lowQualScore : 6666 1 1 1 555555555555555 1 11111 77777777777777777777777777777777777777777 4444444 1 222 4444444444444444444444444444444444444444 111 111111 1 2222222222 2222222222222222222222222222222 1 1 8888888888888888888888888888888888888 1 1 1 7777777777777777777777777777777777 11111111 2222222222222222222 11 1111111111111 11111 1111111 222222222 111 11 11 11111 11111111111111111111111111111111111111111 2222222222222222
lowQualScore : 6 2222 5 0 7 666666666666666 3 3 1 55555 0 55555555555555555555555555555555555555555 4444 333 333 22 66 1 5555555 1 1 5 1 6 11 2222 333 444 11 0 4444444 2222 4 1111111111111111111111111111111111111111 333 000000 2 1 77 11 1 2222 1 222 1 3333 6666666666 2 444444 6666 1 1 2222222222222222222222222222222 333 0 22 1 44444 444444 3333 3333 1 7 1 88888 4444 4444444444444444444444444444444444444 1 333 2 1 3 9 0 4 3 3 7 2 1 22 8888888888888888888888888888888888 11111111 6666666666666666666 6666666 66 22 2 2 4444444444444 2 44444 555 2 22 6666666 6666666 77 777 111111111 2 111 333 4 55 2 22 33 2 2 55555 55 888888888888 9999999999 666666 6666 2 77777 99999999999999999999999999999999999999999 444444 33 1 66666666 7 222 0000000000000000 55 1 1 3 333 2 7 4
lowQualScore : . .... . . . ............... . . . ..... . ......................................... .... ... ... .. .. . ....... . . . . . .. .... ... ... .. . ....... .... . ........................................ ... ...... . . .. .. . .... . ... . .... .......... . ...... .... . . ............................... ... . .. . ..... ...... .... .... . . . ..... .... ..................................... . ... . . . . . . . . . . . .. .................................. ........ ................... ....... .. .. . . ............. . ..... ... . .. ....... ....... .. ... ......... . ... ... . .. . .. .. . . ..... .. ............ .......... ...... .... . ..... ......................................... ...... .. . ........ . ... ................ .. . . . ... . . .
lowQualScore : 0 0000 0 5 3 333333333333333 0 0 5 00000 8 99999999999999999999999999999999999999999 2222 333 333 66 66 2 9999999 3 3 2 4 0 99 9999 111 888 88 2 3333333 8888 4 1111111111111111111111111111111111111111 222 999999 8 4 22 77 2 6666 2 222 8 9999 9999999999 8 888888 7777 3 8 1111111111111111111111111111111 333 2 66 8 55555 666666 5555 7777 7 3 9 11111 0000 3333333333333333333333333333333333333 9 555 0 1 8 3 7 4 9 0 8 0 8 88 9999999999999999999999999999999999 44444444 7777777777777777777 8888888 22 99 1 1 1111111111111 1 33333 888 1 99 5555555 8888888 99 999 888888888 4 222 999 5 22 1 88 33 8 4 55555 22 333333333333 2222222222 444444 2222 1 11111 99999999999999999999999999999999999999999 666666 66 6 88888888 3 888 4444444444444444 00 8 9 9 999 7 6 4
consensus : NNAAATAAATAAATATTACAATATATAACTGACTATACATNGGAAAAATAT--AATNTATCATTCNCTNANCNTTAA--ATGAAATATATN-A--TA-AGA--AAA-----N-AA---T-G-----CA-TTT----A---T---AA--G--AATTACATGGTTAGTAGCTTA-GAATG--TC--A-GCTG-TATTT-TGG--C----GAGT-GTAAGA---A--AAGTAATA-------AAT----GCGAGCC---T----TTGGCG---AG-CA---TN-----TA-TT-NCTTTTCGT-CACG--N--GC-CAAA-ATA-CA--G-CT----GACATTC-TA---AGCTACTAACCATG----T----A--N--T-TTATTTAT------CA----TGAA-ACGCTAT-T--NG---TTTTCACCA-----C--TTTT---CGTTTAAA--AGGTG-----AA--A---ATAA----ATT----T-ATATTTTGT-CAT-----TG----C------------A----------C-------------A-A---AA-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA--T--------AA---TCGAACCA-A-----------TATT----ACGGCGGTTTTGA----------G------TTT-------GCTATGT--GTATT-T-AAT------G------TTTCTAAC-CT-A---A---A-T--ATAT-T-TG-T-------T--AC--CTAATCA--T---TCAAC-CAC--A---AAGTTTC-CTTGCAAAT-ACNGCA-TT----AACT-CC--------A--GATC----------TAAAAATA------GA---TGA-GGA-G-G-AAAAG-T-------------AGTTCCGG------------------CTACTAGCATAATAC------AGCTT-GG-AA----A--ATATTAT---GCTAGTA----GCA-------G-TC--A-GCTGTATTATG-TTAGT---AAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( gi|1 ) : TAAAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACATTAA--ATCAAATATATT-A--TA-AGA--AAA-----A-AA---T-G-----CA-TTT----A---T---AA--G--AATTACATGGTTAGTAGCTTA-GAAT---TCG-A-GCTG-TAATT-TAG--C----GAGT-TCAAGA---A--AAGTAATA-------AAT----GCGAGCC---T----TTGGCG---AG-GA---TA-----TA-TT-CATTTTCGT-CACA--A--GC-CAAA-ATG-CA--G-CT----GACATTC-TA---AGCTACTTACCATG----T----G--T--T-TTATTTAT------CA----TGAA-ACGTTTT-T--TG---TTTTCGTCA-----G--TTTT---CGTTTAAA--ATGTG-----AA--A---ATAA----ATT----T-ATAGTTTGT-CAT-----TG----C------------A----------T-------------A-A---AA-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA--T--------AA---T--------A-----------TATT----ACAACGGTTTTCG----------G------TTT-------GCCTTGT--GTATT-T-AAT------A------TTTCTAAC-CT-G---A---A-T--ATAT-C-TG-T-------T--AT--CTAATCC--T---CCAAC-CAA--A---AAATGCC-CTTGTCAAT-GCAGCA-TG----AACC-CT--------A--GATC----------TAAAAATA------GG---TGA-GGA-G-G-AAAAG-T-------------AATTCCTG------------------CTACTAGCATAATAC------AGCTT-GG-AA----A--ATAGTAT---GCTAGTA----ACA-------T-TC--A-GCTGTATTATG-TTAAT---AAAGTTAAAA-GTTGAATGATA-AATGTA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATATTGA
gi|4 : atggtttCATTGAAA-AATAT---ATATAT-ATTCTTTCACCTTTAA--AATAAAAAAATTGA--TA-AAACCAAA-----T-AG---T-G--------TTTCATGA---T---AA--ATAAATTACATGGTTAGTAGCTTA-GAAT---GGG-A-GCTG-TATTT-TGG--CTCATGACT---AAAA---G--AAGTAATcaaaaca
gi|25 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaAAAAATAT--AATTTATCA---ACTAAACGGTCACTATAAAAAATGT------A-AGA--AAACATTTA-AACTTT-GGTATTCA-TAC----A---T---AA--G--AATTACATGGTTAGTAGCTTA-GAATA--TCG---GCTG-T-ATT-TGT--C----GAGT-GTAAGA---A--GAGCAATA-------AGT----TCGAGCC---C----TTGGCG---AG-TA---TT-----TA-TT-TATcataaactactgcagatagcggatgagttttaagtacgacatcgcttgctggcaaataacctgcagcaaagaaatagttccataaccaaaccaaatattacagcagttttgagtttgctatgtgtatttaatgtttgtaacctgaaacatatatttttacctgatcattcagccaaaaaatgtccttacaaatacaccatttactctagatttaaaaacaggtgaatgaaaatttaaatctgactaccagaatagtacagcttggaaaagtactagttagctttattaggtcagtaaagctgcatgatatata
gi|2 : cTTAA--ATGAAAAATGGT--------GA--AAA-----CCAA---TAG-----CAATTT----AAGAT---AA--ACAAATTACACGGTTAGTAACTTACGAGTG--TC--A-GCTG-TATAT-TAG--C---------TCATGACAAA--AAGAAATA-------AAT----GCTCACCAAATG---TTCGCATTTAC-AA---TG-----TA-TT-ACTTTTC-T------------------ATA-CA--G-CT----GACATTC-TA---AGCTACTAACCATG----T----GATT--C-TTATATAca
gi|15 : TTAA--ATGAAGTGTTTA-A--TG-ATA--AAT-----G-AA---T------------T----A---C---AT--G-----TACATGGTTAGTAGCTTA-GAATG--TC--A-GCTG-TATTT-TGGCTC----GTGT-T---GA---A--AAG----A-------AAT----G---GCT------------CA---A---A---TT-----TA-TT-ACTTTTC-T-TACA--C--TCACAAAGATA-CA--G-CTATGAGACATAC-TA---AGCTACTAACCATGAAATT----G--T--T-ATATaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|12 : tAAATACATA-A--TA-AAACTAAAGGT--A-AA------------A-TAT----A---T---AA--G--CATTACATGGT----A----A-AAATA--TC--A-GCCG--AGTT-TAG--C----GAGT-GTAAGA---A--AAGTAATA-------AGT----GCACGCC---T----TTAGaaggtgaacacaaattgatattttgacattgcacttcctctttaacaaaatttggcagttagtggattaatttttagtacaacatctggtgctggcgaatcacctacaacaaagaaatagttcgctaatcaaaccaaatgttattggggattggagttaatataatgtttttgatgtaaaatgtagtttttaccttatgattcaatctcaaattttccttgcaaatactaca
gi|28 : ATATAT--A--TATAGA--AA--------------------------T----A---T---AA--G--AATATCATAGTTAGGAGCTTA-AAATG--TC--A-GCTG-TATTT-TGG--C----GAGT-GTAAGA---A--AAGTAATA-------AAT----GCGAGCC---ttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|5 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttgaaaggTATATT-A--TA-AGA--ACA-----A-AA---T-A-----CA-TTT----A---T---AA--G--AATTACATGGTTAGTAGCTGA-GAAT----------------------G--C----CAGT-GTAAGA---A--AATTAATA-------AATACATGCGAACC---T----TAGGCG---AG-CA---TA-----TA-TT-TCTTTTCGT-CACA--A--GC-TAAA-ATA-CA--G-CT----G-------TA---A-------------------------T--T-TT-TTTAT------CA----TGAA-ACATTAT-T--TG---TTTTCATCA-----G--TTTT---CGTTTAAA--ATGTG-----AA--A---ATAA----ATT----T-ATAGTTTGT-CAT-----TG----C------------A----------T-------------A-A---TA-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA--T--------AA---T--------A-----------TATT----ACAACGGTTTTCG----------G------TTT-------GCCTTGT--GTATT-T-AAT------A------TTTCTAAC-CT-G---A---A-T--ATAT-C-TG-T-------T--AT--CTAATCC--T---CCAAC-CAA--A---AAATGCC-CTTGTCAAT-GCAGCA-TG----AACC-CT--------A--GATC----------TAAAAATA------GG---TGA-GGA-G-G-AAAAG-T-------------AGTTCCTG------------------CTACTAGCATAATAC------AGCTT-GG-AA----A--ATAGTAT---GTTAGTA----GCA-------G-TC--A-GCTGTATTATG-TTAGT---AAAGTTAAAA--TTGAATGATA-AATGT
gi|21 : TATATC-AGTTA-ATA--AAA-----T-AA---------------------A---T---AA--G--AATTACATGGCTAGTAGCTTG-GTATG--TC--A-GCTG-TATTT-TGG--C----GAGT-GTAAGA---A--AAGTAATA-------AAT----GCAAGCC---T----TTGGTG---AG-CA---TT-----TA-TT-TCTTATTGT-TACA--A--GC-
gi|17 : tataaaagtatgacttttgattcattgagcagctctattttatgtgGA--AAA-----T-GA---TAG-----TG-TTT--------T---AATTA--AATTACGTGGTTAGTATCTTA-GCATG--TC--A-GCTA-TATTT-TGG--C----GAGT-GTAAGA---A--AAGTAATA-------AAT----GCGAGCT---T----TTGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|23 : tttaaatcgatggggtaaatacggtatttgcaaaaaagctttatggttgagtcattacgtaaacacctatattttaggtaaaaaaaagcaacattagatacccatagcacaaagacatagtattatcaaactatttatttgttatagatgattcgccagcacgctatgacgtacttaaagtgcatccgctaactgccgtattttgttaaaggggaagtacaatgctaaaatatatttatgttcgcctttaaaacaaaaagtagcA-TAT----A---T---AA--G--AATAACGTGGTTAGTAA--TA-G-AT---GCA-A-GT-----ATT-TGG--C----GAGttcaaaatacatgtagcaaactta
gi|34 : ataaA-TTT----A---TGATAA--ATCAATTACATGATTAGTAGCTTA-GAAT---catttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|3 : gagT----A---T---AA--G--AAATACATAGTTAGTAGCTAA-GAACG--TCA-ACGTTT-TTTTT-TGG--C----AAGT-GTAAGA---A--AAGTACTA-------A----------------------TGGTG---AG-CA---TT-----TA-TT-TCTTTTCAT-AATG--A--GC-AAAA-ATA-CA--G-CT----ACCATTC-TA---AGCTACCGACCAAA----C----A--A--T-TTATTTGT------CA----TGAA-ACACTAT-T--AG---TTTTCGTTT-----C--TTTT---TGTTCTTA--AGGTG-----AA--A---ATAA----ATT----T-ATATTTTAT-CAT-----TG----TACTTCCCCTTTAA----------C-------------A-A---AA-CACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG---T--------AA---T--------G------------GTT----ACTGTGGTTTTGA----------G------TTT-------GCTATGT--GTAAT-T-AAT------C------TTCCTAAC-TTAA---A---A-T--ATATAT-TC-T-------T--AC--CTAATGG--T---TCATT-CAC--A---ATGTTTC-CTTGCAAGT-ACAGCA-TT----AATC-CC--------A--AATC----------TAAATACA------GA---TAAGGGG-G-G-AAAAG-A-------------AGTTCCAG------------------CTGCTAGAAAAATAC------AACTT-GG-AA----A--ATATTAT---GCTTATA----GCA-------G-TC--A-GCTGTTTTATG-CTGGT---TAAGTTAAAA-GTTGCATGATA-tgatattggtgtcttccacatttttaaagtgacaatttatac
gi|2 : aT----A---T---AA--G--AATCACATGGTTAGTAGCTTA-GAATG--TC--A-GCTG-TA-------------------T--AGA---A--AAGTAATACATTGTAAAT----GCGAACA---T----TTGGTG---AG-CA---TT-----TA-TT-TCTTTTTGT-CATG--A--GC-TAAT-ATA-CA--G-CT----GACACTCGTA---AGTTACTAACCGTG----T----A--A--T-TTGTTTAT------CT----TAAA-TTGCTAT-T--GG---TTTTCACCA-----T--TTTT---CATTTAAA--AGGTGAAAATAA--ATTTATAT----ATTGTCAT-CTCGCTTCC-CCT-----TT----C------------A----------C-------------A-A---AA-TA-------AAG---------------GT-----GTCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA--T--------AA---TCAAACCAAA-----------TATT----ACGGCGGTTTAGA----------G------TTT-------GT-TTGT--TTATT-T-AAT------G------TTTCTAAC-CA-A---A---ACT--ATAT-T-TT-T-------T--AC--CTAAT----TGAATCAAT-CAC--A---AACTTTC-CTT-TCAATTACTGCA-TT----AACT-CC--------A--AATC----------TTAAAATA------GA---TCA-GGA-G-A-AAAAGGT-------------AGTTCTGG------------------CTACTAGCATAATAC------AGCTT-CA-AA----A--ATATTAT---GCTATTA----GCA-------G-TC--G-GGTGTATTAAG-TCAGT---AAAGTTAAAATGTTGCATGATA-AA
gi|15 : taT----A---T---AA--C--AATTTCATGGTTAGTAGCTTA-GTATGTCTCATA-GCTG-TATCT-TTG--T----GAGT-GTAAGA---A--AAGTAATA-------AAT----TTGAGCC---------------------------------A-TT-TCTTTTCAA-CACG--A--GC-CAAA-ATA-CA--G-CT----GACATTC-TA---AGCTACTAACCATG----TACATG--TAAT-TCATTTAT------CA----TTAA-ACACTT----------------------------------CATTTAAA--AGGTG-----AA--C---ACAA----ATT----G-ATATTTTGA-CAT-----TG----CACTTCCTCTTTAA----------C-------------A-A---AA-TTTGGCAGTTAGTGGATTAATTTTT-AGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC--T--------AA---TC-------A-----------AACC----A-AATGTTATTGG----------GGA----TTG-------GAGTTA-----ATA-T-AAT------G------TTTTTGAT-GTAA---A---A-T--GTAG-T-TT-T-------T--AC--CTTATGA--T---TCAAT-CTC--A---AATTTTC-CTTGCAAAT-ACactaattaatgtaattat
gi|10 : taT----G---T---AA--G--AATAATATGGTTTGTAGGTTA-GCGTG--TCT---GCTG-TC-TT-TGA--C----GAGT-GTAAGA---A--AAGTAATT-------AAT----GCAAGCC---T----TTA-------------------------------TTCGT-CGCA--A--GC-C----AT----------------------------GTTACTT---ATG----------------------TAT------CA----TGAA-ACAATCT-T--AT---TTTTCAACA-----C--TTTT---TG-TTAAA--AGGTG-----AA--C---ATAA----ATT----C-ATATTTTGT-CAA-----CG----C------------ACTTCACTTTTT-------------ACA---AATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA--T--------TA---TCGAACCAAA-----------TATT----ACATCAA-----A----------G------TTT--------CCTTGTAAATACTGT-AATGCAATAA------CTCCAAAC-CT-A---A---A-A--ATAtaca
gi|31 : T----A---T---AA--G--AATAAGATGGTGTGTGGTTTA-AAATG--TC--A-TCGG-TA-TT-TAG--C----GAGT-GTAAGA---A--AAGTTATA-------TAT----GCCAGCC---A----TTgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|40 : taT----A---T---AA--G--AATTACATGCTTAGTAACTTA-GAAT---TTC-A-GCTattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|6 : gcaa----A---T---AA--G--AATTACACGGTTAGTAGCTTA-GAATA--TC--A-GCTG-TATTT-TGG--C----GAAT-GTAAGA---A--AAGTAATA-------GAT----ACAAGCC---ta
gi|9 : c----A---T---AA--G--AATTACATGGTTAGTAGCTTA-GAATG--TC--A-GCTA-TA-TT-CGG--A----GAGT-GTA-TA---A--AAGTAATA-------AAT----ACAAGCC---T----TT---------------------------------TCAT-CGCA--A--GT-CAAA-A-A-CA--G-CC----AACACTC-GC---AGCTTCTAACCATG----T----A--A--T-TTATTTAT------CA----TTAA-ACACCAT-T--AG---ATTTCACCA-----T--TTTT---CCTTTAAA--AGGTG-----GT--A---ATAT----ATT----C-ATATTTTGT-CATCCACCTT----CCCCTTTA-----A----------C-------------A-A---AA-TACAGC------TGGACAAA---------------TCACCTGCA-GCAAAGTA---ATAGTACA-AAAA----TCAAACC--------AA------------A-----------TTTT----ACGGCGGTTTTGA----------G------TTT-------GCTTTGT--GTATT-----T------C------TTTCTAAT-CTAA---A---A-T--GTAT-T-TT-T-------T--AC--CTAATGA--T---TCAAT-CAC--A---GA----T-CTTG--AA-------A-TA----GACC-----------------------------------A------GG-------GGA-----AAAAG-T-------------AATT------------------------------ATAA-----------CTTGGG-AA----A--ATATCAT---GCTAGTA----ACA-------G-GC--A-GCAGTATTATG-TTATT---GAAATCAAAA-GTTGCATAATA-agcaggctttctaagctattagccatgtaatctatttatcacgaaacattatttgttttcaccatttgtcgtttaaaaagtgaaactaatttatattttgtcattgtataaaatacgcagttagcggataaatcttatgtacgacgtcgcgttccggcgaatcacctacagtaaagaaatagttcgataatcgaaccaactattacagcggttttgagtttgccatgtgtatttaatatttcgtacccgaaaatatgtgttacctaatcatccaaccacaaatttttgcttgccaatgcagcataaatctagatttaaaaatagatgagaaggaaaaagtagtgatggctactagcataataaagcttggaaaatattatgctagtagcagtcagctgtattgtgtcagtaaagttaaaaattgcatggtaaatatt
gi|22 : tcagtttgtttcattaacaaggaataatga----A---T---AA--T--AATTATATTATTAGTAGCTTA-GAAT---GAC-A-GCTG-TATTT-TAG--C----GAGT-GTAAGA---A--AATTATTA-------GCT----GCTGTCT---T----TTGGCA---AG-CA---TG-----TA-TT-TCTTTTTGT-CCCG--A--GC-CAAA-ATA-CA--G-CT----GACATTC-T
gi|39 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttataa---T---AA--G--AATCATATGGTAAGTAACTTT-GAAT---AGC-A-GTTG-TATTT-TGG--C----Ggtcgttaaacaagttgttac
gi|3 : att--AATTGTTTGGTCGGTAGCTTA-GAAT---GGT-A-GCTG-TATTT-TTG--C----TCAT-T-ATGA---A--AAGAAATA-------AAT----GCTCACC---A----TTAG-------------TA-----C-------TTTTCTTACACT--T--GC-CAAA-AAA-AAACG-TT----GACGTTC-TT---AGCTACTAACTATG----T----A--T--T-Tgat
gi|18 : atataag--AATTACATGGTAAGTGGCTTA-AAATG--TC--A-GCTG-TATTT-TGG--T----GAGT-GTAAGA---A--AAGTAATA-------AAT----GCAAGCC---T----TTGGTG---AG-CA---TG-----TATTT-CA-TTTCGT-CACG--A--GC-CAAC-ATG-TA---------------------------ATTTA-------------------------TTTAT------CA----TGAA-ACACATT-T--TG---TTTT--TCATTCTTT--TTTT---CGTTTAAA--CGGTG-----AA--A---ATAA----ACT----T-ATA-TTTAC-TAT-----TG----C------------A----------T-------------A-A---AA-TACGACAGTTAGCGGATGAATC-TTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA--T--------AA---TCAAACCAAA-----------TATT----ACTGTAGATTTAG----------G------TTT-------GCCATGT--GTATT-T-AAT------A------TTTCTAAC-AT-G---A---A-A--CTAT-T-TGTT-------T--AC--GTAATCtatttgtcatgaaacactattagttttcgtttctttttgttcttaaggtgaaaataaatttatattttatcattgtacttcccctttaacaaaacacggcaatcagcgaatgaattttaagtacaactttgcatgctgaggaatcacctatgtaaatgaaatagtttgtaatggttactgtggttttgagtttgctatgtgtaattaatcttcctaacttaaaatatatattcttacctaatggttcattcacaatgtttccttgcaagtacagcattaatcccaaatctaaatacagataaggggggaaaagaagttccagctgctagaaaaatacaacttggaaaatattatgcttatagcagtcagctgttttatgctggttaagttaaaagttgcatgata
gi|9 : t--AATTACATGGTTAGAAGCTGC-GAGTG--TTG---GCTG-T--TT-T----T----GACT-T-------------GCGATG-------AA-------AAGGC---T----T---------G-TA---TT-----TA-TT--ACTTTTAT--ACA--C--TCTCCGA-ATA-TA--G-CT----GACATTC-TA---AGCTACTAACCATG----T----AATT--C-TTATTCAT------TA----Tat
gi|23 : tcagtttgtttcattaacaagga--AATTATATGGTTAG-AGCTTA-AAATG--TC--A-GCTG-TCATT-TGG--C----TTGT-G-ACGA---A--AAGAAATA-------AAT----GCtatttatcattaaacaccattagatttcaccatttttcctttaaaaggtggtaatatattcatattttgtcatccaccttcccctttaacaaaatacagctggacaaatcacctgcagcaaagtaatagtacaaaaatcaaaccaaattttacggcggttttgagtttgctttgtgtatttctttctaatctaaaatgtattttttacctaatgattcaatcacagatcttgaaatagaccaggggaaaaagtaattataacttgggaaaatatcatgctagtaacaggcagcagtattatgttattgaaatcaaaagttgcataata
gi|6 : ataaatatataagaataacgtggttagtaatagatgcaagtatttggcgaATTACATGGCTAATAGCTTA-GAAtattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|41 : cataagaattacacggttagtagcttagaatatcagctgtattttggcgaatgtaagaaaagtaatagatacaagccagcaggctATTACATGGTTAGTAGCTTA-GAATG--TC--A-GGTG-Tctatttatcacgaaacattatttgttttcaccatttgtcgtttaaaaagtgaaactaatttatattttgtcattgtataaaatacgcagttagcggataaatcttatgtacgacgtcgcgttccggcgaatcacctacagtaaagaaatagttcgataatcgaaccaactattacagcggttttgagtttgccatgtgtatttaatatttcgtacccgaaaatatgtgttacctaatcatccaaccacaaatttttgcttgccaatgcagcataaatctagatttaaaaatagatgagaaggaaaaagtagtgatggctactagcataataaagcttggaaaatattatgctagtagcagtcagctgtattgtgtcagtaaagttaaaaattgcatggtaaatatt
gi|38 : ATATGGTTAGTAGCTTA-GAATG--TC--A-GCTG-TAATT-TGG--C----GAGT-GTGAGA---G--AATTAATA-------AAT----tta
gi|8 : GGCTAGTAGCTTG-GAGCG--TCT---GCTG-TATTT-TGA--C----GAGTGTTAA-A---A--AAGTAATA-------AAT----GGGAGCC---T----TCATC----AT-GA---AACAC--TA-TT-TATTATCAC-CAC
gi|5 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggA-AAAT---TAC-A-GCTG-TATTT-TAG--C----TTGT-G-ACGA---A--AAGAAATA-------TAT----GCTCGCC---TAAGGTTCGCA---TG-TA---TT-----TA-TT-AATTTTC-T-TACA-----------------------CT----GGCATTC-TC---AGCTACTAACCATG----T----A--A--T-T--CTTAT--------------AA-ATGTATT-T--TG---TTCTtttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|22 : tatattataA-GAATG--TC--A-GCTG-TATTT-TGG--C---------TCGGGACAAA--AAGAAATA-------CAT----GC-------------TTGCCA---AAAGA---CAGCAGCTA-AT-AATTTTCTTACACT--C--GC-TAAA-ATA-CA--G-CT----GTCATTC-TA---AGCTACTAATAATA----TA---A--T--TATTATTTAT------AAACT-TGAA-Atttatcatgaaacattatttgttttcatcagttttcgtttaaaatgtgaaaataaatttatagtttgtcattgcataatatacggcagtaagcggatgaatctttaagtacgacgtcatatgctggcgaatcacctacagcagagaaatagttcgataatatattacaacggttttcggtttgccttgtgtatttaatatttctaacctgaatatatctgttatctaatcctccaaccaaaaaatgcccttgtcaatgcagcatgaaccctagatctaaaaataggtgaggaggaaaagtagttcctgctactagcataatacagcttggaaaatagtatgttagtagcagtcagctgtattatgttagtaaagttaaaattgaatgataaatgt
gi|16 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcagga-GAAT---TCA-G-GCGGGTAATTATGA--C----GAGG-GTAAGA---A--AAGTTATA-------TAT----ACGAGCC---T----TT----------------------------CATT-------ACG--A--GC-CAAA-ACA-CA--G-GT----GACATTC-TT---AGTTACAAACCGTG----T----A--A--T-TAATGTAT------CA----TGCA-ACACTAG-T--AG---CTTTCATCA-----C--TTTT---CGTTTAAA--AAGTG-----AA--A---A-AACATCATT----TCATC-TTTG--CAC-----TA----CCTCTTTA-----A----------C-------------A-A---AA-TACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAG-----------------------------------------------------------TTCG------------------TT-------GA---GT--TTATT-T-GAT------G------TTTCTAAT-CT-G------------ATAT-CATA-T-------T--Agtcgttaaacaagttgttac
gi|14 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgt-A-GCTG-TATTT-TGC--C----GATT-GTAAGA---A--AAGTAAC--------AAT----GTGAGAA---T----TTGGCG---AA-AA---CAG----TA-TC-AATACTCAT-CACaatacatttatacctgaacatt
gi|31 : tcCAAGA---AGTAAG-AATA-------A-T----G---GC----------TGGC--------A---TA-----TA-TA-ACTTTTCTTACACT--C--GC-TAAA--TA-CC--G-AT----GACATTT-TA---AACCACACACCATtttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|13 : tatataagaataagAAGA---A--AAGTAATA-------AAT----GCGAGCC---T----TTATCG---TG-TAATTTA-----TATTT-CATTctatgtacattggtggctcaaagagttgatttgaaaat
gi|21 : gagcat--AAGAAATA-------AAT----GCTCACC---A----AAGGCT---TG-CA---TT-----TA-TT-ACTTTTCTTACACT--C--GC-CAAA-ATA-CA--G-CT----GACATAC-CA---AGCTACTAGCCATG----T----AATT--C-TTATTTAT------aaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|23 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaAGTAATA-------GAT----GCAAGTA---T----TTGGCG---AG-CA---TT-----TA-TT-TCTTTTCGT-CACA--A--GC-C-AA-ATGACA--G-CT----GACATTT-TA---AGCT-CTAACCATA----T----A--A--T-TTATTCAT------CA----TAAA-ACACCAT-T------------ATCA-----T--TTTT---GGTTTAAA--AGGTG-----AA--A---ACAT----GTT----------TTTGT-CAT-----CG----C------------A----------C-------------A-attgttacaagctgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|6 : ataaatatataagaataacgtggttAGCC---TG---CTGGCT---TG-TA---TC-----TA-TT-ACTTTTC-T-TACATTC--GC-CAAA-ATA-CA--G-CT----GATATTC-TA---AGCTACTAACCGTG----T----AATT--C-TTATtcccctttaataaa
gi|18 : cA---TT-----TA-TT-ACTTTTCTTACACT--C--AC-CAAA-ATA-CA--G-CT----GACATTT-TA---AGCCACTTACCATG----T----ttctaagctattagccatgtaatctatttatcacgaaacattatttgttttcaccatttgtcgtttaaaaagtgaaactaatttatattttgtcattgtataaaatacgcagttagcggataaatcttatgtacgacgtcgcgttccggcgaatcacctacagtaaagaaatagttcgataatcgaaccaactattacagcggttttgagtttgccatgtgtatttaatatttcgtacccgaaaatatgtgttacctaatcatccaaccacaaatttttgcttgccaatgcagcataaatctagatttaaaaatagatgagaaggaaaaagtagtgatggctactagcataataaagcttggaaaatattatgctagtagcagtcagctgtattgtgtcagtaaagttaaaaattgcatggtaaatatt
gi|8 : taattA---TT-----TA-TTACTTTTTTAA-CACT--C--GT-CAAA-ATA-CA--G-CA----GACGCTC-CA---AGCTACTgcaagcctttggtgagcatgtatttcatttcgtcacgagccaacatgtaatttatttatcatgaaacacattttgtttttcattctttttttcgtttaaacggtgaaaataaacttatatttactattgcataaaatacgacagttagcggatgaatcttaagcacgacatcgcgtgctggcgaatcacctacagcaaagaaaaagtatgataatcaaaccaaatattactgtagatttaggtttgccatgtgtatttaatatttctaacatgaaactatttgtttacgtaatcat
gi|17 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctA---TT-----TA-TT-ACTTTTCTTACACT--C--GC-CAAA-ATA-TA--G-CT----GACATGC-TA---AGATACTAACCACG----T----A--A--T-TTAATTA---------------AA-ACACTAT-C---A---TTTTCGCTA-----C--TTTT---TGTTTTAA--AGGCG-----AA--C---ATAA----AT-------ATATTTTAG-CAT-----TG----T------------A----------CTTCCCCTTTAAC-A-A---AA-TACGGCAGTTAGCGGATGCA-CTTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA--T--------AA---T--------AC----------TAT-----------GTCTTTG-------------------T-------GCTATGG--GTATC-T-AAT------GTTGCTTTTTTTTAC-CTAA---A---A-T--ATAG-G-TGTT-------T--AC--GTAATGA--C---TCAAC-CAT--A---AAGCTTT-TTTGCAAAT-ACCGTA-TT----TACC-CC--------ATCGATT----------TAAAgggagccttcatcatgaaacactatttattatcaccactttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|28 : A---TT-----TA-TT-ACTTTTCTTACACT--C--GC-CAAA-ATA-CA--G-CT----GACATTT-TA---AGCTCCTAACTATGA---T----A--T--TCTTATgcgagcttttgttcaaaatacatgtagcaaactta
gi|38 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttgaaaggatatatatatagaaatA---TT-----TA-TT-AATTCTC-T-CACA--CTCGC-CAAA-TTA-CA--G-CT----GACATTC-TA---AGCTACTAACCATA----T----gcgagcc
gi|7 : A-----CA-TG-CATTTT-GT-GGGA--A--GC-CAAG--TA-CA--A-C-------CATCC-TATTCAAATTCTT--CTTA----T----G--T--T-ATATATAT-------A----T----ACGATTT-----G---TATTCAACA-----C--TTTT---CGTTTGAA--AGGTG-----AA--G---ATAA----ATT----T-TTA-TTTGTTCAA-----TG----C------------A----------CTTCCTCTCAC---A-A---TA-TACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA--TAGGAAC--AA---A--------A-----------TAGT----ACGGCGGTTTTAA----------GTTATACTTT-------GCTGTGT--GAATT-T-AAT------G------TATCTAAC-CT-A---A----------------G-T-------T--AT--ATAATTT--A---CGGAA-TAATTC---AAGTTTC-CTTGCAAAT-ACTGCA-TA----AACT-CC--------A--AATCTAAACGTAATTAAAAATA-----------TGA-GGA-G-A-AAAAG---------------AAGTCCCGT-----------------TTACAAGAATAATAC------AGCTT-GG-AA----A--ATATTAT---GCTGGTAG---ACG---------TC--A-GATGTATATTG-TTAGT---GAAGTTAAAA-GTTACATAATACAATG
gi|4 : agttttagaacattttaataacatgcccattagatcaa-TT-C-TTTTAGT-CATG--A--GC-CAAA-ATA-CA--G-CT----CCCATTC-TA---AGCTACTAACCATG----T----A--A--T-TTATTTAT------CA----TGAA-ACACTAT-T--TG---GTTTTATCA-----ATTTTTT---TATTTTAA--AGGTG-----AAAGA---ATAT----ATA----T-ATA-TTTTT-CAA-----TG----C------------A----------T-------------A-A---AC-TACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA--T--------AA---CCAAACCAAA-----------TATT----ACAGCAGTTTTGA----------G------TTT-------GCTATGT--GTATT-T-AAT------G------TTTGTAAC-CT-G---AAACA-T--ATAT-T-T--T-------T--AC--CTGATCA--T---TCAGC-CAA--A---AAATGTC-CTTACAAAT-ACACCA-TT----TACT-CT--------A--GATT----------TAAAAACA------GG---TGA---A-T-G-AAAAT-TTA-----------AAT--CTGA-----------------CTACCAGAATAGTAC------AGCTT-GG-AA----A----AGTA-----CTAG------------------TT--A-GCTTTATTAGG-TCAGT---AAAGCTaaga
gi|6 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaattacACA--A--GC-CA-----G-CA--GGCT--------TTC-TA---AGCTATTAGCCATG----T----A--A--T-CTATTTAT------CA----CGAA-ACATTAT-T--TG---TTTTCACCA-----T--TTGT---CGTTTAAA--AAGTG-----AA--A---CTAA-----TT----T-ATATTTTGT-CAT-----TG----T------------A----------T-------------A-A---AA-TACG-CAGTTAGCGGATAAATCTT-ATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA--T--------AA---TCGAACCA-AC----------TATT----ACAGCGGTTTTGA----------G------TTT-------GCCATGT--GTATT-T-AAT------A------TTTCGTAC-CC-G---A---A-A--ATAT-G-TG-T-------T--AC--CTAATCA--T---CCAAC-CAC--A---AATTTTTGCTTGCCAAT-GCAGCA-TA----AA-T-CT--------A--GATT----------TAAAAATA------GA---TGA-GAA-G-GAAAAAG-T-------------AGTGATGG------------------CTACTAGCATAATAA------AGCTT-GG-AA----A--ATATTAT---GCTAGTA----GCA-------G-TC--A-GCTGTATTGTG-TCAGT---AAAGTTAAAA-ATTGCATGGTA-AATATgcatgatatata
gi|39 : cataagaattacacggttagtagcttagaatatcagctgtattttggcgaatgtaagaaaagtaatagat--GC-CAAA-ATA-CA--A-CT----GCTATTC-AA---AGTTACTTACCATA----T----G--A--T-Tt
gi|25 : atttaagAA-ATA-CA--G-CC----GATATTC-TA---AGCTACTAACCATG----T----AATT--C-TTATGTATGAATACCAAAGTTTAA-ATGTTTTCT--TACATTTTTTAT-A-----G--TGAC---CGTTT--A--GT-TG-------------ATAA----A-T----T-ATATTTTggat
gi|41 : ca-CA--C-CT----GACATTC-TA---AGCTACTAACCATG----T----gtcgagtgtaagaagagcaataagttcgagcccttggcgagtatttatttatca
gi|12 : attA--G-TT----CACACTT-TA---AAAAACTAACCATG----C----A--A--A-TTATATAG------CA----TGACTACAT-----------------ATAA-----G--TTTTGACCACTTA-------TG-----AA--A---ATAA----ATA----T-AAACTTTGT-TAT-----CG----C------------A----------TTTACCCTTTTAACA-A---AA-TACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA--T--------AA---TCAAACTAAA-----------TATT----ACAGCGGTTTTGA----------G------TTT-------GATACGC--GTATT-T-AATG-----A------TTTTTACC-CT-A---A---A-TAAATGT-C-TA-C-------TGAATGACTAAACT--C---CAAAC-CAA--A---Attta
gi|40 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttA--G-CT----GAAATTC-TA---AGTTACTAAGCATG----T----AATT--C-TTATcaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|34 : gcaat----GAGATTC-TA---AGCTACTAATCATG----T----A--A--T-TGATTTAT------CA----TAAA-TTGATAT-TGGTG---TCTTCCACA--------TT-------TTTAAA----GTG-----A---------CA----ATT----T-ATAta
gi|11 : CTACTAACCATG----T----C--A--C-TTATTTAT------CA----CGAA-ACACTAT-G--TG---TTTTCACCA-----C--TTTT---CAATGAAA--ATATG-----AA--A---ACAA----c
gi|13 : TTATCGTG----T----A--A--T-TTATATTT------CA----TTAA-ACATTAT-T--AA---GTTTCATCACC---G--TTT-----GATTAGA--AGGTG-----AA--C---ATAA----ATT----T-ATATTTTGA-CATCAA--TGTTCTC------------C----------TTTTTC--------A-A---AA-TACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA--T--------AA---TTGAACCAGA-----------TATT----ACAGCGGTTTTGA----------G------TTT-------GCTATGT--GTTTT-T-AGT------G------TTTCTAAT-C--A---A---A-T--ACA-----A-T-------T--AT--ATAGTTT--TAC-CTATCACAA--ACTTAAGTTTC-CTTGCAAAT-GCAGCA-TT----AACTACT--------A---ATC----------AACAGATA------GA---TGA-GGG-G-C-A---G-T-------------AGTTCTGG------------------TAACTAGCATAATAC------AGCTT-GG-AA----A--ATATTAT---GCTAGAG----GCA-------G-TC--A-GCTGggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|8 : gagcataagaaaagtaataaatgcgagcctTTCAT------CA----TGAA-ACACTAT-T--TA---TTATCACCA-----C--TTTC---TGTTTTAA--A---G-----AA--G---A-AA----ATT----T-ATATTATGT-CAT-----TG----C------------A----------C-------------A-A---AA-TACGGCAAT-------------TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA--T--------AA---TCGAACTAAA-----------TATTTTTGATTTTGTTTTTTGCTTTGATTTAG------TTTTGATGTTGCTATGT--GTATT-T-ACT------A------TTTGTAAC-CC-GA--A---A-T--GTAT---GG-T-------T--ATACCTAATCA--T---TCAGC-CAC--A---AAATGTC-CTTGCAAAT-AAAGC-------------------------------------------AAATT------GG---TGA-GAA-----AAAAG-T-------------AGTTCTGG------------------TTACTAGCATAATAC------AGCTT-GGAAA----A--ATAGTAT---GCTAATA----GCA-------G-TC--A-GCTGTGTTATG-TTAGT---AAAGTTTAAA-GTTGCATG
gi|33 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccT------CA----TGAA-ACACTAT-T--AG---TTTCCACCA-----C--TTTT---GGTTTTAA--AGATG-----AA--A---ATAG----ATT----T-ATATTTTAT-CGT-----CC----T------------A----------C-------------A-A---AA-TACAACGGT
gi|19 : --TTTT---TGTTTAAATGGTGT----------A---ATAA----ATT----T-GTATTTTGT-CAT-----TG----TACTTCCGCTTTAA----------C-------------A-A---AA-TACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA--TAAACAAACAA---A--------A-----------TATT----ACGGTGGTTTTGA----------G------TTT-------GCTACGT--GTGTT-T-ATT------G------TTTTTAACGTT-A---A---A-T--ATAT-T-T--T-------T--AC--CTGATCA--T---TAAAT-CAC--A---AAGTTTC-CTTGTAAAT-
gi|11 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttatttcGTG-----AA--A---ATAA----ATA----T-ATATTTTGT-CAT-----CG----C------------A----------T-------------A-A---AA-TAC-------AGCGGACGAATCTT-AAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGA--T--------AGGCCT--------AATCGAACCAACTATT----ACAGCGTTTTTGG----------G------TTT-------GCCAT-T--GTATT-T-AAT------A------TTTCTAAT-CC-GCAGA---A-T--ATAT-T-TG-T-------TT-AC--CTAATCA--T---TCAAT-CGT--A---ACATTTC-CTTGCCAAT-GCCGTA-TT----AACT-CT--------T--GATT----------TAAAAATA------GA---CGA-GGA-GTG-ACGGG-TTTTAGTTCTGATCAGTTCTGG------------------CTACTAGCATAATAA------AGCTC-TG-AA----A--ATATTAT---ACTACAA----GCA-------G-TC--A-GCGGTATTATA-TTAattatgttaatacaaatc
gi|14 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttgTAA----ATT----A-AT--TTTGC-CAT-----CG----C------------ACTTCCCTTT-T-------------A-ACAGGA-TACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCA----AAAAAGT---------------AG---T--------A-----------CATT------------------------------------------------------TATT-T-GAT------A------TTTCTAAC-TT-A---A---A-T--ATA----TA-T-------TAAAC--CTAATAA--T---TCAAT-CAC--A---AAATGAT-CTTGTGAAT-ACAGCA-TT----AATT-TC--------A--AATT----------TAGATTTA------GA----AA-GGG-G-G---ATG-T-------------AGCTCTGG------------------TTAGTAGCGTAATAC------AGCTA-GG-AA----A--ATAATATTAAGCTTATA----GCA-------G-TG--A-GCTTTATAATGCTTCAT---AA---TAAAA-Gg
gi|21 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatc----ATT----T-AT---TTCT-TAT-----TG----T-----------------------T-------------A-C---AA-----GCTGTTAGCAGATGAATTTCGAAA-ACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA--T--------AA---TTGAACCAAA-----------TATT----ATGATGGattacggtcaacttactagatgta
gi|20 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcAATCACCTACAGCAAA-GAAATAGTTCGA--T--------AA---TTGAA----A-----------CATTTAT-GCGGCCGTTTTGA----------G------TTT-------GCTATTT--GTATT-TTAAT------A------TTTCTAAT-CT-A---AT--A-T--ATAT-C-TA-TACAGTTTT--AC--CTTATGA--T---TCAAT-CAC--A---TAGTTTC-CTTGCAAAT-ACAGCA-TT----AAGT-CT--------A--AATC----------TAAAAATA------GA---TGA-AGG-GAG-AAAAG-T-------------AGTTCCTG------------------CTACTAGCAAAATGC------AGCCT-GG-GA----A--ATATTAC---GCAAACA----GTA-------G-TC--T-GCTGCATTATG-CTTGT---TATGTAAAAA-GTTG
gi|24 : a-T-------T--AC--CTAATGCGAC---TCAAT-TAC--A---AAATTTC-GTTGCAAAT-GCCGCT-TT----AACT-CTTTATAGAAA--GATA----------TATAAATATTGAAAGGAGTTGG-GGT-G-G-G---G-T-------------ATGTATTG------------------ATGCTATCTTAATAT------AGCTT-TG-GA----G--ATATTAT---ACTAGTA----GCA-------A-TC--A-GCTGAATTATG-TTca
gi|10 : --A---AAGTTTC-CTTGTAAAT-ACTGTAATGCAATAACT-CC--------A--AACC----------TAAAAATA------GA---CGA-GGA-G-C-AAAAG---------------AGTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAA------AACTT-GG-AA----A--ATAGTCC---GCTGATA----GCC-------G-TA--A-ACTGTATTA-----AAT-------TT-AAC-GTTGCATTATA-AATATcgttaatt
gi|26 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatcC-CTTGCCAAT-GCAGCA-TT----AACT-CT--------A--GATT----------TAAAAATA------GA---TGA-GGG-G-G-TAAAG-T-------------TATTCTGA------------------CTACTAGCATATTAC------AGCTT-GA-AAC---A--GTATTAT---GCTAGTA----GCA-------G-TT--A-GCTGTAATATG-CTAGT---AAAGTTCAAA-ATTGAATGATA-AATATAgc
gi|30 : ttC-CTTGAAAAT-ACTGCA-TT----AACT-CC--------A--AATT----------CACACATA------GC---CGA-G-------------T-------------AGTTCCAG------------------CTACTAGCATAACGC------AACTT-GG-AA----A--ATATTAT---ACTAGTA----GCA-------G-TC--A-GCGTTATAATA-CTATT---AAAGTTAAAA-GGTGCATGAt
gi|27 : CT-CT--------A--AATC----------TAAAAATA------GA---TTA-GAATA-A-AAAAG-T-------------A------G------------------TTACTAGCACAATA----------------GA----T--ATGCTAT---TCTAGTA----GGAG------TGTC--A---TGTATCACG-TTAGT---AAAGTTAAAA-GC---ATGGTA-AA
gi|32 : gttctacataatgattcaatttttttgcgaataatgtattgt--------A--AATC----------TAAAATTA------GA---TGA-GGA-G-A-AAAAA---------------AGTTCCGG------------------CTTCTAGCATAATAC------AGCAT-GG-AT----A---TATTAT---GCTAGTA----CCA-------G-TT--A-GCTGTATTATG-CTAAT---AAAGTTAAAA-G--GAATGA
gi|12 : c---TGA-G-A-G-G-AAAAG-T-------------AGTTCTGA------------------CAACTAGCACAAAAA------TGCTT-GG-A
gi|6 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttagttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaaCTG------------------CTACTAGCATAATATTTTCCAAGCTT--------------TATTAT---GCTAGTA----GC
gi|2 : cataagaattacacggttagtagcttagaatatcagctgtattttggcgaatgtaagaaaagtaatagatacaagccagcaggctttctaagctattagccatgtaatctatttatcacgaaacattatttgttttcaccatttgtcgtttaaaaagtgaaactaatttatattttgtcattgtataaaatacgcagttagcggataaatcttatgtacgacgtcgcgttccggcgaatcacctacagtaaagaaatagttcgataatcgaaccaactattacagcggttttgagtttgccatgtgtatttaatatttcgtacccgaaaatatgtgttacctaatcatccaaccacaaatttttgcttgccaatgcagcataaatctagatttaaaaatagatgagaaggaaaaagtagtgatgCTG------------------CTAATAGCATAATAT--------TTT-TG-AA----GCTGTATTAT---GCTAGTA----GCtcagctgtattgtgtcagtaaagttaaaaattgcatggtaaatatt
gi|26 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctgCTG------------------CTACTAGCATAATAC------TGTTT--C-AA----GCTGTAATAT---GCTAGTA----tcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|5 : ttccttgccaatgcagcattaactctagatttaaaaatagatgagggggtaaagttattctgacTACTAACATAATAC------AGCT---G-A-------------CT---GCTACTA----ACATACTATTT-TCCAA-GCTGTATTATG-CTAGT---Attagctgtaatatgctagtaaagttcaaaattgaatgataaatatat
gi|8 : tatattataagaacaaaatacatttataagaattacatggttagtagctgagaatgccagtgtaagaaaattaataaatacatgcgaaccttaggcgagcatatatttcttttcgtcacaagctaaaatacagctgtaatttttttatcatgaaacattatttgttttcatcagttttcgtttaaaatgtgaaaataaatttatagtttgtcattgcataatatacggcagtaagcggatgaatctttaagtacgacgtcatatgctggcgaatcacctacagcagagaaatagttcgataatatattacaacggttttcggtttgccttgtgtatttaatatttctaacctgaatatatctgttatctaatcctccaaccaaaaaatgcccttgtcaatgcagcatgaaccctagatctaaaaataggtgaggaggaaaagtagttcctgcTACTAACATAACAC------AGCT---G-ACTGCTA--TTAGCAT---ACTATTT--------------T-TCCAA-GCTGTATTATG-CTAGT---AAaagttaaaattgaatgataaatgt
gi|32 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccttcatcatgaaacactatttattatcaccactttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggTATTAGCATAATAC------AGCT------A----A--CTGGTA-----CTAGCATAATATA-------T-CC--ATGCTGTATTATG-CTAaagtttaaagttgcatg
gi|37 : caaatctaaaattagatgaggagaaaaaaagttccggcttcGTAT---GTTAGTA----GCA-------T-TC--A-ACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATaagttaaaaggaatga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 1 11 11 444444444 11 1111 77777777777777777777777777 999999999999999999999999999 222222222 111111111111111111111111 1111111111 111111111111111 11111111111111111
lowQualScore : 5 5 3 77 33 1 55 11 1 1 999999999 33 222 4444 77 11111111111111111111111111 5555 22 1 6666666 4444 8888888 55555 2 3 1 0 2 7777777 1 666 3 22 22 0 22 44444 6666666 222222222222222222222222222 4 1 555555 44 222222222 55555 7777777 77777777 666666 2 22 2 2 777777 555555 2 666666666666666666666666 6 666 5555555555 44 777 4 5 1 3 44444 0 66666666 222 333 5555555555 22 2 666 4 111111111111111 2 2 0 44444444444444444 2 555 2 2 22 2 333 1 2 3
lowQualScore : . . . .. .. . .. .. . . ......... .. ... .... .. .......................... .... .. . ....... .... ....... ..... . . . . . ....... . ... . .. .. . .. ..... ....... ........................... . . ...... .. ......... ..... ....... ........ ...... . .. . . ...... ...... . ........................ . ... .......... .. ... . . . . ..... . ........ ... ... .......... .. . ... . ............... . . . ................. . ... . . .. . ... . . .
lowQualScore : 5 0 0 00 88 0 00 77 0 0 333333333 88 111 4444 99 00000000000000000000000000 7777 55 1 2222222 0000 0000000 33333 9 1 0 1 7 4444444 9 222 5 66 55 4 44 55555 2222222 999999999999999999999999999 2 9 888888 22 888888888 00000 2222222 22222222 111111 3 99 0 0 888888 888888 0 888888888888888888888888 0 333 9999999999 55 222 2 6 8 4 55555 3 66666666 888 333 2222222222 88 0 222 0 555555555555555 0 0 5 00000000000000000 0 888 0 0 88 1 777 1 4 6
consensus : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA--AAAN---A-------------AT-CAT-TATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------AAT----GCGAGCCTTTG------GCGAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TAAGCTACTAACCATGTAA------TTTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAAA--ATAAATTTATATTTTGTCAT-----CGC-------A--------------CT-C---T-----AAAATACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAAC-C-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGAG--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( family-4448 ) : NNAAATAAATAAATATTACAATATATAACTGACTATACATNGGAAAAATAT--AATNTATCATTCNCTNANCN--------TTAA--ATGAAATATATNA--TAAGA--AAAN---A-------------ATGCATTTATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------AAT----GCGAGCCTTTG------GCGAGCA---TNTATTNCTTTTCGT-CACGNGCCAAAATACAGCTGACATTC-TAAGCTACTAACCATGTAN------TTTATTTATCATGAA-ACGC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAAA--ATAAATTTATATTTTGTCAT-----TGC-------A--------------C------------AAAATACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAAC-C-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGAG--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
gi|1 : AAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACA--------TTAA--ATCAAATATATTA--TAAGA--AAAA---A-------------ATGCATTTATAAGAATTACATGGTTAGTAGCTTAGAAT-TCG---AGC--TGTAATTTAGCGAGTTCAAGAAAAGTAATA-------AAT----GCGAGCCTTTG------GCGAGGA---TATATTCATTTTCGT-CACAAGCCAAAATGCAGCTGACATTC-TAAGCTACTTACCATGTGT------TTTATTTATCATGAA-ACGT-TTTTTGTTTTCG--TCA--GTTTTCGTTTAAAATGTGAAA--ATAAATTTATAGTTTGTCAT-----TGC-------A--------------T------------AAAATACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT------------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGAG--GA-G-G-AAAA-G-T-------------A-A-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGCTAGTAACA--TTCAGCTGTATTATG-TTA---ATAAAGTTAAAA-GTTGAATGATA-AATGTA
gi|10 : taTGTAAGAATAATATGGTTTGTAGGTTAGCGTGTC----TGC--TGT-CTTTGACGAGTGTAAGAAAAGTAATT-------AAT----GCAAGCCTTTATTCGTCGCAAGC----CATGTTACTT
gi|10 : AGCCATGTTA------CTTATGTATCATGAA-ACAA-TCTTATTTTTCA--ACA--CTTTTTGTT-AAAAGGTGAAC--ATAAATTCATATTTTGTCAA-----CGC-------A--------------CTTCACTTTTTACAAATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA------TTATCGAAC-CAA---A-T-----ATTACA------TC--------A-----AAGTT------TCCT-TGTAAATACTGT-AATGCAATAACT------CCAAAC-C-----------T---AA-------A-AATAatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatcaaagtttccttgtaaatactgtaatgcaataactccaaacctaaaaatagacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|10 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaCAAAGTTTC-CTTGTAAATACTGTAATGCAATAACTCC--------A--AACCTAAA---AAT-----A----GACGAG--GA-G-C-AAAA-G---------------A-GTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAAAACTT-GGAA---AA-TAG-TCCGCTGATAGCC--GTAAACTGTATT-------------AAATTTAAC-GTTGCATTATA-AATATgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|11 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatCTACTAACCATGTCA------CTTATTTATCACGAA-ACAC-TATGTGTTTTCA--CCA--CTTTTCAATGAAAATATGAAA--ACAAgc
gi|11 : GGTGAAA--ATAAATATATATTTTGTCAT-----CGC-------A--------------T------------AAAATAC-------AGCGGACGAAT-CTTAAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGATAGGCCTAATCGAAC-C-A---ACT-----ATTACA------GC--------GTTTTTGGGTT------TGCCAT-T--GTATT-T-AATA------TT------TCTAAT-C-----------CGCAGA-------A-TATAT--TTGTT-------T--ACCTAAT-C-ATTCAATCGTAACATTTC-CTTGCCAATGCCG-----TATTAACTCT--------T--GATTTAAA---AAT-----A----GACGAG--GA-GTG-ACGG-G-TTTTAGTTCTGATCA-G-TTCTGG-----------------CTACTAGCATAATAAAGCTC-TGAA---AA-TAT-TATACTACAAGCA--GTCAGCGGTATTATA-TTA---Gggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|12 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttAAATACATAA--TAAAACTAAAGGTAA-------------A---ATATATAAGCATTACATGGT----A----AAAATATC----AGC--CG-AGTTTAGCGAGTGTAAGAAAAGTAATA-------AGT----GCACGCCTTTA------G
gi|12 : AGTTCACACTT-TAAAAAACTAACCATGCAA------ATTATATAGCATGACTACA--TATAAGTTTTGA--CCA--CTT------------ATGAAA--ATAAATATAAACTTTGTTAT-----CGC-------ATTTACCCTTTTAA-C------------AAAATACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA------TAATCAAAC-TAA---A-T-----ATTACA------GC--------GGTTTTGAGTT------TGATACGC--GTATT-T-AATGA-----TT------TTTACC-C-----------T---AA-------A-TAAA----TG-TC------T--ACTGAAT-G-ACTAAACTCCAAA----C-----CAAA-AC---------------------------------AAG---AAT-------------GAG---A-G-G-AAAA-G-T-------------A-G-TTCTGA-----------------CAACTAGCACAAAAATGCTT-GGAttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|13 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttGAGCATAAGAAAAGTAATA-------AAT----GCGAGCCTTTA------TCGTGTAATTTATATTTCATT
gi|13 : ATCGTGTAA------TTTATATTTCATTAA-ACAT-TATTAAGTTTCA--TCA--CCGTTTGATTAGAAGGTGAAC--ATAAATTTATATTTTGACAT-------C-------AATGTTCTCCTTTTTC------------AAAATACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA------TAATTGAAC-C-AG--A-T-----ATTACA------GC--------GGTTTTGAGTT------TGCTATGT--GTTTT-T-AGTG------TT------TCTAAT-C-----------A---AATACAATTA-TATAG--TT--T-------T--ACCT-AT-C-A--CAAAC-TTAAGTTTC-CTTGCAAATGCAG-----CATTAACTAC--------T--AATCAACA---GAT-----A----GATGAG--GG-G-----CA-G-T-------------A-G-TTCTGG-----------------TAACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGAGGCA--GTCAGCTGaaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|14 : gagcataagaaaagtaataaatgcgagcctttTC----AGC--TGTATTTTGCCGATTGTAAGAAAAGTAAC--------AAT----GTGAGAATTTG------GCGA
gi|14 : AA-ACAG-TATCAATACTCA--TCA--CTTTTTATCTAAA----------------TTA-ATTTTGCCAT-----CGC-------A--------------CTTCCCTTTTAACAGGATACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCAAA-AAAGTAGTaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|14 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaTATT-T-GATA------TT------TCTAAC-T-----------T---AA-------A-TATA----TA-T-------TAAACCTAAT-A-ATTCAATCACAAAATGAT-CTTGTGAATACAG-----CATTAATTTC--------A--AATTTAGA---TTT-----A----GA-AAG--GG-G-G---AT-G-T-------------A-G-CTCTGG-----------------TTAGTAGCGTAATACAGCTA-GGAAAATAA-TAT-TAAGCTTATAGCA--GTGAGCTTTATAATGCTTC---ATAA---TAAAA-Gacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|15 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacattTATAACAATTTCATGGTTAGTAGCTTAGTATGTCTCATAGC--TGTATCTTTGTGAGTGTAAGAAAAGTAATA-------AAT----TTGAGCC-----------------------ATTTCTTTTCAA-CACGAGCCAAAATACAGCTGACATTC-TAAGCTACTAACCATGTACATGTAATTCATTTATCATTAA-ACAC-T----------------------TCATTTAAAAGGTGAAC--ACAAATTGATATTTTGACAT-----TGC-------A--------------CTTCCTCTTTAACAAAATTTGGCAGTTAGTGGATTAAT-TTTTAGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC------TAATCAAAC-CAA---A-T-----GTTATT------GG--------GGATTGGAGT----------TA-------ATA-T-AATG------TT------TTTGAT-G-----------TA--AA-------A-TGTAG--TTT-T-------T--ACCTTAT-G-ATTCAATCTCAAATTTTC-CTTGCAAATACTA-----CAattacggtcaacttactagatgta
gi|16 : taATTATGACGAGGGTAAGAAAAGTTATA-------TAT----ACGAGCCTTT-----------------------------CAT-TACGAGCCAAAACACAGGTGACATTC-TTAGTTACAAACCGTGTAA------TTAATGTATCATGCA-ACAC-TAGTAGCTTTCA--TCA--CTTTTCGTTTAAAAAGTGAAA--AAACATC---ATTTCATCTT-----TGC-------A--------------CTACCTCTTTAACAAAATACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAGTTCG---------------------------------------------------------TTGAGTT-----------------TATT-T-GATG------TT------TCTAAT-CTGATATCATATT---AA-------A-TACAT--TTA---------T--ACCTGAA-C-ATT
gi|17 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgtgaattcaggcgggtaGCA---TTTATTACTTTTCTTACACTCGCCAAAATATAGCTGACATGC-TAAGATACTAACCACGTAA------TTTAATTA-----AA-ACAC-TATCA-TTTTCG--CTA--CTTTTTGTTTTAAAGGCGAAC--ATAAAT--ATATTTTAGCAT-----TGT-------A--------------CTTCCCCTTTAACAAAATACGGCAGTTAGCGGATGCAC-TTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA------TAAT--------------------ACTATG------TC-----------TTTG----------TGCTATGG--GTATC-T-AATG------TTGCTTTTTTTTAC-C-----------T---AA-------AATATAG--GTG-T-------TT-ACGTAAT-G-ACTCAACCATAAAGCTTT-TTTGCAAATACCG-----TATTTACCCC--------ATCGATTTAAA---
gi|18 : AATTACATGGTAAGTGGCTTAAAATGTC----AGC--TGTATTTTGGTGAGTGTAAGAAAAGTAATA-------AAT----GCAAGCCTTTG------GTGAGCA---TGTATTTCATTTCGT-CACGAGCCAACATGTA------ATT------------------TAT------T-----TATCATGAA-ACACATTTTGTTTTTCATTCTT--TTTTTCGTTTAAACGGTGAAA--ATAAACTTATA-TTTACTAT-----TGC-------A--------------T------------AAAATACGACAGTTAGCGGATGAAT-CTTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA------TAATCAAAC-CAA---A-T-----ATTACT------GT--------AGATTTAGGTT------TGCCATGT--GTATT-T-AATA------TT------TCTAAC-A-----------T---GA-------A-ACTAT--TTGTT-------T--ACGTAAT-C-ATgagcttttgttcaaaatacatgtagcaaactta
gi|19 : t--CTTTTTGTTTAAATGGTGTAA---TAAATTTGTATTTTGTCAT-----TGT-------A--------------CTTCCGCTTTAACAAAATACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA------TAAACAAACAA-A---A-T-----ATTACG------GT--------GGTTTTGAGTT------TGCTACGT--GTGTT-T-ATTG------TT------TTTAACGT-----------T---AA-------A-TATAT--TT--T-------T--ACCTGAT-C-ATTAAATCACAAAGTTTC-CTTGTAAATATTA-----TGTTAA-TAC--------A--AATC
gi|2 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttatttTATAAGAATCACATGGTTAGTAGCTTAGAATGTC----AGC--TGTAT-------------AGAAAAGTAATACATTGTAAAT----GCGAACATTTG------GTGAGCA---TTTATTTCTTTTTGT-CATGAGCTAATATACAGCTGACACTCGTAAGTTACTAACCGTGTAA------TTTGTTTATCTTAAA-TTGC-TATTGGTTTTCA--CCA--TTTTTCATTTAAAAGGTGAAA--ATAAATTTATATATTGTCAT-----
gi|2 : taTCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA------TAATCAAAC-C-A---AAT-----ATTACG------GC--------GGTTTAGAGTT------TGTT-TGT--TTATT-T-AATG------TT------TCTAAC-C-----------A---AA-------ACTATAT--TTT-T-------T--ACCTAAT-TGAATCAATCACAAACTTTC-CTTTCAATTACTG-----CATTAACTCC--------A--AATCTTAA---AAT-----A----GATCAG--GA-G-A-AAAA-GGT-------------A-G-TTCTGG-----------------CTACTAGCATAATACAGCTT-CAAA---AA-TAT-TATGCTATTAGCA--GTCGGGTGTATTAAG-TCA---GTAAAGTTAAAATGTTGCATGATA-AActcgcttcccctttcacaaaataaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|20 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgAATCACCTACAGCAAA-GAAATAGTTCGA------TAATTGAAA-C-A---T-T-----TATGCG------GC--------CGTTTTGAGTT------TGCTATTT--GTATT-TTAATA------TT------TCTAAT-C-----------T---AAT------A-TATAT--CTA-TACAGTTTT--ACCTTAT-G-ATTCAATCACATAGTTTC-CTTGCAAATACAG-----CATTAAGTCT--------A--AATCTAAA---AAT-----A----GATGAA--GG-GAG-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCAAAATGCAGCCT-GGGA---AA-TAT-TACGCAAACAGTA--GTCTGCTGCATTATG-CTT---GTTATGTAAAAA-GTTGCAactaattaatgtaattat
gi|21 : aAAAAGTAT--GACTTTTGATTCATTGAGCAGCTCTATTTTAT--GTG---TATATCAGTTAATA--AAAT---A-------------A-------ATAAGAATTACATGGCTAGTAGCTTGGTATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------AAT----GCAAGCCTTTG------GTGAGCA---TTTATTTCTTATTGT-TACAAGC
gi|21 : tatATTTATTTCTTATTGT-----T---------A--------------C------------AA------GCTGTTAGCAGATGAAT-TTCGAAAACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA------TAATTGAAC-CAA---A-T-----ATTATG------AT--------GGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|22 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcATAATAATTATATTATTAGTAGCTTAGAATGAC----AGC--TGTATTTTAGCGAGTGTAAGAAAATTATTA-------GCT----GCTGTCTTTTG------GCAAGCA---TGTATTTCTTTTTGT-CCCGAGCCAAAATACAGCTGACATTC-T
gi|23 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttataaATATATAAGAATAACGTGGTTAGTAA--TAG-ATG-C----AA----GTA-TTTGGCGAGgtcgttaaacaagttgttac
gi|23 : ataaAGTAATA-------GAT----GCAAGTATTTG------GCGAGCA---TTTATTTCTTTTCGT-CACAAGCCAAATGACAGCTGACATTT-TAAGCT-CTAACCATATAA------TTTATTCATCATAAA-ACAC-CATT-------A--TCA--TTTTTGGTTTAAAAGGTGAAA--ACA----TGT-TTTTGTCAT-----CGC-------A--------------C------------Acatttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|24 : ataaatatataagaataacgtggtt-T-------T--ACCTAATGCGACTCAATTACAAAATTTC-GTTGCAAATGCCG-----CTTTAACTCTTTATAGAAA--GATATATA---AAT-----ATTGAAAGGAGTTGG-G-G-TGGG-G-T-------------ATG-TATTGA------------------TGCTATCTTAATATAGCTT-TGGA---GA-TAT-TATACTAGTAGCA--ATCAGCTGAATTATG-TTC---GTTAAtcccctttaataaa
gi|25 : AAAAATAT--AATTTATCA---ACTAAACG--------GTCACTATAAAAAATGT-----AAGA--AAAC---ATTTAAACTTTGGTATTCATACATAAGAATTACATGGTTAGTAGCTTAGAATATC----GGC--TGTA-TTTGTCGAGTGTAAGAAGAGCAATA-------AGT----TCGAGCCCTTG------GCGAGTA---TTTATTtt
gi|26 : cTTC-CTTGCCAATGCAG-----CATTAACTCT--------A--GATTTAAA---AAT-----A----GATGAG--GG-G-G-TAAA-G-T-------------T-A-TTCTGA-----------------CTACTAGCATATTACAGCTT-GAAAC--AG-TAT-TATGCTAGTAGCA--GTTAGCTGTAATATG-CTA---GTAAAGTTCAAA-ATTGAATGATA-AATATAtatca
gi|27 : -------T--ACATAAT-G-ATTCAA--------TTTT-TTTGCGAATAATG-----TATTGTCTCT--------A--AATCTAAA---AAT-----A----GATTAG--AATA-A-AAAA-G-T-------------A-G-T-----------------------TACTAGCACAATA---------GA---TA-TGC-TATTCTAGTAGGAGTGTCA--TGTATCACG-TTA---GTAAAGTTAAAA----GCATGGTA-AAt
gi|28 : gttcAA--AGGATATATAT-A--TA-GA--AA--------------------------TATAAGAATATCATAGTTAGGAGCTTAAAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------AAT----GCGAGCC
gi|3 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttgTATAAGAAATACATAGTTAGTAGCTAAGAACGTC----AACGTTTTTTTTTGGCAAGTGTAAGAAAAGTACTA-------A---------------TG------GTGAGCA---TTTATTTCTTTTCAT-AATGAGCAAAAATACAGCTACCATTC-TAAGCTACCGACCAAACAA------TTTATTTGTCATGAA-ACAC-TATTAGTTTTCG--TTT--CTTTTTGTTCTTAAGGTGAAA--ATAAATTTATATTTTATCAT-----TGT-------A--------------CTTCCCCTTTAACAAAACACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG-------TAATGG-------------------TTACT------GT--------GGTTTTGAGTT------TGCTATGT--GTAAT-T-AATC------TT------CCTAAC-T-----------T---AA-------AATATATA-TTC-T-------T--ACCTAAT-G-GTTCATTCACAATGTTTC-CTTGCAAGTACAG-----CATTAATCCC--------A--AATCTAAA---TAC-----A----GATAAG--GG-G-GGAAAA-G-A-------------A-G-TTCCAG-----------------CTGCTAGAAAAATACAACTT-GGAA---AA-TAT-TATGCTTATAGCA--GTCAGCTGTTTTATG-CTG---GTTAAGTTAAAA-GTTGCATGATA-
gi|30 : aC-CTTGAAAATACTG-----CATTAACTCC--------A--AATTCACA---CAT-----A----GCCG--------------A-G-T-------------A-G-TTCCAG-----------------CTACTAGCATAACGCAACTT-GGAA---AA-TAT-TATACTAGTAGCA--GTCAGCGTTATAATA-CTA---TTAAAGTTAAAA-GGTGCATGA
gi|31 : TATAAGAATAAGATGGTGTGTGGTTTAAAATGTC----ATC--GGTATTT-AGCGAGTGTAAGAAAAGTTATA-------TAT----GCCAGCCATT
gi|32 : taC--------A--AATCTAAA---ATT-----A----GATGAG--GA-G-A-AAAA-A---------------A-G-TTCCGG-----------------CTTCTAGCATAATACAGCAT-GGAT---A--TAT-TATGCTAGTACCA--GTTAGCTGTATTATG-CTA---ATAAAGTTAAAA-G--GAATGAattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|33 : TCATGAA-ACAC-TATTAGTTTCCA--CCA--CTTTTGGTTTTAAAGATGAAA--ATAGATTTATATTTTATCGT-----CCT-------A--------------C------------AAAATACAACGGT
gi|34 : GAGATTC-TAAGCTACTAATCATGTAA------TTGATTTATCATAAA-TTGA-TATTGGTGTCTT--CCA--CATT---TTTAAA--GTGA------CAATTTATA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATAT--c
gi|37 : atggttt-TATGTATGTTAGTAGCA--TTCAACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATtgacaaaaca
gi|38 : ATATGGTTAGTAGCTTAGAATGTC----AGC--TGTAATTTGGCGAGTGTGAGAGAATTAATA-------AAT----
gi|39 : TAAGAATCATATGGTAAGTAACTTTGAATAGC----AGT--TGTATTTTGGCG
gi|4 : attTACTTCTTTTAGT-CATGAGCCAAAATACAGCTCCCATTC-TAAGCTACTAACCATGTAA------TTTATTTATCATGAA-ACAC-TATTTGGTTTTA--TCAATTTTTTTATTTTAAAGGTGAAAGAATATATATATATTTT-TCAA-----TGC-------A--------------T------------AAACTACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA------TAACCAAAC-CAA---A-T-----ATTACA------GC--------AGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TGTAAC-C-----------T---GAAAC----A-TATAT--TT--T-------T--ACCTGAT-C-ATTCAGCCAAAAAATGTC-CTTACAAATACAC-----CATTTACTCT--------A--GATTTAAA---AAC-----A----GGTGA----A-T-G-AAAATT-T-------------A-A-ATCTGA-----------------CTACCAGAATAGTACAGCTT-GGAA---A------------AGTACTA--GTTAGCTTTATTAGG-TCA---GT-------AAA-GCTGCATGATA-TATAgat
gi|40 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaatTATAAGAATTACATGCTTAGTAACTTAGAATTTC----AGC--T
gi|41 : gcaaATTACATGGTTAGTAGCTTAGAATGTC----AGG--TGTta
gi|5 : TATATTA--TAAGA--ACAA---A-------------ATACATTTATAAGAATTACATGGTTAGTAGCTGAGAATGCC----AG-----------------TGTAAGAAAATTAATA-------AATACATGCGAACCTTAG------GCGAGCA---TATATTTCTTTTCGT-CACAAGCTAAAATACAGCTG-----------------------TAA------TTTTTTTATCATGAA-ACAT-TATTTGTTTTCA--TCA--GTTTTCGTTTAAAATGTGAAA--ATAAATTTATAGTTTGTCAT-----TGC-------A--------------T------------AATATACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT------------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGAG--GA-G-G-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGTTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA--TTGAATGATA-AATGTtta
gi|6 : ATAAGAATTACACGGTTAGTAGCTTAGAATATC----AGC--TGTATTTTGGCGAATGTAAGAAAAGTAATA-------GAT----ACAAGCC
gi|6 : cCAGCAGGCTTTC-TAAGCTATTAGCCATGTAA------TCTATTTATCACGAA-ACAT-TATTTGTTTTCA--CCA--TTTGTCGTTTAAAAAGTGAAA--CTAA-TTTATATTTTGTCAT-----TGT-------A--------------T------------AAAATACG-CAGTTAGCGGATAAAT-CTTATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA------TAATCGAAC-C-A---ACT-----ATTACA------GC--------GGTTTTGAGTT------TGCCATGT--GTATT-T-AATA------TT------TCGTAC-C-----------C---GA-------A-AATAT--GTG-T-------T--ACCTAAT-C-ATCCAACCACAAATTTTTGCTTGCCAATGCAG-----CAT-AAATCT--------A--GATTTAAA---AAT-----A----GATGAG--AA-G-G-AAAAAG-T-------------A-G-TGATGG-----------------CTACTAGCATAATAAAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTGTG-TCA---GTAAAGTTAAAA-ATTGCATGGTA-AATATagcaggctttctaagctattagccatgtaatctatttatcacgaaacattatttgttttcaccatttgtcgtttaaaaagtgaaactaatttatattttgtcattgtataaaatacgcagttagcggataaatcttatgtacgacgtcgcgttccggcgaatcacctacagtaaagaaatagttcgataatcgaaccaactattacagcggttttgagtttgccatgtgtatttaatatttcgtacccgaaaatatgtgttacctaatcatccaaccacaaatttttgcttgccaatgcagcataaatctagatttaaaaatagatgagaaggaaaaagtagtgatggctactagcataataaagcttggaaaatattatgctagtagcagtcagctgtattgtgtcagtaaagttaaaaattgcatggtaaatatt
gi|7 : cataagaattacacggttagtagcttagaatatcagctgtattttggcgaatgtaagaaaagtaatagatacaagcTAT------GTTATATAT-AT-AT-ACG---ATTTGTATTCA--ACA--CTTTTCGTTTGAAAGGTGAAG--ATAAATTTTTATTTGTTCAA-----TGC-------A--------------CTTCCTCTCAC--AATATACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA------TAG--GAAC-A-A---AAT-----AGTACG------GC--------GGTTTTAAGTTATACTTTGCTGTGT--GAATT-T-AATG------TA------TCTAAC-C-----------T---AAGTT----A-TATAA--TT----------T--ACGGAAT-A-ATTCAA-------GTTTC-CTTGCAAATACTG-----CATAAACTCC--------A--AATCTAAACGTAATTAAAAA----TATGAG--GA-G-A-AAAA-G-A-------------A-G-TCCCGT-----------------TTACAAGAATAATACAGCTT-GGAA---AA-TAT-TATGCTGGTAGAC--GTCAGATGTATATTG-TTA---GTGAAGTTAAAA-GTTACATAATACAATt
gi|8 : agttttagaacattttaataacatgcccattagatcaaacatgcattttgtgggaagccaagtacaaccatcctattcaaattcttctGGCTAGTAGCTTGGAGCGTC----TGC--TGTATTTTGACGAGTGTTAAAAAAGTAATA-------AAT----GGGAGCCTTgaaga
gi|8 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggTTCATCATGAA-ACAC-TATTTATTATCA--CCA--CTTTCTGTTTTAAAG---AAG--A-AAATTTATATTATGTCAT-----TGC-------A--------------C------------AAAATACGGCA------------AT-TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA------TAATCGAAC-T-AAATA-TTTTTGATTTTGTTTTTTGCTTTGATTTAGTTTTGATGT------TGCTATGT--GTATT-T-ACTA------TT------TGTAAC-C-----------CG--AA-------A-TGTATGGTTA-T----------ACCTAAT-C-ATTCAGCCACAAAATGTC-CTTGCAAATAAAG-----CA------------------------------AAT-----T----GGTGAG--AA-----AAAA-G-T-------------A-G-TTCTGG-----------------TTACTAGCATAATACAGCTT-GGAA---AAATAG-TATGCTAATAGCA--GTCAGCTGTGTTATG-TTA---GTAAAGTTTAAA-GTTGCATGcatcatgaaacactatttattatcaccactttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|9 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccTAA--CAAGG--AA-T---A-------------ATG-A---ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TATATTC-GGAGAGTGTA-TAAAAGTAATA-------AAT----ACAAGCCTTT----------------------------TCAT-CGCAAGTCAAAA-ACAGCCAACACTC-GCAGCTTCTAACCATGTAA------TTTATTTATCATTAA-ACAC-CATTAGATTTCA--CCA--TTTTTCCTTTAAAAGGTGGTA--ATATATTCATATTTTGTCATCCACCTTCCCCTTTAA--------------C------------AAAATACAGC------TGGACAAAT------------CACC---TGC-AGCAAAGTA---ATAGTACA-AAAAT-----------------CAAAC-CAA---A-T-----TTTACG------GC--------GGTTTTGAGTT------TGCTTTGT--GTATT-----TC------TT------TCTAAT-C-----------TA--AA-------A-TGTAT--TTT-T-------T--ACCTAAT-G-ATTCAATCACAGA----T-CTTG-AAAT---------------------------A--GACC------------------------AG--GG-G-A-AAAA-G-T-------------A-A-TT-----------------------------ATAA-----CTTGGGAA---AA-TAT-CATGCTAGTAACA--GGCAGCAGTATTATG-TTA---TTGAAATCAAAA-GTTGCATAATA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 1 1 11 33 444444444 11 6666666666666666666666666666 0000000000000000000000 22222222 111111111111111111111111 1111111111 111111111111111 11111111111111111
lowQualScore : 5 5 1 1 33 44 999999999 33 222 6 77 0000000000000000000000000000 5555 22 1 5555555 1 3333 1 0 66666666 99999 0 2 444 2 444 0 1 0 333 666666 4 1 1 1 4 22 22 0 22 0 333 1111111111111111111111 1 4 1 555555 44 22222222 55555 7777777 77777777 666666 2 22 2 2 777777 555555 2 888888888888888888888888 4 666 5555555555 44 777 4 5 1 3 44444 66666666 222 333 5555555555 2 22 2 666 2 111111111111111 2 2 0 44444444444444444 2 555 2 2 22 2 333 1 2 3
lowQualScore : . . . . .. .. ......... .. ... . .. ............................ .... .. . ....... . .... . . ........ ..... . . ... . ... . . . ... ...... . . . . . .. .. . .. . ... ...................... . . . ...... .. ........ ..... ....... ........ ...... . .. . . ...... ...... . ........................ . ... .......... .. ... . . . . ..... ........ ... ... .......... . .. . ... . ............... . . . ................. . ... . . .. . ... . . .
lowQualScore : 5 0 0 0 88 00 000000000 88 111 6 99 6666666666666666666666666666 7777 55 1 9999999 8 9999 3 5 77777777 22222 6 4 333 4 444 2 2 7 999 444444 4 1 9 9 2 66 55 8 44 1 333 7777777777777777777777 7 2 9 888888 22 88888888 00000 2222222 22222222 111111 3 99 0 0 888888 888888 0 888888888888888888888888 0 333 9999999999 55 222 2 6 8 4 55555 66666666 888 333 2222222222 0 88 0 222 0 555555555555555 0 0 5 00000000000000000 0 888 0 0 88 1 777 1 4 6
consensus : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT-C--CTTT--------AAAATACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( family-4448 ) : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT----CT----------AAAATACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
gi|1 : AAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACA--------TTAA--ATCAAATATATTA--TAAGA-----AA---AA------AATGCAT-TTATAAGAATTACATGGTTAGTAGCTTAGAAT-TCG---AGC--TGTAATTTAGCGAGTTCAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGGA---TATATTCATTTTCGT-CACAAGCCAAAATGCAGCTGACATTC-TA---AGCTACTTACCATG---TG------TT-TTATTTATCATGAA-ACGT-TTTTTGTTTTCG--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------T----------AAAATACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-A-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGCTAGTAACA--TTCAGCTGTATTATG-TTA---ATAAAGTTAAAA-GTTGAATGATA-AATGTA
gi|10 : ta-T-GTAAGAATAATATGGTTTGTAGGTTAGCGTGTC----TGC--TGT-CTTTGACGAGTGTAAGAAAAGTAATT-------A-AT----GCAAGCCTTTA-------------------------TTCGT-CGCAAGCCA---------TGTTACT--TA---TGT-----ATCATGAAACA------ATCTTATTTTTC----A-ACAC-TTTTTGT---------------------TAAAAGGTGAA--CATAAATTCATATTTTGTCAAC---GCA----CTTCA-CTTTTTAC----AAATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA------TTATCGAACCAA---A-T-----ATTACA------TC--------A-----AAGTT------TCCT-TGTAAATACTGT-AATGCAATAACT------CCAAAC-C-----------T---AA-------A-AATA
gi|10 : CAAAGTTTC-CTTGTAAATACTGTAATGCAATAACTCC--------A--AACCTAAA---AAT-----A----GACGA-G--GA-G-C-AAAA-G---------------A-GTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAAAACTT-GGAA---AA-TAG-TCCGCTGATAGCC--GTAAACTGTATT-------------AAATTTAAC-GTTGCATTATA-AATATgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|11 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatCTACTAACCATG---TC------AC-TTATTTATCACGAA-ACAC-TATGTGTTTTCA--CCA--CTTTTCAATGAAAATATGAA--AACAAgc
gi|11 : GGTGAA--AATAAATATATATTTTGTCATC---GCA-----------T----------AAAATAC-------AGCGGACGAAT-CTTAAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGATAGGCCTAATCGAACC-A---ACT-----ATTACA------GC--------GTTTTTGGGTT------TGCCAT-T--GTATT-T-AATA------TT------TCTAAT-C-----------CGCAGA-------A-TATAT--TTGTT-------T--ACCTAAT-C-ATTCAATCGTAACATTTC-CTTGCCAATGCCG-----TATTAACTCT--------T--GATTTAAA---AAT-----A----GACGA-G--GA-GTG-ACGG-G-TTTTAGTTCTGATCA-G-TTCTGG-----------------CTACTAGCATAATAAAGCTC-TGAA---AA-TAT-TATACTACAAGCA--GTCAGCGGTATTATA-TTA---Gggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|12 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttAAATACATAA--TAAAACTA--AAGGTAA------AAT--AT---ATAAGCATTACATGGT----A----AAAATATC----AGC--CG-AGTTTAGCGAGTGTAAGAAAAGTAATA-------A-GT----GCACGCCTTTAG--
gi|12 : AGTTCACACTT-TA---AAAAACTAACCATG---CA------AA-TTATATAGCATGACTACA--TATAAGTTTTGA--CCA--CTT------------ATGAA--AATAAATATAAACTTTGTTATC---GCATTTACC----CTTTTAAC----AAAATACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA------TAATCAAACTAA---A-T-----ATTACA------GC--------GGTTTTGAGTT------TGATACGC--GTATT-T-AATGA-----TT------TTTACC-C-----------T---AA-------A-TAAA----TG-TC------T--ACTGAAT-G-ACTAAACTCCAAA----C-----CAAA-AC---------------------------------AAG---AAT-------------GA-G---A-G-G-AAAA-G-T-------------A-G-TTCTGA-----------------CAACTAGCACAAAAATGCTT-GGAttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|13 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttGAGCATAAGAAAAGTAATA-------A-AT----GCGAGCCTTTAT--C---GTGTAATTTATATTTCATT
gi|13 : ATCGTG---TA------AT-TTATATTTCATTAA-ACAT-TATTAAGTTTCA--TCA--CCGTTTGATTAGAAGGTGAA--CATAAATTTATATTTTGACATCAATGTT----CT----CCTTTTTC----AAAATACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA------TAATTGAACC-AG--A-T-----ATTACA------GC--------GGTTTTGAGTT------TGCTATGT--GTTTT-T-AGTG------TT------TCTAAT-C-----------A---AATACAATTA-TATAG--TT--T-------T--ACCT-AT-C-A--CAAAC-TTAAGTTTC-CTTGCAAATGCAG-----CATTAACTAC--------T--AATCAACA---GAT-----A----GATGA-G--GG-G-----CA-G-T-------------A-G-TTCTGG-----------------TAACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGAGGCA--GTCAGCTGaaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|14 : gagcataagaaaagtaataaatgcgagcctttTC----AGC--TGTATTTTGCCGATTGTAAGAAAAGTAAC--------A-AT----GTGAGAATTTGG--C---GA
gi|14 : AA-ACAG-TATCAATACTCA--TCA--CTTTTTATCTAAA----------------TTA-ATTTTGCCATC---GCA----CTTCC-CTTTTAAC----AGGATACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCAAA-AAAGTAGTaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|14 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaTATT-T-GATA------TT------TCTAAC-T-----------T---AA-------A-TATA----TA-T-------TAAACCTAAT-A-ATTCAATCACAAAATGAT-CTTGTGAATACAG-----CATTAATTTC--------A--AATTTAGA---TTT-----A----GA-AA-G--GG-G-G---AT-G-T-------------A-G-CTCTGG-----------------TTAGTAGCGTAATACAGCTA-GGAAAATAA-TAT-TAAGCTTATAGCA--GTGAGCTTTATAATGCTTC---ATAA---TAAAA-Gacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|15 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatt-T-ATAACAATTTCATGGTTAGTAGCTTAGTATGTCTCATAGC--TGTATCTTTGTGAGTGTAAGAAAAGTAATA-------A-AT----TTGAGCC----------------------ATTTCTTTTCAA-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TACATGTAAT-TCATTTATCATTAA-ACAC-T----------------------TCATTTAAAAGGTGAA--CACAAATTGATATTTTGACATT---GCA----CTTCCTCTTTAAC-----AAAATTTGGCAGTTAGTGGATTAAT-TTTTAGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC------TAATCAAACCAA---A-T-----GTTATT------GG--------GGATTGGAGT----------TA-------ATA-T-AATG------TT------TTTGAT-G-----------TA--AA-------A-TGTAG--TTT-T-------T--ACCTTAT-G-ATTCAATCTCAAATTTTC-CTTGCAAATACTA-----CAattacggtcaacttactagatgta
gi|16 : taATTATGACGAGGGTAAGAAAAGTTATA-------T-AT----ACGAGCCTTT----------------------------CAT-TACGAGCCAAAACACAGGTGACATTC-TT---AGTTACAAACCGTG---TA------AT-TAATGTATCATGCA-ACAC-TAGTAGCTTTCA--TCA--CTTTTCGTTTAAAAAGTGAA--AAAACAT---CATTTCATCTTT---GCA----CTAC--CTCTTTAAC---AAAATACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAGTTCG--------------------------------------------------------TTGAGTT-----------------TATT-T-GATG------TT------TCTAAT-CTGATATCATATT---AA-------A-TACAT--TTA---------T--ACCTGAA-C-ATT
gi|17 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgtgaattcaggcgggtaGCA---TTTATTACTTTTCTTACACTCGCCAAAATATAGCTGACATGC-TA---AGATACTAACCACG---TA------AT-TTAATTA-----AA-ACAC-TATCA-TTTTCG--CTA--CTTTTTGTTTTAAAGGCGAA--CATAAAT--ATATTTTAGCATT---GTA----CTTCCCCTTTAAC-----AAAATACGGCAGTTAGCGGATGCAC-TTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA------TAAT-------------------ACTATG------TC-----------TTTG----------TGCTATGG--GTATC-T-AATG------TTGCTTTTTTTTAC-C-----------T---AA-------AATATAG--GTG-T-------TT-ACGTAAT-G-ACTCAACCATAAAGCTTT-TTTGCAAATACCG-----TATTTACCCC--------ATCGATTTAAA---
gi|18 : AATTACATGGTAAGTGGCTTAAAATGTC----AGC--TGTATTTTGGTGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TGTATTTCATTTCGT-CACGAGCCAACATGTA------ATTT-------------------------------AT-TT----ATCATGAA-ACACATTTTGTTTTTCATTCTT--TTTTTCGTTTAAACGGTGAA--AATAAACTTATA-TTTACTATT---GCA-----------T----------AAAATACGACAGTTAGCGGATGAAT-CTTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA------TAATCAAACCAA---A-T-----ATTACT------GT--------AGATTTAGGTT------TGCCATGT--GTATT-T-AATA------TT------TCTAAC-A-----------T---GA-------A-ACTAT--TTGTT-------T--ACGTAAT-C-ATgagcttttgttcaaaatacatgtagcaaactta
gi|19 : t--CTTTTTGTTTAAATGGTGTA--A-TAAATTTGTATTTTGTCATT---GTA----CTTCCGCTTTAAC-----AAAATACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA------TAAACAAACA-A---AAT-----ATTACG------GT--------GGTTTTGAGTT------TGCTACGT--GTGTT-T-ATTG------TT------TTTAACGT-----------T---AA-------A-TATAT--TT--T-------T--ACCTGAT-C-ATTAAATCACAAAGTTTC-CTTGTAAATATTA-----TGTTAA-TAC--------A--AATC
gi|2 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttattt-T-ATAAGAATCACATGGTTAGTAGCTTAGAATGTC----AGC--TGTAT-------------AGAAAAGTAATACATTGTAA-AT----GCGAACATTTGG--T---GAGCA---TTTATTTCTTTTTGT-CATGAGCTAATATACAGCTGACACTCGTA---AGTTACTAACCGTG---TA------AT-TTGTTTATCTTAAA-TTGC-TATTGGTTTTCA--CCA--TTTTTCATTTAAAAGGTGAA--AATAAATTTATATATTGTCATC---TCG----CT----
gi|2 : taTCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA------TAATCAAACC-A---AAT-----ATTACG------GC--------GGTTTAGAGTT------TGTT-TGT--TTATT-T-AATG------TT------TCTAAC-C-----------A---AA-------ACTATAT--TTT-T-------T--ACCTAAT-TGAATCAATCACAAACTTTC-CTTTCAATTACTG-----CATTAACTCC--------A--AATCTTAA---AAT-----A----GATCA-G--GA-G-A-AAAA-GGT-------------A-G-TTCTGG-----------------CTACTAGCATAATACAGCTT-CAAA---AA-TAT-TATGCTATTAGCA--GTCGGGTGTATTAAG-TCA---GTAAAGTTAAAATGTTGCATGATA-AAtcccctttcacaaaataaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|20 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgAATCACCTACAGCAAA-GAAATAGTTCGA------TAATTGAAAC-A---T-T-----TATGCG------GC--------CGTTTTGAGTT------TGCTATTT--GTATT-TTAATA------TT------TCTAAT-C-----------T---AAT------A-TATAT--CTA-TACAGTTTT--ACCTTAT-G-ATTCAATCACATAGTTTC-CTTGCAAATACAG-----CATTAAGTCT--------A--AATCTAAA---AAT-----A----GATGA-A--GG-GAG-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCAAAATGCAGCCT-GGGA---AA-TAT-TACGCAAACAGTA--GTCTGCTGCATTATG-CTT---GTTATGTAAAAA-GTTGCAactaattaatgtaattat
gi|21 : aAAAAGTAT--GACTTTTGATTCATTGAGCAGCTCTATTTTAT--GTG---TATATCAGTTAATA-----AA---AT------AA--------ATAAGAATTACATGGCTAGTAGCTTGGTATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TTTATTTCTTATTGT-TACAAGC
gi|21 : tatGCTGTTAGCAGATGAAT-TTCGAAAACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA------TAATTGAACCAA---A-T-----ATTATG------AT--------GGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|22 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcatttatttcttattgttacaa-ATAATAATTATATTATTAGTAGCTTAGAATGAC----AGC--TGTATTTTAGCGAGTGTAAGAAAATTATTA-------G-CT----GCTGTCTTTTGG--C---AAGCA---TGTATTTCTTTTTGT-CCCGAGCCAAAATACAGCTGACATTC-T
gi|23 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttataa-T-ATAAGAATAACGTGGTTAGTAA--TAG-ATG-C----AA----GTA-TTTGGCGAGgtcgttaaacaagttgttac
gi|23 : ataaataAGTAATA-------G-AT----GCAAGTATTTGG--C---GAGCA---TTTATTTCTTTTCGT-CACAAGCCAAATGACAGCTGACATTT-TA---AGCT-CTAACCATA---TA------AT-TTATTCATCATAAA-ACAC-CATT-------A--TCA--TTTTTGGTTTAAAAGGTGAA--AACA----TGT-TTTTGTCATC---GCA----Ccatttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|24 : ataaatatataagaataacgtggtt-T-------T--ACCTAATGCGACTCAATTACAAAATTTC-GTTGCAAATGCCG-----CTTTAACTCTTTATAGAAA--GATATATA---AAT-----ATTGAAAGGA-GTTGG-G-G-TGGG-G-T-------------ATG-TATTGA------------------TGCTATCTTAATATAGCTT-TGGA---GA-TAT-TATACTAGTAGCA--ATCAGCTGAATTATG-TTC---GTTAAatcccctttaataaa
gi|25 : AAAAATAT--AATTTATCA---ACTAAACG--------GTCACTATAAAAAATGTAA--GAAAACATTTAA---ACTTTGGTATT-CATAC-ATAAGAATTACATGGTTAGTAGCTTAGAATATC----GGC--TGTA-TTTGTCGAGTGTAAGAAGAGCAATA-------A-GT----TCGAGCCCTTGG--C---GAGTA---TTTATTTtt
gi|26 : cTTC-CTTGCCAATGCAG-----CATTAACTCT--------A--GATTTAAA---AAT-----A----GATGA-G--GG-G-G-TAAA-G-T-------------T-A-TTCTGA-----------------CTACTAGCATATTACAGCTT-GAAAC--AG-TAT-TATGCTAGTAGCA--GTTAGCTGTAATATG-CTA---GTAAAGTTCAAA-ATTGAATGATA-AATATAatca
gi|27 : -------T--ACATAAT-G-ATTCAA--------TTTT-TTTGCGAATAATG-----TATTGTCTCT--------A--AATCTAAA---AAT-----A----GATTA-G--AATA-A-AAAA-G-T-------------A-G-T-----------------------TACTAGCACAATA---------GA---TA-TGC-TATTCTAGTAGGAGTGTCA--TGTATCACG-TTA---GTAAAGTTAAAA----GCATGGTA-AAt
gi|28 : gttcAA--AGGATATATAT-A--TA-GA-----AA-------------------T-ATAAGAATATCATAGTTAGGAGCTTAAAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCC
gi|3 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttg-T-ATAAGAAATACATAGTTAGTAGCTAAGAACGTC----AACGTTTTTTTTTGGCAAGTGTAAGAAAAGTACTA-------A----------------TGG--T---GAGCA---TTTATTTCTTTTCAT-AATGAGCAAAAATACAGCTACCATTC-TA---AGCTACCGACCAAA---CA------AT-TTATTTGTCATGAA-ACAC-TATTAGTTTTCG--TTT--CTTTTTGTTCTTAAGGTGAA--AATAAATTTATATTTTATCATT---GTA----CTTCCCCTTTAAC-----AAAACACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG-------TAATGG------------------TTACT------GT--------GGTTTTGAGTT------TGCTATGT--GTAAT-T-AATC------TT------CCTAAC-T-----------TA--AA-------A-TATATA-TTC-T-------T--ACCTAAT-G-GTTCATTCACAATGTTTC-CTTGCAAGTACAG-----CATTAATCCC--------A--AATCTAAA---TAC-----A----GATAAGG--GG-G-G-AAAA-G-A-------------A-G-TTCCAG-----------------CTGCTAGAAAAATACAACTT-GGAA---AA-TAT-TATGCTTATAGCA--GTCAGCTGTTTTATG-CTG---GTTAAGTTAAAA-GTTGCATGATA-
gi|30 : aC-CTTGAAAATACTG-----CATTAACTCC--------A--AATTCACA---CAT-----A----GCCG---------------A-G-T-------------A-G-TTCCAG-----------------CTACTAGCATAACGCAACTT-GGAA---AA-TAT-TATACTAGTAGCA--GTCAGCGTTATAATA-CTA---TTAAAGTTAAAA-GGTGCATGA
gi|31 : -T-ATAAGAATAAGATGGTGTGTGGTTTAAAATGTC----ATC--GGTATTT-AGCGAGTGTAAGAAAAGTTATA-------T-AT----GCCAGCCATT
gi|32 : taC--------A--AATCTAAA---ATT-----A----GATGA-G--GA-G-A-AAAA-A---------------A-G-TTCCGG-----------------CTTCTAGCATAATACAGCAT-GGAT---A--TAT-TATGCTAGTACCA--GTTAGCTGTATTATG-CTA---ATAAAGTTAAAA-G--GAATGAattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|33 : TCATGAA-ACAC-TATTAGTTTCCA--CCA--CTTTTGGTTTTAAAGATGAA--AATAGATTTATATTTTATCGTC----------CT----AC----------AAAATACAACGGT
gi|34 : GAGATTC-TA---AGCTACTAATCATG---TA------AT-TGATTTATCATAAA-TTGA-TATTGGTGTCTT--CCA--CATT---TTTAAA--GTGA------CAATTTATA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATAT--c
gi|37 : atggttt-TATGTATGTTAGTAGCA--TTCAACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATtgacaaaaca
gi|38 : ATATGGTTAGTAGCTTAGAATGTC----AGC--TGTAATTTGGCGAGTGTGAGAGAATTAATA-------A-AT----
gi|39 : AT-T--TAAGAATCATATGGTAAGTAACTTTGAATAGC----AGT--TGTATTTTGGCG
gi|4 : TACTTCTTTTAGT-CATGAGCCAAAATACAGCTCCCATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTTGGTTTTA--TCAATTTTTTTATTTTAAAGGTGAAAGAATATATATATATTTT-TCAAT---GCA-----------T----------AAACTACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA------TAACCAAACCAA---A-T-----ATTACA------GC--------AGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TGTAAC-C-----------T---GAAAC----A-TATAT--TT--T-------T--ACCTGAT-C-ATTCAGCCAAAAAATGTC-CTTACAAATACAC-----CATTTACTCT--------A--GATTTAAA---AAC-----A----GGTGA-----A-T-G-AAAATT-T-------------A-A-ATCTGA-----------------CTACCAGAATAGTACAGCTT-GGAA---A------------AGTACTA--GTTAGCTTTATTAGG-TCA---GT-------AAA-GCTGCATGATA-TATAgat
gi|40 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaat-CAA-T-ATAAGAATTACATGCTTAGTAACTTAGAATTTC----AGC--T
gi|41 : gATTACATGGTTAGTAGCTTAGAATGTC----AGG--TGTta
gi|5 : TATATTA--TAAGA-----AC---AA------AATACAT-TTATAAGAATTACATGGTTAGTAGCTGAGAATGCC----AG-----------------TGTAAGAAAATTAATA-------A-ATACATGCGAACCTTAGG--C---GAGCA---TATATTTCTTTTCGT-CACAAGCTAAAATACAGC--------------------------TG---TA------AT-TTTTTTATCATGAA-ACAT-TATTTGTTTTCA--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------T----------AATATACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGTTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA--TTGAATGATA-AATGTtta
gi|6 : -ATAAGAATTACACGGTTAGTAGCTTAGAATATC----AGC--TGTATTTTGGCGAATGTAAGAAAAGTAATA-------G-AT----ACAAGCC---AG--C---AGGC--------TTTCT----------AAGCT---AT-TAGC---CA-TG-TA---ATCTATTTATCACG---AA------ACATTATTTGT------------------TTT-CA--CCA--TTTGTCGTTTAAAAAGTGAA--ACT-AATTTATATTTTGTCATT---GTA-----------T----------AAAATAC-GCAGTTAGCGGATAAAT-CTTATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA------TAATCGAACC-A---ACT-----ATTACA------GC--------GGTTTTGAGTT------TGCCATGT--GTATT-T-AATA------TT------TCGTAC-C-----------C---GA-------A-AATAT--GTG-T-------T--ACCTAAT-C-ATCCAACCACAAATTTTTGCTTGCCAATGCAG-----CA-TAAATCT--------A--GATTTAAA---AAT-----A----GATGA-G--AA-G-GAAAAA-G-T-------------A-G-TGATGG-----------------CTACTAGCATAATAAAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTGTG-TCA---GTAAAGTTAAAA-ATTGCATGGTA-AATAT
gi|7 : cTAATA-------ACAT----GC---CCATTAGATC---AAACA---TGCATTTT-----GT-GGGAAGCCAAG-TACAAC---CATCC-TATTCAAATTCTTCTTATG---TT------AT-ATATATAT---------AC-GATTTGTATTCA--ACA--CTTTTCGTTTGAAAGGTGAA--GATAAATTTTTATTTGTTCAAT---GCA----CTTCCTCTCAC-------AATATACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA------TAG--GAACA-A---AAT-----AGTACG------GC--------GGTTTTAAGTTATACTTTGCTGTGT--GAATT-T-AATG------TA------TCTAAC-C-----------T---AAGTT----A-TATAA--TT----------T--ACGGAAT-A-ATTCAA-------GTTTC-CTTGCAAATACTG-----CATAAACTCC--------A--AATCTAAACGTAATTAAAAA----TATGA-G--GA-G-A-AAAA-G-A-------------A-G-TCCCGT-----------------TTACAAGAATAATACAGCTT-GGAA---AA-TAT-TATGCTGGTAGAC--GTCAGATGTATATTG-TTA---GTGAAGTTAAAA-GTTACATAATACAATt
gi|8 : agttttagaacatttGGCTAGTAGCTTGGAGCGTC----TGC--TGTATTTTGACGAGTGTTAAAAAAGTAATA-------A-AT----GGGAGCCTTCAT--CATGAAACA----CTATTTATTATCAC-CACgaaga
gi|8 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggTTCATCATGAA-ACAC-TATTTATTATCA--CCA--CTTTCTGTTTTAAAG---AA--GA-AAATTTATATTATGTCATT---GCA----C-----------------AAAATACGGCA------------AT-TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA------TAATCGAACT-AAATA-TTTTTGATTTTGTTTTTTGCTTTGATTTAGTTTTGATGT------TGCTATGT--GTATT-T-ACTA------TT------TGTAAC-C-----------CG--AA-------A-TGTATGGTTA-T----------ACCTAAT-C-ATTCAGCCACAAAATGTC-CTTGCAAATAAAG-----CA------------------------------AAT-----T----GGTGA-G--AA-----AAAA-G-T-------------A-G-TTCTGG-----------------TTACTAGCATAATACAGCTT-GGAA---AAATAG-TATGCTAATAGCA--GTCAGCTGTGTTATG-TTA---GTAAAGTTTAAA-GTTGCATGtttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|9 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccTAA--CAAGG-----AA----T------AAT-GA----ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TATATTC-GGAGAGTGTA-TAAAAGTAATA-------A-AT----ACAAGCCTTT---------------------------TCAT-CGCAAGTCAAAA-ACAGCCAACACTC-GC---AGCTTCTAACCATG---TA------AT-TTATTTATCATTAA-ACAC-CATTAGATTTCA--CCA--TTTTTCCTTTAAAAGGTGGT--AATATATTCATATTTTGTCATC----CA----CC----TTCCCCTTTAACAAAATACAGC------TGGACAAAT------------CACC---TGC-AGCAAAGTA---ATAGTACA-AAAAT-----------------CAAACCAA---A-T-----TTTACG------GC--------GGTTTTGAGTT------TGCTTTGT--GTATT-----TC------TT------TCTAAT-C-----------TA--AA-------A-TGTAT--TTT-T-------T--ACCTAAT-G-ATTCAATCACAGA----T-CTTG-AAAT---------------------------A--GACC------------------------A-G--GG-G-A-AAAA-G-T-------------A-A-TT-----------------------------ATAA-----CTTGGGAA---AA-TAT-CATGCTAGTAACA--GGCAGCAGTATTATG-TTA---TTGAAATCAAAA-GTTGCATAATA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 1 11 33 444444444 11 6666666666666666666666666666 66666666666666666666666 22222222 111111111111111111111111 1111111111 111111111111111 11111111111111111
lowQualScore : 5 5 1 1 33 44 999999999 33 222 6 77 0000000000000000000000000000 5555 22 1 5555555 1 3333 1 0 66666666 99999 0 2 444 2 444 0 1 0 333 666666 4 1 1 1 4 22 22 0 22 0 333 77777777777777777777777 1 666 4444 2 1 4 1 555555 44 22222222 55555 7777777 77777777 666666 2 22 2 2 777777 555555 2 888888888888888888888888 4 666 5555555555 44 777 4 5 1 3 44444 66666666 222 333 5555555555 2 22 2 666 2 111111111111111 2 2 0 44444444444444444 2 555 2 2 22 2 333 1 2 3
lowQualScore : . . . . .. .. ......... .. ... . .. ............................ .... .. . ....... . .... . . ........ ..... . . ... . ... . . . ... ...... . . . . . .. .. . .. . ... ....................... . ... .... . . . . ...... .. ........ ..... ....... ........ ...... . .. . . ...... ...... . ........................ . ... .......... .. ... . . . . ..... ........ ... ... .......... . .. . ... . ............... . . . ................. . ... . . .. . ... . . .
lowQualScore : 5 0 0 0 88 00 000000000 88 111 6 99 6666666666666666666666666666 7777 55 1 9999999 8 9999 3 5 77777777 22222 6 4 333 4 444 2 2 7 999 444444 4 1 9 9 2 66 55 8 44 1 333 00000000000000000000000 9 777 2222 0 7 2 9 888888 22 88888888 00000 2222222 22222222 111111 3 99 0 0 888888 888888 0 888888888888888888888888 0 333 9999999999 55 222 2 6 8 4 55555 66666666 888 333 2222222222 0 88 0 222 0 555555555555555 0 0 5 00000000000000000 0 888 0 0 88 1 777 1 4 6
consensus : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( family-4448 ) : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
gi|1 : AAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACA--------TTAA--ATCAAATATATTA--TAAGA-----AA---AA------AATGCAT-TTATAAGAATTACATGGTTAGTAGCTTAGAAT-TCG---AGC--TGTAATTTAGCGAGTTCAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGGA---TATATTCATTTTCGT-CACAAGCCAAAATGCAGCTGACATTC-TA---AGCTACTTACCATG---TG------TT-TTATTTATCATGAA-ACGT-TTTTTGTTTTCG--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---A----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-A-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGCTAGTAACA--TTCAGCTGTATTATG-TTA---ATAAAGTTAAAA-GTTGAATGATA-AATGTA
gi|10 : ta-T-GTAAGAATAATATGGTTTGTAGGTTAGCGTGTC----TGC--TGT-CTTTGACGAGTGTAAGAAAAGTAATT-------A-AT----GCAAGCCTTTA-------------------------TTCGT-CGCAAGCCA---------TGTTACT--TA---TGT-----ATCATGAAACA------ATCTTATTTTTC----A-ACAC-TTTTTGT---------------------TAAAAGGTGAA--CATAAATTCATATTTTGTCAAC---GCA----CT---TCACTTTTT-----ACA---A----ATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA------TTATCGAACCAA---A-T-----ATTACA------TC--------A-----AAGTT------TCCT-TGTAAATACTGT-AATGCAATAACT------CCAAAC-C-----------T---AA-------A-AATA
gi|10 : CAAAGTTTC-CTTGTAAATACTGTAATGCAATAACTCC--------A--AACCTAAA---AAT-----A----GACGA-G--GA-G-C-AAAA-G---------------A-GTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAAAACTT-GGAA---AA-TAG-TCCGCTGATAGCC--GTAAACTGTATT-------------AAATTTAAC-GTTGCATTATA-AATATgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|11 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatCTACTAACCATG---TC------AC-TTATTTATCACGAA-ACAC-TATGTGTTTTCA--CCA--CTTTTCAATGAAAATATGAA--AACAAgc
gi|11 : GGTGAA--AATAAATATATATTTTGTCATC---GCA-----------------T-----A-A---A----A-TAC-------AGCGGACGAAT-CTTAAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGATAGGCCTAATCGAACC-A---ACT-----ATTACA------GC--------GTTTTTGGGTT------TGCCAT-T--GTATT-T-AATA------TT------TCTAAT-C-----------CGCAGA-------A-TATAT--TTGTT-------T--ACCTAAT-C-ATTCAATCGTAACATTTC-CTTGCCAATGCCG-----TATTAACTCT--------T--GATTTAAA---AAT-----A----GACGA-G--GA-GTG-ACGG-G-TTTTAGTTCTGATCA-G-TTCTGG-----------------CTACTAGCATAATAAAGCTC-TGAA---AA-TAT-TATACTACAAGCA--GTCAGCGGTATTATA-TTA---Gggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|12 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttAAATACATAA--TAAAACTA--AAGGTAA------AAT--AT---ATAAGCATTACATGGT----A----AAAATATC----AGC--CG-AGTTTAGCGAGTGTAAGAAAAGTAATA-------A-GT----GCACGCCTTTAG--
gi|12 : AGTTCACACTT-TA---AAAAACTAACCATG---CA------AA-TTATATAGCATGACTACA--TATAAGTTTTGA--CCA--CTT------------ATGAA--AATAAATATAAACTTTGTTATC---GCA----TTTACCC----TTTTAAC-A-A---A----A-TACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA------TAATCAAACTAA---A-T-----ATTACA------GC--------GGTTTTGAGTT------TGATACGC--GTATT-T-AATGA-----TT------TTTACC-C-----------T---AA-------A-TAAA----TG-TC------T--ACTGAAT-G-ACTAAACTCCAAA----C-----CAAA-AC---------------------------------AAG---AAT-------------GA-G---A-G-G-AAAA-G-T-------------A-G-TTCTGA-----------------CAACTAGCACAAAAATGCTT-GGAttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|13 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttGAGCATAAGAAAAGTAATA-------A-AT----GCGAGCCTTTAT--C---GTGTAATTTATATTTCATT
gi|13 : ATCGTG---TA------AT-TTATATTTCATTAA-ACAT-TATTAAGTTTCA--TCA--CCGTTTGATTAGAAGGTGAA--CATAAATTTATATTTTGACATCAATGTT----CT---CC----TTTTTC--A-A---A----A-TACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA------TAATTGAACC-AG--A-T-----ATTACA------GC--------GGTTTTGAGTT------TGCTATGT--GTTTT-T-AGTG------TT------TCTAAT-C-----------A---AATACAATTA-TATAG--TT--T-------T--ACCT-AT-C-A--CAAAC-TTAAGTTTC-CTTGCAAATGCAG-----CATTAACTAC--------T--AATCAACA---GAT-----A----GATGA-G--GG-G-----CA-G-T-------------A-G-TTCTGG-----------------TAACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGAGGCA--GTCAGCTGaaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|14 : gagcataagaaaagtaataaatgcgagcctttTC----AGC--TGTATTTTGCCGATTGTAAGAAAAGTAAC--------A-AT----GTGAGAATTTGG--C---GA
gi|14 : AA-ACAG-TATCAATACTCA--TCA--CTTTTTATCTAAA----------------TTA-ATTTTGCCATC---GCA----CTTC-CC----TTT-----T-A---ACAGGA-TACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCAAA-AAAGTAGTaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|14 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaTATT-T-GATA------TT------TCTAAC-T-----------T---AA-------A-TATA----TA-T-------TAAACCTAAT-A-ATTCAATCACAAAATGAT-CTTGTGAATACAG-----CATTAATTTC--------A--AATTTAGA---TTT-----A----GA-AA-G--GG-G-G---AT-G-T-------------A-G-CTCTGG-----------------TTAGTAGCGTAATACAGCTA-GGAAAATAA-TAT-TAAGCTTATAGCA--GTGAGCTTTATAATGCTTC---ATAA---TAAAA-Gacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|15 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatt-T-ATAACAATTTCATGGTTAGTAGCTTAGTATGTCTCATAGC--TGTATCTTTGTGAGTGTAAGAAAAGTAATA-------A-AT----TTGAGCC----------------------ATTTCTTTTCAA-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TACATGTAAT-TCATTTATCATTAA-ACAC-T----------------------TCATTTAAAAGGTGAA--CACAAATTGATATTTTGACATT---GCA----CTT--CC----TCTTTAACA-A---A----A-TTTGGCAGTTAGTGGATTAAT-TTTTAGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC------TAATCAAACCAA---A-T-----GTTATT------GG--------GGATTGGAGT----------TA-------ATA-T-AATG------TT------TTTGAT-G-----------TA--AA-------A-TGTAG--TTT-T-------T--ACCTTAT-G-ATTCAATCTCAAATTTTC-CTTGCAAATACTA-----CAattacggtcaacttactagatgta
gi|16 : taATTATGACGAGGGTAAGAAAAGTTATA-------T-AT----ACGAGCCTTT----------------------------CAT-TACGAGCCAAAACACAGGTGACATTC-TT---AGTTACAAACCGTG---TA------AT-TAATGTATCATGCA-ACAC-TAGTAGCTTTCA--TCA--CTTTTCGTTTAAAAAGTGAA--AAAACAT---CATTTCATCTTT---GCA----CTA--CC----TCTTTAACA-A---A----A-TACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAGTTCG--------------------------------------------------------TTGAGTT-----------------TATT-T-GATG------TT------TCTAAT-CTGATATCATATT---AA-------A-TACAT--TTA---------T--ACCTGAA-C-ATT
gi|17 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgtgaattcaggcgggtaGCA---TTTATTACTTTTCTTACACTCGCCAAAATATAGCTGACATGC-TA---AGATACTAACCACG---TA------AT-TTAATTA-----AA-ACAC-TATCA-TTTTCG--CTA--CTTTTTGTTTTAAAGGCGAA--CATAAAT--ATATTTTAGCATT---GTA----CTTCCCC----TTT-----A-ACAAA----A-TACGGCAGTTAGCGGATGCAC-TTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA------TAAT-------------------ACTATG------TC-----------TTTG----------TGCTATGG--GTATC-T-AATG------TTGCTTTTTTTTAC-C-----------T---AA-------AATATAG--GTG-T-------TT-ACGTAAT-G-ACTCAACCATAAAGCTTT-TTTGCAAATACCG-----TATTTACCCC--------ATCGATTTAAA---
gi|18 : AATTACATGGTAAGTGGCTTAAAATGTC----AGC--TGTATTTTGGTGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TGTATTTCATTTCGT-CACGAGCCAACATGTA------ATTT-------------------------------AT-TT----ATCATGAA-ACACATTTTGTTTTTCATTCTT--TTTTTCGTTTAAACGGTGAA--AATAAACTTATA-TTTACTATT---GCA-----------------T-----A-A---A----A-TACGACAGTTAGCGGATGAAT-CTTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA------TAATCAAACCAA---A-T-----ATTACT------GT--------AGATTTAGGTT------TGCCATGT--GTATT-T-AATA------TT------TCTAAC-A-----------T---GA-------A-ACTAT--TTGTT-------T--ACGTAAT-C-ATgagcttttgttcaaaatacatgtagcaaactta
gi|19 : t--CTTTTTGTTTAAATGGTGTA--A-TAAATTTGTATTTTGTCATT---GTA----CT---TCCGC-TTT-----A-ACAAA----A-TACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA------TAAACAAACA-A---AAT-----ATTACG------GT--------GGTTTTGAGTT------TGCTACGT--GTGTT-T-ATTG------TT------TTTAACGT-----------T---AA-------A-TATAT--TT--T-------T--ACCTGAT-C-ATTAAATCACAAAGTTTC-CTTGTAAATATTA-----TGTTAA-TAC--------A--AATC
gi|2 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttattt-T-ATAAGAATCACATGGTTAGTAGCTTAGAATGTC----AGC--TGTAT-------------AGAAAAGTAATACATTGTAA-AT----GCGAACATTTGG--T---GAGCA---TTTATTTCTTTTTGT-CATGAGCTAATATACAGCTGACACTCGTA---AGTTACTAACCGTG---TA------AT-TTGTTTATCTTAAA-TTGC-TATTGGTTTTCA--CCA--TTTTTCATTTAAAAGGTGAA--AATAAATTTATATATTGTCATC---TCG----CTTCCCC----TTTCAC--A-A---A----A-TA
gi|2 : taTCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA------TAATCAAACC-A---AAT-----ATTACG------GC--------GGTTTAGAGTT------TGTT-TGT--TTATT-T-AATG------TT------TCTAAC-C-----------A---AA-------ACTATAT--TTT-T-------T--ACCTAAT-TGAATCAATCACAAACTTTC-CTTTCAATTACTG-----CATTAACTCC--------A--AATCTTAA---AAT-----A----GATCA-G--GA-G-A-AAAA-GGT-------------A-G-TTCTGG-----------------CTACTAGCATAATACAGCTT-CAAA---AA-TAT-TATGCTATTAGCA--GTCGGGTGTATTAAG-TCA---GTAAAGTTAAAATGTTGCATGATA-AAaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|20 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgAATCACCTACAGCAAA-GAAATAGTTCGA------TAATTGAAAC-A---T-T-----TATGCG------GC--------CGTTTTGAGTT------TGCTATTT--GTATT-TTAATA------TT------TCTAAT-C-----------T---AAT------A-TATAT--CTA-TACAGTTTT--ACCTTAT-G-ATTCAATCACATAGTTTC-CTTGCAAATACAG-----CATTAAGTCT--------A--AATCTAAA---AAT-----A----GATGA-A--GG-GAG-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCAAAATGCAGCCT-GGGA---AA-TAT-TACGCAAACAGTA--GTCTGCTGCATTATG-CTT---GTTATGTAAAAA-GTTGCAactaattaatgtaattat
gi|21 : aAAAAGTAT--GACTTTTGATTCATTGAGCAGCTCTATTTTAT--GTG---TATATCAGTTAATA-----AA---AT------AA--------ATAAGAATTACATGGCTAGTAGCTTGGTATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TTTATTTCTTATTGT-TACAAGC
gi|21 : tatGCTGTTAGCAGATGAAT-TTCGAAAACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA------TAATTGAACCAA---A-T-----ATTATG------AT--------GGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|22 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcatttatttcttattgttacaa-ATAATAATTATATTATTAGTAGCTTAGAATGAC----AGC--TGTATTTTAGCGAGTGTAAGAAAATTATTA-------G-CT----GCTGTCTTTTGG--C---AAGCA---TGTATTTCTTTTTGT-CCCGAGCCAAAATACAGCTGACATTC-T
gi|23 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttataa-T-ATAAGAATAACGTGGTTAGTAA--TAG-ATG-C----AA----GTA-TTTGGCGAGgtcgttaaacaagttgttac
gi|23 : ataaataAGTAATA-------G-AT----GCAAGTATTTGG--C---GAGCA---TTTATTTCTTTTCGT-CACAAGCCAAATGACAGCTGACATTT-TA---AGCT-CTAACCATA---TA------AT-TTATTCATCATAAA-ACAC-CATT-------A--TCA--TTTTTGGTTTAAAAGGTGAA--AACA----TGT-TTTTGTCATC---GCACAT-CC---CC----TTT-----A-A---catttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|24 : ataaatatataagaataacgtggtt-T-------T--ACCTAATGCGACTCAATTACAAAATTTC-GTTGCAAATGCCG-----CTTTAACTCTTTATAGAAA--GATATATA---AAT-----ATTGAAAGGA-GTTGG-G-G-TGGG-G-T-------------ATG-TATTGA------------------TGCTATCTTAATATAGCTT-TGGA---GA-TAT-TATACTAGTAGCA--ATCAGCTGAATTATG-TTC---GTTAAtaaa
gi|25 : AAAAATAT--AATTTATCA---ACTAAACG--------GTCACTATAAAAAATGTAA--GAAAACATTTAA---ACTTTGGTATT-CATAC-ATAAGAATTACATGGTTAGTAGCTTAGAATATC----GGC--TGTA-TTTGTCGAGTGTAAGAAGAGCAATA-------A-GT----TCGAGCCCTTGG--C---GAGTA---TTTATTTtt
gi|26 : cTTC-CTTGCCAATGCAG-----CATTAACTCT--------A--GATTTAAA---AAT-----A----GATGA-G--GG-G-G-TAAA-G-T-------------T-A-TTCTGA-----------------CTACTAGCATATTACAGCTT-GAAAC--AG-TAT-TATGCTAGTAGCA--GTTAGCTGTAATATG-CTA---GTAAAGTTCAAA-ATTGAATGATA-AATATAatca
gi|27 : -------T--ACATAAT-G-ATTCAA--------TTTT-TTTGCGAATAATG-----TATTGTCTCT--------A--AATCTAAA---AAT-----A----GATTA-G--AATA-A-AAAA-G-T-------------A-G-T-----------------------TACTAGCACAATA---------GA---TA-TGC-TATTCTAGTAGGAGTGTCA--TGTATCACG-TTA---GTAAAGTTAAAA----GCATGGTA-AAt
gi|28 : gttcAA--AGGATATATAT-A--TA-GA-----AA-------------------T-ATAAGAATATCATAGTTAGGAGCTTAAAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCC
gi|3 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttg-T-ATAAGAAATACATAGTTAGTAGCTAAGAACGTC----AACGTTTTTTTTTGGCAAGTGTAAGAAAAGTACTA-------A----------------TGG--T---GAGCA---TTTATTTCTTTTCAT-AATGAGCAAAAATACAGCTACCATTC-TA---AGCTACCGACCAAA---CA------AT-TTATTTGTCATGAA-ACAC-TATTAGTTTTCG--TTT--CTTTTTGTTCTTAAGGTGAA--AATAAATTTATATTTTATCATT---GTA----CTTCCCC----TTTAAC--A-A---A----A-CACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG-------TAATGG------------------TTACT------GT--------GGTTTTGAGTT------TGCTATGT--GTAAT-T-AATC------TT------CCTAAC-T-----------TA--AA-------A-TATATA-TTC-T-------T--ACCTAAT-G-GTTCATTCACAATGTTTC-CTTGCAAGTACAG-----CATTAATCCC--------A--AATCTAAA---TAC-----A----GATAAGG--GG-G-G-AAAA-G-A-------------A-G-TTCCAG-----------------CTGCTAGAAAAATACAACTT-GGAA---AA-TAT-TATGCTTATAGCA--GTCAGCTGTTTTATG-CTG---GTTAAGTTAAAA-GTTGCATGATA-
gi|30 : aC-CTTGAAAATACTG-----CATTAACTCC--------A--AATTCACA---CAT-----A----GCCG---------------A-G-T-------------A-G-TTCCAG-----------------CTACTAGCATAACGCAACTT-GGAA---AA-TAT-TATACTAGTAGCA--GTCAGCGTTATAATA-CTA---TTAAAGTTAAAA-GGTGCATGA
gi|31 : -T-ATAAGAATAAGATGGTGTGTGGTTTAAAATGTC----ATC--GGTATTT-AGCGAGTGTAAGAAAAGTTATA-------T-AT----GCCAGCCATT
gi|32 : taC--------A--AATCTAAA---ATT-----A----GATGA-G--GA-G-A-AAAA-A---------------A-G-TTCCGG-----------------CTTCTAGCATAATACAGCAT-GGAT---A--TAT-TATGCTAGTACCA--GTTAGCTGTATTATG-CTA---ATAAAGTTAAAA-G--GAATGAattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|33 : TCATGAA-ACAC-TATTAGTTTCCA--CCA--CTTTTGGTTTTAAAGATGAA--AATAGATTTATATTTT---ATC---G-------T---CC----TAC-----A-A---A----A-TACAACGGT
gi|34 : GAGATTC-TA---AGCTACTAATCATG---TA------AT-TGATTTATCATAAA-TTGA-TATTGGTGTCTT--CCA--CATT---TTTAAA--GTGA------CAATTTATA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATAT--c
gi|37 : atggttt-TATGTATGTTAGTAGCA--TTCAACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATtgacaaaaca
gi|38 : ATATGGTTAGTAGCTTAGAATGTC----AGC--TGTAATTTGGCGAGTGTGAGAGAATTAATA-------A-AT----
gi|39 : AT-T--TAAGAATCATATGGTAAGTAACTTTGAATAGC----AGT--TGTATTTTGGCG
gi|4 : TACTTCTTTTAGT-CATGAGCCAAAATACAGCTCCCATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTTGGTTTTA--TCAATTTTTTTATTTTAAAGGTGAAAGAATATATATATATTTT-TCAAT---GCA-----------------T-----A-A---A----C-TACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA------TAACCAAACCAA---A-T-----ATTACA------GC--------AGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TGTAAC-C-----------T---GAAAC----A-TATAT--TT--T-------T--ACCTGAT-C-ATTCAGCCAAAAAATGTC-CTTACAAATACAC-----CATTTACTCT--------A--GATTTAAA---AAC-----A----GGTGA-----A-T-G-AAAATT-T-------------A-A-ATCTGA-----------------CTACCAGAATAGTACAGCTT-GGAA---A------------AGTACTA--GTTAGCTTTATTAGG-TCA---GT-------AAA-GCTGCATGATA-TATAgat
gi|40 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaat-CAA-T-ATAAGAATTACATGCTTAGTAACTTAGAATTTC----AGC--T
gi|41 : gATTACATGGTTAGTAGCTTAGAATGTC----AGG--TGTta
gi|5 : TATATTA--TAAGA-----AC---AA------AATACAT-TTATAAGAATTACATGGTTAGTAGCTGAGAATGCC----AG-----------------TGTAAGAAAATTAATA-------A-ATACATGCGAACCTTAGG--C---GAGCA---TATATTTCTTTTCGT-CACAAGCTAAAATACAGC--------------------------TG---TA------AT-TTTTTTATCATGAA-ACAT-TATTTGTTTTCA--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---T----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGTTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA--TTGAATGATA-AATGTtta
gi|6 : -ATAAGAATTACACGGTTAGTAGCTTAGAATATC----AGC--TGTATTTTGGCGAATGTAAGAAAAGTAATA-------G-AT----ACAAGCC---AG--C---AGGC--------TTTCT----------AAGCT---AT-TAGC---CA-TG-TA---ATCTATTTATCACG---AA------ACATTATTTGT------------------TTT-CA--CCA--TTTGTCGTTTAAAAAGTGAA--ACT-AATTTATATTTTGTCATT---GTA-----------------T-----A-A---A----A-TAC-GCAGTTAGCGGATAAAT-CTTATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA------TAATCGAACC-A---ACT-----ATTACA------GC--------GGTTTTGAGTT------TGCCATGT--GTATT-T-AATA------TT------TCGTAC-C-----------C---GA-------A-AATAT--GTG-T-------T--ACCTAAT-C-ATCCAACCACAAATTTTTGCTTGCCAATGCAG-----CA-TAAATCT--------A--GATTTAAA---AAT-----A----GATGA-G--AA-G-GAAAAA-G-T-------------A-G-TGATGG-----------------CTACTAGCATAATAAAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTGTG-TCA---GTAAAGTTAAAA-ATTGCATGGTA-AATAT
gi|7 : cTAATA-------ACAT----GC---CCATTAGATC---AAACA---TGCATTTT-----GT-GGGAAGCCAAG-TACAAC---CATCC-TATTCAAATTCTTCTTATG---TT------AT-ATATATAT---------AC-GATTTGTATTCA--ACA--CTTTTCGTTTGAAAGGTGAA--GATAAATTTTTATTTGTTCAAT---GCA----CTT--CC----TCTCAC--A-A---T----A-TACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA------TAG--GAACA-A---AAT-----AGTACG------GC--------GGTTTTAAGTTATACTTTGCTGTGT--GAATT-T-AATG------TA------TCTAAC-C-----------T---AAGTT----A-TATAA--TT----------T--ACGGAAT-A-ATTCAA-------GTTTC-CTTGCAAATACTG-----CATAAACTCC--------A--AATCTAAACGTAATTAAAAA----TATGA-G--GA-G-A-AAAA-G-A-------------A-G-TCCCGT-----------------TTACAAGAATAATACAGCTT-GGAA---AA-TAT-TATGCTGGTAGAC--GTCAGATGTATATTG-TTA---GTGAAGTTAAAA-GTTACATAATACAATt
gi|8 : agttttagaacatttGGCTAGTAGCTTGGAGCGTC----TGC--TGTATTTTGACGAGTGTTAAAAAAGTAATA-------A-AT----GGGAGCCTTCAT--CATGAAACA----CTATTTATTATCAC-CACgaaga
gi|8 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggTTCATCATGAA-ACAC-TATTTATTATCA--CCA--CTTTCTGTTTTAAAG---AA--GA-AAATTTATATTATGTCATT---GCA----C------------------A-A---A----A-TACGGCA------------AT-TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA------TAATCGAACT-AAATA-TTTTTGATTTTGTTTTTTGCTTTGATTTAGTTTTGATGT------TGCTATGT--GTATT-T-ACTA------TT------TGTAAC-C-----------CG--AA-------A-TGTATGGTTA-T----------ACCTAAT-C-ATTCAGCCACAAAATGTC-CTTGCAAATAAAG-----CA------------------------------AAT-----T----GGTGA-G--AA-----AAAA-G-T-------------A-G-TTCTGG-----------------TTACTAGCATAATACAGCTT-GGAA---AAATAG-TATGCTAATAGCA--GTCAGCTGTGTTATG-TTA---GTAAAGTTTAAA-GTTGCATGtttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|9 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccTAA--CAAGG-----AA----T------AAT-GA----ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TATATTC-GGAGAGTGTA-TAAAAGTAATA-------A-AT----ACAAGCCTTT---------------------------TCAT-CGCAAGTCAAAA-ACAGCCAACACTC-GC---AGCTTCTAACCATG---TA------AT-TTATTTATCATTAA-ACAC-CATTAGATTTCA--CCA--TTTTTCCTTTAAAAGGTGGT--AATATATTCATATTTTGTCATC----CACCTTCC---CC----TTTAAC--A-A---A----A-TACAGC------TGGACAAAT------------CACC---TGC-AGCAAAGTA---ATAGTACA-AAAAT-----------------CAAACCAA---A-T-----TTTACG------GC--------GGTTTTGAGTT------TGCTTTGT--GTATT-----TC------TT------TCTAAT-C-----------TA--AA-------A-TGTAT--TTT-T-------T--ACCTAAT-G-ATTCAATCACAGA----T-CTTG-AAAT---------------------------A--GACC------------------------A-G--GG-G-A-AAAA-G-T-------------A-A-TT-----------------------------ATAA-----CTTGGGAA---AA-TAT-CATGCTAGTAACA--GGCAGCAGTATTATG-TTA---TTGAAATCAAAA-GTTGCATAATA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 1 11 33 444444444 11 6666666666666666666666666666 66666666666666666666666 22222222 111111111111111111111111 1111111111 111111111111111 11111111111111111
lowQualScore : 5 5 1 1 33 44 999999999 33 222 6 77 0000000000000000000000000000 5555 22 1 5555555 1 3333 1 0 66666666 99999 0 2 444 2 444 0 1 0 333 666666 4 1 1 1 4 22 22 0 22 0 333 77777777777777777777777 1 666 4444 2 1 4 1 555555 44 22222222 55555 7777777 77777777 666666 2 22 2 2 777777 555555 2 888888888888888888888888 4 666 5555555555 44 777 4 5 1 3 44444 66666666 222 333 5555555555 2 22 2 666 2 111111111111111 2 2 0 44444444444444444 2 555 2 2 22 2 333 1 2 3
lowQualScore : . . . . .. .. ......... .. ... . .. ............................ .... .. . ....... . .... . . ........ ..... . . ... . ... . . . ... ...... . . . . . .. .. . .. . ... ....................... . ... .... . . . . ...... .. ........ ..... ....... ........ ...... . .. . . ...... ...... . ........................ . ... .......... .. ... . . . . ..... ........ ... ... .......... . .. . ... . ............... . . . ................. . ... . . .. . ... . . .
lowQualScore : 5 0 0 0 88 00 000000000 88 111 6 99 6666666666666666666666666666 7777 55 1 9999999 8 9999 3 5 77777777 22222 6 4 333 4 444 2 2 7 999 444444 4 1 9 9 2 66 55 8 44 1 333 00000000000000000000000 9 777 2222 0 7 2 9 888888 22 88888888 00000 2222222 22222222 111111 3 99 0 0 888888 888888 0 888888888888888888888888 0 333 9999999999 55 222 2 6 8 4 55555 66666666 888 333 2222222222 0 88 0 222 0 555555555555555 0 0 5 00000000000000000 0 888 0 0 88 1 777 1 4 6
consensus : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( family-4448 ) : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
gi|1 : AAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACA--------TTAA--ATCAAATATATTA--TAAGA-----AA---AA------AATGCAT-TTATAAGAATTACATGGTTAGTAGCTTAGAAT-TCG---AGC--TGTAATTTAGCGAGTTCAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGGA---TATATTCATTTTCGT-CACAAGCCAAAATGCAGCTGACATTC-TA---AGCTACTTACCATG---TG------TT-TTATTTATCATGAA-ACGT-TTTTTGTTTTCG--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---A----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-A-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGCTAGTAACA--TTCAGCTGTATTATG-TTA---ATAAAGTTAAAA-GTTGAATGATA-AATGTA
gi|10 : ta-T-GTAAGAATAATATGGTTTGTAGGTTAGCGTGTC----TGC--TGT-CTTTGACGAGTGTAAGAAAAGTAATT-------A-AT----GCAAGCCTTTA-------------------------TTCGT-CGCAAGCCA---------TGTTACT--TA---TGT-----ATCATGAAACA------ATCTTATTTTTC----A-ACAC-TTTTTGT---------------------TAAAAGGTGAA--CATAAATTCATATTTTGTCAAC---GCA----CT---TCACTTTTT-----ACA---A----ATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA------TTATCGAACCAA---A-T-----ATTACA------TC--------A-----AAGTT------TCCT-TGTAAATACTGT-AATGCAATAACT------CCAAAC-C-----------T---AA-------A-AATA
gi|10 : CAAAGTTTC-CTTGTAAATACTGTAATGCAATAACTCC--------A--AACCTAAA---AAT-----A----GACGA-G--GA-G-C-AAAA-G---------------A-GTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAAAACTT-GGAA---AA-TAG-TCCGCTGATAGCC--GTAAACTGTATT-------------AAATTTAAC-GTTGCATTATA-AATATgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|11 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatCTACTAACCATG---TC------AC-TTATTTATCACGAA-ACAC-TATGTGTTTTCA--CCA--CTTTTCAATGAAAATATGAA--AACAAgc
gi|11 : GGTGAA--AATAAATATATATTTTGTCATC---GCA-----------------T-----A-A---A----A-TAC-------AGCGGACGAAT-CTTAAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGATAGGCCTAATCGAACC-A---ACT-----ATTACA------GC--------GTTTTTGGGTT------TGCCAT-T--GTATT-T-AATA------TT------TCTAAT-C-----------CGCAGA-------A-TATAT--TTGTT-------T--ACCTAAT-C-ATTCAATCGTAACATTTC-CTTGCCAATGCCG-----TATTAACTCT--------T--GATTTAAA---AAT-----A----GACGA-G--GA-GTG-ACGG-G-TTTTAGTTCTGATCA-G-TTCTGG-----------------CTACTAGCATAATAAAGCTC-TGAA---AA-TAT-TATACTACAAGCA--GTCAGCGGTATTATA-TTA---Gggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|12 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttAAATACATAA--TAAAACTA--AAGGTAA------AAT--AT---ATAAGCATTACATGGT----A----AAAATATC----AGC--CG-AGTTTAGCGAGTGTAAGAAAAGTAATA-------A-GT----GCACGCCTTTAG--
gi|12 : AGTTCACACTT-TA---AAAAACTAACCATG---CA------AA-TTATATAGCATGACTACA--TATAAGTTTTGA--CCA--CTT------------ATGAA--AATAAATATAAACTTTGTTATC---GCA----TTTACCC----TTTTAAC-A-A---A----A-TACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA------TAATCAAACTAA---A-T-----ATTACA------GC--------GGTTTTGAGTT------TGATACGC--GTATT-T-AATGA-----TT------TTTACC-C-----------T---AA-------A-TAAA----TG-TC------T--ACTGAAT-G-ACTAAACTCCAAA----C-----CAAA-AC---------------------------------AAG---AAT-------------GA-G---A-G-G-AAAA-G-T-------------A-G-TTCTGA-----------------CAACTAGCACAAAAATGCTT-GGAttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|13 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttGAGCATAAGAAAAGTAATA-------A-AT----GCGAGCCTTTAT--C---GTGTAATTTATATTTCATT
gi|13 : ATCGTG---TA------AT-TTATATTTCATTAA-ACAT-TATTAAGTTTCA--TCA--CCGTTTGATTAGAAGGTGAA--CATAAATTTATATTTTGACATCAATGTT----CT---CC----TTTTTC--A-A---A----A-TACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA------TAATTGAACC-AG--A-T-----ATTACA------GC--------GGTTTTGAGTT------TGCTATGT--GTTTT-T-AGTG------TT------TCTAAT-C-----------A---AATACAATTA-TATAG--TT--T-------T--ACCT-AT-C-A--CAAAC-TTAAGTTTC-CTTGCAAATGCAG-----CATTAACTAC--------T--AATCAACA---GAT-----A----GATGA-G--GG-G-----CA-G-T-------------A-G-TTCTGG-----------------TAACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGAGGCA--GTCAGCTGaaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|14 : gagcataagaaaagtaataaatgcgagcctttTC----AGC--TGTATTTTGCCGATTGTAAGAAAAGTAAC--------A-AT----GTGAGAATTTGG--C---GA
gi|14 : AA-ACAG-TATCAATACTCA--TCA--CTTTTTATCTAAA----------------TTA-ATTTTGCCATC---GCA----CTTC-CC----TTT-----T-A---ACAGGA-TACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCAAA-AAAGTAGTaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|14 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaTATT-T-GATA------TT------TCTAAC-T-----------T---AA-------A-TATA----TA-T-------TAAACCTAAT-A-ATTCAATCACAAAATGAT-CTTGTGAATACAG-----CATTAATTTC--------A--AATTTAGA---TTT-----A----GA-AA-G--GG-G-G---AT-G-T-------------A-G-CTCTGG-----------------TTAGTAGCGTAATACAGCTA-GGAAAATAA-TAT-TAAGCTTATAGCA--GTGAGCTTTATAATGCTTC---ATAA---TAAAA-Gacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|15 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatt-T-ATAACAATTTCATGGTTAGTAGCTTAGTATGTCTCATAGC--TGTATCTTTGTGAGTGTAAGAAAAGTAATA-------A-AT----TTGAGCC----------------------ATTTCTTTTCAA-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TACATGTAAT-TCATTTATCATTAA-ACAC-T----------------------TCATTTAAAAGGTGAA--CACAAATTGATATTTTGACATT---GCA----CTT--CC----TCTTTAACA-A---A----A-TTTGGCAGTTAGTGGATTAAT-TTTTAGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC------TAATCAAACCAA---A-T-----GTTATT------GG--------GGATTGGAGT----------TA-------ATA-T-AATG------TT------TTTGAT-G-----------TA--AA-------A-TGTAG--TTT-T-------T--ACCTTAT-G-ATTCAATCTCAAATTTTC-CTTGCAAATACTA-----CAattacggtcaacttactagatgta
gi|16 : taATTATGACGAGGGTAAGAAAAGTTATA-------T-AT----ACGAGCCTTT----------------------------CAT-TACGAGCCAAAACACAGGTGACATTC-TT---AGTTACAAACCGTG---TA------AT-TAATGTATCATGCA-ACAC-TAGTAGCTTTCA--TCA--CTTTTCGTTTAAAAAGTGAA--AAAACAT---CATTTCATCTTT---GCA----CTA--CC----TCTTTAACA-A---A----A-TACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAGTTCG--------------------------------------------------------TTGAGTT-----------------TATT-T-GATG------TT------TCTAAT-CTGATATCATATT---AA-------A-TACAT--TTA---------T--ACCTGAA-C-ATT
gi|17 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgtgaattcaggcgggtaGCA---TTTATTACTTTTCTTACACTCGCCAAAATATAGCTGACATGC-TA---AGATACTAACCACG---TA------AT-TTAATTA-----AA-ACAC-TATCA-TTTTCG--CTA--CTTTTTGTTTTAAAGGCGAA--CATAAAT--ATATTTTAGCATT---GTA----CTTCCCC----TTT-----A-ACAAA----A-TACGGCAGTTAGCGGATGCAC-TTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA------TAAT-------------------ACTATG------TC-----------TTTG----------TGCTATGG--GTATC-T-AATG------TTGCTTTTTTTTAC-C-----------T---AA-------AATATAG--GTG-T-------TT-ACGTAAT-G-ACTCAACCATAAAGCTTT-TTTGCAAATACCG-----TATTTACCCC--------ATCGATTTAAA---
gi|18 : AATTACATGGTAAGTGGCTTAAAATGTC----AGC--TGTATTTTGGTGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TGTATTTCATTTCGT-CACGAGCCAACATGTA------ATTT-------------------------------AT-TT----ATCATGAA-ACACATTTTGTTTTTCATTCTT--TTTTTCGTTTAAACGGTGAA--AATAAACTTATA-TTTACTATT---GCA-----------------T-----A-A---A----A-TACGACAGTTAGCGGATGAAT-CTTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA------TAATCAAACCAA---A-T-----ATTACT------GT--------AGATTTAGGTT------TGCCATGT--GTATT-T-AATA------TT------TCTAAC-A-----------T---GA-------A-ACTAT--TTGTT-------T--ACGTAAT-C-ATgagcttttgttcaaaatacatgtagcaaactta
gi|19 : t--CTTTTTGTTTAAATGGTGTA--A-TAAATTTGTATTTTGTCATT---GTA----CT---TCCGC-TTT-----A-ACAAA----A-TACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA------TAAACAAACA-A---AAT-----ATTACG------GT--------GGTTTTGAGTT------TGCTACGT--GTGTT-T-ATTG------TT------TTTAACGT-----------T---AA-------A-TATAT--TT--T-------T--ACCTGAT-C-ATTAAATCACAAAGTTTC-CTTGTAAATATTA-----TGTTAA-TAC--------A--AATC
gi|2 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttattt-T-ATAAGAATCACATGGTTAGTAGCTTAGAATGTC----AGC--TGTAT-------------AGAAAAGTAATACATTGTAA-AT----GCGAACATTTGG--T---GAGCA---TTTATTTCTTTTTGT-CATGAGCTAATATACAGCTGACACTCGTA---AGTTACTAACCGTG---TA------AT-TTGTTTATCTTAAA-TTGC-TATTGGTTTTCA--CCA--TTTTTCATTTAAAAGGTGAA--AATAAATTTATATATTGTCATC---TCG----CTTCCCC----TTTCAC--A-A---A----A-TA
gi|2 : taTCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA------TAATCAAACC-A---AAT-----ATTACG------GC--------GGTTTAGAGTT------TGTT-TGT--TTATT-T-AATG------TT------TCTAAC-C-----------A---AA-------ACTATAT--TTT-T-------T--ACCTAAT-TGAATCAATCACAAACTTTC-CTTTCAATTACTG-----CATTAACTCC--------A--AATCTTAA---AAT-----A----GATCA-G--GA-G-A-AAAA-GGT-------------A-G-TTCTGG-----------------CTACTAGCATAATACAGCTT-CAAA---AA-TAT-TATGCTATTAGCA--GTCGGGTGTATTAAG-TCA---GTAAAGTTAAAATGTTGCATGATA-AAaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|20 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgAATCACCTACAGCAAA-GAAATAGTTCGA------TAATTGAAAC-A---T-T-----TATGCG------GC--------CGTTTTGAGTT------TGCTATTT--GTATT-TTAATA------TT------TCTAAT-C-----------T---AAT------A-TATAT--CTA-TACAGTTTT--ACCTTAT-G-ATTCAATCACATAGTTTC-CTTGCAAATACAG-----CATTAAGTCT--------A--AATCTAAA---AAT-----A----GATGA-A--GG-GAG-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCAAAATGCAGCCT-GGGA---AA-TAT-TACGCAAACAGTA--GTCTGCTGCATTATG-CTT---GTTATGTAAAAA-GTTGCAactaattaatgtaattat
gi|21 : aAAAAGTAT--GACTTTTGATTCATTGAGCAGCTCTATTTTAT--GTG---TATATCAGTTAATA-----AA---AT------AA--------ATAAGAATTACATGGCTAGTAGCTTGGTATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TTTATTTCTTATTGT-TACAAGC
gi|21 : tatGCTGTTAGCAGATGAAT-TTCGAAAACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA------TAATTGAACCAA---A-T-----ATTATG------AT--------GGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|22 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcatttatttcttattgttacaa-ATAATAATTATATTATTAGTAGCTTAGAATGAC----AGC--TGTATTTTAGCGAGTGTAAGAAAATTATTA-------G-CT----GCTGTCTTTTGG--C---AAGCA---TGTATTTCTTTTTGT-CCCGAGCCAAAATACAGCTGACATTC-T
gi|23 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttataa-T-ATAAGAATAACGTGGTTAGTAA--TAG-ATG-C----AA----GTA-TTTGGCGAGgtcgttaaacaagttgttac
gi|23 : ataaataAGTAATA-------G-AT----GCAAGTATTTGG--C---GAGCA---TTTATTTCTTTTCGT-CACAAGCCAAATGACAGCTGACATTT-TA---AGCT-CTAACCATA---TA------AT-TTATTCATCATAAA-ACAC-CATT-------A--TCA--TTTTTGGTTTAAAAGGTGAA--AACA----TGT-TTTTGTCATC---GCACAT-CC---CC----TTT-----A-A---catttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|24 : ataaatatataagaataacgtggtt-T-------T--ACCTAATGCGACTCAATTACAAAATTTC-GTTGCAAATGCCG-----CTTTAACTCTTTATAGAAA--GATATATA---AAT-----ATTGAAAGGA-GTTGG-G-G-TGGG-G-T-------------ATG-TATTGA------------------TGCTATCTTAATATAGCTT-TGGA---GA-TAT-TATACTAGTAGCA--ATCAGCTGAATTATG-TTC---GTTAAtaaa
gi|25 : AAAAATAT--AATTTATCA---ACTAAACG--------GTCACTATAAAAAATGTAA--GAAAACATTTAA---ACTTTGGTATT-CATAC-ATAAGAATTACATGGTTAGTAGCTTAGAATATC----GGC--TGTA-TTTGTCGAGTGTAAGAAGAGCAATA-------A-GT----TCGAGCCCTTGG--C---GAGTA---TTTATTTtt
gi|26 : cTTC-CTTGCCAATGCAG-----CATTAACTCT--------A--GATTTAAA---AAT-----A----GATGA-G--GG-G-G-TAAA-G-T-------------T-A-TTCTGA-----------------CTACTAGCATATTACAGCTT-GAAAC--AG-TAT-TATGCTAGTAGCA--GTTAGCTGTAATATG-CTA---GTAAAGTTCAAA-ATTGAATGATA-AATATAatca
gi|27 : -------T--ACATAAT-G-ATTCAA--------TTTT-TTTGCGAATAATG-----TATTGTCTCT--------A--AATCTAAA---AAT-----A----GATTA-G--AATA-A-AAAA-G-T-------------A-G-T-----------------------TACTAGCACAATA---------GA---TA-TGC-TATTCTAGTAGGAGTGTCA--TGTATCACG-TTA---GTAAAGTTAAAA----GCATGGTA-AAt
gi|28 : gttcAA--AGGATATATAT-A--TA-GA-----AA-------------------T-ATAAGAATATCATAGTTAGGAGCTTAAAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCC
gi|3 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttg-T-ATAAGAAATACATAGTTAGTAGCTAAGAACGTC----AACGTTTTTTTTTGGCAAGTGTAAGAAAAGTACTA-------A----------------TGG--T---GAGCA---TTTATTTCTTTTCAT-AATGAGCAAAAATACAGCTACCATTC-TA---AGCTACCGACCAAA---CA------AT-TTATTTGTCATGAA-ACAC-TATTAGTTTTCG--TTT--CTTTTTGTTCTTAAGGTGAA--AATAAATTTATATTTTATCATT---GTA----CTTCCCC----TTTAAC--A-A---A----A-CACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG-------TAATGG------------------TTACT------GT--------GGTTTTGAGTT------TGCTATGT--GTAAT-T-AATC------TT------CCTAAC-T-----------TA--AA-------A-TATATA-TTC-T-------T--ACCTAAT-G-GTTCATTCACAATGTTTC-CTTGCAAGTACAG-----CATTAATCCC--------A--AATCTAAA---TAC-----A----GATAAGG--GG-G-G-AAAA-G-A-------------A-G-TTCCAG-----------------CTGCTAGAAAAATACAACTT-GGAA---AA-TAT-TATGCTTATAGCA--GTCAGCTGTTTTATG-CTG---GTTAAGTTAAAA-GTTGCATGATA-
gi|30 : aC-CTTGAAAATACTG-----CATTAACTCC--------A--AATTCACA---CAT-----A----GCCG---------------A-G-T-------------A-G-TTCCAG-----------------CTACTAGCATAACGCAACTT-GGAA---AA-TAT-TATACTAGTAGCA--GTCAGCGTTATAATA-CTA---TTAAAGTTAAAA-GGTGCATGA
gi|31 : -T-ATAAGAATAAGATGGTGTGTGGTTTAAAATGTC----ATC--GGTATTT-AGCGAGTGTAAGAAAAGTTATA-------T-AT----GCCAGCCATT
gi|32 : taC--------A--AATCTAAA---ATT-----A----GATGA-G--GA-G-A-AAAA-A---------------A-G-TTCCGG-----------------CTTCTAGCATAATACAGCAT-GGAT---A--TAT-TATGCTAGTACCA--GTTAGCTGTATTATG-CTA---ATAAAGTTAAAA-G--GAATGAattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|33 : TCATGAA-ACAC-TATTAGTTTCCA--CCA--CTTTTGGTTTTAAAGATGAA--AATAGATTTATATTTT---ATC---G-------T---CC----TAC-----A-A---A----A-TACAACGGT
gi|34 : GAGATTC-TA---AGCTACTAATCATG---TA------AT-TGATTTATCATAAA-TTGA-TATTGGTGTCTT--CCA--CATT---TTTAAA--GTGA------CAATTTATA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATAT--c
gi|37 : atggttt-TATGTATGTTAGTAGCA--TTCAACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATtgacaaaaca
gi|38 : ATATGGTTAGTAGCTTAGAATGTC----AGC--TGTAATTTGGCGAGTGTGAGAGAATTAATA-------A-AT----
gi|39 : AT-T--TAAGAATCATATGGTAAGTAACTTTGAATAGC----AGT--TGTATTTTGGCG
gi|4 : TACTTCTTTTAGT-CATGAGCCAAAATACAGCTCCCATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTTGGTTTTA--TCAATTTTTTTATTTTAAAGGTGAAAGAATATATATATATTTT-TCAAT---GCA-----------------T-----A-A---A----C-TACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA------TAACCAAACCAA---A-T-----ATTACA------GC--------AGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TGTAAC-C-----------T---GAAAC----A-TATAT--TT--T-------T--ACCTGAT-C-ATTCAGCCAAAAAATGTC-CTTACAAATACAC-----CATTTACTCT--------A--GATTTAAA---AAC-----A----GGTGA-----A-T-G-AAAATT-T-------------A-A-ATCTGA-----------------CTACCAGAATAGTACAGCTT-GGAA---A------------AGTACTA--GTTAGCTTTATTAGG-TCA---GT-------AAA-GCTGCATGATA-TATAgat
gi|40 : acctcaattccatttatatatatgtatatagatatggaatataagactaacactatatagtagcttattatggcgataaagaaataagaaat-CAA-T-ATAAGAATTACATGCTTAGTAACTTAGAATTTC----AGC--T
gi|41 : gATTACATGGTTAGTAGCTTAGAATGTC----AGG--TGTta
gi|5 : TATATTA--TAAGA-----AC---AA------AATACAT-TTATAAGAATTACATGGTTAGTAGCTGAGAATGCC----AG-----------------TGTAAGAAAATTAATA-------A-ATACATGCGAACCTTAGG--C---GAGCA---TATATTTCTTTTCGT-CACAAGCTAAAATACAGC--------------------------TG---TA------AT-TTTTTTATCATGAA-ACAT-TATTTGTTTTCA--TCA--GTTTTCGTTTAAAATGTGAA--AATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---T----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT-----------A-T-----ATTACA------AC--------GGTTTTCGGTT------TGCCTTGT--GTATT-T-AATA------TT------TCTAAC-C-----------T---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGTTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA--TTGAATGATA-AATGTtta
gi|6 : -ATAAGAATTACACGGTTAGTAGCTTAGAATATC----AGC--TGTATTTTGGCGAATGTAAGAAAAGTAATA-------G-AT----ACAAGCC---AG--C---AGGC--------TTTCT----------AAGCT---AT-TAGC---CA-TG-TA---ATCTATTTATCACG---AA------ACATTATTTGT------------------TTT-CA--CCA--TTTGTCGTTTAAAAAGTGAA--ACT-AATTTATATTTTGTCATT---GTA-----------------T-----A-A---A----A-TAC-GCAGTTAGCGGATAAAT-CTTATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA------TAATCGAACC-A---ACT-----ATTACA------GC--------GGTTTTGAGTT------TGCCATGT--GTATT-T-AATA------TT------TCGTAC-C-----------C---GA-------A-AATAT--GTG-T-------T--ACCTAAT-C-ATCCAACCACAAATTTTTGCTTGCCAATGCAG-----CA-TAAATCT--------A--GATTTAAA---AAT-----A----GATGA-G--AA-G-GAAAAA-G-T-------------A-G-TGATGG-----------------CTACTAGCATAATAAAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTGTG-TCA---GTAAAGTTAAAA-ATTGCATGGTA-AATAT
gi|7 : cTAATA-------ACAT----GC---CCATTAGATC---AAACA---TGCATTTT-----GT-GGGAAGCCAAG-TACAAC---CATCC-TATTCAAATTCTTCTTATG---TT------AT-ATATATAT---------AC-GATTTGTATTCA--ACA--CTTTTCGTTTGAAAGGTGAA--GATAAATTTTTATTTGTTCAAT---GCA----CTT--CC----TCTCAC--A-A---T----A-TACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA------TAG--GAACA-A---AAT-----AGTACG------GC--------GGTTTTAAGTTATACTTTGCTGTGT--GAATT-T-AATG------TA------TCTAAC-C-----------T---AAGTT----A-TATAA--TT----------T--ACGGAAT-A-ATTCAA-------GTTTC-CTTGCAAATACTG-----CATAAACTCC--------A--AATCTAAACGTAATTAAAAA----TATGA-G--GA-G-A-AAAA-G-A-------------A-G-TCCCGT-----------------TTACAAGAATAATACAGCTT-GGAA---AA-TAT-TATGCTGGTAGAC--GTCAGATGTATATTG-TTA---GTGAAGTTAAAA-GTTACATAATACAATt
gi|8 : agttttagaacatttGGCTAGTAGCTTGGAGCGTC----TGC--TGTATTTTGACGAGTGTTAAAAAAGTAATA-------A-AT----GGGAGCCTTCAT--CATGAAACA----CTATTTATTATCAC-CACgaaga
gi|8 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggTTCATCATGAA-ACAC-TATTTATTATCA--CCA--CTTTCTGTTTTAAAG---AA--GA-AAATTTATATTATGTCATT---GCA----C------------------A-A---A----A-TACGGCA------------AT-TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA------TAATCGAACT-AAATA-TTTTTGATTTTGTTTTTTGCTTTGATTTAGTTTTGATGT------TGCTATGT--GTATT-T-ACTA------TT------TGTAAC-C-----------CG--AA-------A-TGTATGGTTA-T----------ACCTAAT-C-ATTCAGCCACAAAATGTC-CTTGCAAATAAAG-----CA------------------------------AAT-----T----GGTGA-G--AA-----AAAA-G-T-------------A-G-TTCTGG-----------------TTACTAGCATAATACAGCTT-GGAA---AAATAG-TATGCTAATAGCA--GTCAGCTGTGTTATG-TTA---GTAAAGTTTAAA-GTTGCATGtttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|9 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccTAA--CAAGG-----AA----T------AAT-GA----ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TATATTC-GGAGAGTGTA-TAAAAGTAATA-------A-AT----ACAAGCCTTT---------------------------TCAT-CGCAAGTCAAAA-ACAGCCAACACTC-GC---AGCTTCTAACCATG---TA------AT-TTATTTATCATTAA-ACAC-CATTAGATTTCA--CCA--TTTTTCCTTTAAAAGGTGGT--AATATATTCATATTTTGTCATC----CACCTTCC---CC----TTTAAC--A-A---A----A-TACAGC------TGGACAAAT------------CACC---TGC-AGCAAAGTA---ATAGTACA-AAAAT-----------------CAAACCAA---A-T-----TTTACG------GC--------GGTTTTGAGTT------TGCTTTGT--GTATT-----TC------TT------TCTAAT-C-----------TA--AA-------A-TGTAT--TTT-T-------T--ACCTAAT-G-ATTCAATCACAGA----T-CTTG-AAAT---------------------------A--GACC------------------------A-G--GG-G-A-AAAA-G-T-------------A-A-TT-----------------------------ATAA-----CTTGGGAA---AA-TAT-CATGCTAGTAACA--GGCAGCAGTATTATG-TTA---TTGAAATCAAAA-GTTGCATAATA-
blockSeqs : T C T A . TT AGCTCTATT CT AAA A GT CATTTAAACTTTGGTATTCATAC TCAT GT C CATTGTA C ACAT A ATCATG ATTTA A TGT G TTC A AAA CATGTA C G T A T TT AT AG AAT TTTACCCTTTTAAC C CAA CAGG T G C T TAGGCC CG TAAATA TTTTG GTTTTTT TTTGATTT ATACTT A AA G T CAATAA GCTTTT G TGATATCATATTAA A TGG ATACAGTTT AA GCG T G G T TAATG TTATAGAA TCG CGT TAAAAA G TT T TG T TTTTAGTTCTGATC T T AGAAAGAGAATTTTCAT G AAT A G GT C ATT A T C
blockSeqs : . . G . GAT C . CTAAAGGTAAAATAT . . G . . . A AGATC TT . TCA . . A . . A G . . T . . . . CCTTCCCCTTTAAC . CAA . . A . . . CG CAAA . A . . A . . . A . . AAATACAATT C TA GTT T TG C A . C . . A . ATTGA . . . AG . GT . . . . C . . . . . A . .
blockSeqs : . . G A . ACAAAATACATTT . . T . . . G ATC TG . TGA . . A . . . T . . A . . . . CTTCCTCTTTAAC . . . . G . . . CA CAAC . A . . A . . . . . . CGCAGA . T GTC . C A G . A . . G . A . . . GA . T . . . . . . . . . . T . .
blockSeqs : T . AATAATGA . . T . . . G GGC TT . TGA . . A . . . T . . A . . . . CTACCTCTTTAAC . . . . T . . . TG TAAA . A . . A . . . . . . TGAAAC . G GTT . G T A . A . . A . A . . . C . T . . . . . . . . . . T . .
blockSeqs : A . AAATAA . . T . . . G GGT TT . TGA . . A . . . G . . A . . . . CTTCCCCTTTCAC . . . . G . . . CA CAGA . A . . A . . . . . . TAAGTT . G AT . C T T . T . . A . A . . . G . T . . . . . . . . . . A . .
blockSeqs : . . AAT . . T . . . G GGT TG . TGA . . A . . . G . . A . . . . CTTCCCCTTTAAC . . . . G . . . CA CAAA . T . . A . . . . . . TAAA . T TT . A C G . C . . A . A . . . G . T . . . . . . . . . . A . .
blockSeqs : . . T . . . A GGT TT . TGA . . A . . . A . . A . . . . CTTCACTTTTT . . . . G . . . CA CAAA . G . . A . . . . . . TAAT . G GT . G T G . T . . A . A . . . A . T . . . . . . . . . . T . .
blockSeqs : . . T . . . G GGC TT . TGA . . A . . . A . . G . . . . CTTCCTCTCAC . . . . G . . . CA AAAA . T . . A . . . . . . TAAA . T TT . C T C . T . . A . A . . . G . T . . . . . . . . . . A . .
blockSeqs : . . T . . . A GGC TT . TAC . . A . . . G . . G . . . . CTCCTTTTTC . . . . G . . . TG CAAA . G . . A . . . . . . CGAA . T CT . G T G . A . . G . A . . . G . T . . . . . . . . . . A . .
blockSeqs : . . T . . . T GGC TA . TCC . . A . . . G . . A . . . . CTTCCCCTTT . . . . G . . . TG CAAA . G . . A . . . . . . TAAA . T GT . C T A . C . . G . A . . . A . A . . . . . . . . . . A . .
blockSeqs : . . T . . . A GGT TG . CAA . . T . . . A . . A . . . . CTTCCGCTTT . . . . A . . . GG CAAA . G . . T . . . . . . TAA . T GT . C T G . A . . A . A . . . G . T . . . . . . . . . . A .
blockSeqs : . . T . . . G GGC C . . . . T . . . G . . G . . . . CATCCCCTTT . . . . T . . . CA CAAC . G . . A . . . . . . TAA . T AT . G C A . T . . A . A . . . A . T . . . . . . . . . . A .
blockSeqs : . . A . . . G AGC . . . . . . . . . G . . T . . . . CTTCCCTTT . . . . G . . . CG AAAA . T . . G . . . . . . TAA . T TT . G C A . A . . A . A . . . G . T . . . . . . . . . . G .
blockSeqs : . . T . . . C A . . . . . . . . . G . . T . . . . TCCTAC . . . . C . . . CG CAAA . A . . A . . . . . . TAA . T T . G C T . T . . A . A . . . G . T . . . . . . . . . . A .
blockSeqs : . . T . . . G . . . . . . . . . . T . . T . . . . T . . . . G . . . CA CAT . A . . T . . . . . . TGA . A A . C C G . A . . G . A . . . A . A . . . . . . . . . . G .
blockSeqs : . . T . . . A . . . . . . . . . . . T . . . . T . . . . A . . . G A . A . . . . . . . . . TAA . T T . C T A . A . . G . A . . . A . T . . . . . . . . . . . .
blockSeqs : . . T . . . G . . . . . . . . A . . . . T . . . . . . . . . . . G . . . . . . . . . AAA . . T . C . . . A . . G . T . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . T . . . . . . . . . . . G . . . . . . . . . TGA . . . . A . . . T . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . CGA . . C . . A . . G . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : CAAATAN********************* **** CG CAAA****
originalCons : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGA-----AA---AN------AAT-CAT-T-ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACC-A---A-T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
finalCons : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATNA--TAAGACAAATAN---------------------ATAAGAATTACATGGTTAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAA--AATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACCAAA----T-----ATTACG------GC--------GGTTTTGAGTT------TGCTATGT--GTATT-T-AATG------TT------TCTAAC-C-----------T---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-G-T-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1 1 11 33 444444444 11 11 555555555555555555555555 1111111 111111111111111111 66666666666666666666666 111 1111111 1111111111 1111111111111 11111111111111111
lowQualScore : 5 5 1 1 33 44 999999999 33 222 00 66 5 3 555555555555555555555555 777 3 3333333 4444 1 5555 22 0 5555555 1 3333 1 1 666666666666666666 0 2 444 2 444 0 1 0 333 666666 4 1 1 1 4 22 22 0 22 0 333 77777777777777777777777 1 666 4444 2 1 4 1 555555 3 1 6666666 7777777 77777777 2 666666 1 22 2 2 777777 555555 2 2 111 5555555 4 666 5555555555 44 777 4 5 1 3 44444 66666666 222 333 5555555555 2 22 2 666 4 1111111111111 2 2 0 44444444444444444 2 555 2 2 22 2 333 1 2 3
lowQualScore : . . . . .. .. ......... .. ... .. .. . . ........................ ... . ....... .... . .... .. . ....... . .... . . .................. . . ... . ... . . . ... ...... . . . . . .. .. . .. . ... ....................... . ... .... . . . . ...... . . ....... ....... ........ . ...... . .. . . ...... ...... . . ... ....... . ... .......... .. ... . . . . ..... ........ ... ... .......... . .. . ... . ............. . . . ................. . ... . . .. . ... . . .
lowQualScore : 5 0 0 0 88 00 000000000 88 111 99 99 0 4 777777777777777777777777 000 1 4444444 7777 8 4444 44 7 7777777 7 7777 9 1 111111111111111111 6 4 333 4 444 2 2 7 999 444444 4 1 9 9 2 66 55 8 44 1 333 00000000000000000000000 9 777 2222 0 7 2 9 888888 2 6 5555555 2222222 22222222 1 111111 1 99 0 0 888888 888888 0 0 555 5555555 0 333 9999999999 55 222 2 6 8 4 55555 66666666 888 333 2222222222 0 88 0 222 0 0000000000000 0 0 5 00000000000000000 0 888 0 0 88 1 777 1 4 6
consensus : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATN-A--TA-AGA-C--------A-------------A---A-TAT------AT----AAGAATTACATGGT-TAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---T-TATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAAA--ATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACCAAATA-------TTACG------GC--------GGTTTTGA-GTT------TGCTATGT--GTATT-T-AATG------TT------TC-TAAC-CT---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-GT-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
Reference ( family-4448 ) : NNAAATAAATAAACATTACAATATATAACTGACTANACATNAGAAAAATAT--AATTTATCAT-CATTAAACG--------TTAA--ATGAAATATATN-A--TA-AGA-C--------A-------------A---A-TAN------AT----AAGAATTACATGGT-TAGTAGCTTAGAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGCA---TNTATTTCTTTTCGT-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTNGTTTTCA--CCA--CTTTTCGTTTAAAAGGTGAAA--ATAAATTTATATTTTGTCATC---GCA----CT---CC----TTT-----A-A---A----A-TACGGCAGTTAGCGGATGAAT-TTTAAGTACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTTCGA------TAATCGAACCAAATA-------TTACG------GC--------GGTTTTGA-GTT------TGCTATGT--GTATT-T-AATG------TT------TC-TAAC-CT---AA-------A-TATAT--TTG-T-------T--ACCTAAT-C-ATTCAACCACAAAGTTTC-CTTGCAAATACNG-----CATTAACTCC--------A--GATCTAAA---AAT-----A----GATGA-G--GA-G-G-AAAA-GT-------------A-G-TTCCGG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA-GTTGCATGATA-AATATA
gi|1 : AAATAAATAAACATTACAATATA-AA-TGACTAGACATCAAAAGAATATTGAATAGATCATACATTAAACA--------TTAA--ATCAAATATATT-A--TA-AGA-A--------A-------------A---A-AATGCATTTAT----AAGAATTACATGGT-TAGTAGCTTAGAAT-TCG---AGC--TGTAATTTAGCGAGTTCAAGAAAAGTAATA-------A-AT----GCGAGCCTTTGG--C---GAGGA---TATATTCATTTTCGT-CACAAGCCAAAATGCAGCTGACATTC-TA---AGCTACTTACCATG---TG------TT-TTATTTATCATGAA-ACGT-TTTTTGTTTTCG--TCA--GTTTTCGTTTAAAATGTGAAA--ATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---A----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCGCATGCAGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT--------ATA-------TTACA------AC--------GGTTTTCG-GTT------TGCCTTGT--GTATT-T-AATA------TT------TC-TAAC-CT---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-GT-------------A-A-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGCTAGTAACA--TTCAGCTGTATTATG-TTA---ATAAAGTTAAAA-GTTGAATGATA-AATGTA
gi|10 : taT----AAGAATAATATGGT-TTGTAGGTTAGCGTGTC----TGC--TGT-CTTTGACGAGTGTAAGAAAAGTAATT-------A-AT----GCAAGCCTTTA-------------------------TTCGT-CGCAAGCCA---------TGTTACT--TA---TGT-----ATCATGAAACA------ATCTTATTTTTC----A-ACAC-TTTTTGT---------------------TAAAAGGTGAAC--ATAAATTCATATTTTGTCAAC---GCA----CT---TCACTTTTT-----ACA---A----ATTACGGCAATTAGCGGATGAAT-TTTAAGTACAAAATCGCATATTGGCGAATCACATACAACAAA-CAAATAGTTCCA------TTATCGAACCAAATA-------TTACA------TC--------A-----AA-GTT------TCCT-TGTAAATACTGT-AATGCAATAACT------CC-AAAC-CT---AA-------A-AATA
gi|10 : tgCAAAGTTTC-CTTGTAAATACTGTAATGCAATAACTCC--------A--AACCTAAA---AAT-----A----GACGA-G--GA-G-C-AAAA-G--------------A-GTTTCCGGAGAAAGAGAATTTTCATCTTCTAACATATAAAAACTT-GGAA---AA-TAG-TCCGCTGATAGCC--GTAAACTGTATT-------------AAATTTAAC-GTTGCATTATA-AATATgacgaggagcaaaagagtttccggagaaagagaattttcatcttctaacatataaaaacttggaaaatagtccgctgatagccgtaaactgtattaaatttaacgttgcattataaatatgc
gi|11 : tgtaagaataatatggtttgtaggttagcgtgtctgctgtctttgacgagtgtaagaaaagtaattaatgcaagcctttattcgtcgcaagccatgttacttatgtatcatgaaacaatcttatttttcaacactttttgttaaaaggtgaacataaattcatattttgtcaacgcacttcactttttacaaattacggcaattagcggatgaattttaagtacaaaatcgcatattggcgaatcacatacaacaaacaaatagttccattatcgaaccaaatattacatCTACTAACCATG---TC------AC-TTATTTATCACGAA-ACAC-TATGTGTTTTCA--CCA--CTTTTCAATGAAAATATGAAA--ACAAgc
gi|11 : GGTGAAA--ATAAATATATATTTTGTCATC---GCA-----------------T-----A-A---A----A-TAC-------AGCGGACGAAT-CTTAAGTAGGACATCGCGTACTAACGAATCATCTACAGCAAA-GAAATAGCACGATAGGCCTAATCGAACCAACTA-------TTACA------GC--------GTTTTTGG-GTT------TGCCAT-T--GTATT-T-AATA------TT------TC-TAAT-CCGCAGA-------A-TATAT--TTGTT-------T--ACCTAAT-C-ATTCAATCGTAACATTTC-CTTGCCAATGCCG-----TATTAACTCT--------T--GATTTAAA---AAT-----A----GACGA-G--GA-GTG-ACGG-GTTTTAGTTCTGATCA-G-TTCTGG-----------------CTACTAGCATAATAAAGCTC-TGAA---AA-TAT-TATACTACAAGCA--GTCAGCGGTATTATA-TTA---Gggaaatataacttctattgttccttggtgaaaataaatatatattttgtcatcgcataaaatacagcggacgaatcttaagtaggacatcgcgtactaacgaatcatctacagcaaagaaatagcacgataggcctaatcgaaccaactattacagcgtttttgggtttgccattgtatttaatatttctaatccgcagaatatatttgtttacctaatcattcaatcgtaacatttccttgccaatgccgtattaactcttgatttaaaaatagacgaggagtgacgggttttagttctgatcagttctggctactagcataataaagctctgaaaatattatactacaagcagtcagcggtattatattag
gi|12 : ctactaaccatgtcacttatttatcacgaaacactatgtgttttcaccacttttcaatgaaaatatgaaaacaaggaaatataacttctattgttccttAAATACATA-A--TA-AAA-CTAAAGGTAA-------------A---A-TAT------AT----AAGCATTACATGGT-----A----AAAATATC----AGC--CG-AGTTTAGCGAGTGTAAGAAAAGTAATA-------A-GT----GCACGCCTTTAG--
gi|12 : AGTTCACACTT-TA---AAAAACTAACCATG---CA------AA-TTATATAGCATGACTACA--TATAAGTTTTGA--CCA--CTT------------ATGAAA--ATAAATATAAACTTTGTTATC---GCA----TTTACCC----TTTTAAC-A-A---A----A-TACAGCTGTTAGCGGATGAAT-TATAAAAACGACATTGCGTGCTAACGAATCACCTACAACAAC-TAAATAGTCCGA------TAATCAAACTAAATA-------TTACA------GC--------GGTTTTGA-GTT------TGATACGC--GTATT-T-AATGA-----TT------TT-TACC-CT---AA-------A-TAAA----TG-TC------T--ACTGAAT-G-ACTAAACTCCAAA----C-----CAAA-AC---------------------------------AAG---AAT-------------GA-G---A-G-G-AAAA-GT-------------A-G-TTCTGA-----------------CAACTAGCACAAAAATGCTT-GGAttcacactttaaaaaactaaccatgcaaattatatagcatgactacatataagttttgaccacttatgaaaataaatataaactttgttatcgcatttacccttttaacaaaatacagctgttagcggatgaattataaaaacgacattgcgtgctaacgaatcacctacaacaactaaatagtccgataatcaaactaaatattacagcggttttgagtttgatacgcgtatttaatgatttttaccctaaataaatgtctactgaatgactaaactccaaaccaaaacaagaatgagaggaaaagtagttctgacaactagcacaaaaatgcttgga
gi|13 : aaatacataataaaactaaaggtaaaatatataagcattacatggtaaaaatatcagccgagtttagcgagtgtaagaaaagtaataagtgcacgcctttGAGCATAAGAAAAGTAATA-------A-AT----GCGAGCCTTTAT--C---GTGTAATTTATATTTCATT
gi|13 : ATCGTG---TA------AT-TTATATTTCATTAA-ACAT-TATTAAGTTTCA--TCA--CCGTTTGATTAGAAGGTGAAC--ATAAATTTATATTTTGACATCAATGTT----CT---CC----TTTTTC--A-A---A----A-TACGGCAGTAAGCGGATGAAT-TTTAAGTACGACATCGTGTGTTGGCGAATCATCTGCAGTACA-GAAATAGTTTGA------TAATTGAACCAGATA-------TTACA------GC--------GGTTTTGA-GTT------TGCTATGT--GTTTT-T-AGTG------TT------TC-TAAT-CA---AATACAATTA-TATAG--TT--T-------T--ACCT-AT-C-A--CAAAC-TTAAGTTTC-CTTGCAAATGCAG-----CATTAACTAC--------T--AATCAACA---GAT-----A----GATGA-G--GG-G-----CA-GT-------------A-G-TTCTGG-----------------TAACTAGCATAATACAGCTT-GGAA---AA-TAT-TATGCTAGAGGCA--GTCAGCTGaaacattattaagtttcatcaccgtttgattagaaggtgaacataaatttatattttgacatcaatgttctcctttttcaaaatacggcagtaagcggatgaattttaagtacgacatcgtgtgttggcgaatcatctgcagtacagaaatagtttgataattgaaccagatattacagcggttttgagtttgctatgtgtttttagtgtttctaatcaaatacaattatatagttttacctatcacaaacttaagtttccttgcaaatgcagcattaactactaatcaacagatagatgaggggcagtagttctggtaactagcataatacagcttggaaaatattatgctagaggcagtcagctg
gi|14 : gagcataagaaaagtaataaatgcgagcctttTC----AGC--TGTATTTTGCCGATTGTAAGAAAAGTAAC--------A-AT----GTGAGAATTTGG--C---GA
gi|14 : AA-ACAG-TATCAATACTCA--TCA--CTTTTTATCTAAA----------------TTA-ATTTTGCCATC---GCA----CTTC-CC----TTT-----T-A---ACAGGA-TACTTCGGTTAGCGGAAGAAT-TTTAAGTACGACATCGTGCGCAGGCGAATCACCCACAGCAAA-AAAGTAGTaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|14 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaTATT-T-GATA------TT------TC-TAAC-TT---AA-------A-TATA----TA-T-------TAAACCTAAT-A-ATTCAATCACAAAATGAT-CTTGTGAATACAG-----CATTAATTTC--------A--AATTTAGA---TTT-----A----GA-AA-G--GG-G-G---AT-GT-------------A-G-CTCTGG-----------------TTAGTAGCGTAATACAGCTA-GGAAAATAA-TAT-TAAGCTTATAGCA--GTGAGCTTTATAATGCTTC---ATAA---TAAAA-Gacatttatttgatatttctaacttaaatatatattaaacctaataattcaatcacaaaatgatcttgtgaatacagcattaatttcaaatttagatttagaaagggggatgtagctctggttagtagcgtaatacagctaggaaaataatattaagcttatagcagtgagctttataatgcttcataataaaagattacggtcaacttactagatgta
gi|15 : tcagctgtattttgccgattgtaagaaaagtaacaatgtgagaatttggcgaaaacagtatcaatactcatcactttttatctaaattaattttgccatcgcacttcccttttaacaggatacttcggttagcggaagaattttaagtacgacatcgtgcgcaggcgaatcacccacagcaaaaaagtagtacatt-TAT------AT----AACAATTTCATGGT-TAGTAGCTTAGTATGTCTCATAGC--TGTATCTTTGTGAGTGTAAGAAAAGTAATA-------A-AT----TTGAGCC----------------------ATTTCTTTTCAA-CACGAGCCAAAATACAGCTGACATTC-TA---AGCTACTAACCATG---TACATGTAAT-TCATTTATCATTAA-ACAC-T----------------------TCATTTAAAAGGTGAAC--ACAAATTGATATTTTGACATT---GCA----CTT--CC----TCTTTAACA-A---A----A-TTTGGCAGTTAGTGGATTAAT-TTTTAGTACAACATCTGGTGCTGGCGAATCACCTACAACAAA-GAAATAGTTCGC------TAATCAAACCAAATG-------TTATT------GG--------GGATTGGA-GT----------TA-------ATA-T-AATG------TT------TT-TGAT-GTA--AA-------A-TGTAG--TTT-T-------T--ACCTTAT-G-ATTCAATCTCAAATTTTC-CTTGCAAATACTA-----CAattacggtcaacttactagatgta
gi|16 : ATTATGACGAGGGTAAGAAAAGTTATA-------T-AT----ACGAGCCTTT----------------------------CAT-TACGAGCCAAAACACAGGTGACATTC-TT---AGTTACAAACCGTG---TA------AT-TAATGTATCATGCA-ACAC-TAGTAGCTTTCA--TCA--CTTTTCGTTTAAAAAGTGAAA--AAACAT---CATTTCATCTTT---GCA----CTA--CC----TCTTTAACA-A---A----A-TACGGCAATTAGCGGATGGAT-TTTAAGTACGACATCGCGGGTGGGAGAAATACCTACAACAAA-GAAATAGTTCG----------TTGAGT-------------TTA---------------------TTTGATGTT------T-CTA-------ATC-T-GATA--------------TCATA---TT---AA-------A-TACAT--TTA---------T--ACCTGAA-C-ATT
gi|17 : acctaacagtctccttttgtgtaaatattataatgtgtaataagattgtcatatgaatgtgaattcaggcgggtaGCA---TTTATTACTTTTCTTACACTCGCCAAAATATAGCTGACATGC-TA---AGATACTAACCACG---TA------AT-TTAATTA-----AA-ACAC-TATCA-TTTTCG--CTA--CTTTTTGTTTTAAAGGCGAAC--ATAAAT--ATATTTTAGCATT---GTA----CTTCCCC----TTT-----A-ACAAA----A-TACGGCAGTTAGCGGATGCAC-TTTAAGTACGTCATAGCGTGCTGGCGAATCATCTATAACAAA-TAAATAGTTTGA------TAAT----------A-------CTATG------TC-----------TTTG-----------TGCTATGG--GTATC-T-AATG------TTGCTTTTTT-TTAC-CT---AA-------AATATAG--GTG-T-------TT-ACGTAAT-G-ACTCAACCATAAAGCTTT-TTTGCAAATACCG-----TATTTACCCC--------ATCGATTTAAA---
gi|18 : AATTACATGGT-AAGTGGCTTAAAATGTC----AGC--TGTATTTTGGTGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TGTATTTCATTTCGT-CACGAGCCAACATGTA------ATTT-------------------------------AT-TT----ATCATGAA-ACACATTTTGTTTTTCATTCTT--TTTTTCGTTTAAACGGTGAAA--ATAAACTTATA-TTTACTATT---GCA-----------------T-----A-A---A----A-TACGACAGTTAGCGGATGAAT-CTTAAGCACGACATCGCGTGCTGGCGAATCACCTACAGCAAA-GAAAAAGTATGA------TAATCAAACCAAATA-------TTACT------GT--------AGATTTAG-GTT------TGCCATGT--GTATT-T-AATA------TT------TC-TAAC-AT---GA-------A-ACTAT--TTGTT-------T--ACGTAAT-C-ATgagcttttgttcaaaatacatgtagcaaactta
gi|19 : t--CTTTTTGTTTAAATGGTGTAA---TAAATTTGTATTTTGTCATT---GTA----CT---TCCGC-TTT-----A-ACAAA----A-TACGGCAGTTAATGAATGAAT-TTTAGATACGGCATCACATGCTGACGAATCACAAACAACAAA-GACATAGTTTGA------TAAACAAACAAAATA-------TTACG------GT--------GGTTTTGA-GTT------TGCTACGT--GTGTT-T-ATTG------TT------TT-TAACGTT---AA-------A-TATAT--TT--T-------T--ACCTGAT-C-ATTAAATCACAAAGTTTC-CTTGTAAATATTA-----TGTTAA-TAC--------A--AATC
gi|2 : agtaatatatactgcaagctatcttgcactggatgttttgatgaagatttattt-TAT------AT----AAGAATCACATGGT-TAGTAGCTTAGAATGTC----AGC--TGTAT-------------AGAAAAGTAATACATTGTAA-AT----GCGAACATTTGG--T---GAGCA---TTTATTTCTTTTTGT-CATGAGCTAATATACAGCTGACACTCGTA---AGTTACTAACCGTG---TA------AT-TTGTTTATCTTAAA-TTGC-TATTGGTTTTCA--CCA--TTTTTCATTTAAAAGGTGAAA--ATAAATTTATATATTGTCATC---TCG----CTTCCCC----TTTCAC--A-A---A----A-TA
gi|2 : TCGCGTGCTGGCGAATCACCTACAGCAAA-GAAATAGTATGA------TAATCAAACCAAATA-------TTACG------GC--------GGTTTAGA-GTT------TGTT-TGT--TTATT-T-AATG------TT------TC-TAAC-CA---AA-------ACTATAT--TTT-T-------T--ACCTAAT-TGAATCAATCACAAACTTTC-CTTTCAATTACTG-----CATTAACTCC--------A--AATCTTAA---AAT-----A----GATCA-G--GA-G-A-AAAAGGT-------------A-G-TTCTGG-----------------CTACTAGCATAATACAGCTT-CAAA---AA-TAT-TATGCTATTAGCA--GTCGGGTGTATTAAG-TCA---GTAAAGTTAAAATGTTGCATGATA-AAaaggtgtcgcgtgctggcgaatcacctacagcaaagaaatagtatgataatcaaaccaaatattacggcggtttagagtttgtttgtttatttaatgtttctaaccaaaactatattttttacctaattgaatcaatcacaaactttcctttcaattactgcattaactccaaatcttaaaatagatcaggagaaaaaggtagttctggctactagcataatacagcttcaaaaatattatgctattagcagtcgggtgtattaagtcagtaaagttaaaatgttgcatgataaaactaattaatgtaattat
gi|20 : tatataagaatcacatggttagtagcttagaatgtcagctgtatagaaaagtaatacattgtaaatgcgaacatttggtgagcatttatttctttttgtcatgagctaatatacagctgacactcgtaagttactaaccgtgtaatttgtttatcttaaattgctattggttttcaccatttttcatttaaaaggtgaaaataaatttatatattgtcatctcgcttcccctttcacaaaataaaggtgAATCACCTACAGCAAA-GAAATAGTTCGA------TAATTGAAACATTTA-------T-GCG------GC--------CGTTTTGA-GTT------TGCTATTT--GTATT-TTAATA------TT------TC-TAAT-CT---AAT------A-TATAT--CTA-TACAGTTTT--ACCTTAT-G-ATTCAATCACATAGTTTC-CTTGCAAATACAG-----CATTAAGTCT--------A--AATCTAAA---AAT-----A----GATGA-A--GG-GAG-AAAA-GT-------------A-G-TTCCTG-----------------CTACTAGCAAAATGCAGCCT-GGGA---AA-TAT-TACGCAAACAGTA--GTCTGCTGCATTATG-CTT---GTTATGTAAAAA-GTTGCAactaattaatgtaattat
gi|21 : aAAAAGTAT--GACTTTTGATTCATTGAGCAGCTCTATTTTAT--GTG---TATATC-AGTTA-ATA----------A-------------A---A-TAA------AT----AAGAATTACATGGC-TAGTAGCTTGGTATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCAAGCCTTTGG--T---GAGCA---TTTATTTCTTATTGT-TACAAGC
gi|21 : tatGCTGTTAGCAGATGAAT-TTCGAAAACTATAATGCGTGCTGGTGAATCACCTGCAGCAAA-GAAATAGTATGA------TAATTGAACCAAATA-------TTATG------AT--------GGtgttagcagatgaatttcgaaaactataatgcgtgctggtgaatcacctgcagcaaagaaatagtatgataattgaaccaaatattatgatgg
gi|22 : tataaaagtatgacttttgattcattgagcagctctattttatgtgtatatcagttaataaaataaataagaattacatggctagtagcttggtatgtcagctgtattttggcgagtgtaagaaaagtaataaatgcaagcctttggtgagcatttatttcttattgttacaa---A-TAA------AT----AATAATTATATTAT-TAGTAGCTTAGAATGAC----AGC--TGTATTTTAGCGAGTGTAAGAAAATTATTA-------G-CT----GCTGTCTTTTGG--C---AAGCA---TGTATTTCTTTTTGT-CCCGAGCCAAAATACAGCTGACATTC-T
gi|23 : tagtttattttgcaatttaaaaaagacagactaagttgggttggatatttcaggatttcaagtttA-T--------A-------------A---A-TAT------AT----AAGAATAACGTGGT-TAGTAA--TAG-ATG-C----AA----GTA-TTTGGCGAGgtcgttaaacaagttgttac
gi|23 : AGTAATA-------G-AT----GCAAGTATTTGG--C---GAGCA---TTTATTTCTTTTCGT-CACAAGCCAAATGACAGCTGACATTT-TA---AGCT-CTAACCATA---TA------AT-TTATTCATCATAAA-ACAC-CATT-------A--TCA--TTTTTGGTTTAAAAGGTGAAA--ACA----TGT-TTTTGTCATC---GCACAT-CC---CC----TTT-----A-A---catttatttcttttcgtcacaagccaaatgacagctgacattttaagctctaaccatataatttattcatcataaaacaccattatcatttttggtttaaaaggtgaaaacatgtttttgtcatcgcacatcccctttaataaa
gi|24 : ataaatatataagaataacgtggtt-T-------T--ACCTAATGCGACTCAATTACAAAATTTC-GTTGCAAATGCCG-----CTTTAACTCTTTATAGAAA--GATATATA---AAT-----ATTGAAAGGA-GTTGG-G-G-TGGG-GT-------------ATG-TATTGA------------------TGCTATCTTAATATAGCTT-TGGA---GA-TAT-TATACTAGTAGCA--ATCAGCTGAATTATG-TTC---GTTAAtaaa
gi|25 : AAAAATAT--AATTTATCA---ACTAAACG--------GTCACTATAAAAAATGTA-A--GA-AAA-C--------ATTTAAACTTTGGTATTCA-TAC------AT----AAGAATTACATGGT-TAGTAGCTTAGAATATC----GGC--TGTA-TTTGTCGAGTGTAAGAAGAGCAATA-------A-GT----TCGAGCCCTTGG--C---GAGTA---TTTATTTtt
gi|26 : cTTC-CTTGCCAATGCAG-----CATTAACTCT--------A--GATTTAAA---AAT-----A----GATGA-G--GG-G-G-TAAA-GT-------------T-A-TTCTGA-----------------CTACTAGCATATTACAGCTT-GAAAC--AG-TAT-TATGCTAGTAGCA--GTTAGCTGTAATATG-CTA---GTAAAGTTCAAA-ATTGAATGATA-AATATAatca
gi|27 : -------T--ACATAAT-G-ATTCAA--------TTTT-TTTGCGAATAATG-----TATTGTCTCT--------A--AATCTAAA---AAT-----A----GATTA-G--AATA-A-AAAA-GT-------------A-G-T-----------------------TACTAGCACAATA---------GA---TA-TGC-TATTCTAGTAGGAGTGTCA--TGTATCACG-TTA---GTAAAGTTAAAA----GCATGGTA-AAt
gi|28 : gttcAA--AGGATATATAT--A--TA-G------------A-------------A---A-TA--------T----AAGAATATCATAGT-TAGGAGCTTAAAATGTC----AGC--TGTATTTTGGCGAGTGTAAGAAAAGTAATA-------A-AT----GCGAGCC
gi|3 : gtaaattatcctaaacttattgactctgcagcagtgtaagaagaatattttgAT------AT----AAGAAATACATAGT-TAGTAGCTAAGAACGTC----AACGTTTTTTTTTGGCAAGTGTAAGAAAAGTACTA-------A----------------TGG--T---GAGCA---TTTATTTCTTTTCAT-AATGAGCAAAAATACAGCTACCATTC-TA---AGCTACCGACCAAA---CA------AT-TTATTTGTCATGAA-ACAC-TATTAGTTTTCG--TTT--CTTTTTGTTCTTAAGGTGAAA--ATAAATTTATATTTTATCATT---GTA----CTTCCCC----TTTAAC--A-A---A----A-CACGGCAATCAGCGAATGAAT-TTTAAGTACAACTTTGCATGCTGAGGAATCACCTAT-GTAAATGAAATAGTTTG-------TAATGG----------------TTACT------GT--------GGTTTTGA-GTT------TGCTATGT--GTAAT-T-AATC------TT------CC-TAAC-TTA--AA-------A-TATATA-TTC-T-------T--ACCTAAT-G-GTTCATTCACAATGTTTC-CTTGCAAGTACAG-----CATTAATCCC--------A--AATCTAAA---TAC-----A----GATAAGG--GG-G-G-AAAA-GA-------------A-G-TTCCAG-----------------CTGCTAGAAAAATACAACTT-GGAA---AA-TAT-TATGCTTATAGCA--GTCAGCTGTTTTATG-CTG---GTTAAGTTAAAA-GTTGCATGATA-
gi|30 : C-CTTGAAAATACTG-----CATTAACTCC--------A--AATTCACA---CAT-----A----GCCG---------------A-GT-------------A-G-TTCCAG-----------------CTACTAGCATAACGCAACTT-GGAA---AA-TAT-TATACTAGTAGCA--GTCAGCGTTATAATA-CTA---TTAAAGTTAAAA-GGTGCATGA
gi|31 : -TAT------AT----AAGAATAAGATGGT-GTGTGGTTTAAAATGTC----ATC--GGTATTT-AGCGAGTGTAAGAAAAGTTATA-------T-AT----GCCAGCCATT
gi|32 : C--------A--AATCTAAA---ATT-----A----GATGA-G--GA-G-A-AAAA-A--------------A-G-TTCCGG-----------------CTTCTAGCATAATACAGCAT-GGAT---A--TAT-TATGCTAGTACCA--GTTAGCTGTATTATG-CTA---ATAAAGTTAAAA-G--GAATGAattcttacttcttgctatgtacattggtggctcaaagagttgatttgaaaat
gi|33 : TCATGAA-ACAC-TATTAGTTTCCA--CCA--CTTTTGGTTTTAAAGATGAAA--ATAGATTTATATTTT---ATC---G-------T---CC----TAC-----A-A---A----A-TACAACGGT
gi|34 : GAGATTC-TA---AGCTACTAATCATG---TA------AT-TGATTTATCATAAA-TTGA-TATTGGTGTCTT--CCA--CATT---TTTAAA--GTGA------CAATTTATA
gi|36 : AAATAAATAAATATTACAATATATAACTGACTATACATAAGACAAATAT--c
gi|37 : atggttt-TATGTATGTTAGTAGCA--TTCAACTGCATTTTG-TTAATTGCAAAGTTAACA-GTTGAATTATtgacaaaaca
gi|38 : ATATGGT-TAGTAGCTTAGAATGTC----AGC--TGTAATTTGGCGAGTGTGAGAGAATTAATA-------A-AT----
gi|39 : T----AAGAATCATATGGT-AAGTAACTTTGAATAGC----AGT--TGTATTTTGGCG
gi|4 : attATATATGTA--TATAGA-T--------ATGG----------A---A-TA--------T----AAGACTAACACTATATAGTAGCTTA--------------------TTATGGCGA---TAAAGAAA-TAAGA-------A-AT--------------------------------TACTTCTTTTAGT-CATGAGCCAAAATACAGCTCCCATTC-TA---AGCTACTAACCATG---TA------AT-TTATTTATCATGAA-ACAC-TATTTGGTTTTA--TCAATTTTTTTATTTTAAAGGTGAAAGAATATATATATATTTT-TCAAT---GCA-----------------T-----A-A---A----C-TACTGCAGATAGCGGATGAGT-TTTAAGTACGACATCGCTTGCTGGCAAATAACCTGCAGCAAA-GAAATAGTTCCA------TAACCAAACCAAATA-------TTACA------GC--------AGTTTTGA-GTT------TGCTATGT--GTATT-T-AATG------TT------TG-TAAC-CT---GAAAC----A-TATAT--TT--T-------T--ACCTGAT-C-ATTCAGCCAAAAAATGTC-CTTACAAATACAC-----CATTTACTCT--------A--GATTTAAA---AAC-----A----GGTGA-----A-T-G-AAAATTT-------------A-A-ATCTGA-----------------CTACCAGAATAGTACAGCTT-GGAA---A------------AGTACTA--GTTAGCTTTATTAGG-TCA---GT-------AAA-GCTGCATGATA-TATAgat
gi|40 : acctcaattccatttatAT------AT----AAGAATTACATGCT-TAGTAACTTAGAATTTC----AGC--T
gi|41 : gcaATTACATGGT-TAGTAGCTTAGAATGTC----AGG--TGTta
gi|5 : TATATT-A--TA-AGAAC--------A-------------A---AATAC------ATTTATAAGAATTACATGGT-TAGTAGCTGAGAATGCC----AG-----------------TGTAAGAAAATTAATA-------A-ATACATGCGAACCTTAGG--C---GAGCA---TATATTTCTTTTCGT-CACAAGCTAAAATACAGC--------------------------TG---TA------AT-TTTTTTATCATGAA-ACAT-TATTTGTTTTCA--TCA--GTTTTCGTTTAAAATGTGAAA--ATAAATTTATAGTTTGTCATT---GCA-----------------T-----A-A---T----A-TACGGCAGTAAGCGGATGAATCTTTAAGTACGACGTCATATGCTGGCGAATCACCTACAGCAGA-GAAATAGTTCGA------TAAT--------ATA-------TTACA------AC--------GGTTTTCG-GTT------TGCCTTGT--GTATT-T-AATA------TT------TC-TAAC-CT---GA-------A-TATAT--CTG-T-------T--ATCTAAT-C-CTCCAACCAAAAAATGCC-CTTGTCAATGCAG-----CATGAACCCT--------A--GATCTAAA---AAT-----A----GGTGA-G--GA-G-G-AAAA-GT-------------A-G-TTCCTG-----------------CTACTAGCATAATACAGCTT-GGAA---AA-TAG-TATGTTAGTAGCA--GTCAGCTGTATTATG-TTA---GTAAAGTTAAAA--TTGAATGATA-AATGTtta
gi|6 : ------AT----AAGAATTACACGGT-TAGTAGCTTAGAATATC----AGC--TGTATTTTGGCGAATGTAAGAAAAGTAATA-------G-AT----ACAAGCC---AG--C---AGGC--------TTTCT----------AAGCT---AT-TAGC---CA-TG-TA---ATCTATTTATCACG---AA------ACATTATTTGT------------------TTT-CA--CCA--TTTGTCGTTTAAAAAGTGAAA--CT-AATTTATATTTTGTCATT---GTA-----------------T-----A-A---A----A-TAC-GCAGTTAGCGGATAAAT-CTTATGTACGACGTCGCGTTCCGGCGAATCACCTACAGTAAA-GAAATAGTTCGA------TAATCGAACCAACTA-------TTACA------GC--------GGTTTTGA-GTT------TGCCATGT--GTATT-T-AATA------TT------TC-GTAC-CC---GA-------A-AATAT--GTG-T-------T--ACCTAAT-C-ATCCAACCACAAATTTTTGCTTGCCAATGCAG-----CA-TAAATCT--------A--GATTTAAA---AAT-----A----GATGA-G--AA-G-GAAAAA-GT-------------A-G-TGATGG-----------------CTACTAGCATAATAAAGCTT-GGAA---AA-TAT-TATGCTAGTAGCA--GTCAGCTGTATTGTG-TCA---GTAAAGTTAAAA-ATTGCATGGTA-AATAT
gi|7 : cTAATA-------ACAT----GC---CCATTAGATC---AAACA---TGCATTTT-----GT-GGGAAGCCAAG-TACAAC---CATCC-TATTCAAATTCTTCTTATG---TT------AT-ATATATAT---------AC-GATTTGTATTCA--ACA--CTTTTCGTTTGAAAGGTGAAG--ATAAATTTTTATTTGTTCAAT---GCA----CTT--CC----TCTCAC--A-A---T----A-TACCTCAGTTAGCGGATTGAT-TTTAAATACCACATCGCGTGCTGGTGAATCACCCACAGCAAA-GAAATAGTTCAA------TAG--GAACAAAATA-------GTACG------GC--------GGTTTTAA-GTTATACTTTGCTGTGT--GAATT-T-AATG------TA------TC-TAAC-CT---AAGTT----A-TATAA--TT----------T--ACGGAAT-A-ATTCAA-------GTTTC-CTTGCAAATACTG-----CATAAACTCC--------A--AATCTAAACGTAATTAAAAA----TATGA-G--GA-G-A-AAAA-GA-------------A-G-TCCCGT-----------------TTACAAGAATAATACAGCTT-GGAA---AA-TAT-TATGCTGGTAGAC--GTCAGATGTATATTG-TTA---GTGAAGTTAAAA-GTTACATAATACAATt
gi|8 : agttttagaacatttGGC-TAGTAGCTTGGAGCGTC----TGC--TGTATTTTGACGAGTGTTAAAAAAGTAATA-------A-AT----GGGAGCCTTCAT--CATGAAACA----CTATTTATTATCAC-CACgaaga
gi|8 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggTTCATCATGAA-ACAC-TATTTATTATCA--CCA--CTTTCTGTTTTAAAG---AAG--A-AAATTTATATTATGTCATT---GCA----C------------------A-A---A----A-TACGGCA------------AT-TTCAAGTACGATATCACGTTTGGGCGTTTCACCTACAGCAAA-GAAATAGTGTGA------TAATCGAACTAAATATTTTTGATTTTGTTTTTTGCTTTGATTTAGTTTTGA-TGT------TGCTATGT--GTATT-T-ACTA------TT------TG-TAAC-CCG--AA-------A-TGTATGGTTA-T----------ACCTAAT-C-ATTCAGCCACAAAATGTC-CTTGCAAATAAAG-----CA------------------------------AAT-----T----GGTGA-G--AA-----AAAA-GT-------------A-G-TTCTGG-----------------TTACTAGCATAATACAGCTT-GGAA---AAATAG-TATGCTAATAGCA--GTCAGCTGTGTTATG-TTA---GTAAAGTTTAAA-GTTGCATGtttctgttttaaagaagaaaatttatattatgtcattgcacaaaatacggcaatttcaagtacgatatcacgtttgggcgtttcacctacagcaaagaaatagtgtgataatcgaactaaatatttttgattttgttttttgctttgatttagttttgatgttgctatgtgtatttactatttgtaacccgaaatgtatggttatacctaatcattcagccacaaaatgtccttgcaaataaagcaaattggtgagaaaaaagtagttctggttactagcataatacagcttggaaaaatagtatgctaatagcagtcagctgtgttatgttagtaaagtttaaagttgcatg
gi|9 : tacaaaagttatatagttcagtgtgcatacacgtacatacacacgaggggctagtagcttggagcgtctgctgtattttgacgagtgttaaaaaagtaataaatgggagccTA-A--CA-AGG-A--------AT------------A---A-TGA------AT----AAGAATTACATGGT-TAGTAGCTTAGAATGTC----AGC--TATATTC-GGAGAGTGTA-TAAAAGTAATA-------A-AT----ACAAGCCTTT---------------------------TCAT-CGCAAGTCAAAA-ACAGCCAACACTC-GC---AGCTTCTAACCATG---TA------AT-TTATTTATCATTAA-ACAC-CATTAGATTTCA--CCA--TTTTTCCTTTAAAAGGTGGTA--ATATATTCATATTTTGTCATC----CACCTTCC---CC----TTTAAC--A-A---A----A-TACAGC------TGGACAAAT------------CACC---TGC-AGCAAAGTA---ATAGTACA-AAAAT-----------------CAAACCAAATT-------TTACG------GC--------GGTTTTGA-GTT------TGCTTTGT--GTATT-----TC------TT------TC-TAAT-CTA--AA-------A-TGTAT--TTT-T-------T--ACCTAAT-G-ATTCAATCACAGA----T-CTTG-AAAT---------------------------A--GACC------------------------A-G--GG-G-A-AAAA-GT-------------A-A-TT-----------------------------ATAA-----CTTGGGAA---AA-TAT-CATGCTAGTAACA--GGCAGCAGTATTATG-TTA---TTGAAATCAAAA-GTTGCATAATA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): AATGGACATGTGTGTGGGTTAAATCGCTCGCTACGTCCATATCCATAGAAATGATATAAAAATAACGAATTCTTAAAATAAATGGAACTTCAATTTATGATAAGAACTTCATAAACATCAACTCTAAACACTTTCTAGCTAACATCCTT
Unaligned ( gi|35 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC