-A----TTT--A-------T---AGTAGTGCAT--GGGTATTATGG-TATTTATGAATGAATATGTCAAAGCGAAA--G-G---TATGTATAAATcgtag
gi|5 : ctggtcATAAATAT--GTCATAGCGCAA-G--TTATTAATGAATGt
gi|2 : tagttatcccaagggacacagttttttcttcacaatggtataccccataaaaggtactaaatgtgtgattttttaagctttttattccggtctagttttgttagtagcgcatggttaccaaggtatttgtgaACGTCACAGCGCGAA--A-ATTTTATCTCGACCCTAGGGTGAGATAGAAATATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGA--AAAaatacaacatatg
gi|4 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaACGTAACAGCTCGAG--A-ATTTTATCTCGGCCCTAGGGTGAAATAGAAATACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAA--AAA
gi|28 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAAATGTCTAACCCTGGTAAAA--ATGTAGATATCATTATcat
gi|27 : AAATATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|25 : ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGA--AAAAT
gi|17 : AAAA--AAGCAGATATCCTAACCAGGTATGCAAGA--AAAAgttatgtg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTACAGTTGCACAAGGATACCGTAATATTTTTGCATACGTCATAGCACGAGGATTTTTATGATTGAAATATATTTGTATTTATAGTC
Alignments
lowQualScore : 1 2 777777777777 222222 11 33333333 111111 1 11111 222222222222222222222222222 111111 1111 11111 555555555555555555555 111111 2222222 1 11 33 1 33333 2222 1111
lowQualScore : 4 22 3 6 4 0 1 0 4 0 3 2 0 222222222222 333333 5 0 88 33333333 5 666666 77 5 1 0 3 2 11111 2 2 333 2 2 22 4444 4 222222222222222222222222222 444444 22 333 1111 2 2 2 5 22222 444444444444444444444 222222 1111111 9 0 3 22 7 88 66 5 33333 7777 0 1 1 1 555 0000 66 1 66 1 99 2 3
lowQualScore : . .. . . . . . . . . . . . ............ ...... . . .. ........ . ...... .. . . . . . ..... . . ... . . .. .... . ........................... ...... .. ... .... . . . . ..... ..................... ...... ....... . . . .. . .. .. . ..... .... . . . . ... .... .. . .. . .. . .
lowQualScore : 0 00 3 7 7 7 0 7 0 7 7 5 0 000000000000 000000 0 8 88 00000000 2 444444 99 7 4 8 3 1 66666 0 0 555 0 0 88 2222 0 000000000000000000000000000 666666 55 555 9999 5 7 5 4 55555 333333333333333333333 333333 7777777 0 8 2 00 3 00 00 5 00000 2222 2 0 0 0 888 6666 11 9 11 1 22 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATA-CAACCCTAA-CTGTGTGA-----TT-T-TTT---AA-G-ATT--TT----TA-TTCC--G-----NT-NT--------TG----TTTT--T---A--GTAG---CGCA-N--GGATACCAT-A-GTATTTATGAATGAATACGTCANAGC-----GCG-AGA-----------------TAT-T----TATGAATG-------AATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCA-CAGCGCGAGAATTTTATCTCGGCCCTAGGGTGAGATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGAA--AAACTCNCNCGCTT
Reference ( family-450 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATATAANNATCTT-TCATGGGTTTGCGGTACGGGTGGAANATTCCGTCTCGAGGGATAACTATTTTGGCGGGGCCGA-GTTC---CAA------CGAAAACAGTTA------TCCGAAGAGACGNCAATTTTT--ATCTGAACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATA-CAACCCTAA-CTGTGTGA-----TT-T-TTT---AA-G-ATT--TT----TA-TTCC--G-----TT-NT--------TG----TTTT--T---A--GTAG---CGCA-T--GGATACCAT-A-GTATTTATGAATGAATACGTCAAAGC-----GCG-CGA-----------------TAT-T----TATGAATG-------AATACAACATGTCATATGGANNTAAGTCATAGCGCAGAGGATNATTAGCGAGCGGCGT-ACGT-A-CAGCGCGAGAATTTTATCTCGGCCCTAGGGTGANATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTGTGCAAGAA--AAACTCCCTCGCTT
gi|1 : ACCTCGGTC-TAGCATGAG-TAGGATACCATGCATTTTACTTGGGTAAAA---TGCAAATATCTTTAACAGATATACAAGA
gi|1 : GGTTATAAGTATTTT-TCATGGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG----------------ACTAAA------AA--CC-A-TGA-AATATACTTTTTCTTGTAAA-CAGCCATAA-CTGTGTGA-----TA-T-TTT---AA-G-ATT--TT----TA-TTCC--G-----TT-GT--------TG----TTTT--T---A--GTAG---CGCATT--GGATACAAT-G-ATATCTATGAATGAATACGTTAAAGA-----ACG-TG------------------TAT-T----TATGAATGGCGTTACGATATAACGCG----ATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCA-CAGCACGAGAATTTAATCCC-GCCCTAGGGTGAGAGAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGAA--AAATTCACGCGCTTtataagtatttttcatgggtttgaggtgcggacggaaaattccatcccaatgcatgactgttttaacggtactgatgttctgccgaataacccaaaaacagttacatgtatcccgagagacggactaaaaaccatgaaatatactttttcttgtaaacagccataactgtgtgatattttaagatttttattccgttgttgtttttagtagcgcattggatacaatgatatctatgaatgaatacgttaaagaacgtgtatttatgaatggcgttacgatataacgcgatgaatttgccatagcgcatggattttaatgaatggcgtcacatcacagcacgagaatttaatcccgccctagggtgagagagaaatatctaaccccggtaaaaatgcagatatccttatccggtatgcaagaaaaattcacgcgctt
gi|10 : tcttgtatatctgttaaagatatttgcattttacccaagtaaaatgcatggtatcctactcatgctagaccgaACCGAA------AAACTCTG-TGA-AAGATACTTTTTCTTGTACA-CAACCCTAA-CTGTGTGA-----TT-T-TT---------ATT--CTGGTATA-TT----------TT-TTA-------TA----CATG--T---A--GTAG---CACA-A--GGATACCA
gi|11 : TTTTCTTGCATA-CAACCCTTA-CTATATGA-----TT-T-TTT---AA-G-ATT--TT----TA-TTCT--G-----GT-CTATCTGGTATG----TTTT--T---A--
gi|12 : CCCTAA-CTGTGGGA-----TT-T-TTTTTTCA-G-ATT--CT----AA-TTCC--GGC---TT-AT--------TT----TTTG--T---A--ATAG---TGCA-A--GGATACCAT-A-GTTTTTATGAATGGATACCTCATAGC-----ttttttaaatatgttcaagaatatcatag
gi|13 : CTTA-CTGTGTGA-----TTGT-TTT---AA-G-ATT--TT----TA-TTCC--A-----GT-TT--------TA----TTTT--T---A--ATAGTAACGCA-A--TGATACCATAA-GT-TTTATCAATGAATGTGTCAAAa
gi|14 : CCTAC-CTGTGTGA-----TT-T-TGT---AA-G-ATT--TT----TA-TTTC--G-----GT--T--------TG----TTTT--T------TTAG---TGCA-A--AGATA-CGT-G-GTATTTATGAATGAAT
gi|15 : GGATATAATTATCTT-TAATTGGTTTGAGGCAAGGATGGAACATTCCATCTCAAGGAAtttatgaatg
gi|16 : ---A--GTTG---CACA-A--GGATACCGT-A-ATATTT-T---TGCATACGTCATAGC-----ACGAGGA-----------------TTT-T----TATGATTG-------AAcctcgtttacagccaaaacattatcccttgc
gi|17 : ttacAATATTATCTCGACACTGAGGAGAGATAAAA----AA--A---AAA------AAAA--AAGCAGATATCCTAACCAGGTATGCAAGAA--AAACatatatttgtatttatagtc
gi|18 : T-AT--------TA----TTTA--T---A--GTAG---TGCA-T--GGGTATTAT-G-GTATTTATGAATGAATATGTCAAAGC-----GAA-AGG-----------------TAT-G----TATAAATactgttat
gi|19 : ctggtcCCCTAA-CTGTGTGTGTGTTTT-T-TTT---AA-G-ATT--TT----TA-TTCC--AGT---TT-AT--------TT----TTTA--T---A--GTA-----GTA-TTAGGATATCAT-A-Gt
gi|2 : TATAAGAATCTTACCTTGCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTTC---CAA------CGAAAACAGTTA------TCCGAAGAGACGGCAATTTTT--ATCTGAACCGAA------AA--AGCA-AGGTAAGCTTATTTTTCTTGCATACCAAACATAATCAAT---A-----TT-TATAT---CA-A-CTTAGTT----TA-T--C--A-----TT-AT--------TG----ATTT--T---A--
gi|2 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacac-ACGTCA-CAGCGCGAAAATTTTATCTCGACCCTAGGGTGAGATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGAA--AAcaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|20 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaTACTTTTTCTTGCATA-CAA--CTGA---GTGTG------TT-A-TTT---AA-G-GTT--TT----TA-CTTC--A------T-AC--------AG----ATTT--TAC-A--GTTG---CGCA-T--G
gi|21 : gACCCTAA-TTGTGTGA-----TT-T-TTT---AA-G-AAT--TT----TATTTCT--G-----TCAAT--------TT----TTCTA-T---A--GTAG---TGCA-
gi|22 : TAA-CTGTATGAC----TT-T-TTT---AA-G-ATT--TT----TA-TTCC--A-----GT-CTA-------TG----TTTT--TAA-A--GTAG---CACA-A--GGACACCAC-A-Gaagttatcgca
gi|23 : tTA-CAACCCTAA-CTGTGTGA-----TT-T-TTT---AA-G-ATT--TT----TA-TTCCCAA-----TT-TT--------TT----TTTA--A---A--GTAG---CG
gi|24 : A-CTGTGTGA-----TT-T-T-T---AA-G-ATT--TT----TA-TTTC--A-----AT-TT--------TA----TTTT--TTAAA--GAAG---TGCA-T--GGATACCAT-A-gaatgacac
gi|25 : --ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGAA--AAA
gi|26 : T-T-TTA---AA-G-ATA--TT----TA-TTCT--G-----TT-GT--------TT----TTTTA-T---A--GTAG---CGTA-A--GGATACCGT-A-Gtgttatgtg
gi|27 : gaAA----AT--ATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|28 : AA----AT--GTCTAACCCTGGTAAAA--ATGTAGATATCATTA
gi|3 : TACATTTTCTTTCCAA-CAGCCGTAA-CAATATGA-----TT-T-TTT---AA-GGATT--TT----TA-TTCC--A-----GT-AT---------GACCCTTTC--C---A--GTAG---CGTA-A--AGATACCAT-A-GTATTTATGCACAA----GTCATAGC-----ACG-AAA-----------------TAT-T----TATGAATG-------AATA-----TGTCATATGGAGTTAAGTCATAGCGTAGAGGAT-ATT-GCGAGCG------CGT-G---GAGAAAGAGTTATATGTAAGTGTTAAG-TGATG-AAAA----AT--ACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTt
gi|4 : g-ACGT-AACAGCTCGAGAATTTTATCTCGGCCCTAGGGTGAAATAGAA----AT--ACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAAA--AA
gi|5 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAGTTA------TCCCAAGGGAC-ACAGTTTTT---TCTTCAC--AATGGTATAC--CCCA-TAA-AAGGTACT--------------------AA-ATGTGTGA-----TT-T-TTT---AA-G-CTT--TT----TA-TTCC--G-----GT-CT--------AG----TTTTGTT---A--GTAG---CGCA-T--GGTTACCAA-G-GTATTTGTGAATAAATATGTCATAGC-----GCA-AGT-----------------TAT-T----AATGAATG-------AATACAACATATcat
gi|6 : t------TCCGA-GAGAAGG-AATCTTCC-ACCCGTACGGAA------AA--CCCAATGA-AAGAT----TTTCTTGCAAA-CAACCCTAA-CAATTTGAC----TT-T-TTT---AACG-AAT--TT----GA-TTTT--G-----GT-AT--------AA----TTTT--T---ACAGTAG---CGCA-----GATACCAT-AAGTATTTTTTAATGAATACGTCAAAGC-----GCG-AAA-----------------TAT-T----TAAGAATG-------AATAg
gi|7 : TTTTCTTGCATA-CAACTGTTA-CTGTGTGA-----TT-T-TA----AA-G-ATA--TT----TAATTCT--G-----GT-CTA-------TA----TTTTA-T---A--GTAG---TGCA-A--TGATACCAT-A-ATATTTATTCATGAATACGTCATGACGTTATGCG-CGAGGAGGTTAGGATAAAAGTATGTCAGGTATTAATG-------AATG-AACATGTCATATGGCATTAAt
gi|8 : AATAGTTA------TCCCGAGGAACG-CAATTTTTTAATCAGCACCGAA------AC--CCCC-TTTTAAGAAACTTTTTCTTGTTTA-CAACCCTAA-CTGTGTGAT----TT-T-TTT---AA-G-ATT--TT----AA-TTCT--G-----GT-CTA-------TG----TTTTA-T---A--GTAG---TGGG-T--GGTTACCAT-
gi|9 : GAA------AA--CCCA-TGA-AAGATACATATTCTTGCATA-CGACAC-AA---GTGTGA------T-T-TTT---AA-C-ATT--TT----TA-TTTT--GGTCGATT-TT--------TT----TTTT--TTAAA--GGAG---TGCA-T--GAATACCAT-A-
Alignments
lowQualScore : 1 1 222 222222 222222 22 22222222 111111 1 11111 11111111111111 3333333333333333 1111111 44444444444444444444 111 2222222 1 11 222 1 1 11 1111
lowQualScore : 1 3 44 0 0 1 0 1 1 5 000 999999 888888 00 88888888 5 666666 77 5 1 0 22222 2 333 2 2 2 4444 333 777 99999999999999 8888888888888888 22 1 44 2 2 2 1 4444444 44444444444444444444 000 1111111 9 4 3 1 7 66 222 5 5 33 0 2 0 3 1 1 6 7 0000 66 1 66 1 77 1 1
lowQualScore : . . .. . . . . . . . ... ...... ...... .. ........ . ...... .. . . . ..... . ... . . . .... ... ... .............. ................ .. . .. . . . . ....... .................... ... ....... . . . . . .. ... . . .. . . . . . . . . .... .. . .. . .. . .
lowQualScore : 0 3 33 7 7 0 7 0 0 5 555 555555 888888 00 00000000 2 444444 99 7 4 8 22222 1 777 1 1 1 5555 888 666 11111111111111 1111111111111111 66 9 88 4 5 5 0 4444444 11111111111111111111 000 7777777 0 2 2 0 3 55 000 5 0 22 2 5 2 7 0 0 7 3 6666 11 9 11 1 99 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TT----CCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
Reference ( family-450 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TT----CCGN--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAN-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
gi|1 : ACCTCGGTC-TAGCATGA-G-TAGGATACCATGCATTTTACTTGGGTAAAA---TGCAAATATCTTTAACAGATATACAAGA--
gi|1 : GGTTATAAGTATTTT-TCATGGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG----------------ACTAAA------AA--CC-A-TGA-AATATACTTTTTCTTGTAAACAGCCATAACTGTGTGA-----TA-TTTT---AA-G-ATTTTTA-TT----CCGT--T--GT--------TG----TTTT-------T--------A--GTA-GCGCATTGGATACAAT-G-ATATCTATGAATGAATACGTTAAA-------GAACGT-G------------------TATT---TATGAATGGCGTTACGATATAACGCG----ATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCACAGCACGAGAATTTAATCCCG-CCCTAGGGTGA-GAGAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGA--AAAATTCACGCGCTTtataagtatttttcatgggtttgaggtgcggacggaaaattccatcccaatgcatgactgttttaacggtactgatgttctgccgaataacccaaaaacagttacatgtatcccgagagacggactaaaaaccatgaaatatactttttcttgtaaacagccataactgtgtgatattttaagatttttattccgttgttgtttttagtagcgcattggatacaatgatatctatgaatgaatacgttaaagaacgtgtatttatgaatggcgttacgatataacgcgatgaatttgccatagcgcatggattttaatgaatggcgtcacatcacagcacgagaatttaatcccgccctagggtgagagagaaatatctaaccccggtaaaaatgcagatatccttatccggtatgcaagaaaaattcacgcgctt
gi|10 : tcttgtatatctgttaaagatatttgcattttacccaagtaaaatgcatggtatcctactcatgctagaccgaACCGAA------AAACTCTG-TGA-AAGATACTTTTTCTTGTACACAACCCTAACTGTGT--------------------G-ATTTTTA-TT----CTGG--T--ATA-------TT----TTTTATACATGT--------A--GTA-GCACAA-GGATACCA
gi|11 : TTTTCTTGCATACAACCCTTACTATATGA-----TT-TTTT---AA-G-ATTTTTA-TT----CTGG--T--CTATCTGGTATG----TTTT-------TATTTTTTAA--ATATGTTCAA-GAATATCAT-A-G
gi|12 : CCCTAACTGTGGGA-----TT-TTTTTTTCA-G-ATTCTAA-TT----CCGGCTT--AT--------TT----TTTG-------T--------A--ATA-GTGCAA-GGATACCAT-A-GTTTTTATGAATGGATACCTCATA-------GC
gi|13 : CTTACTGTGTGA-----TTGTTTT---AA-G-ATTTTTA-TT----CCAG--T--TT--------TA----TTTTTAA----T--------A--GTA-ACGCAA-TGATACCATAA-GT-TTTATCAATGAATGTGTCAAA-------a
gi|14 : CCTACCTGTGTGA-----TT-TTGT---AA-G-ATTTTTA-TT----TCGG--T---T--------TG----TTTT-------T-----------TTA-GTGCAA-AGATA-CGT-G-GTATTTATGAATGAAT
gi|15 : GGATATAATTATCTT-TAATTGGTTTGAGGCAAGGATGGAACATTCCATCTCAAGGAAtttatgaatg
gi|16 : --------A--GTT-GCACAA-GGATACCGT-A-ATATTT-T---TGCATACGTCATA-------GCACGAGG-----------------ATTTT---TATGATTGA-------Acctcgtttacagccaaaacattatcccttgc
gi|17 : ttacAATATTATCTCGACACTGAGGAGA-GATAAAA----AA--A---AAA------AAAA--AAGCAGATATCCTAACCAGGTATGCAAGA--AAAACatatatttgtatttatagtc
gi|18 : --T--AT--------TA----TTTA-------T--------A--GTA-GTGCAT-GGGTATTAT-G-GTATTTATGAATGAATATGTCAAA-------GCGAAA-G-----------------GTATG---TATAAATactgttat
gi|19 : ctggtcCCCTAACTGTGTGTGTGTTTT-TTTT---AA-G-ATTTTTA-TT----CCAG--T---T--------TA----TTTTTTA----T--------A--GTA-GTATTA-GGATATCAT-A-Gt
gi|2 : TATAAGAATCTTACCTTGCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTTC---CAA------CGAAAACAGTTA------TCCGAAGAGACGGCAATTTTT--ATCTGAACCGAA------AA--AGCA-AGGTAAGCTTATTTTTCTTGCATAC
gi|2 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacac-ACGTCACAGCGCGAAAATTTTATCTCGACCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGA--AAAcaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|20 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaTACTTTTTCTTGCATACAA--CTGA--GTGTG------TT-ATTT---AA-G-GTTTTTA-CT----TC-A--T--AC--------AG----ATTT-------TAC------A--GTT-GCGCAT-G
gi|21 : gACCCTAATTGTGTGA-----TT-TTTT---AA-G-AATTTTA-TT----TCTG--TCAAT--------TT----TTCTA------T--------A--GTA-GTGCAA-AGTTATC
gi|22 : TAACTGTATGAC----TT-TTTT---AA-G-ATTTTTA-TT----CCAG--T--CTA-------TG----TTTT-------TAA------A--GTA-GCACAA-GGACACCAC-A-Ggca
gi|23 : tTACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TT----CCCA--A--TT--------TT----TTTT-------TAA------A--GTA-GCGGAA-TGACAC
gi|24 : ACTGTGTGA-----TT-TT-T---AA-G-ATTTTTA-TT----TCAA--T--TT--------TA----TTTT-------TTAA-----A--GAA-GTGCAT-GGATACCAT-A-
gi|25 : --ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGA--AAAA
gi|26 : T-TTTA---AA-G-ATATTTA-TT----CTGT--T--GT--------TT----TTTTA------T--------A--GTA-GCGTAA-GGATACCGT-A-Gtgttatgtg
gi|27 : gaAA----AT--ATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|28 : AA----AT--GTCTAACCCTGGTAAAA--ATGTAGATATCATTA
gi|3 : TACATTTTCTTTCCAACAGCCGTAACAATATGA-----TT-TTTT---AA-GGATTTTTA-TT----CCAG--T--AT---------GACCCTTTC-------C--------A--GTA-GCGTAA-AGATACCAT-A-GTATTTATGCACAA----GTCATA-------GCACGA-A-----------------ATATT---TATGAATGA-------ATA-----TGTCATATGGAGTTAAGTCATAGCGTAGAGGA-TATT-GCGAGC-GCGT--------GGAGAAAGAGTTATATGTAAGTGTTA-AGTGATG--AAAA----AT--ACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTt
gi|4 : g-ACGTAACAGCTCGAGAATTTTATCTCGGCCCTAGGGTGA-AATAGAA----AT--ACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAA--AAA
gi|5 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAGTTA------TCCCAAGGGACA-CAGTTTTT---TCTTCAC--AATGGTATAC--CCCA-TAA-AAGGTACT-------------------AAATGTGTGA-----TT-TTTT---AA-G-CTTTTTA-TT----CCGG--T--CT--------AG----TTTTGT-----T--------A--GTA-GCGCAT-GGTTACCAA-G-GTATTTGTGAATAAATATGTCATA-------GCGCAA-G-----------------TTATT---AATGAATGA-------ATACAACATATcat
gi|6 : tCCGAGAGAAGG-AATCTTCC-ACCCGTACGGAA------AA--CCCAATGA-AAGAT----TTTCTTGCAAACAACCCTAACAATTTGAC----TT-TTTT---AACG-AATTTGA-TT----TTGG--T--AT--------AA----TTTT-------T--------ACAGTA-GCGCA---GATACCAT-AAGTATTTTTTAATGAATACGTCAAA-------GCGCGA-A-----------------ATATT---TAAGAATGA-------ATAg
gi|7 : tTTTTCTTGCATACAACTGTTACTGTGTGA-----TT-TTA----AA-G-ATATTTAATT----CTGG--T--CTA-------TA----TTTTA------T--------A--GTA-GTGCAA-TGATACCAT-A-ATATTTATTCATGAATACGTCATGACGTTATGCGCGA-GGAGGTTAGGATAAAAGTATGTCAGGTATTAATGA-------ATG-AACATGTCATATGGCATTAAt
gi|8 : AATAGTTA------TCCCGAGGAACG-CAATTTTTTAATCAGCACCGAA------AC--CCCC-TTTTAAGAAACTTTTTCTTGTTTACAACCCTAACTGTGTGAT----TT-TTTT---AA-G-ATTTTAA-TT----CTGG--T--CTA-------TG----TTTTA------T--------A--GTA-GTGGGT-GGTTACCAT-
gi|9 : GAA------AA--CCCA-TGA-AAGATACATATTCTTGCATACGACAC-AA--GTGTGA------T-TTTT---AA-C-ATTTTTA-TTTTGGTCGA--T--TT--------TT----TTTT-------TTTAA----A--GGA-GTGCAT-GAATACCAT-A-
Alignments
lowQualScore : 1 1 222 222222 222222 22 22222222 111111 1 11111 222222222222222222 3333333333333333 1111111 44444444444444444444 111 2222222 1 11 222 1 1 11 1111
lowQualScore : 1 3 44 0 0 1 0 1 1 5 000 999999 888888 00 88888888 5 666666 77 5 1 0 22222 2 333 2 2 2 22 111111111111111111 9999999999999999 22 1 33 2 2 2 1 4444444 44444444444444444444 000 1111111 9 4 3 1 7 66 222 5 5 33 0 2 0 3 1 1 6 7 0000 66 1 66 1 77 1 1
lowQualScore : . . .. . . . . . . . ... ...... ...... .. ........ . ...... .. . . . ..... . ... . . . .. .................. ................ .. . .. . . . . ....... .................... ... ....... . . . . . .. ... . . .. . . . . . . . . .... .. . .. . .. . .
lowQualScore : 0 3 33 7 7 0 7 0 0 5 555 555555 888888 00 00000000 2 444444 99 7 4 8 22222 1 777 1 1 1 88 333333333333333333 6666666666666666 66 9 22 4 5 5 0 4444444 11111111111111111111 000 7777777 0 2 2 0 3 55 000 5 0 22 2 5 2 7 0 0 7 3 6666 11 9 11 1 99 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
Reference ( family-450 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
gi|1 : ACCTCGGTC-TAGCATGA-G-TAGGATACCATGCATTTTACTTGGGTAAAA---TGCAAATATCTTTAACAGATATACAAGA--
gi|1 : GGTTATAAGTATTTT-TCATGGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG----------------ACTAAA------AA--CC-A-TGA-AATATACTTTTTCTTGTAAACAGCCATAACTGTGTGA-----TA-TTTT---AA-G-ATTTTTA-TTCCGT--T--GT--------TG----TTTT-------T--------A--GTA-GCGCATTGGATACAAT-G-ATATCTATGAATGAATACGTTAAA-------GAACGT-G------------------TATT---TATGAATGGCGTTACGATATAACGCG----ATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCACAGCACGAGAATTTAATCCCG-CCCTAGGGTGA-GAGAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGA--AAAATTCACGCGCTTtataagtatttttcatgggtttgaggtgcggacggaaaattccatcccaatgcatgactgttttaacggtactgatgttctgccgaataacccaaaaacagttacatgtatcccgagagacggactaaaaaccatgaaatatactttttcttgtaaacagccataactgtgtgatattttaagatttttattccgttgttgtttttagtagcgcattggatacaatgatatctatgaatgaatacgttaaagaacgtgtatttatgaatggcgttacgatataacgcgatgaatttgccatagcgcatggattttaatgaatggcgtcacatcacagcacgagaatttaatcccgccctagggtgagagagaaatatctaaccccggtaaaaatgcagatatccttatccggtatgcaagaaaaattcacgcgctt
gi|10 : tcttgtatatctgttaaagatatttgcattttacccaagtaaaatgcatggtatcctactcatgctagaccgaACCGAA------AAACTCTG-TGA-AAGATACTTTTTCTTGTACACAACCCTAACTGTGT--------------------G-ATTTTTA-TTCTGG--T--ATA-------TT----TTTTATACATGT--------A--GTA-GCACAA-GGATACCA
gi|11 : TTTTCTTGCATACAACCCTTACTATATGA-----TT-TTTT---AA-G-ATTTTTA-TTCTGG--T--CTATCTGGTATG----TTTT-------TATTTTTTAA--ATATGTTCAA-GAATATCAT-A-G
gi|12 : CCCTAACTGTGGGA-----TT-TTTTTTTCA-G-ATTCTAA-TTCCGGCTT--AT--------TT----TTTG-------T--------A--ATA-GTGCAA-GGATACCAT-A-GTTTTTATGAATGGATACCTCATA-------GC
gi|13 : CTTACTGTGTGA-----TTGTTTT---AA-G-ATTTTTA-TTCCAG--T--TT--------TA----TTTTTAA----T--------A--GTA-ACGCAA-TGATACCATAA-GT-TTTATCAATGAATGTGTCAAA-------a
gi|14 : CCTACCTGTGTGA-----TT-TTGT---AA-G-ATTTTTA-TTTCGG--T---T--------TG----TTTT-------T-----------TTA-GTGCAA-AGATA-CGT-G-GTATTTATGAATGAAT
gi|15 : GGATATAATTATCTT-TAATTGGTTTGAGGCAAGGATGGAACATTCCATCTCAAGGAAtttatgaatg
gi|16 : --------A--GTT-GCACAA-GGATACCGT-A-ATATTT-T---TGCATACGTCATA-------GCACGAGG-----------------ATTTT---TATGATTGA-------Acctcgtttacagccaaaacattatcccttgc
gi|17 : ttacAATATTATCTCGACACTGAGGAGA-GATAAAA----AA--A---AAA------AAAA--AAGCAGATATCCTAACCAGGTATGCAAGA--AAAACatatatttgtatttatagtc
gi|18 : --T--AT--------TA----TTTA-------T--------A--GTA-GTGCAT-GGGTATTAT-G-GTATTTATGAATGAATATGTCAAA-------GCGAAA-G-----------------GTATG---TATAAATactgttat
gi|19 : ctggtcCCCTAACTGTGTGTGTGTTTT-TTTT---AA-G-ATTTTTA-TTCCAG--T---T--------TA----TTTTTTA----T--------A--GTA-GTATTA-GGATATCAT-A-Gt
gi|2 : TATAAGAATCTTACCTTGCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTTC---CAA------CGAAAACAGTTA------TCCGAAGAGACGGCAATTTTT--ATCTGAACCGAA------AA--AGCA-AGGTAAGCTTATTTTTCTTGCATAC
gi|2 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacac-ACGTCACAGCGCGAAAATTTTATCTCGACCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGA--AAAcaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|20 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaTACTTTTTCTTGCATACAA--CTGA--GTGTG------TT-ATTT---AA-G-GTTTTTA-CTTC-A--T--AC--------AG----ATTT-------TAC------A--GTT-GCGCA
gi|21 : gACCCTAATTGTGTGA-----TT-TTTT---AA-G-AATTTTA-TTTCTG--TCAAT--------TT----TTCTA------T--------A--GTA-GTGCAA-AGTTATCtg
gi|22 : TAACTGTATGAC----TT-TTTT---AA-G-ATTTTTA-TTCCAG--T--CTA-------TG----TTTT-------TAA------A--GTA-GCACAA-GGACACCAC-A-Ggca
gi|23 : tTACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCCA--A--TT--------TT----TTTT-------TAA------A--GTA-GCGGAA-TGACAC
gi|24 : ACTGTGTGA-----TT-TT-T---AA-G-ATTTTTA-TTTCAA--T--TT--------TA----TTTT-------TTAA-----A--GAA-GTGCAT-GGATACCAT-A-
gi|25 : --ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGA--AAAA
gi|26 : T-TTTA---AA-G-ATATTTA-TTCTGT--T--GT--------TT----TTTTA------T--------A--GTA-GCGTAA-GGATACCGT-A-Gtgttatgtg
gi|27 : gaAA----AT--ATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|28 : AA----AT--GTCTAACCCTGGTAAAA--ATGTAGATATCATTA
gi|3 : TACATTTTCTTTCCAACAGCCGTAACAATATGA-----TT-TTTT---AA-GGATTTTTA-TTCCAG--T--AT---------GACCCTTTC-------C--------A--GTA-GCGTAA-AGATACCAT-A-GTATTTATGCACAA----GTCATA-------GCACGA-A-----------------ATATT---TATGAATGA-------ATA-----TGTCATATGGAGTTAAGTCATAGCGTAGAGGA-TATT-GCGAGC-GCGT--------GGAGAAAGAGTTATATGTAAGTGTTA-AGTGATG--AAAA----AT--ACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTt
gi|4 : g-ACGTAACAGCTCGAGAATTTTATCTCGGCCCTAGGGTGA-AATAGAA----AT--ACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAA--AAA
gi|5 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAGTTA------TCCCAAGGGACA-CAGTTTTT---TCTTCAC--AATGGTATAC--CCCA-TAA-AAGGTACT-------------------AAATGTGTGA-----TT-TTTT---AA-G-CTTTTTA-TTCCGG--T--CT--------AG----TTTTGT-----T--------A--GTA-GCGCAT-GGTTACCAA-G-GTATTTGTGAATAAATATGTCATA-------GCGCAA-G-----------------TTATT---AATGAATGA-------ATACAACATATcat
gi|6 : tCCGAGAGAAGG-AATCTTCC-ACCCGTACGGAA------AA--CCCAATGA-AAGAT----TTTCTTGCAAACAACCCTAACAATTTGAC----TT-TTTT---AACG-AATTTGA-TTTTGG--T--AT--------AA----TTTT-------T--------ACAGTA-GCGCA---GATACCAT-AAGTATTTTTTAATGAATACGTCAAA-------GCGCGA-A-----------------ATATT---TAAGAATGA-------ATAg
gi|7 : tTTTTCTTGCATACAACTGTTACTGTGTGA-----TT-TTA----AA-G-ATATTTAATTCTGG--T--CTA-------TA----TTTTA------T--------A--GTA-GTGCAA-TGATACCAT-A-ATATTTATTCATGAATACGTCATGACGTTATGCGCGA-GGAGGTTAGGATAAAAGTATGTCAGGTATTAATGA-------ATG-AACATGTCATATGGCATTAAt
gi|8 : AATAGTTA------TCCCGAGGAACG-CAATTTTTTAATCAGCACCGAA------AC--CCCC-TTTTAAGAAACTTTTTCTTGTTTACAACCCTAACTGTGTGAT----TT-TTTT---AA-G-ATTTTAA-TTCTGG--T--CTA-------TG----TTTTA------T--------A--GTA-GTGGGT-GGTTACCAT-
gi|9 : GAA------AA--CCCA-TGA-AAGATACATATTCTTGCATACGACAC-AA--GTGTGA------T-TTTT---AA-C-ATTTTTA-TTTTGG--TCGAT--------TT----TTTT-------TTTTTAA--A--GGA-GTGCAT-GAATACCAT-A-
Alignments
lowQualScore : 1 1 222 222222 222222 22 22222222 111111 1 11111 222222222222222222 3333333333333333 1111111 44444444444444444444 111 2222222 1 11 222 1 1 11 1111
lowQualScore : 1 3 44 0 0 1 0 1 1 5 000 999999 888888 00 88888888 5 666666 77 5 1 0 22222 2 333 2 2 2 22 111111111111111111 9999999999999999 22 1 33 2 2 2 1 4444444 44444444444444444444 000 1111111 9 4 3 1 7 66 222 5 5 33 0 2 0 3 1 1 6 7 0000 66 1 66 1 77 1 1
lowQualScore : . . .. . . . . . . . ... ...... ...... .. ........ . ...... .. . . . ..... . ... . . . .. .................. ................ .. . .. . . . . ....... .................... ... ....... . . . . . .. ... . . .. . . . . . . . . .... .. . .. . .. . .
lowQualScore : 0 3 33 7 7 0 7 0 0 5 555 555555 888888 00 00000000 2 444444 99 7 4 8 22222 1 777 1 1 1 88 333333333333333333 6666666666666666 66 9 22 4 5 5 0 4444444 11111111111111111111 000 7777777 0 2 2 0 3 55 000 5 0 22 2 5 2 7 0 0 7 3 6666 11 9 11 1 99 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
Reference ( family-450 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
gi|1 : ACCTCGGTC-TAGCATGA-G-TAGGATACCATGCATTTTACTTGGGTAAAA---TGCAAATATCTTTAACAGATATACAAGA--
gi|1 : GGTTATAAGTATTTT-TCATGGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG----------------ACTAAA------AA--CC-A-TGA-AATATACTTTTTCTTGTAAACAGCCATAACTGTGTGA-----TA-TTTT---AA-G-ATTTTTA-TTCCGT--T--GT--------TG----TTTT-------T--------A--GTA-GCGCATTGGATACAAT-G-ATATCTATGAATGAATACGTTAAA-------GAACGT-G------------------TATT---TATGAATGGCGTTACGATATAACGCG----ATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCACAGCACGAGAATTTAATCCCG-CCCTAGGGTGA-GAGAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGA--AAAATTCACGCGCTTtataagtatttttcatgggtttgaggtgcggacggaaaattccatcccaatgcatgactgttttaacggtactgatgttctgccgaataacccaaaaacagttacatgtatcccgagagacggactaaaaaccatgaaatatactttttcttgtaaacagccataactgtgtgatattttaagatttttattccgttgttgtttttagtagcgcattggatacaatgatatctatgaatgaatacgttaaagaacgtgtatttatgaatggcgttacgatataacgcgatgaatttgccatagcgcatggattttaatgaatggcgtcacatcacagcacgagaatttaatcccgccctagggtgagagagaaatatctaaccccggtaaaaatgcagatatccttatccggtatgcaagaaaaattcacgcgctt
gi|10 : tcttgtatatctgttaaagatatttgcattttacccaagtaaaatgcatggtatcctactcatgctagaccgaACCGAA------AAACTCTG-TGA-AAGATACTTTTTCTTGTACACAACCCTAACTGTGT--------------------G-ATTTTTA-TTCTGG--T--ATA-------TT----TTTTATACATGT--------A--GTA-GCACAA-GGATACCA
gi|11 : TTTTCTTGCATACAACCCTTACTATATGA-----TT-TTTT---AA-G-ATTTTTA-TTCTGG--T--CTATCTGGTATG----TTTT-------TATTTTTTAA--ATATGTTCAA-GAATATCAT-A-G
gi|12 : CCCTAACTGTGGGA-----TT-TTTTTTTCA-G-ATTCTAA-TTCCGGCTT--AT--------TT----TTTG-------T--------A--ATA-GTGCAA-GGATACCAT-A-GTTTTTATGAATGGATACCTCATA-------GC
gi|13 : CTTACTGTGTGA-----TTGTTTT---AA-G-ATTTTTA-TTCCAG--T--TT--------TA----TTTTTAA----T--------A--GTA-ACGCAA-TGATACCATAA-GT-TTTATCAATGAATGTGTCAAA-------a
gi|14 : CCTACCTGTGTGA-----TT-TTGT---AA-G-ATTTTTA-TTTCGG--T---T--------TG----TTTT-------T-----------TTA-GTGCAA-AGATA-CGT-G-GTATTTATGAATGAAT
gi|15 : GGATATAATTATCTT-TAATTGGTTTGAGGCAAGGATGGAACATTCCATCTCAAGGAAtttatgaatg
gi|16 : --------A--GTT-GCACAA-GGATACCGT-A-ATATTT-T---TGCATACGTCATA-------GCACGAGG-----------------ATTTT---TATGATTGA-------Acctcgtttacagccaaaacattatcccttgc
gi|17 : ttacAATATTATCTCGACACTGAGGAGA-GATAAAA----AA--A---AAA------AAAA--AAGCAGATATCCTAACCAGGTATGCAAGA--AAAACatatatttgtatttatagtc
gi|18 : --T--AT--------TA----TTTA-------T--------A--GTA-GTGCAT-GGGTATTAT-G-GTATTTATGAATGAATATGTCAAA-------GCGAAA-G-----------------GTATG---TATAAATactgttat
gi|19 : ctggtcCCCTAACTGTGTGTGTGTTTT-TTTT---AA-G-ATTTTTA-TTCCAG--T---T--------TA----TTTTTTA----T--------A--GTA-GTATTA-GGATATCAT-A-Gt
gi|2 : TATAAGAATCTTACCTTGCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTTC---CAA------CGAAAACAGTTA------TCCGAAGAGACGGCAATTTTT--ATCTGAACCGAA------AA--AGCA-AGGTAAGCTTATTTTTCTTGCATAC
gi|2 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacac-ACGTCACAGCGCGAAAATTTTATCTCGACCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGA--AAAcaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|20 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaTACTTTTTCTTGCATACAA--CTGA--GTGTG------TT-ATTT---AA-G-GTTTTTA-CTTC-A--T--AC--------AG----ATTT-------TAC------A--GTT-GCGCA
gi|21 : gACCCTAATTGTGTGA-----TT-TTTT---AA-G-AATTTTA-TTTCTG--TCAAT--------TT----TTCTA------T--------A--GTA-GTGCAA-AGTTATCtg
gi|22 : TAACTGTATGAC----TT-TTTT---AA-G-ATTTTTA-TTCCAG--T--CTA-------TG----TTTT-------TAA------A--GTA-GCACAA-GGACACCAC-A-Ggca
gi|23 : tTACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCCA--A--TT--------TT----TTTT-------TAA------A--GTA-GCGGAA-TGACAC
gi|24 : ACTGTGTGA-----TT-TT-T---AA-G-ATTTTTA-TTTCAA--T--TT--------TA----TTTT-------TTAA-----A--GAA-GTGCAT-GGATACCAT-A-
gi|25 : --ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGA--AAAA
gi|26 : T-TTTA---AA-G-ATATTTA-TTCTGT--T--GT--------TT----TTTTA------T--------A--GTA-GCGTAA-GGATACCGT-A-Gtgttatgtg
gi|27 : gaAA----AT--ATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|28 : AA----AT--GTCTAACCCTGGTAAAA--ATGTAGATATCATTA
gi|3 : TACATTTTCTTTCCAACAGCCGTAACAATATGA-----TT-TTTT---AA-GGATTTTTA-TTCCAG--T--AT---------GACCCTTTC-------C--------A--GTA-GCGTAA-AGATACCAT-A-GTATTTATGCACAA----GTCATA-------GCACGA-A-----------------ATATT---TATGAATGA-------ATA-----TGTCATATGGAGTTAAGTCATAGCGTAGAGGA-TATT-GCGAGC-GCGT--------GGAGAAAGAGTTATATGTAAGTGTTA-AGTGATG--AAAA----AT--ACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTt
gi|4 : g-ACGTAACAGCTCGAGAATTTTATCTCGGCCCTAGGGTGA-AATAGAA----AT--ACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAA--AAA
gi|5 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAGTTA------TCCCAAGGGACA-CAGTTTTT---TCTTCAC--AATGGTATAC--CCCA-TAA-AAGGTACT-------------------AAATGTGTGA-----TT-TTTT---AA-G-CTTTTTA-TTCCGG--T--CT--------AG----TTTTGT-----T--------A--GTA-GCGCAT-GGTTACCAA-G-GTATTTGTGAATAAATATGTCATA-------GCGCAA-G-----------------TTATT---AATGAATGA-------ATACAACATATcat
gi|6 : tCCGAGAGAAGG-AATCTTCC-ACCCGTACGGAA------AA--CCCAATGA-AAGAT----TTTCTTGCAAACAACCCTAACAATTTGAC----TT-TTTT---AACG-AATTTGA-TTTTGG--T--AT--------AA----TTTT-------T--------ACAGTA-GCGCA---GATACCAT-AAGTATTTTTTAATGAATACGTCAAA-------GCGCGA-A-----------------ATATT---TAAGAATGA-------ATAg
gi|7 : tTTTTCTTGCATACAACTGTTACTGTGTGA-----TT-TTA----AA-G-ATATTTAATTCTGG--T--CTA-------TA----TTTTA------T--------A--GTA-GTGCAA-TGATACCAT-A-ATATTTATTCATGAATACGTCATGACGTTATGCGCGA-GGAGGTTAGGATAAAAGTATGTCAGGTATTAATGA-------ATG-AACATGTCATATGGCATTAAt
gi|8 : AATAGTTA------TCCCGAGGAACG-CAATTTTTTAATCAGCACCGAA------AC--CCCC-TTTTAAGAAACTTTTTCTTGTTTACAACCCTAACTGTGTGAT----TT-TTTT---AA-G-ATTTTAA-TTCTGG--T--CTA-------TG----TTTTA------T--------A--GTA-GTGGGT-GGTTACCAT-
gi|9 : GAA------AA--CCCA-TGA-AAGATACATATTCTTGCATACGACAC-AA--GTGTGA------T-TTTT---AA-C-ATTTTTA-TTTTGG--TCGAT--------TT----TTTT-------TTTTTAA--A--GGA-GTGCAT-GAATACCAT-A-
blockSeqs : A A CA T A G . . . . GC TAATCAGC C TGGTAT AC A T GTGTT G TTT C G A CT CTATCTGGTATG TATTTTTTA CA T A A A G T ACGTTAT GGAGGTTAGGATAAAAGTA AGG . C A T G A GA TA . . A C A C G T A . . C CT T AT C T
blockSeqs : . TT G G . C CACCCGT C . . . T C . . . . . . ATGACCC ATACATGT . . A . . C A . GGA . . . A T A A A A A C A . A . . C . C .
blockSeqs : . G ATCTGA G . . . . C . . . . . . CAATTT TTTTTAA . . A . . G T . GG . . . . T . . G C G . A . . A . T .
blockSeqs : C TCTTC C . . . . T . . . . . . CGATTT TAAT . . A . . G A . AA . . G T G . A . . T . T .
blockSeqs : . . . . . . . . . . . . ATATT TTAT . . A . . G T . GT . . . C . . . . . C . C .
blockSeqs : . . . . . . . . . . . CTATG TTAA . . A . . G T . AA . . . C . C .
blockSeqs : . . . . . . . CTATA TAC . . T . . T A . . . C . T
blockSeqs : . . . . . . . CTATG TAA . . A . . T T . . . .
blockSeqs : . . . . . . . ATTT TAA . . A . . .
blockSeqs : . . . . . . . TTTA GTT . . A . .
blockSeqs : . . . . . . . ATTA AT . . A . .
blockSeqs : . . . . . . . ACAG AT . . T . .
blockSeqs : . . . . . . . TTTT AT . . A . .
blockSeqs : . . . . . . . TTTA AT . . A . .
blockSeqs : . . . . . . . GTTT T . . T . .
blockSeqs : . . . . . . . CTAG T . . A .
blockSeqs : . . . . . . . ATAA T . . T
blockSeqs : . . . . . . TTG C . . T
blockSeqs : . TTA T . . .
blockSeqs : . .
blockSeqCons : CATCCGC* A* GA****************** ******* **** **
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTT--ATCCGCACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTTCATCCGC-ACCGAA------AA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGAGA------------------TATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
Alignments
lowQualScore : 1 1 222 222222 222222 22 22222222 1 11111 222222222222222222 3333333333333333 1111111 44444444444444444444 111 2222222 1 11 222 1 1 11 1111
lowQualScore : 1 3 44 0 0 1 0 1 1 5 000 999999 888888 00 11111111 77 77 5 1 0 22222 2 333 2 2 2 22 111111111111111111 9999999999999999 22 1 33 2 2 2 1 4444444 44444444444444444444 000 1111111 9 4 3 1 7 66 222 5 5 33 0 2 0 3 1 1 6 7 0000 66 1 66 1 77 1 1
lowQualScore : . . .. . . . . . . . ... ...... ...... .. ........ .. .. . . . ..... . ... . . . .. .................. ................ .. . .. . . . . ....... .................... ... ....... . . . . . .. ... . . .. . . . . . . . . .... .. . .. . .. . .
lowQualScore : 0 3 33 7 7 0 7 0 0 5 555 555555 888888 00 66666666 99 99 7 4 8 22222 1 777 1 1 1 88 333333333333333333 6666666666666666 66 9 22 4 5 5 0 4444444 11111111111111111111 000 7777777 0 2 2 0 3 55 000 5 0 22 2 5 2 7 0 0 7 3 6666 11 9 11 1 99 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTTTA-TCCGCACCG--AAAA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
Reference ( family-450 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTATAAGTATCTT-TCATGGGTTTGAGGCGCGGACGGAAAATTCCGTCNCGAGGNATGACTGTTTTGGCGGNGCCGATGTTCTGCCGAATAACCCGAAAACAGTTA------TCCCGAGAGACGGCAATTTTTCA-TCCGCACCG--AAAA--CCCA-TGA-AAGATACTTTTTCTTGCATACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCGG--T--NT--------TG----TTTT-------T--------A--GTA-GCGCAA-GGATACCAT-A-GTATTTATGAATGAATACGTCANA-------GCGCGA-G-----------------ATATT---TATGAATGA-------ATACAACGTGTCATATGGANTTAAGCCATAGCGCANAGGATTATTAGCGAGCGGCGT-ACGTCACAGCGCGAGAATTTTATCTCGGCCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTACCCGGTATGCAAGA--AAAACTCNCNCGCTT
gi|1 : ACCTCGGTC-TAGCATGA-G-TAGGATACCATGCATTTTACTTGGGTAAAA---TGCAAATATCTTTAACAGATATACAAGA--
gi|1 : GGTTATAAGTATTTT-TCATGGGTTTGAGGTGCGGACGGAAAATTCCATCCCAATGCATGACTGTTTTAACGGTACTGATGTTCTGCCGAATAACCCAAAAACAGTTACATGTATCCCGAGAGACGG----------------ACTA--AAAA--CC-A-TGA-AATATACTTTTTCTTGTAAACAGCCATAACTGTGTGA-----TA-TTTT---AA-G-ATTTTTA-TTCCGT--T--GT--------TG----TTTT-------T--------A--GTA-GCGCATTGGATACAAT-G-ATATCTATGAATGAATACGTTAAA-------GAACGT-G------------------TATT---TATGAATGGCGTTACGATATAACGCG----ATGAATTT--GCCATAGCGCAT-GGATT-TTAATGAATGGCGTCACATCACAGCACGAGAATTTAATCCCG-CCCTAGGGTGA-GAGAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATCCTTATCCGGTATGCAAGA--AAAATTCACGCGCTTtataagtatttttcatgggtttgaggtgcggacggaaaattccatcccaatgcatgactgttttaacggtactgatgttctgccgaataacccaaaaacagttacatgtatcccgagagacggactaaaaaccatgaaatatactttttcttgtaaacagccataactgtgtgatattttaagatttttattccgttgttgtttttagtagcgcattggatacaatgatatctatgaatgaatacgttaaagaacgtgtatttatgaatggcgttacgatataacgcgatgaatttgccatagcgcatggattttaatgaatggcgtcacatcacagcacgagaatttaatcccgccctagggtgagagagaaatatctaaccccggtaaaaatgcagatatccttatccggtatgcaagaaaaattcacgcgctt
gi|10 : tcttgtatatctgttaaagatatttgcattttacccaagtaaaatgcatggtatcctactcatgctagaccgaACCG--AAAAACTCTG-TGA-AAGATACTTTTTCTTGTACACAACCCTAACTGTGT--------------------G-ATTTTTA-TTCTGG--T--ATA-------TT----TTTTATACATGT--------A--GTA-GCACAA-GGATACCA
gi|11 : TTTTCTTGCATACAACCCTTACTATATGA-----TT-TTTT---AA-G-ATTTTTA-TTCTGG--T--CTATCTGGTATG----TTTT-------TATTTTTTAA--ATATGTTCAA-GAATATCAT-A-G
gi|12 : CCCTAACTGTGGGA-----TT-TTTTTTTCA-G-ATTCTAA-TTCCGGCTT--AT--------TT----TTTG-------T--------A--ATA-GTGCAA-GGATACCAT-A-GTTTTTATGAATGGATACCTCATA-------GC
gi|13 : CTTACTGTGTGA-----TTGTTTT---AA-G-ATTTTTA-TTCCAG--T--TT--------TA----TTTTTAA----T--------A--GTA-ACGCAA-TGATACCATAA-GT-TTTATCAATGAATGTGTCAAA-------a
gi|14 : CCTACCTGTGTGA-----TT-TTGT---AA-G-ATTTTTA-TTTCGG--T---T--------TG----TTTT-------T-----------TTA-GTGCAA-AGATA-CGT-G-GTATTTATGAATGAAT
gi|15 : GGATATAATTATCTT-TAATTGGTTTGAGGCAAGGATGGAACATTCCATCTCAAGGAAtttatgaatg
gi|16 : --------A--GTT-GCACAA-GGATACCGT-A-ATATTT-T---TGCATACGTCATA-------GCACGAGG-----------------ATTTT---TATGATTGA-------Acctcgtttacagccaaaacattatcccttgc
gi|17 : ttacAATATTATCTCGACACTGAGGAGA-GATAAAA----AA--A---AAA------AAAA--AAGCAGATATCCTAACCAGGTATGCAAGA--AAAACatatatttgtatttatagtc
gi|18 : --T--AT--------TA----TTTA-------T--------A--GTA-GTGCAT-GGGTATTAT-G-GTATTTATGAATGAATATGTCAAA-------GCGAAA-G-----------------GTATG---TATAAATactgttat
gi|19 : ctggtcCCCTAACTGTGTGTGTGTTTT-TTTT---AA-G-ATTTTTA-TTCCAG--T---T--------TA----TTTTTTA----T--------A--GTA-GTATTA-GGATATCAT-A-Gt
gi|2 : TATAAGAATCTTACCTTGCTTTTGCGGTTCGGGTAGAAAATTCCGTCGCGAGGGATAACTATTTTGGCGGGGCCGA-GTT---CCAA------CGAAAACAGTTA------TCCGAAGAGACGGCAATTTTT-A-TCTGAACCG--AAAA--AGCA-AGGTAAGCTTATTTTTCTTGCATAC
gi|2 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacac-ACGTCACAGCGCGAAAATTTTATCTCGACCCTAGGGTGA-GATAGAA----AT--ATCTAACCCCGGTAAAA--ATGCAGATATTCTTATCCGGTGTGCAAGA--AAAcaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaacgtcacagcgcgaaaattttatctcgaccctagggtgagatagaaatatctaaccccggtaaaaatgcagatattcttatccggtgtgcaagaaaa
gi|20 : ttcttatctctgttggcaaaaacatatctttaaaatatgttttatttacaggtctgacactataagaatcttaccttgcttttgcggttcgggtagaaaattccgtcgcgagggataactattttggcggggccgagttccaacgaaaacagttatccgaagagacggcaatttttatctgaaccgaaaaagcaaggtaagcttatttttcttgcataccaaacataatcaatatttatatcaacttagtttatcattattgattttacaacggtcgcttttaagacgtttaattatatgatttacgtcatatattttatatgttacgccatctagatggttccaTACTTTTTCTTGCATACAA--CTGA--GTGTG------TT-ATTT---AA-G-GTTTTTA-CTTC-A--T--AC--------AG----ATTT-------TAC------A--GTT-GCGCA
gi|21 : gACCCTAATTGTGTGA-----TT-TTTT---AA-G-AATTTTA-TTTCTG--TCAAT--------TT----TTCTA------T--------A--GTA-GTGCAA-AGTTATCtg
gi|22 : TAACTGTATGAC----TT-TTTT---AA-G-ATTTTTA-TTCCAG--T--CTA-------TG----TTTT-------TAA------A--GTA-GCACAA-GGACACCAC-A-Ggca
gi|23 : tTACAACCCTAACTGTGTGA-----TT-TTTT---AA-G-ATTTTTA-TTCCCA--A--TT--------TT----TTTT-------TAA------A--GTA-GCGGAA-TGACAC
gi|24 : ACTGTGTGA-----TT-TT-T---AA-G-ATTTTTA-TTTCAA--T--TT--------TA----TTTT-------TTAA-----A--GAA-GTGCAT-GGATACCAT-A-
gi|25 : --ATCTTACATCGGTACAG--TGGCAGATACCTTTGTCTGGTATGCAAGA--AAAA
gi|26 : T-TTTA---AA-G-ATATTTA-TTCTGT--T--GT--------TT----TTTTA------T--------A--GTA-GCGTAA-GGATACCGT-A-Gtgttatgtg
gi|27 : gaAA----AT--ATCTAATTGCAATAAAA--ATGCAGATATCCTTTCCCAGTGT
gi|28 : AA----AT--GTCTAACCCTGGTAAAA--ATGTAGATATCATTA
gi|3 : TACATTTTCTTTCCAACAGCCGTAACAATATGA-----TT-TTTT---AA-GGATTTTTA-TTCCAG--T--AT---------GACCCTTTC-------C--------A--GTA-GCGTAA-AGATACCAT-A-GTATTTATGCACAA----GTCATA-------GCACGA-A-----------------ATATT---TATGAATGA-------ATA-----TGTCATATGGAGTTAAGTCATAGCGTAGAGGA-TATT-GCGAGC-GCGT--------GGAGAAAGAGTTATATGTAAGTGTTA-AGTGATG--AAAA----AT--ACGTA--CCTAGTAAAACTACGCGAATATCTTTGCCCTGCATGTAAGAATAAAGCTCCCTCGCTTt
gi|4 : g-ACGTAACAGCTCGAGAATTTTATCTCGGCCCTAGGGTGA-AATAGAA----AT--ACCTTACCCCAGTAAAA--ATGC--ATATCCTTATCCAGTGTGCAAAA--AAA
gi|5 : attaatgattctttttctcacaaaccaaacatactgaataattttttaaacttaatttatcctataaattttacaatgactgctttaagatgtttaattatatgaataaagtcatatattttatacatactacgtcatctagatggttcaaAGTTA------TCCCAAGGGACA-CAGTTTTTTC-TTCACAATGGTATAC--CCCA-TAA-AAGGTACT-------------------AAATGTGTGA-----TT-TTTT---AA-G-CTTTTTA-TTCCGG--T--CT--------AG----TTTTGT-----T--------A--GTA-GCGCAT-GGTTACCAA-G-GTATTTGTGAATAAATATGTCATA-------GCGCAA-G-----------------TTATT---AATGAATGA-------ATACAACATATcat
gi|6 : tCCGAGAGAAGG-AATCTTCCA-CCCGTACGG--AAAA--CCCAATGA-AAGAT----TTTCTTGCAAACAACCCTAACAATTTGAC----TT-TTTT---AACG-AATTTGA-TTTTGG--T--AT--------AA----TTTT-------T--------ACAGTA-GCGCA---GATACCAT-AAGTATTTTTTAATGAATACGTCAAA-------GCGCGA-A-----------------ATATT---TAAGAATGA-------ATAg
gi|7 : tTTTTCTTGCATACAACTGTTACTGTGTGA-----TT-TTA----AA-G-ATATTTAATTCTGG--T--CTA-------TA----TTTTA------T--------A--GTA-GTGCAA-TGATACCAT-A-ATATTTATTCATGAATACGTCATGACGTTATGCGCGA-GGAGGTTAGGATAAAAGTATGTCAGGTATTAATGA-------ATG-AACATGTCATATGGCATTAAt
gi|8 : AATAGTTA------TCCCGAGGAACG-CAATTTTTTAATCAGCACCG--AAAC--CCCC-TTTTAAGAAACTTTTTCTTGTTTACAACCCTAACTGTGTGAT----TT-TTTT---AA-G-ATTTTAA-TTCTGG--T--CTA-------TG----TTTTA------T--------A--GTA-GTGGGT-GGTTACCAT-
gi|9 : G--AAAA--CCCA-TGA-AAGATACATATTCTTGCATACGACAC-AA--GTGTGA------T-TTTT---AA-C-ATTTTTA-TTTTGG--TCGAT--------TT----TTTT-------TTTTTAA--A--GGA-GTGCAT-GAATACCAT-A-