lowQualScore : 1 33 1 1 1 1111 2222 11111111111111111 222 111 1 22 222 11 111 11111 1 22222 99999999999999999999999999999999999999999999999999999999999999999999999 111111111111111111 222 2222222222222 1 66666666666666666 88888888888888888888888888888888888888888888888888 1111111 44444444444444444444444444 111 111 1 1 777777777777777777777777777
lowQualScore : 7 6 44 3 0 5 6 1 0000 6 1111 99999999999999999 888 555 555 777 5 6 2 0 3 77 000 0 11 111 8 66666 66 0 4 8 2 4 22222 6 6 77777777777777777777777777777777777777777777777777777777777777777777777 33 5555 000000000000000000 5 444 4444444444444 4 11111111111111111 33 2 2 5 2 6666 88888888888888888888888888888888888888888888888888 1 888 4 8 4444444 88888888888888888888888888 444 4 2 777 7 6 4 555555555555555555555555555 6
lowQualScore : . . .. . . . . . .... . .... ................. ... ... ... ... . . . . . .. ... . .. ... . ..... .. . . . . . ..... . . ....................................................................... .. .... .................. . ... ............. . ................. .. . . . . .... .................................................. . ... . . ....... .......................... ... . . ... . . . ........................... .
lowQualScore : 0 0 00 0 0 0 5 0 6666 0 2222 66666666666666666 555 444 444 555 0 3 9 4 1 55 333 2 11 000 0 33333 33 1 4 0 0 2 77777 7 2 11111111111111111111111111111111111111111111111111111111111111111111111 22 0000 222222222222222222 3 111 1111111111111 4 00000000000000000 44 5 5 1 9 1111 33333333333333333333333333333333333333333333333333 6 000 0 0 4444444 88888888888888888888888888 000 7 7 555 3 8 1 444444444444444444444444444 0
consensus : NNNCCATGGGTCGAAGACCCGGAGGGCATATAGTGTTTGAAC----TGTCCGT----CCGAATATA------------CA-T-ATGTACCTTGTTGGCCTCAACTC---C---T---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCAT-CACCAT-CATCTGAACAAGCGCATATCGTCAG-GA---TT-TT----CGG-CCA-GATTATTA-TT-AAGGAGTTATG--CCCCCT-TTT-TCC--------GA-C-------AT-A----A----------T----------AT-----A------CA------T--A----C--------CT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGA-TTCTAATCAAACTTGCTATACATCATCA--CCAT-CATCTGAAC-AA--G-CGCA-TATCG-TCAG----GA--T-TTTTT-----CA-N-CAA----G------AT--T--TA--AG-AG-GAGTTATG-C-C-CC-TTTTTCT-------GAC-T-AAAAAN-TATTTCAT-------ATACA-T-ATGTACC-TTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCT---ATAC--ATCGTCACT---GGACATATTTC
Reference ( gi|1 ) : CTACCTTGAGTCATTGACTCGAAGGACAAATAATGTTTGAAC----TGTCCAT----CCGAATATA------------CA-A-ATGTACCTTTTTGGCCTCAACTC---C---T---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTAT-CACCAT-CATCGTAACAAGTGAATATCATCAA-GA---TT-TC----CAG-CCA-GATTATTA-TT-AAGGAGTTGTG--CTGCCT-TTT-TCT--------GG-C-------AT-A----A----------T----------A------A------CA------T--A----C--------CT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCA-TTCAGATCAAACTTGGTATACATCATCACCCCAA-CATCTTAAA-AA--G-CACA-TGTCA-TCAG----GA--C-TTTTT-----CA-T-CAA----A------AT--T--TA--AG-AG-GAGTTATG-T-C-CC-TTTTTCT-------GAC-T-AACAAT-TATTTGAT-------TTACA-G-ATGTATC-TTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAA---GC----ATGT--ATTGTCACTGGGGGACACATTTCTGGTTTC
gi|10 : CCATGGGTCAAAGATCCGTAGGTCG--TAGTGTTTGGACCGGCTGTCTGT----CCGAATATA------------CT-T-ATGTAACTTGT-GGCCTAAACTT---C---TCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGT-CACGAT-CATCAGAACAAGCACATTTCGTCAG-GA---TT-TT----CTGACAA-GATTATTA-
gi|4 : gcccTGGGTCGAAGACCCAGAGGCCATATAGCATGTGGAC----TGTCTGTTTGTCCGAATATA------------CATA-ATGTACATTGT-GGCCTCAACTC---C---T---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTAT-CACCAT-CATCTGAACAAGCGCATATCATCAG-GA---TT-TT----CAG-ACAAGGTTATCA-TTTAAGGAGTTATG--TCCCCT-TTT-CCT--------GA-C-------TT-A----A----------A----------A------AATATTTCACGTATGT--A----C--------CT--------TGCGGCCTTGGCTTCTCCTACAGTTCCTA-----------ATCAAACTTGCCATACATCATCA---CAATCACCTGGAC-AA--G-CGCA-TATTG-TCAG----
gi|8 : caGTCAAAGACCAGCAGGGCATAAAGTGTTTGAAC----TGTCTGTTTGTCCAAATATA------------CA-ACATG-AACTTTGTGGCCTCAACTC---C---T---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATACAT-----------CATCTGAACAAGCACATAAAATTGG-GAT--TT-TT----CAC-CCT-GATGA--G-TT-----AGTTGTG--CTCCCA-TTT-tggaggcatccgtgtactaa
gi|2 : cccacagGACCCGGATGGCATATTGTATTTGAAC----TGTCCGT----CTAAATATATGTCCGTCCGTCCG-A-ATATACATAT---GCCTTAACTT---C---TCTTACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCAT-GACCAT-CATCTAAACAAACGTATATCATCAG-GA---TT-TTA---CGA-CAA-GATTATTATTT-AAGTAGGTATG--CCTCCT-TTT-CCT--------GA-C-------AT-----------------------------------A------TG------T--T----C--------CT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGG-TTCTAATCAAACTTGCTATACATCATCAT------CATC------AA--GCCGCA-TATTA-TCAG----
gi|16 : ccacgggtagaaCTCCGAGG-CAAATAATGTTTGAAC----TGTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|15 : cccagtgtcaaagacGGCATATAATGTTTGAAC----TATCCGT----ttttggtcaattgtac
gi|6 : tTGTTAGAA-----TGTCCGT----CCATACATA------------CA-C-AAGTACCTTGT-GGCCTTAACTC---C---T---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCAT-CAC------TTG-AACAAGGGCATATCATCAG-GGGTTTT-TT----TGT-CCA-CATTATTA-TTAAAGGAGTAACG--C-ACCC-TTT-TCT--------GA-CTTAAAAAAT-ATTTCA----------T----------ATACAG-A------CA------T--A----C--------CT--------TGTGGCCTCAACTCCACCTACAGTTTTCATCTttatctgtctgtcccaccgaccgaatctacatatg
gi|13 : tatatggacagttgaaaaagacttaaatatacattC----TATCTGT----CTGAATATA------------CA-T-TTGCACC-TTGTAGCCTCAACTC---C---T---ga
gi|3 : ccccacaggtcgaagaccctgagggcatgtagtgtgcgtcctgtacgtctgtctacatccatTCCGT----CAGAATATA------------CA-T-ATATATCTTGT-GGCCTTAACTC---C---T---CC--------TCCAAATCTGATCAAAATTTCTATACATT-----------ATCGGAACAAGCACATTTCGTCAGCAA---TT-TC----CAA-CAA-TATTATTATTT-AAGGATTTATG--CC-CCT-TCT-TCT--------GA-C-------TTAA----A----------T----------ATAGTTTA------TA------T--A----CAGATGTAGNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNTAATCTTGATATCCATCATTG--CCAT-CGCCTTAAC-AACCG-CATATTGTAAGTCGG----GA--C-cc
gi|9 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaATATA------------CA-T-CTGTACCTTGT-GGCCTCAACTC---C---atccgtgtaccaattggacacatttcttgttt
gi|7 : tactttatgacctgaactcctacagtttacatatgattcgaatcaaactttctatacatcatcaccatcatctgaacaagtgcatatcgtcaggattgtctgcccacattattgaaggagttatgccccctttttctgactaaaaaatatttcATATT------------CA-T-ACATACCTTGTTG-CCTCAACTC---C---T---ACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCAT-CACCAT-CATCTGAAGAAGTGCATA
gi|11 : atcaccatcgtctgatcaagcacatatcatcaggattttttttcagccagattattattcacgagttgagcccttttttttttattcagaaataattttcATATA------------CC-T-ATGT-TCACTGTGGCCTCAAATC---C---TCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCAT-CACCAT-CACCTGAACAAc
gi|12 : atttaaggagttctgtcccctttttctgacttaacatatctcATATA------------CA-T-ATAAACATTGC-GGCC-CAACTCTTCC---T---ACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCAC-CACCCTCCCTTG-AACAATCACATATTGTCAtcgcatgttgtaaatgggggcaatgatgtaataattggac
gi|5 : aattgtgctcatttttctgacttaaaaacagttcTA------------CA-G-ATGCACCTTGT-GGCCTCAACTC---CTCCT---ACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGT-CAgtggggccatccgtgtactaactggacacatttctt
gi|9 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagatCTTTATGACCTGAACTC---C---T---ACAGTTTACATATGATTCGAATCAAACTTTCTATACATCAT-CACCAT-CATCTGAACAAGTGCATATCGTCAG-GA---TTGTC----TGC-CCA-CATTATTG----AAGGAGTTATG--CCCCCT-TTT-TCT--------GA-CTAAAAA-AT-ATTTCA----------T----------AT-----A------CATCTG--T--A----C--------CT--------TGTGGCCTCAACTCttggacatatttcatgtt
gi|14 : taATTCTAATAAAACTTGCTATAAACCATAAACCTT-CATCTGAACAAGCACATATCTTCAT-GA---TT-Tc
gi|5 : taaacatatgtacattgtggcctcaTACATCGT-CACCAT-C-------CA------TACTGTCAG-GA---TTATT----CAG-TTA-GATTATTA-TTTAAGGAGTTATT--CCCCCT-TTT-TCG--------GA-C-------TT-A----A---------------------A------A------AA------T--A----atcactca
gi|7 : AT-CACCAT-CGTCTGATCAAGCACATATCATCAG-GA---TT-TTTTTTCAG-CCA-GATTATTA-TT-CACGAGTTGAG--C--CCT-TTT-TTTTTTATTCAGA-A-------AT-A----A----------TTTTCATATTCAT-----A------CA------T--A----C--------CT--------TGTTGCCTCAACTC---CTACAGTTTTCATCTGA-TTCTAATTAAACTTACTATACATCATCA--CCAT-CATCTGAAG-AA--G-TGCA-Taagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|11 : -TT-AAGGAGTTCTG--TCCCCT-TTT-TCT--------GA-C-------TT-A----A----------C----------ATATCTCA------TA------T--A----C--------CTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAA-TTCTTATCAAACTTGCTATACATCATCA--CCAT-CACCTGAAC-AA--T-CGCA-TGTac
gi|8 : atT-AAAGTGTT-TGAACTGTCTGTTTGTCC--------AA---------AT-AT---A----------C----------A------A------CA------TGAA----C--------TT--------TGTGGCCTCAACTC---CTACAGTTCTCATCAGA-TTCTAATTAAAATTTCTATACATCATC------------TGAAC-AA--G-CACA-TAAAA-TTGG----GA----TTTTT-----CA-C-C--------------C--T--GA--TG-AGTTAGTTGTGCT-C-CC-ATTTtgtaaatgggggcaatgatgtaataattggac
gi|12 : cccacaggtcaaagaccagcagggcaAATTGTG--CT-CAT-TTT-TCT--------GA-C-------TT-A----AAAACAGTTCAT----------AT-----A------CA------T--ATAAAC--------AT--------TGCGGCCC-AACTCTTCCTACAGTTTTCATCTGA-TTCTAATCAATTTTGCTATACATCACCACCCT---C-CCTTGAACAA--T-CACA-TATTG-TCAG----
gi|4 : TGTGGACTGTCTGTTTGTCC--------GAAT-------AT-AC---A----------T----------A------A------TG------T--A----C--------AT--------TGTGGCCTCAACTC---CTACATCTTTCATCTGA-TTCTAATCAAACTTGCTATGCATTATCA--CCAT-CATCTGAAC-AA--G-CGCA-TATCA-TCAG----GA-----TTTT-----CA-GACAA----GGTTATCAT--T--TA-----AG-GAGTTATG-TCC-CC-TTTTCCT-------GACTT-AAAAAA-TAT----T-------TCACG-T-ATGTACC-TTGCGGCCTTGGCTTCTCCTACAGTtggggccatccgtgtactaactggacacatttctt
gi|3 : catgggtcgaagacccagaggccatatagca-TCC--------GT-C-------AG-A----A----------T----------ATACAT-A------TA------T--A----T--------CT--------TGTGGCCTTAACTCCTCCTCCAA-----ATCT-------GATCAAAATTTCTATACATTATCGG---AA-CA---------A--G-CACA-TTTCG-TCAG----CA--A-TTTC------CA-A-CAATATTATT----AT--T--TA--AG----GATTTATG-C-C-CC-TTCTTCT-------GAC-T-TA-AATATAGTTTAT-------ATACA-G-ATGTAtcctaatcaaacttgccatacatcatcacaatcacctggacaagcgcatattgtcagtggaggcatccgtgtactaa
gi|6 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgccca-C-------AT-AC---A----------T----------AC-----A------CAAG----T--A----C--------CT--------TGTGGCCTTAACTC---CTACAGTTTTCATCTGA-TTGTAATCAAATTTGCTGTACATCATCACTTGAA-CA---------A--G-GGCA-TATCA-TCAG----GGG-T-TTTTT-----TG-T-CCA----C------AT--TATTATTAA-AG-GAGTAACG-C-A-CC-CTTTTCT-------GAC-TTAAAAAA-TATTTCAT-------ATACA-G-ACATACC-TTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatcttgatatccatcattgccatcgccttaacaaccgcatattgtaagtcgggacatccgtgtaccaattggacacatttcttgttt
gi|10 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtc-------AT-A----C----------T----------T------A------TG------T--A----A--------CT--------TGTGGCCTAAACTTCTCTTACAGTTTTCATCCAA-TTTTAATAAAACTTGCTATACATCGTCA--CGAT-CATCAGAAC-AA--G-CACA-TTTCG-TCAG----GA--T-TTTCT-----GA---CAA----G------AT--T--
gi|2 : gcccccatgggtcaaagatccgtaggtcgtagtgtttggaccggctgtctgtccgaat-A----A----------T----------AT-----A------CA------T--A----T----------------------GCCTTAACTTCTCTTACAGTTTTCATCCGA-TTCTAATCAAACTTGCTATAGATCATGA--CCAT-CATCTAAAC-AA--A-CGTA-TATCA-TCAG----GA----TTTTA-----CG-A-CAA----GATTATTAT--T--TA--AGTAG-G---TATG-C-CTCC-TTTTCCT-------GAC-------AT------------------------ATGTTCC-TTGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAA---atta
gi|9 : ccacgggtagaagacccggatggcatattgtatttgaactgtccgtctaaatatatgtccgtccgtccg------T--A----C--------TT--------TATGACCTGAACTC---CTACAGTTTACATATGA-TTCGAATCAAACTTTCTATACATCATCACC--AT-CATCTGAAC-AA--G-TGCA-TATCG-TCAG----GA--T-TGTCTGCCCACA-T-TA----------------T--TG--A--AG-GAGTTATG-C-C-CCCTTTTTCT-------GAC-T-AAAAAA-TATTTCAT-------ATACA-T-CTGTACC-TTGTGGCCTCAACTCCcttgctatacatcatcatcatcaagccgcatattatcagtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|5 : --A----C--------CT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTCA-TTCTAATCAAAACTGCTATACATCGTCA
gi|14 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcTACA-TTGTGGCCTCAATTCTAATAAAACTTGCTATAAACCATAAACCTT--CATCTGAAC-AA--G-CACA-TATCT-TCAT----GA----TTTAT-----CACT-CAttggacatatttcatgtt
gi|7 : taaacatatgATCACC--AT-CGTCTGATC-AA--G-CACA-TATCA-TCAG----GATTT-TTTTT-----CA-G-CCA----G------ATTAT--TAT-TC-AC-GAGTTGAG-C-C-CT-TTTTTTTTTATTCAGA----AATAAT---TTTCAT-------ATTCA-T-ACATACC-TTGTTGCCTCAACTCCTA---CAGTTTTCATCTGATTCTAATTAAA---
gi|5 : -CACCTGAAC-AA--G-CGCA-TATTG-TCAGTGGGGG--CATCTGTG----CA-C---A----A------AT--T----------G-GA--CACA-T-T-TC-TTATTTT-------GAT-T-CAAAAT--ATTTCATATACAGATTACA-G-ATGCACC-TTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAA---ACTGCTATAC--ATCGTCATT---GGACATATTTCcttactatacatcatcaccatcatctgaagaagtgcatac
gi|11 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgtttacatttgtacct------AT--T--TA--AG----GAGTTCTG-T-C-CCCTTTTTCT-------GAC-TTAACA---TATCTCAT-------ATACC-T-ATGT-TCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCT---ATAC--ATCATCACatgtt
gi|12 : AATTGTG-C-T-CA-TTTTTCT-------GAC-T-TAAAAA-CAGTTCAT-------ATACA-T-ATAAACA-TTGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAAcatcacctgaacaatcgcatgttgtaaatgggggcaatgatgtaataattggac
gi|4 : AT-------ATACATA-ATGTACA-TTGTGGCCTCAACTCCTACATC--T-TTCATCTGATTCTAATCAAACTTGCT---ATGC--ATTATCACttttgctatacatcaccaccctcccttgaacaatcacatattgtcagtggggccatccgtgtactaactggacacatttctt
gi|8 : catgggtcgaagacccagaggccatatagcatgtggactgtctgtttgtccgaAT-------ATACA-ACATGAACT-TTGTGGCCTCAACTCCTA---CAGTTCTCATCAGATTCTAATTAAA---catcatctgaacaagcgcatatcatcaggattttcagacaaggttatcatttaaggagttatgtccccttttcctgacttaaaaaatatttcacgtatgtaccttgcggccttggcttctcctacagttcctaatcaaacttgccatacatcatcacaatcacctggacaagcgcatattgtcagtggaggcatccgtgtactaa
gi|3 : cccacaggtcaaagaccagcagggcataaagtgtttgaactgtctgtttgtccaaAT-------ATACA-T-ATATATC-TTGTGGCCTTAACTCCTCCTCCAA-----ATCTGATatttctatacatcatctgaacaagcacataaaattgggatttttcaccctgatgagttagttgtgctcccattt
gi|13 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccatccgtcagaAT-------ATACA-T-TTGCACC-TTGTAGCCTCAACTCCTCCcaaaatttctatacattatcggaacaagcacatttcgtcagcaatttccaacaatattattatttaaggatttatgccccttcttctgacttaaatatagtttatatacagatgtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatcttgatatccatcattgccatcgccttaacaaccgcatattgtaagtcgggacatccgtgtaccaattggacacatttcttgttt
gi|6 : ccccacaggtcgaagaccctgagggcatgtagtgtgcgtcctgtacgtctgtctacatccatctatctgtctgaTACA-C-AAGTACC-TTGTGGCCTTAACTCCTA---CAGTTTTCATCTGATTGTAATCAAATTTGC-----TGTACATCATCACT
gi|14 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtccatacaACA-T-ATGTACA-TTGTGGCCTCAATTCtgaacaagggcatatcatcaggggtttttttgtccacattattattaaaggagtaacgcacccttttctgacttaaaaaatatttcatatacagacataccttgtggcctcaactccacctacagttttcatctga
gi|10 : taa-ATGTAAC-TTGTGGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCT---ATAC--ATCGTCACtaataaaacttgctataaaccataaaccttcatctgaacaagcacatatcttcatgatttatcactca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Unaligned ( gi|19 ): ATCACCTGAACAAGCACATAAAGTCTGGAATTTCTGCCCACATTATCATTGAA
Unaligned ( gi|20 ): CATCATCACCGTCATCAGAACAAGCGCATTTC
Alignments
lowQualScore : 2222222222222 222222222 1111 33333333333333333333 2222 22 11111111 1 111111 7777777777777777777777777777777777777777777777 11111111 111 11111 5555555555555555555555555555 222222 222222222 22 333
lowQualScore : 5 4 0 7777777777777 000000000 0000 66666666666666666666 1111 4 4 3 0 99 99999999 2 3 0 1 1 3 4 4 88888888 2 2 55 0 666666 8 5555555555555555555555555555555555555555555555 88888888 0 0 333 2 55 6 0 5 22222 8 1 4444444444444444444444444444 1 6 6 6 99 444444 444444444 0 44 7 555
lowQualScore : . . . ............. ......... .... .................... .... . . . . .. ........ . . . . . . . . ........ . . .. . ...... . .............................................. ........ . . ... . .. . . . ..... . . ............................ . . . . .. ...... ......... . .. . ...
lowQualScore : 7 5 4 5555555555555 000000000 6666 11111111111111111111 2222 4 4 9 1 99 22222222 2 6 3 3 4 6 0 0 88888888 9 0 22 2 444444 6 0000000000000000000000000000000000000000000000 11111111 5 2 111 8 55 7 7 0 55555 0 0 8888888888888888888888888888 0 7 7 7 22 222222 222222222 8 33 3 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-------------TTG---------AAC----TGT--------------------CCGT----CCGAATATACA-T-ATGTACCTTGTTGGCCTCAACTC---CT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCNAGATTATTA-TT-AAGGAGTTGTGCCCCCTTTTT------CTGAC----ATA------AT----------A-------TAC-----A----TACCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCA-G-----G-ATTTTTT--CGNCAANAT--T------TA--AGAGGAGTTACG-CCCC-TTTTTCTGAC-T--AAAAAA-----TATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAA-CTGCTATACATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCATGGGTCGAAGACC-CGGAGGGCATATAGTGT-------------TTG---------AAC----TGT--------------------CCGT----CCGAATATACA-T-ATGTACCTTGTTGGCCTCAACTC---CT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCCAGATTATTA-TT-AAGGAGTTATGCCCCCTTTTT------CCGAC----ATA------AT----------A-------TAC-----A----TACCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCATCTGAACAAGCGCATATCGTCA-G-----G-ATTTTTT--CANCAAGAT--T------TA--AGAGGAGTTATG-CCCC-TTTTTCTGAC-T--AAAAAN-----TATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCGTCACT---GGACATATTTC
gi|1 : CCTTGAGTCATTGACT-CGAAGGACAAATAATGT-------------TTG---------AAC----TGT--------------------CCAT----CCGAATATACA-A-ATGTACCTTTTTGGCCTCAACTC---CT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GA-TT-TC----C-AGCCAGATTATTA-TT-AAGGAGTTGTGCTGCCTTTTT------CTGGC----ATA------AT----------A--------AC-----A----TACCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCA-G-----G-ACTTTTT--CATCAAAAT--T------TA--AGAGGAGTTATG-TCCC-TTTTTCTGAC-T--AACAAT-----TATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAA---GC-ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-------------TTG---------GACCGGCTGT--------------------CTGT----CCGAATATACT-T-ATGTAACTTGT-GGCCTAAACTT---CTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GA-TT-TT----CTGACAAGATTATTA-tggtttc
gi|11 : gccc-TT-AAGGAGTTCTGTCCCCTTTTT------CTGAC----TTA------AC----------A-------TATCTCATA----TACCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : atAATTGTG-CTCA-TTTTTCTGAC-T--TAAAAA-----CAGTTCATATACA---TA----TAAACATTGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCACaaatgggggcaatgatgtaataattggac
gi|12 : ATATACA-T-ATAAACATTGC-GGCC-CAACTCTTCCT---ACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA-CCCTCCCTTGAACAATCACATATTGTCAG-cctcccttgaacaatcacatattgtcagtggggccatccgtgtactaactggacacatttctt
gi|13 : aattgtgctcatttttctgacttaaaaacagttcCCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTCTGTCTACATCCATC----TAT--------------------CTGT----CTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTC---CT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA--------------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GA-TT-Tcc
gi|15 : GGCATATAATGT-------------TTG---------AAC----TAT--------------------CCGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-------------TTG---------AAC----TGT--------------------Cttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG-GA-AT-TT----CTGCCCACATTATCA-TT-GAttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-------------TTG---------AAC----TGTCCGTCTAAATATATGTCCGTCCGT----CCGAATATACA-T-ATG--CCTTA---ACTTC---TC---TT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GA-TT-TTA---C-GACAAGATTATTATTT-AAGTAGGTATGCCTCCTTTTC------CTGAC----AT-------AT----------G-------T------------T-CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCA-G-----a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------CCGT----CAGAATATACA-T-ATATATCTTG-TGGCCTTAACTC---C-----------TCCTCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAA-TT-TC----C-AACAATATTATTATTT-AAGGATTTATG-CCCCTTCTT------CTGACTTAAATATAGTTTAT----------A-------TAC-----AGATGTAGNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAA-G-----
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-------------GTG---------GAC----TGT--------------------CTGTTTGTCCGAATATACA-TAATGTACATTG-TGGCCTCAACTC---CT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GA-TT-TT----CAGACAAGGTTATCATTT-AAGGAGTTATGTCCCCTTTTC------CTGACTTAAAAA------AT----------ATTTCACGTAT-----G----TACCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCA-G-----tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA-CCATC-------------CATACTGTCAG-GA-TTATT----C-AGTTAGATTATTA-TTTAAGGAGTTATTCCCCCTTTTT------CGGAC----TTA------Atggaggcatccgtgtactaa
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCA-G-----G-ATTATT---CAGTTAGAT--TATTATTTA--AG--GAGTTATT-CCCCCTTTTTCGGAC-TTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTaaaataaagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCA-GTGGGGGCATCTGTG--CA-CAA-AT--T-------------GGA--CACA-TTTC-TTATTTTGAT-T--CAAAA------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----AT----------A-------CAC-----AAG--TACCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--C------TTGAACAAGGGCATATCATCAGG-----G-GTTTTTT--TGTCCACATTAT------TATTAAAGGAGTAACG-CACC-CTTTTCTGACTT--AAAAAA-----TATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GA-TT-TTTTTTC-AGCCAGATTATTA-TT-CACGAGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------ATTTTCATATTCA-------TAC-----A----TACCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-------------TTG---------AAC----TGT--------------------CTGTTTGTCCAAATATACAAC-ATGAACTTTGT-GGCCTCAACTC---CT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTT-TT----C-ACCCTGATGA--G-TT-----AGTTGTGCTCCCATTTc
gi|9 : c----TACTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCA-G-----G-ATTGTCTGCCCACATTAT--T------GA----AGGAGTTATGCCCCC-TTTTTCTGAC-T--AAAAAA-----TATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 11111111 1 111111 77777777777777777777777777777777777777777777777777777777 11111111 11111 444444444444444444444444 11111 11 222222 333333333 2 11 1 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 8888 0 1 1 4 2 1 0 4 4 4 88888888 1 2 55 444444 77777777777777777777777777777777777777777777777777777777 9999 66666666 88 1 55 1 1 1 4 11111 8 1 444444444444444444444444 88888 8 11 666666 1 222222222 4 0 88 5 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. .... . . . . . . . . . . ........ . . .. ...... ........................................................ .... ........ .. . .. . . . . ..... . . ........................ ..... . .. ...... . ......... . . .. . ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 9999 7 7 1 0 3 0 5 0 0 0 88888888 0 0 22 444444 66666666666666666666666666666666666666666666666666666666 4444 11111111 99 3 00 2 4 2 4 11111 0 0 222222222222222222222222 66666 0 00 000000 4 666666666 0 0 00 5 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCNAGATTATTA-TT-AAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCA-G-----G-ATTTTTTCGTCAAN-----ATTATTA--AGAGGAGTTA--CG-CCCCTTTTTCTGAC-T--AAAAA-----ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAACTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCNAGATTATTA-TT-AAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCA-G-----G-ATTTTTTCGNCAAN-----AT--TTA--AGAGGAGTTA--CG-CCCCTTTTTCTGAC-T--AAAAA-----ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATC-AAACTGCTATACATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GA-TT-TC----C-AGCCAGATTATTA-TT-AAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCA-G-----G-ACTTTTTCATCAAA-----AT--TTA--AGAGGAGTTA--TG-TCCCTTTTTCTGAC-T--AACAA-----TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATC-AAA--GC-ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GA-TT-TT----CTGACAAGATTATTA-tggtttc
gi|11 : gccc-TT-AAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : atAATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCA-G-----aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GA-TT-Tcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG-GA-AT-TT----CTGCCCACATTATCA-TT-GAttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GA-TT-TTA---C-GACAAGATTATTATTT-AAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCA-G-----a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTG-TGGCCTTAACTCC-----------TCCTCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAA-TT-TC----C-AACAATATTATTATTT-AAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAA-G-----
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GA-TT-TT----CAGACAAGGTTATCATTT-AAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCA-G-----tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA-CCATC-------------CATACTGTCAG-GA-TTATT----C-AGTTAGATTATTA-TTTAAGGAGTTATTCCCCCTTTTTCG------GAC----TTA------A----------tggaggcatccgtgtactaa
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCA-G-----G-ATTATTCAGTTAGATTATTAT--TTA--AG--GAGTTATTC--CCCCTTTTTCGGAC-TTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTaaaataaagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCA-GTGGGGGCATCTGTGC-ACAA------AT--T-------GGA--CA--CA-TTTCTTATTTTGAT-T--CAAAA------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACAT--------CATCACTTGAACAAGGGCATATCATCAGG-----G-GTTTTTTTGTCCAC-----ATTATTATTAAAGGAGTAA--CG-CACCCTTTTCTGACTT--AAAAA-----ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GA-TT-TTTTTTC-AGCCAGATTATTA-TT-CACGAGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTT-TT----C-ACCCTGATGA--G-TT-----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCA-G-----G-ATTGTCT-GCCCAC-----ATTATTG--A-AGGAGTTA--TGCCCCCTTTTTCTGAC-T--AAAAA-----ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 11111111 1 111111 77777777777777777777777777777777777777777777777777777777 11111111 11111 111 1111111 444444 11111 11 222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 8888 0 1 1 4 2 1 0 4 4 4 88888888 1 2 55 444444 77777777777777777777777777777777777777777777777777777777 9999 66666666 88 1 55 2 44 1 1 11111 000 1 1111111 5 222222 88888 99 666666 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. .... . . . . . . . . . . ........ . . .. ...... ........................................................ .... ........ .. . .. . .. . . ..... ... . ....... . ...... ..... .. ...... . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 9999 7 7 1 0 3 0 5 0 0 0 88888888 0 0 22 444444 66666666666666666666666666666666666666666666666666666666 4444 11111111 99 3 00 1 66 4 2 11111 000 0 8888888 6 888888 66666 00 000000 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCNAGATTATTA-TT-AAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG-----G-A-TTTTTTCGTCAANATTATTATT-A-AGGAGTTA--CG-CCCCTTTTTCTGACTT-AAAAA-----ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TT-TT----C-GGCNAGATTATTA-TT-AAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG-----G-A-TTTTTTCGTCAANATTATTA---AGAGGAGTTA--CG-CCCCTTTTTCTGACT--AAAAA-----ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAACTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GA-TT-TC----C-AGCCAGATTATTA-TT-AAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG-----G-A-CTTTTTCATCAAAAT--TTA---AGAGGAGTTA--TG-TCCCTTTTTCTGACT--AACAA-----TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GA-TT-TT----CTGACAAGATTATTA-tggtttc
gi|11 : gccc-TT-AAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : atAATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG-----aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GA-TT-Tcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG-GA-AT-TT----CTGCCCACATTATCA-TT-GAttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GA-TT-TTA---C-GACAAGATTATTATTT-AAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG-----a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTG-TGGCCTTAACTCC-----------TCCTCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAA-TT-TC----C-AACAATATTATTATTT-AAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG-----
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GA-TT-TT----CAGACAAGGTTATCATTT-AAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG-----tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA-CCATC-------------CATACTGTCAG-GA-TTATT----C-AGTTAGATTATTA-TTTAAGGAGTTATTCCCCCTTTTTCG------GAC----TTA------A----------tggaggcatccgtgtactaa
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG-----G-A-TTATTCAGTTA-GATTATTATTTA-AGGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTaaaataaagatatttcgtttacatttgtacctcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGGCA-TCTGTGCA-CAA----ATT-------GGA--CA--CA-TTTCTTATTTTGATT--CAAAA------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG-----G-GGTTTTTTTGTCCACATTATTATT-AAAGGAGTAA--CG-CACCCTTTTCTGACTT-AAAAA-----ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GA-TT-TTTTTTC-AGCCAGATTATTA-TT-CACGAGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTT-TT----C-ACCCTGATGA--G-TT-----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG-----G-A-TTGTCT-GCCCACATTATTG---A-AGGAGTTA--TGCCCCCTTTTTCTGACT--AAAAA-----ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 22222222 1 111111 88888888888888888888888888888888888888888888888888888888 11111111 11111 1111111 111111 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 8888 0 1 2 4 2 3 5 5 11111111 1 5 1 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 00000 666 5555555 3 1 999999 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. .... . . . . . . . . ........ . . . . ...... ........................................................ .... ........ .. . .. . .. . . ..... ... ....... . . ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 9999 7 7 5 4 1 1 0 0 11111111 0 0 4 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 00000 888 3333333 2 5 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG-----G-A-TTTTTTCGTCNACATTATTATT-A--A-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GA-TTTT----C-GGCNAGATTATTA-TTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG-----G-A-TTTTTTCGTCAANATTATTATT-A--A-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GA-TTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG-----G-A-CTTTTTCATCAAAAT-----TT-AAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GA-TTTT----CTGACAAGATTATTA-tggtttc
gi|11 : gccc-TTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : atAATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG-----aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GA-TTTcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG-----G-A-ATTTCT-GCCCACATTATCATT-G--A-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GA-TTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG-----a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTG-TGGCCTTAACTCC-----------TCCTCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAA-TTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG-----
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GA-TTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG-----tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG-----G-A-TTATTCAGTTA-GATTATTATTTA--A-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGGCA-TCTGTGCA-CAA-------ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG-----G-GGTTTTTTTGTCCACATTATTATT-A--AAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GA-TTTTTTTTC-AGCCAGATTATTA-TTCACGAGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTTT----C-ACCCTGATGA--G-TT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG-----G-A-TTGTCT-GCCCACATTATTG---A--A-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 2222222 111111 88888888888888888888888888888888888888888888888888888888 11111111 11 111111 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 888 22 1 2 4 2 3 5 5555555 1 4 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 8888 77 99 33 3 44 999999 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. ... .. . . . . . . ....... . . . ...... ........................................................ .... ........ .. . .. . .. . . .... .. .. .. . .. ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 888 11 7 5 4 1 1 0 6666666 4 3 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 5555 00 33 55 2 77 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG----GA-TTTTTT-GTCCACATTATTATT-A--A-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG----GA-TTTTTTCGTCNACATTATTATT-A--A-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GATTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG----GA-CTTTTTCATCAAAAT-----TT-AAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GATTTT----CTGACAAGATTATTAtggtttc
gi|11 : gcccATTTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : AATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG----aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GATTTcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG----GA-ATTTCT-GCCCACATTATCATT-G--A-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GATTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG----a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTGT-GGCCTTAACTCCT---CC--------TCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAATTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG----
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GATTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG----tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG----GA-TTATTCAGT-TAGATTATTATTTA--A-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGG-CATCT--GTGCACA--A--ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG----GGGTTTTTTTGTCCACATTATTATT-A--AAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GATTTTTTTTC-AGCCAGATTATTATTCACG-AGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTT----T---CACCCTGATGAGTT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG----GA-TTGTCT-GCCCACATTATTG---A--A-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 2222222 111111 88888888888888888888888888888888888888888888888888888888 11111111 111 222222 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 888 22 1 2 4 2 3 5 5555555 1 4 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 777 111 3 666 55 444444 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. ... .. . . . . . . ....... . . . ...... ........................................................ .... ........ .. . .. . .. . . ... ... . ... .. ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 888 11 7 5 4 1 1 0 6666666 4 3 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 000 000 7 000 33 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GA--NTNTCTGCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GA--TTTTTTGTCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GATTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG---GA--CTTTTT-----CATCAAAATTTAAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GATTTT----CTGACAAGATTATTAtggtttc
gi|11 : gcccATTTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : AATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG---aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GATTTcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG---GA--ATTTCTGCCCACATTATCATT---GA-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GATTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG---a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTGT-GGCCTTAACTCCT---CC--------TCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAATTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG---
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GATTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG---tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG---GA--TTATTCAGTTAGATTATTATTT--AA-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGG--GCATCTGTGCACA--A--ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG---GGGTTTTTTTGTCCACATTATTATT---AAAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GATTTTTTTTC-AGCCAGATTATTATTCACG-AGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTT----T---CACCCTGATGAGTT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG---GA--TTGTCTGCCCACATTATTG-----AA-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 2222222 111111 88888888888888888888888888888888888888888888888888888888 11111111 11111 222222 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 888 22 1 2 4 2 3 5 5555555 1 4 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 777 1 1 44444 55 444444 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. ... .. . . . . . . ....... . . . ...... ........................................................ .... ........ .. . .. . .. . . ... . . ..... .. ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 888 11 7 5 4 1 1 0 6666666 4 3 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 000 0 0 88888 33 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GATTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG---GACTTTTT-------CATCAAAATTTAAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GATTTT----CTGACAAGATTATTAtggtttc
gi|11 : gcccATTTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : AATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG---aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GATTTcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG---GAATTTCT--GCCCACATTATCATT---GA-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GATTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG---a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTGT-GGCCTTAACTCCT---CC--------TCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAATTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG---
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GATTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG---tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG---GATTATTC--AGTTAGATTATTATTT--AA-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGGCATCT--GTGCACA--A--ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG---GGGTTTTTTTGTCCACATTATTATT---AAAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GATTTTTTTTC-AGCCAGATTATTATTCACG-AGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTT----T---CACCCTGATGAGTT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG---GATTGTCT--GCCCACATTATTG-----AA-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 11111 1111 44444444444444444444444444444444444444444444 22 2222222 111111 88888888888888888888888888888888888888888888888888888888 11111111 11111 222222 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 22222 888 0000 77777777777777777777777777777777777777777777 666 2 77 888 22 1 2 4 2 3 5 5555555 1 4 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 777 1 1 44444 55 444444 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ..... ... .... ............................................ ... . .. ... .. . . . . . . ....... . . . ...... ........................................................ .... ........ .. . .. . .. . . ... . . ..... .. ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 55555 888 6666 33333333333333333333333333333333333333333333 111 2 99 888 11 7 5 4 1 1 0 6666666 4 3 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 000 0 0 88888 33 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-----TTGAA---C----TGT--------------------C--CAT----CC------------GAATATACA-A-ATGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GATTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG---GACTTTTT-------CATCAAAATTTAAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-----TTGGA---CCGGCTGT--------------------C--TGT----CC------------GAATATACT-T-ATGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GATTTT----CTGACAAGATTATTAtggtttc
gi|11 : gcccATTTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : AATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG---aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTC----TGT--------------------CTACAT----CCATCTATCTGTCTGAATATACA-T-TTGCACCTTG-TAGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-T-ATGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GATTTcc
gi|15 : GGCATATAATGT-----TTGAA---C----TAT--------------------C--CGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-----TTGAA---C----TGT--------------------C--ttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG---GAATTTCT--GCCCACATTATCATT---GA-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-----TTGAA---C----TGTCCGTCTAAATATATGTCCGTC--CGT----CC------------GAATATACA-T-ATG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GATTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG---a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------C--CGT----CA------------GAATATACA-T-ATATATCTTGT-GGCCTTAACTCCT---CC--------TCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAATTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG---
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-----GTGGA---C----TGT--------------------C--TGTTTGTCC------------GAATATACA-TAATGTACATTG-TGGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GATTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG---tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG---GATTATTC--AGTTAGATTATTATTT--AA-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGGCATCT--GTGCACA--A--ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG---GGGTTTTTTTGTCCACATTATTATT---AAAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GATTTTTTTTC-AGCCAGATTATTATTCACG-AGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-----TTGAA---C----TGT--------------------C--TGTTTGTCC------------AAATATACAAC-ATGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTT----T---CACCCTGATGAGTT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG---GATTGTCT--GCCCACATTATTG-----AA-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
blockSeqs : T T GCGTC CGT CGGC CCGTCTAAATATATGTCCGTCCGTCC TA T T CTT AG C C A A G C TTTTCA T G TATTCA TTAAATATAGTTTATATACAGATG TAAA ATGTTCAC TC A . A AC T TGG A T TTGTC TC TAA TTC T AATAAAGA T GATTACAGA A TGCT .
blockSeqs : . G . . . CTACATCCATCTATCTGTCT AC C T . AG C A . T T . CTG T T . TTAAAAAATATTTCACGTATG . . TC C . C CC T . T A GCC TT AAA TGC T AA A TT
blockSeqs : . G . . . CTGTTTGTCC T T T . AT C G . T A . ACG T G . TTAAAAACAGTTCATATACA . . TT C . A AC A . G A AGT TT GA CA T AA A GA
blockSeqs : . G . . . CTGTTTGTCC T T T . AG T C . A G . CAG T G . ATAATTTTCATATTCATACA . . NN N . A GC T . G T GTG TT AA CG . . A TC
blockSeqs : . C . . . CTGTCC T T T . . A C . T A . CA T . . TTAACATATCTCATA . . TC C . A AC T . T G GCC . .
blockSeqs : . G . . . CCGTCA T A T . . . C . T A . T G . . ATACATACACAAG . . T C . A AC T .
blockSeqs : . . . . T . . . . . T A . ATATGT . . . A . A AT T .
blockSeqs : . . . . . . . A AT T .
blockSeqs : . A A C .
blockSeqs : . . . C
blockSeqs : . .
blockSeqCons : T* CG***** ** GCC** AA**** CG***
originalCons : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGTTGGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
finalCons : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-----TTGAA---C----TGT--------------------C--CGT----CC------------GAATATACA-T-ATGTACCTTGT-GGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTTCG-----ACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCTGCC--CACATTATTATTAA----GGAGTTACG---CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT
Alignments
lowQualScore : 2222222222222 222222222 1111 33333333333333333333 2222 2222222 111111 88888888888888888888888888888888888888888888888888888888 11111111 11111 222222 11111 1 22222222 333333333 2222 222
lowQualScore : 5 4 0 7777777777777 000000000 0000 66666666666666666666 1111 5 5 2 5 8888 0 1 2 4 2 3 5 5555555 1 4 0 666666 33333333333333333333333333333333333333333333333333333333 9999 66666666 88 1 55 1 22 0 2 777 1 1 44444 55 444444 88888 0 44444444 1 222222222 1 3333 000
lowQualScore : . . . ............. ......... .... .................... .... . . . . .... . . . . . . . ....... . . . ...... ........................................................ .... ........ .. . .. . .. . . ... . . ..... .. ...... ..... . ........ . ......... . .... ...
lowQualScore : 7 5 4 5555555555555 000000000 6666 11111111111111111111 2222 0 0 2 0 9999 7 7 5 4 1 1 0 6666666 4 3 2 444444 44444444444444444444444444444444444444444444444444444444 4444 11111111 99 3 00 2 77 4 5 000 0 0 88888 33 222222 66666 6 88888888 4 666666666 0 5555 000
consensus : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-------------TTG---------AAC----TGT--------------------CCGT----CCGAATATACA-TA-TGTACCTTGT-GGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
Reference ( family-446 ) : NNNCCACGGGTCGAAGACC-CGGAGGGCATATAGTGT-------------TTG---------AAC----TGT--------------------CCGT----CCGAATATACA-TA-TGTACCTTGT-GGCCTCAACTCCT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATACATCATCA-CCATCATCTGAACAAGCGCATATCGTCAG-GATTTT----C-GACAAGATTATTATTTAAGGAGTTGTGCCCCCTTTTTCT------GAC----ATA------A----------T----------A-------TAC-----A----TA----CCT--------TGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTAATCAAACTTGCTATACATCATCA--CCATCACCTGAACAAGCGCATATCGTCAG---GANTNTCT--GCCCACATTATTATT---AA-GGAGTTA--CG-CCCCTTTTTCTGACTTAAAAA------ATATTTCATATACA---TA----TGTACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTGATTCTNATCAAAGCTGCTATGCATCGTCACTGGGGGACACATTTC
gi|1 : GACT-CGAAGGACAAATAATGT-------------TTG---------AAC----TGT--------------------CCAT----CCGAATATACA-AA-TGTACCTTTTTGGCCTCAACTCCT---ACAGTTTTCATCTGATTCTAATCACACTTGCTATACATTATCA-CCATCATCGTAACAAGTGAATATCATCAA-GATTTC----C-AGCCAGATTATTA-TTAAGGAGTTGTGCTGCCTTTTTCT------GGC----ATA------A----------T----------A--------AC-----A----TA----CCT--------TGTGGCCTTAACTCTTTCTACAGTTTTGATTTCATTCAGATCAAACTTGGTATACATCATCACCCCAACATCTTAAAAAGCACATGTCATCAG---GACTTTTT-------CATCAAAATTTAAGA-GGAGTTA--TG-TCCCTTTTTCTGAC-TAACAA------TTATTTGATTTACA---GA----TGTATCTTGTGGCCTCAACTCCTCCTTCAGTGTTTATCTGATTCTTATCAAAGC----ATGTATTGTCACTGGGGGACACATTTC
gi|10 : ctaccttgagtcattCCATGGGTCAAAGATC-CGTAGGTCGTA--GTGT-------------TTG---------GACCGGCTGT--------------------CTGT----CCGAATATACT-TA-TGTAACTTGT-GGCCTAAACTTCTCTTACAGTTTTCATCCAATTTTAATAAAACTTGCTATACATCGTCA-CGATCATCAGAACAAGCACATTTCGTCAG-GATTTT----CTGACAAGATTATTAtggtttc
gi|11 : gcccATTTAAGGAGTTCTGTCCCCTTTTTCT------GAC----TTA------A----------C----------A-------TATCTCATA----TA----CCTATGTTCACTGTGGCCTCAAATCCTCCAACAGTTTTCATACAATTCTTATCAAACTTGCTATACATCATCA--CCATCACCTGAACAATCGCATGTTGT
gi|12 : AATTGTGCTCA-TTTTTCT------GAC----TTA------AAAACAGTTCAT----------A-------TAC-----A----TATAAACAT--------TGCGGCC-CAACTCTTCCTACAGTTTTCATCTGATTCTAATCAATTTTGCTATACATCACCA--CCCTCCCTTGAACAATCACATATTGTCAG---aaatgggggcaatgatgtaataattggac
gi|13 : CCACAGGTCGAAGACC-CTGAGGGCATGTAGTGTGCGTCCTGTACGTCTGTCTACATCCATC----TAT--------------------CTGT----CTGAATATACA-TT-TGCACCTTGT-AGCCTCAACTCCT---tggggccatccgtgtactaactggacacatttctt
gi|14 : ccTAAACA-TA-TGTACATTGT-GGCCTCAA-----------------------TTCTAATAAAACTTGCTATAAACCATAAACCTTCATCTGAACAAGCACATATCTTCAT-GATTTcc
gi|15 : GGCATATAATGT-------------TTG---------AAC----TAT--------------------CCGT----atcactca
gi|16 : tGTCAAAGACCTCCGAGG-CAAATAATGT-------------TTG---------AAC----TGT--------------------Cttatctgtctgtcccaccgaccgaatctacatatg
gi|19 : cccagtATCACCTGAACAAGCACATAAAGTCTG---GAATTTCT--GCCCACATTATCATT---GA-ttttggtcaattgtac
gi|2 : CCACGGGTAGAAGACC-CGGATGGCATATTGTAT-------------TTG---------AAC----TGTCCGTCTAAATATATGTCCGTCCGT----CCGAATATACA-TA-TG--CCTTA---ACTTC---TCTT---ACAGTTTTCATCCGATTCTAATCAAACTTGCTATAGATCATGA-CCATCATCTAAACAAACGTATATCATCAG-GATTTTA---C-GACAAGATTATTATTTAAGTAGGTATGCCTCCTTTTCCT------GAC----AT-------A----------T----------G-------T------------T-----CCT--------TGTGTTCTCA---CTTTCTACACTTTTCATCTGGTTCTAATCAAACTTGCTATACATCATCA--TCATCA----AGC---CGCATATTATCAG---a
gi|20 : CATCATCA-CCGTCATCAGAACAAGCGCATTTCtgggacatccgagtactaattagacacatttttgtttaaattattgttttcgaacgcgactattgttttgtccaggatagctgctataattgtgtatatatatat
gi|3 : T--------------------CCGT----CAGAATATACA-TA-TATATCTTGT-GGCCTTAACTCC-----------TCCTCCAAATCTGATCAAAATTTCTATACATTATCG----------GAACAAGCACATTTCGTCAGCAATTTC----C-AACAATATTATTATTTAAGGATTTATG-CCCCTTCTTCT------GACTTAAATATAGTTTA----------T----------A-------TAC-----AGATGTA----GNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCTTGATATCCATCATTG--CCATCGCCTTAACAACCGCATATTGTAAG---
gi|4 : caaatagtttttgaaatgtccgtctgtccgtccgtctgcccgcccaCATGGGTCGAAGACC-CAGAGGCCATATAGCAT-------------GTG---------GAC----TGT--------------------CTGTTTGTCCGAATATACA-TAATGTACATTGT-GGCCTCAACTCCT---ACATCTTTCATCTGATTCTAATCAAACTTGCTATGCATTATCA-CCATCATCTGAACAAGCGCATATCATCAG-GATTTT----CAGACAAGGTTATCATTTAAGGAGTTATGTCCCCTTTTCCT------GACTTAAAAA------A----------T----------ATTTCACGTAT-----G----TA----CCT--------TGCGGCCTTGGCTTCTCCTACAGT----------TCCTAATCAAACTTGCCATACATCATCA--CAATCACCTGGACAAGCGCATATTGTCAG---tcgggacatccgtgtaccaattggacacatttcttgttt
gi|5 : TACATCGTCA--CCATC-------------CATACTGTCAG---GATTATTC--AGTTAGATTATTATTT--AA-GGAGTTATTC--CCCCTTTTTCGGACTTAAAAAATAAAGATATTTCGTTTACA---TT----TGTACCTtggaggcatccgtgtactaa
gi|5 : TACATTTGTA--CC-TCACCTGAACAAGCGCATATTGTCAGTGGGGGCATCT--GTGCACA--A--ATT------GGA--CA--CA-TTTCTTATTTTGATTCAAAA--------TATTTCATATACAGATTACAGATGCACCTTGTGGCCTCAACTCCTCCTACAGTTTTCATCTCATTCTAATCAAAACTGCTATACATCGTCATT---GGACATATTTCcacctgaacaagcgcatattgtcagtgggggcatctgtgcacaaattggacacatttcttattttgattcaaaatatttcatatacagattacagatgcaccttgtggcctcaactcctcctacagttttcatctcattctaatcaaaactgctatacatcgtcattggacatatttcatgtt
gi|6 : tacatcgtcaccatccatactgtcaggattattcagttagattattatttaaggagttattccccctttttcggacttaaaaaataaagatatttcgttC----ATAC-----A----------T----------A-------CAC-----AAG--TA----CCT--------TGTGGCCTTAACTCCT---ACAGTTTTCATCTGATTGTAATCAAATTTGCTGTACATCATCA--CT------TGAACAAGGGCATATCATCAG---GGGTTTTTTTGTCCACATTATTATT---AAAGGAGTAA--CG-CACCCTTTTCTGACTTAAAAA------ATATTTCATATACA---GA----CATACCTTGTGGCCTCAACTCCACCTACAGTTTTCATCTGAatgtt
gi|7 : tatatggacagttgaaaaagacttaaatatacatttgttagaatgtccgtcATCA-CCATCGTCTGATCAAGCACATATCATCAG-GATTTTTTTTC-AGCCAGATTATTATTCACG-AGTTGAGCCCTTTTTTTTTTATTCAGAA----ATA------A----------TTTTCATATTCA-------TAC-----A----TA----CCT--------TGTTGCCTCAACTCC---TACAGTTTTCATCTGATTCTAATTAAACTTACTATACATCATCA--CCATCATCTGAAGAAGTGCATA
gi|8 : CCACAGGTCAAAGACC-AGCAGGGCATAAAGTGT-------------TTG---------AAC----TGT--------------------CTGTTTGTCCAAATATACAACA-TGAACTTTGT-GGCCTCAACTCCT---ACAGTTCTCATCAGATTCTAATTAAAATTTCTATA----------CATCATCTGAACAAGCACATAAAATTGG-GATTTT----T---CACCCTGATGAGTT----AGTTGTGCTCCCATTTc
gi|9 : c----TA----CTT--------TATGACCTGAACTCC---TACAGTTTACATATGATTCGAATCAAACTTTCTATACATCATCA--CCATCATCTGAACAAGTGCATATCGTCAG---GATTGTCT--GCCCACATTATTG-----AA-GGAGTTA--TGCCCCCTTTTTCTGAC-TAAAAA------ATATTTCATATACA---TC----TGTACCTTGTGGCCTCAACTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTCGAAGACCCGGACTTTCCGTCCATCCGTCCGTCCGTCCGTCTGTCCGTACGTCT
Unaligned ( gi|18 ): TTAGCAAGAACATATAGCGAGACCATCCGTGTACTATGAACACATTTCTAGTTT