lowQualScore : 1111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999 888888 33 1 222222 11 3333 1 3333333333333333333333333333333333333333333333 11111111 7777777777777777777777777777 444444444444444444444444444444444444444 4444444444444444444444 222222222222222222 44444444444 2222222 111 1111111 222222222 1111111111 111111 111111 111 1111111 44444444444444444444444444 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 11 999999999999999999999999999999999999999999 2 5555555555555555 1 111111 1111 111 22 11 77777777777777777777777777777777777 111 3333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 333333 11111 2222 111 22222222222 2222 99999999999999999999999999999999999999999999999999999999 111111111111111111111111111111 1 1 111 3333333333333333333333333333333333333333333333 555555555555 1111111111 22222 11 33333333333 222 11 7777777777777777777 333333 1 11 3333333 4444444444444 11111 1 55 2
lowQualScore : 99999999999999999999999999 000000 00 3 888888 3 1 44 8888 7 7 2 9 2222222222222222222222222222222222222222222222 9 99999999 5 7777777777777777777777777777 7 5 555555555555555555555555555555555555555 5 66 3 66 0000000000000000000000 444444444444444444 666 99999999999 5555555 66 5 444 6666666 5 888888888 1 7777777777 66 99999 0 555555 1 333333 4 000 6666666 66666666666666666666666666 999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 2222 77 00 77 333333333333333333333333333333333333333333 8 7777777777777777 0 1 6 999999 66 1 6666 44 22 333 77 7 0 11 2 11 7 22222222222222222222222222222222222 555 6 3333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 666 222222 88 22222 6666 333 88888888888 2 2 88888 1 33 0000 22 88888888888888888888888888888888888888888888888888888888 5 888888888888888888888888888888 0 0 666 6 8888888888888888888888888888888888888888888888 2 5 8888888 444444444444 4444444444 6666 8 444 55555 5 5 44 1 11111111111 555 00 3 4444444444444444444 3 666666 3 0 33 3 2222222 4 6666666666666 3 3 77777 7 55 0 3
lowQualScore : .......................... ...... .. . ...... . . .. .... . . . . .............................................. . ........ . ............................ . . ....................................... . .. . .. ...................... .................. ... ........... ....... .. . ... ....... . ......... . .......... .. ..... . ...... . ...... . ... ....... .......................... ... ......................................................................................................................................................................................................................................... . .... .. .. .. .......................................... . ................ . . . ...... .. . .... .. .. ... .. . . .. . .. . ................................... ... . ....... ......................................................................................................... ... ...... .. ..... .... ... ........... . . ..... . .. .... .. ........................................................ . .............................. . . ... . .............................................. . . ....... ............ .......... .... . ... ..... . . .. . ........... ... .. . ................... . ...... . . .. . ....... . ............. . . ..... . .. . .
lowQualScore : 00000000000000000000000000 555555 55 3 888888 2 0 33 8888 7 0 5 2 2222222222222222222222222222222222222222222222 3 99999999 7 7777777777777777777777777777 4 0 444444444444444444444444444444444444444 0 99 1 44 7777777777777777777777 333333333333333333 777 88888888888 2222222 99 0 000 2222222 0 222222222 1 4444444444 99 22222 4 777777 4 000000 4 111 3333333 77777777777777777777777777 222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 3333 00 88 77 888888888888888888888888888888888888888888 5 8888888888888888 0 2 0 888888 55 7 2222 55 11 000 22 4 1 66 2 99 9 00000000000000000000000000000000000 777 0 8888888 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 333333 88 00000 8888 888 00000000000 5 5 44444 4 11 4444 88 00000000000000000000000000000000000000000000000000000000 0 777777777777777777777777777777 0 2 555 2 8888888888888888888888888888888888888888888888 7 7 7777777 444444444444 8888888888 1111 1 222 55555 9 4 55 4 55555555555 000 22 0 0000000000000000000 7 333333 7 0 22 5 0000000 7 5555555555555 0 0 00000 0 00 0 0
consensus : NNGGGTCCAAGGGAGGNNTGGCGGGGCCCCACCCCAATGTTCAGGTTGAGGGTGGGGTANGGG-AGCATATA------CTTTGCCCCC-CCCC-C-ANTATTTTNATAAAAATGTC----------------GAAAGNCCACAAAATACCAA--AC-----ATCTGGAGTAAATGACA---A--C-ATA-TT--TTANCCCTAAAA--ACTCA---C-TAGAATGCAGCA-TT-TGT-TG--TTTT---A---A---NA-ATCA---AN--ATTT-TCCG--GGGTAANNCCC----CGTA-------CCG----CCACCAG--CCCTACTCAA---ACTCTNCATT-------ACGTTTTGGCTC-G-CA-T-GCATGT--GGT-------TT-AAAACCCATTGGAAGCTC--A--T-TTT--TTA--A-TACATCTTAT--TTTTTTCTTAA-----TAA-AA-CGTTTAAA---NGTCACAAA-C--TAT-T-------GG-------AGTAAATAACAAC---CAT--TTTTNC------CCTTATAA--TN-A-----C-------T----AAAN--TGCAGCA---T-TTG-GT-TTTAAG----------ATATCAAAATNT-TCCGG--------------AGG---AG------A----CC-CCC---GTAC-----C-CAG-------------------AACTGGAGT-------AA-------CC----ATA-----TA--T-TA-TTTATTC-TAAAA---ACTCACTAGAATG-CAGCATTTGGTGTTTTN-AATATCATTTTTTTTC-GCG-------G--GGGGCAGGG---GTG-G--TGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATGT--CGGGGG------GCC-TACTCCAACCAGCAGAGAACACCA-----CACNCTCTCAGTGN--CCACAGTGCATGACGTACCGGGTTTAAAACCCANTGGAAGTTCANTTTATTTGATACATNTTATA------G-TT---NAA-AAAAACGT------TTAAAAGTCACAAAA---TATT-----CGGGAGT--AAAT---AAC-AATTTTC--TTNCTTT--TA--AAATTGCAAAAA-ATACAGCATNA-GGTT-T--------N-----C----AA-AT--AG--------T--CCAN--GTACCCC-AACNAGCAGGGGACAACCNCTCCAAGAT--CAAAC----TG--GAGTAAATGACAACC--ATA---TNTT-T-TATCCT---AAAAACTCACTAA-A-ATGCAGCATTTGGTGTTT----T----ATC-TAN----ATTT-----T-TTCCGGGGTAGGNCCCAAT---ACCCC-ACCAGCA----GGGG-ACA--CCTC-CTC-----CCACA-CTGGAGTAAATGACAAC-CA-----T----------T-TCT-CCCAT----AAAA-CTCGCTAG--AAT-GCAGCA-------TTTG-T-TGT-----TTAAGATATNAAAA-----TTTT----CCGGG-AGAGGCC-CCCGTACCCCCACCAGCAAGGG---AT---TCCCA--CTGA-GGGNAACGAG-GCCAT-CCTGNTGT-TTCTANAAT-A---ACNAGAAT-GCA-CGNTTTGGCACTAAGAAA--A--A-AAANTAATTACGGGNGNCCCCCNAAANCACCCCCAGAATTATATT--TTTCAANTT
Reference ( gi|1 ) : GCGGGTCCA---GAGGTTTGCCGG---TC-ACCT-AATGTTCAGGTTG----CCGGGT-CGGG-AGCATATA------CTTTGCCCTC-TCC----AATATATTGATAAAAATGTC----------------AAAAGTT------------A--AC-----ATCTGGAGTAACTGACA---A--T-ATA-TTAGTTAATCTGAAAA--AGGCA---A-TGGAATACAGCA-TT-AAT-TG--TTTT---A---A---TA-ATCA---AT--ATTT-TCCG--GGATAAGACCC----TGTA-------ACG----CCACCAA--CCCTACTCAA---ACTCTGCATC-------ACTTTTTGGCTC-T-CA-T-ACATGT--GGT-------TT-AAGTCCCATTGGAAGCTC--A--T-TCT--TTA--A-TACATCTTAT--TTCTTTCTTAA-----TAA-AA-CGTTTACA---TGTCACAAGTC--TAT-T-------GG-------AGTAAATAACAAC---CAT--TTCCCC------CCTTATTA--TT-A-----C-------C----AAAT--TGCAGTA---T-TTG-AT-TTTAAG----------ATATCAAGATAT-TCCAG--------------AGG---AG------A----CC-CTC---GTAC-----C-CAG-------------------AACTGGAGT-------AA-------TC----ATA-----TA--TGTAATCTAATC-TAAAA---ACTCACTAGGATA-CAGCATTTGGTGTTTTT-AATATCATTTTTTTTC-GTGTTTG--TGTTGGGACAGGG---GTG-A--TGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGT--CAAGGG------GCC-TACTCCAACCAGCAGAGAACACCA-----CACATTCTCAGTGT--CCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTA------G-TT---AAA-AAAAATGT------GTAAAAGTCACAAAA---TGTT-----CGGGAGT--GTAT---GAT-ATTTTTC--TTTTTTT--TA--AATTTGCAAAAAAATATCGCATTA-GGTT-T--------A-----C----AA-AT--AG--------T--CCAG--GTACCCC-ATCAAGCAGGGGACAACTCCTCCAAGAT--CAAAC----TG--CAGTAAATGACAACC--TTA---TCTT-T-TATCCT---GAAAACTCACTAA-A-TTTCAGCATTTGGTGTTT----T----ATC-TAT----ATTT-----TGTTCCGGGGTAGGTCCCAAT--TTCTCC-ACCATCA----GAGG-ACA--CCTC-CTC-----CCACA-CTGGTGTTATTAACAAC-CA-----T----------T-TCT-CCCAT----AAAA-CTTATTAC--AAT-GCAGTA-------TTTGCT-TATA-A--TTAAGATATGAACA-----TTTT----CAGGG-AGAGGTC-CCCGTAATCCTTCCAGCAAAGA---AT---TCCC---CTGA-GGGAAACGGGTGCCATTCCTACTGTGTTCTACAATGA---ACCAGAAT-GCA-CAATTTGGCACTAAGAAA--A--A-AAATTAA--A-GGGAAG-CACCAAAAACACTCTCAGAATTAAATTAATTTC-ATTTGA
gi|22 : GGGTCCAAGGGAGGATTG---G---TCCACC--AATGTTCAGGTTG------AGGTATGGGTAGCATATA------C----CCCTC-CCC----
gi|24 : ataccaacttaagcgtagccgagAGGTGTGGCGGGGCCC-ACCCCAATGTTCAGGTTGAGGGTGGGGT-GGGG-AGCATATA------TTTTGCCCtcccctcccgacccacccaacatatgaataaaatatca
gi|7 : acatccgatagcataggcataggaatcgggggtgggggacGGG-AGCATATAGGCCTACTTTGCCCCCATCCCAC-AATATTTTCATAAAAATGTCTGGAGGTCACAAAATAGAAAATC------------A--ACTAAACATCTGGAATAAATGACA---ACAT-ATA-TT-TTTCAT---AAAA--ACTCC---G-TAGAATGCAGCA-TT-TGT-TG--TTTG---A---A---AT-ATCA---AA--ACTT-TCCA--GTATAAGACCC----CGTA-------CTG----CCACCAG--CCTTCTTCAC---ACTCca
gi|13 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggagggggggggggggggggggGCAAATA------CTTTGCCCCC-CCCCCCCATTTTTTTTATAAAAATGTA----------------AAAAGGTCACAAAATACCAA--AC-----ATCTGGAGTAAATGACA---A--C-ATA-TT-TTTACCCTAAAA-----TCA---C-TAGAATGCAGCA-TT-TTT-TG--TTTT---A---AATATA-A--A---AA--AGT---CCA--GGTTAACACCC----CGTA-------TCGGATCCCACC-----CCT--TCAC---ACTCTTCCTT-------ACATTTTGGCTTGT-CA-T-TCATGT--GGT-------TT-AAAACCCATTTTAAGCTC--A--T---T--TTA--A-TACattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|2 : C----ACTATTTTGATAAAA-TGTC----------------TAACGGTCACAAAATACCAA--AC-----ATCTGGAGTAAATGACG---G--C-ATAATT--TTCACCCTAAAA--CCTCA---C-TAGAATGCCGCA-TT-TGT-TG--TTTC---A---A---AT-ATCAGAAAT--GTGTAT-----GGTTAAGGATC----CGTA-------CCG----CCACCAATCCCCAACCCCATCCACTTTACATTCTTCCTGACGTTTTGGCTT-GGCA-T-GCATAT--GGT-------TT-AAAGCTCATTTGAAGCTC--A--T-TTT--TT----------TTTAT--TT---TCTTAA-----TAA-AA-CGTTTAAA---TGTCACAAAAC--TAT-T-------GG-------AGTAAATAACGAT---CAT--TT-CCC------CATTATTG--TT-A-----C-------C----AAAT--TGCAG-----------------AAT----------ACATCAAGGTTT-TCCAG--------------GGG---AG------A----CCACTC---GTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAA-------CC----ATA-----TC--TGT----TATTC-TAAAA---ACTCACTAGAATG-CAGCATTTTGTG-TTTT-AATATCATTTTTTTCC--------------GGGGCAGAG---G-G-AAGTGT-TCC--TCACTAGCTC
gi|11 : cgcaacccatccacccaTGAAAAAACTTTT----------------AAAAGTC------------ACAAA-----ATATGGAATAACCAACA---A--TCATA-CT--TTTATCCTTAAA--ACTCG---C-TAGACAGCAGCA-T----T-TGGAGTTT---A---A---GATATCA---AC--ACTT-TCCG--GAATAAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|9 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttc------------A--AC-----ATCTGGAGTAATTGACA---A--CAATG-TT--TTATCCTGAGAACTAACCA---A----GATGCAGCA-T----T-TGA-TTTT---A---A---GATATAA---AA--ATGT-TCCGGTGGACCATACCC----C-----------CG----CCAGCGA--Ccccccacccctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|5 : atcaCTGCAATAAATGACACTCA--T-ATC-TT--TTA-TCCTATAA--ACTCA---C-TAAAATTCGGTAATT-GAT--G--TTTT---CTCTA---TA-ATT---------TTT-TCCG--GGGTAATCCCC----CGTA-------ACA----TCACTAG--Caacatcatctctcacattctctccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|4 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttagaatataaaaaatccagaggccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaa---A--T-ACA-TCTGTTATTCT--AAA--AGACACTCACTAGAATGCAGAA-TTTGATGTT--TTTT---A---A---TA--TCG---TTTTATTT-TACA--GGGCAGGGTTTGGGGTGCATG-----CCG----CCACTAG--CTCAATCCAAC--ACTCTTCATC-------ATGTTTTAACTC-G-CAGT-GCATGT--GGT-------TTTGGGT----TTAAAATCCG--G--T-TCT--T-A--A-TACATCTGAT--aagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|3 : cAATGCAGCA-TT---T-GG--TTTTTAAA---A---TA-TTAA---AC--TTTT-TCCG--GAGTAGTCCCC----TGTACTAGGGAAC-----CCAC--A--TTTTGCTCCA---ATT--GCATG-------A------GG---------T-AC-CG---AGT-------TT-AAAACTCA---GAAGTTT--G--GGTTT--TTA--A-AACATCTTATA-TTTTTTCTTAA---------AA-CATTTAAA---TGTCACAAA-A--TAT-T-------GGTCCCAGGAGTAAATAACAAC---CAT--GT-----------TTTATCA--TA-AAATCTC-------C----CTATGGTGCAGCA---T-TTG-ATATTTAAG----------ATATCAAAATagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|11 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactTTTGGCTC-C-TAGT-GCATGT--GGTAACAGGTTT-AAAAC-------AAGGTG--AACT-TTT--TTA--AATAAATCTT----TTGTTTCTGAA------AA-AA-CTTTTAAA---AGTCACAAA-----ATAT-------GG-------AATAACCAACAAT---CATACTTTTAT------CCTTAAAA--CTCG-----C-------T----AGAC--AGCAGCA---T-TTGGAG-TTTAAG----------ATATCAACACTT-TCCGG--------------AAT---A-------A----CC-CCC-----AC-----C-Cgaattaaaaaacatc
gi|4 : ttattattgttattattatcatccaaccaccacgtacgc-CA-TGACATGCTGGGT-------TT-GAAACTCAAGGGTAGTTC--A--A-TTT--ATACGA-TACATTTTATAGTT------TAA-----TAA-AAACGTATAAA---AGTTACAAA-A--TAT-TCG-----GG-------AGTAAATAATAAT---TTT--TTTTCT------C----------T-A------------------AAAA--TACAGCA---T-AAG-GT-TATAAAGATCAGAAAAATGTCCAGGTAT-CCCAACT------------AGC---AGTGGACAA----CCACTC----CACGA---C-CA--------------------AACTGCAGT-------AAATTCCAACC----ATA-----TA--T----TTTA-TC-TTGAA---ACTCACTAAAATT-CAACATTCGGTGTTTTT-TCTTTCATTTTTTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtg-CA-T-AC-CG---GGT-------TT-AAAATCCAGTGGAGGTTC--A--C-TGTATTTG--A-TACATGTTA-----CAGT-TTAA-----TAA-AAACTTGTAAA---AGCCACACA-C--TAT-TCG-----GG-------AGTAAATAACAAT---CTT--TT--TG------CTTTAAAAC-TT-G-----C-------A----AAAA--TACAGCA---TAACG-TT-TTTAAG----------ATCACAAAAGTT-TCCAGGAACCCCCACCAGCAGG---GG------ACAATCC-CTCCAAG-AC-----C---A-------------------AACTGCAAT-------AAATGACACTC----ATA-----TC--TTTTATC----C-TATAA---ACTCACTAAAATT-CGGTAATTGATGTTTTC-TCTATAATTTTTTaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttagaatataaaaaatccagaggccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtagga--GGT-------TT-AAAACCCATGGGAAGTTTTGA--T-TAT--TTA--A--ACATTCTAT--TTTTTTCTT-------T--------CTTAAA---AGTCACAAA-A--TAT-TGGTCCCAGG-------AGTAA--AACAAC---CAT--GTTATCATAAAATCTTCTTA--T---------------------AA----TGCAGCA---T-TTG-GTATATAAA----------ATATCAAAATGT-TCccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|15 : atgaagtactgTAT--ATTTTTCTTAA-----TAA-AA-C-----CA---T-TTAAAAGTCAATAT-T-------GGTCCCAGGAGTAAATAACAAA---CATAATT-------------TATCA--TG-A-----CATCTTCCT----ATAA--TGCAGTA---T-TTT-GTATTTAAG----------ATATAAAAATGT-TC--A--------------AGG---AT------A----TC-CCC----CAC-----C-AAC-------------------AAATGGAGG-------AG-------AC----ACA-----TA--C-TAATaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|13 : aacttaAT--TTTTTTTATAAAAATGTAA-AA-AGGTCACAAAATACCAAACATC--T-----------GG-------AGTAAATGACAACA--TAT--TTTTAC------CC-TAAAA--TC-A-----C-------T----AGAA--TGCAGCATTTT-TTG--T-TTTAA-----------ATATAAAAA-AG-TCCAG--------------gtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|9 : gcaaatactttgccccccccccccTTAA-----TAATAA-CGTTTAAA------CAAAA-----TAT-T-------GA-------TGTAAATTACGAC---TAT--TTTTTT------CCT----------A------------------AAAT--T-CAATA---T---G-AT-AT-AAG----------ATATCAAAA-AT-TCCAG--------------GGG---AG------A----CCTCCC---ATAC-----CTCAG-------------------Agttaacaccccgtatcggatcccaccccttcacactcttccttacattttggcttgtcattcatgtggtttaaaacccattttaagctcattttaatac
gi|20 : atcaaacatctggagtaattgacaacaatgttttatcctgagaactaaccaagatgcagcatttgattttaagatataaaaatgttccggtggaccatacccccgccagcgacaacatcatctctcacattctctccatctaaatgggaaacccggaggagatT-T-------GT-------AGTAAATAAAAGT---CATA-TTTATC------C--TATAAATTC-A-----A-------T----AGAC--CGTAGCA---T-TTT-GTGTTTAAG----------ATATCAACATTT-TCTA-----------------G---AG------A----TG-CTC---GTAgaggacaccctatccca
gi|7 : tttcaaagatacaacatt-T-------GG-------AATAAATGACAACATATAT--TTTTC-----------ATAA--AA-A-----C-------TCCGTAGAA--TGCAGCA---T-TTG-TTGTTTGAA----------ATATCAAAACTT-TCCAGT-------------ATA---AG------A----CC-C-C---GTA--------------------------------CTG--------------------CC----AC------------CAGCCT--TC-TTCAC---ACTCATTAGAATG-CAGCATTTGGTGTTTTC-AATAT-ATTTTTTTACAGCA-------GCAGGGGGAGGG---GTGCG--TG---CCA-CCACTAGactgtatccccgtacctccgtatccccgctcttc
gi|9 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaatattttcataaaaatgtctggaggtcacaaaatagaaaatcaactaaacatc-T-------GG-------AGTAATTGACAAC---AATG-TTTTAT------CCTGAGAA--CT-AA----C-------C----AAGA--TGCAGCA---T-TTG-AT-TTTAAG----------ATATAAAAATGT-TCCGG--------------TGGACCAT------A----CC-CCC---G--------C-CAG-------------------
gi|14 : atcaaacatcA---T-TTG-GTATTTAA-----------ATA-CAAAACAAATCCGG--------------AGG---AG------G----CC-CTC---GTAT-----C-cgacaacatcatctctcacattctctccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|13 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgcctcccccagtattttaataaaaatgtttcaaactcataaaaatatcaaacgtctgatttacatcaatatttttatcctaaaactcgcttaaataaataCTGGAGT-------AAATGA---CA----ACA-----TA--T-T--TTTACCC-TAAAA-----TCACTAGAATG-CAGCATTTTTTGTTTTA-AATATgccaccaaccccatcc
gi|9 : gcaaatactttgccccccccccccattttttttataaaaatgtaaaaaggtcacaaaataccaaacatCTGGAGT-------AA-------TTGACAACA------A--TGT--TTTATCC-TGAGA---ACTAACCAAGATG-CAGCATTTGA---TTTT-AAGATaaaaaagtccaggttaacaccccgtatcggatcccaccccttcacactcttccttacattttggcttgtcattcatgtggtttaaaacccattttaagctcattttaatac
gi|11 : atcaaacatTGGAAT-------AA-------CC----A-A-----CAATCATACTTTTATCCTTAAA---ACTCGCTAG-ACAGCAGCATTTGGAGTTTAA-GATATCAataaaaatgttccggtggaccatacccccgccagcgacaacatcatctctcacattctctccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|3 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataGGAGT-------AA-------------ATAACAACCA--TGT--TTTA-TCATAAAA---TCTCCCTATGGTG-CAGCATTTGATATTTAA-GATATCAacactttccggaataacccccacccctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|19 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtccca-------TC----ATA-----TT--TTTA-TC----C-TAAAA---TCTCACTCACATA-TAGCATTTGGTGTaaatgaattaaaaaacatc
gi|4 : cccatcaattattcaagttggtagtagcatattctttgtcttcccgcctccatcctgtaaaaagttttaatgtcacaaaaataacaaacatcttatttacatC----ATA-----CA--TCTG--TTATTC-TAAAAGACACTCACTAGAATG-CAGAATTTGATGTTTTTTAATATCGTTTTATTTT-ACA-----------GGGCAGGGTTTGGG-G--TGCATGCCGCCACTAGCTCAATCCAataaatacgaaa
gi|17 : TATTC-TAAAA---GGTCACTAAAATGTCAA-ATTTGGTGTTTTA-AATacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|8 : aacaactaatctaataaacctttgaagttaatggaaactattttct-TAAAACTCACTCACTTAAATA-CAGCATTT-GTTTTTTA-AATATtatattaaaatgtcccttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|23 : GCATTTTGTGTTTTT-AATAGC-TTTTTTTTC-AGGGTTGGATG-TGG---AGGG---ATG---------CC-GCCACTAGCTCAATCCAatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtagtaaataacaaccataaattgtttgtatcccccaaaaaactcacaataatgcagcttttgttgtttaagatataaaaaaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|4 : gccAGAATATA-AAAAT----CGAGAAAA----GTT-TACTCCATCCAGCAGAGAACACCA-----CACTGTCTCAGTAC--TCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATA------GTTT---AAT-AAAAACGT------ATAAAAGTTACAAAA---TATT-----CGGGAGT--AAAT---AAT-AATTTTT--TTTCTCT---------------AAAAATACAGCATAA-GGTTAT--------AAAGATCAGAAAA-AT---G--------T--CCAG--GTATCCC-AACTAGCAGTGGACAACCACTCCACGAC--CAAAC----TG--CAGTAAATTCCAACC--ATA---TATT-T-TATCTT---G-AAACTCACTAA-A-ATTCAACATTCGGTGTTT----T----TTC-TTTC---ATTT-----T-TTCT-AGGTAAGACTCA---------C-ACCAGCA----GGGGAACATCCCTCGATC-----CCACA-CTGATGTAATTTACAAC-CA-----C----------T-TCC-CTC-T----AAAA-CTTACTAG--AAT-GAAGAA-------TTTACT-T----A--TTAAGATATGAAAA-----ATGT----TTGGG-AGAGGTA-CCC-TACCCCAACCAGCCGGGG---AT---TCCC---CTGA-GGGCAACGAGTGTCATTCTTGCTacacactctttcacgttttaacttgcagtgcatggg
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtAGAATATAAAAAAT-C--CAGAGGCCAGCCGCC-TACTCCAACCAACAGTGAACACCA-----CACTCTCTCAGTGG--TTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACA------G-TT---TAATAAAAACTT------GTAAAAGCCACACAC---TATT-----CGGGAGT--AAAT---AAC-AATCTTT--TTGCTTT--AA--AACTTGCAAAAA--TACAGCATAA-CGTT-TTTAAGATCA-----C----AA-A---AG--------TTTCCAG--GAACCCC-CACCAGCAGGGGACAATCCCTCCAAGAC--CAAAC----TG--CAATAAATGACACTC--ATA---TCTT-T-TATCCT---ATAAACTCACTAA-A-ATTCGGTAATTGATGTTT----T----CTC-TAT----AATT-----TTTTCCGGGGTAATCCCCCGT--AACATC-ACTAGCA----AGGG-ACAC-CCCC-CTT-----CCACA---GGTGTAACTAAC-----------------------------------------------TAG--AAT-GAAGTA-------CTTGCT-T----A--TTAAGAT
gi|2 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAGAATATAAAAAAAAT--CTAGGG------GTC-TATTCCAACCGGCTGAGAACACCC-----CACTCACTCAGTGT--TCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATA------GTTT---TAT-AAAAACGT-------TAAAAGTAACATAATATTATT-----CAGGAGTTAATAT---AAC-A---ATC--TTTTTTCAGTG--AAAATGCAAAAATACAT--CATTA-GGTT-T--------T-----T----AAGAT--CGCAAACGTTT--CCAT--GTACCCC-ttccgattattctg
gi|9 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttATATA-AAAATGTTCCGGTGG------ACCATACCCCCGCCAGC-GACAACATCATCTCTCACATTCTCcacc
gi|3 : atcaaacatctggagtaattgacaacaatgttttatcctgagaactaaccaagatgcagcatttgattttaagAGGGAAC--C------CACATTTT--GC-T--CCA-ATTGCATGAGGTACCGAGTTTAAAACTCA---GAAGTTTGGGTT-TTTAAAACATCTTATATTTTTTC-TT---AAA-ACA----T------TTAAATGTCACAAAA---TATTGGTCCCAGGAGT--AAAT---AAC-Atccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|11 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactCACCA-----CGTACGCTTTGGCT--CC-TAGTGCATGTGGTAACAGGTTTAAAACAAGGTG-AACTTT--TTTA---AATAAATCTTTT-------G-TTTCTGAA-AAAACTTT-------TAAAAGTCACAAAA---TATaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|28 : ttattattgttattattatcatccaacCTTAGTGAGACCTCAGGGCAAAACATACTTGATTG-GAACCCATTGGAATTTT-TTTTGTTTGAggaataaccaacaatcatacttttatccttaaaactcgctagacagcagcatttggagtttaagatatcaacactttccggaataacccccacccctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|17 : GTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTA
gi|2 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgGCATG-CATA--TGGTTTAAAGCTCATTTGAAGCTCATTTTTTTTTAT---TTTCTTA------A-T---------AAAACGT------TTAAATGTCACAAAAC--TATT-------GGAGT--AAATAACGATCATTTCCCCATTATTGT--TACCAAATTGCAGAA---TA---CATCAAGGTT-T--------T-----C----CA-GGGGAG--------A--CCACTCGTACTCTTACCG-GCAAGGGTCCATCTCTCC-------CAAAC----TG--AAGTAAATGAAAACC--ATA---TCTG-T-TATTCT---AAAAACTCACTAG-A-ATGCAGCATTTTGTGTTT----T----A-A-TATC---ATTT-----TTTTCCGGGGCAGcat
gi|6 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttgATGAAGTACTGGGTTTAAAACCCATGGGAAGTTTTGATTATTTAA-ACA--TTCTA------T-TT------------TTTTCTTTCTTAAAAGTCACAAAA---TATTGGTCCCAGGAGT--agggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|17 : ACAACTAATCTAA-----TAAACCTT-TG--AAGTTAATGGAAAC----TA---TTTTCT-TATTCT---AAAAGGTCACTAA-AATGTCAA-ATTTGGTGTTT----TAA--AT--TAT----ATTaaaacaaccatgttatcataaaatcttcttataatgcagcatttggtatataaaatatcaaaatgttcaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|20 : aTCAAAGAT--ACAACATTTTG--TAGTAAATAAAAGTC--ATA---T----T-TATCCT---ATAAATTCAATAG-A-CCGTAGCATTTTGTGTTTAAGAT----ATC-AAC----ATTT-----Taaaatgtcccttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|13 : ttCAAAATACCAAACATC-TG--GAGTAAATGACAACA--T-A---T-TT-T-TACCCT---AAAA--TCACTAG-A-ATGCAGCATTTTTTGTTT----T----AAA-TAT----Actagagatgctcgtaactgtatccccgtacctccgtatccccgctcttc
gi|9 : gcaaatactttgccccccccccccattttttttataaaaatgtaaaaaggtcaAT--CAAACATC-TG--GAGTAATTGACAACA----A---TGTT-T-TATCCT---GAGAACTAACCAA-G-ATGCAGCATTTG--ATTT----T----A----AG----ATATAAAAATGTTCC--GGT-GGACC--AT--ACCCCC-GCCAGC-----GACA-ACA--TCAT-CTC-----TCACA-TTaaaaagtccaggttaacaccccgtatcggatcccaccccttcacactcttccttacattttggcttgtcattcatgtggtttaaaacccattttaagctcattttaatac
gi|8 : --CAAAA----TGAGTAGTAAATAACAACC--ATAAATTGTT-TGTATCCCCCAAAAAACTCACAAT-A-ATGCAGCTTTTGTTGTTT----ctctccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|2 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacaAT----TG--GAGTAAATAACGATCATTTC---CCCA-T-TAT--T---G-----TTACCAA-A-TTGCAGAATAC----------------ATC-AAG----GTTT-----T---CCAGGGGAGA--CCACTCGTACTCTTACCGGCA----AGGGTCCA--TCTC--TC-----CCAAA-CTGAAGTAAATGAAAAC-CA-----T----------A-TCT-GTTATTCTAAAAA-CTCACTAG--AAT-GCAGCA-------TT---T-TGTG-T--TTTA-ATAT---CA-----TTTTTTTCCGGGGCAGAGGaagatataaaaaaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|7 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactC----TG--GAATAAATGACAACA--T-A---TATT-T-T-TCAT---AAAAACTCCGTAG-A-ATGCAGCATTTGTTGTTTGAAAT----ATC-AAA----ACT--------TTCCAGTATAAGACCCCGT-----ACT-GCCACCA----G---------CCTT-CT------TCACA-CTgaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|11 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaatattttcataaaaatgtctggaggtcacaaaatagaaaatcaactaaacat----TG--GAATAACCAACAATC--ATA----CTT-T-TATCCT---TAAAACTCGCTAG-A-CAGCAGCATTTGGAGTTTAAGAT----ATC-AAC----ACT--------TTCCGGAATAACCCCCAcattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|5 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataAGTAAATAACAA----------TCTT-T-TTGCTT---TAAAACTTGCAAA-A-ATACAGCA--TAACGTTT----TTAAGATCACAA----AAGT-------TTCCAGG---------AA----CCCCC-ACCAGCA----GGGG-ACA--ATCC-CTCCAAGACCAAA-CTGCAATAAATGACACT-CATATCTT----------T-TAT-CCTAT-----AAA-CTCACTAA--AAT-TCGGTAATTGATGTTTTCTCTATA-A--TT-----------------TTTT----CCGGG-GTAATCC-CCCGTAACATCACTAGCAAGGG---AC---ACCC---Ccccctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|3 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttagaatataaaaaatccagaggccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggAGTAAATAACAACC----A---TGTT-T-TATCAT---AAAATCTCCCTAT-G-GTGCAGCATTTGATATTT----ccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|15 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggAGTAAATAACAAAC----A---TAAT-T-TATCAT---GACATCTTCCTAT-A-ATGCAGTATTTTGTATTT----A----AGA-TATAAAAA--------TGTTCAAGGATA--TCCC---------CC-ACCAACAAATGGAGG-AGA--Caagatatcaaaatgaattaaaaaacatc
gi|19 : aacttatatatttttcttaataaaaccatttaaaagtcaatattggtcccaggTA---T-TT-T-TATCCT---AAAATCTCACTCACA-TAT-AGCATTTGGTGTacatactaatgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|3 : cccatcaattattcaagttggtagtagcatattctttgtcttcccgcctccatcctgtaaaaagttttaatgtcacaaaaataacaaacatcttatttacattca---TCTT-T-T-TCTT---TAAAACT-----A-A-TG-CAGCATTTGGTTTTTAAAAT----AT--TAA----ACTT-----T-TTCCGGAGTA-GTCCCataaatacgaaa
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-TAA----ATTT-----T-TTCCAGA-T-GGCCCTCAT--TACCCC-ACCAACA----AGGG-ACA--C--C-CCC-----TCCCN-NNNNNNNNNNNNNNNNN-NN-----N----------N-NNN-NNNNN----NNNN-NNNNNNNN--NNN-NNNNNN-------NNNNNN-NNNN-N--NNNNNNNNNNNNNN-----NNNN----NNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNA---TT---TTCCA--CTGA-CGGCAACG------------AATGT-TTCTACAATGA---ACCAGAAT-GC--CAACTTGGCACAATGAAA--A--ACAAAATAATTACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--TTTC-AGTTctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|15 : tctgTC-----CCA-----GGAGTAAATAACAAA-CA-----TAA--------T-T-T-ATCAT----GACATCTTCCTAT--AAT-GCAGTA-------TTT----TGTA-T--TTAAGATATAAAAA-----TGTT----CAAGG-ATA--TC-CCCtctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|13 : aacttatatatttttcttaataaaaccatttaaaagtcaatattggACATCTGGAGTAAATGACAACATA-----T----------T-TTT-ACCCT----AAAA--TCACTAG--AAT-GCAGCA-------TTT-TT-TGT-----TTTAAATATAAAAA-----AGTC----CAGGcaccaacaaatggaggagacacatactaatgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|7 : gcaaatactttgccccccccccccattttttttataaaaatgtaaaaaggtcacaaaataccaaACATCTGGAATAAATGACAACATA-----T----------A-TTT-TTCAT----AAAAACTCCGTAG--AAT-GCAGCA-------TTTG-T-TGT-----TTGAAATATCAAAA-----CTTT----CCAGT-ATAAGAC-CCCGTACTGCCACCAGCttaacaccccgtatcggatcccaccccttcacactcttccttacattttggcttgtcattcatgtggtttaaaacccattttaagctcattttaatac
gi|9 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaatattttcataaaaatgtctggaggtcacaaaatagaaaatcaactaaACATCTGGAGTAATTGACAAC-AA-----TGTT-------T-TAT-CCTG-----AGAA-CTAACCAA--GAT-GCAGCA-------TTTGAT-T-------TTAAGATATAAAAA-----TGTT----CCGGT-GGA------CCATACCCCCGCCAGCGActtcttcacactcattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|2 : atcaaA-TTGGAGTAAATAACGAT-CA-----T----------T-TC--CCCAT----TA----TTGTTACCAAATTGCAG-A---------------ATACA--TCAAGGT------------TTTC----CAGGG--GAGACCACTCGTACTCTTACCGGCAAGGGTCCATCTCTCCCAAACTGA-AGTAAATGAAAACCATATCTGTTAT--TCTAAAA--ACTCACTAGAAT-GCAGCATTTTGcaacatcatctctcacattctctccatctaaatgggaaacccggaggagatttaataataacgtttaaacaaaatattgatgtaaattacgactatttttttcctaaaattcaatatgatataagatatcaaaaattccaggggagacctcccatacctcagagaggacaccctatccca
gi|8 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactTAACAAC-CA-----TAAATTGTTTGTATCC-CCCAA----AAAA-CTCACAAT--AAT-GCAGCT-------TTTG-T-TGT-----TTAAGATATAAAAAAATGTCTCT----CTGTG-GGA-----CCCATACTCCTACCAGCAAGGGTGTAT---TCCT---CTGtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|11 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtagtaaaAACAAT-CA-----TAC--------T-TTTATCCTT----AAAA-CTCGCTAG--ACA-GCAGCA-------TTTG------G-AGTTTAAGATATCAACA-----CTTT----CCGGA-ATA-ACC-CCC---ACCCCTC------------AT---TCCCA--CTAACGGGAtttgcccatcgccccaataattgaaacat
gi|6 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaatatggaataaccAACAAC-CA-----T----------G-T-T-ATCAT----AAAATCTTCTTAT--AAT-GCAGCA-------TTTG-G-TATA-----TAAAATATCAAAA-----TGTT----CAcgagagaaaccccaccccattctccctcca
gi|20 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggagtaaA-----T----------T-TAT-CCTAT----AAA--TTCAATAG--ACC-GTAGCA-------TTT----TGTG-T--TTAAGATATCAACA-----TTTT----C---T-AGAGATG-CTCGTAAaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|27 : tttcaaagatacaacattttgtagtaaataaaagtcatAT-GCAGCA-------TTTGTT-TTT-----TTAAGATATAAATA-----TTTT----Cctgtatccccgtacctccgtatccccgctcttc
gi|12 : CTATAATTC---ACAAGACTTGCA-CACTTTGGCACTTAGAAA--ACCA-AAATTcctttccctaacaatcgatcacaccatcttccacactctttcc
gi|26 : ctgctaggaaAAT-GCA-TGATTTGGCACTAAAAAAGCA--A-AAACAAA--A-AGGTAC-CCCCAAAACCACCCT-AAAATTATATT--TTTCAATTTtcctaggggagacctctctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|16 ): ATATTATATTTTTTTCACAAAATATTGGTTCCTGGAGTAAAATAATGACAACAACATTTTATTATAAATCTTCTTATAATGCAACGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|25 ): ATTATAATTTTTTTATTATACCACCACCACGTACATTTTGGCTCCTGGTGCATGCGGTAGCGGGTTTAAAACAAGGTGAACTTTTTTTAGTTAGTCTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 22 66666666666666666666 111111 11111 111 22222222222 1 11111111 111111111 11111 22222222222222222222222222 1111111 222222 111111111111 444444444444444444444444444444444444444 1111111 555555555555555555555555 2222222222222222222 111 44444444444444444444444444444444444444 6666666666666666666666666666666666 2222 1 000000000000000000000000000000000000000000000000000000000000 111 777777777777777777777 1 33333333333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 444444 1111 11 1111 333333333333 000000000000000000000000000000000000000000000000 111 11 1111 1111 3333333 111 11 1111 2222222222 11 1111 22222222 222222222 11 111 111 5555555555555 2 4 2222 222222 11
lowQualScore : 88 555 22 111111 5 33 8 66666666666666666666 8 999999 22222 4 1 1 333 88 4 4 00000000000 2 3 7777 6 2 8888888 44 66666666 5555 2 9999 0 2 4 2 444444444 66666 3 8888888 3 66666666666666666666666666 99999 2 44 3333333 444444 777777777777 1 555555555555555555555555555555555555555 1111111 666666666666666666666666 4 0 1 7777777777777777777 555 3 3 3 77 55555555555555555555555555555555555555 666 1111111111111111111111111111111111 8888 5 1 3333 4 88 5 5 2 3 9 555555555555555555555555555555555555555555555555555555555555 3 777 8 8 3 777777777777777777777 0 8 66666666666666 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 999 66 222222 11 33 4 7 1 1 3 0 1 8 8888 11 3 1 9999 8 8 8 1 444444444444 88 1 1 0 33 8 777777777777777777777777777777777777777777777777 0 1 2 8 1 2 4 777 8 0 3 8 3 33 3 7777 1 99999 88 1111 555 7777777 444 8 99 8 0 3 2222 3 4 99 5555555555 5 2 7 11 0 2 4 44 4444 5 1 55555555 33 2 666666666 2 11 11 111 6 333 1 7777777777777 0 1 0 1 8 0 1 1 2222 1 777777 8 999 44 1 2 6 88 1
lowQualScore : .. ... .. ...... . .. . .................... . ...... ..... . . . ... .. . . ........... . . .... . . ....... .. ........ .... . .... . . . . ......... ..... . ....... . .......................... ..... . .. ....... ...... ............ . ....................................... ....... ........................ . . . ................... ... . . . .. ...................................... ... .................................. .... . . .... . .. . . . . . ............................................................ . ... . . . ..................... . . .............. .. .................................................................................................................................................... ... .. ...... .. .. . . . . . . . . .... .. . . .... . . . . ............ .. . . . .. . ................................................ . . . . . . . ... . . . . . .. . .... . ..... .. .... ... ....... ... . .. . . . .... . . .. .......... . . . .. . . . .. .... . . ........ .. . ......... . .. .. ... . ... . ............. . . . . . . . . .... . ...... . ... .. . . . .. .
lowQualScore : 00 222 88 222222 0 22 0 22222222222222222222 0 222222 99999 3 0 0 111 33 4 4 00000000000 4 3 1111 2 3 5555555 22 22222222 2222 7 7777 3 7 9 9 666666666 44444 3 9999999 3 66666666666666666666666666 66666 3 66 0000000 222222 333333333333 2 555555555555555555555555555555555555555 8888888 000000000000000000000000 0 9 6 2222222222222222222 111 6 6 5 33 99999999999999999999999999999999999999 444 3333333333333333333333333333333333 5555 9 0 1111 0 00 0 7 5 3 3 555555555555555555555555555555555555555555555555555555555555 2 555 0 8 8 000000000000000000000 0 0 22222222222222 22 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 22 555555 22 00 0 5 0 8 8 6 0 0 8888 44 2 0 6666 0 0 0 0 888888888888 88 0 0 8 88 0 000000000000000000000000000000000000000000000000 6 0 5 0 0 5 5 555 2 8 8 8 8 00 2 0000 0 44444 88 0000 666 8888888 000 0 00 0 2 6 1111 3 3 22 0000000000 7 1 6 22 8 3 4 66 4444 0 0 88888888 00 8 000000000 5 00 55 777 7 999 0 5555555555555 0 0 0 0 0 8 0 4 8888 0 666666 2 888 22 0 5 7 33 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTCAGGTT-------GAGGG-GGGGTANGGG-AGCATATA------CTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAA-TA---------CCAAACATCTGG-AGTA----AATGACAA-C-AT-A-----TT--T--TATT--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGNTGT-TT------T--AA--NA-ATCA-AA--AT-TTT-CCGGG-------GTAG----GNCCC------CGTACCG----CCACCAG--C-CCNAC-TCA--A---ACTCTCCATC-------ACGTTTTGGCTC-----G-CAG----T-G---CATG-------T-------GGT-------TTAAAACCCGTTG------GAAGCTC--G--T-TTTTT-AATACATCTTAT-TT------TT---TTCTTAATAAAAC-GTT-TAAANGTCAC-AAA------------ATA-----TT-------GG-------AGTAAATAACAAC---CAT------T-TT---TCCCC-TTATA-A----TCACT----ANAATGCAGCATTTGG-T-TTTAAG-ATATCAAAATNTTCCAG-AGGAGACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TA-GTTATTCTAAAA---ACTCACTAGAATGCAGCATTTGGTG-TTTTTAATATCATTTTTTTTC----GCG-----GTTGG----GGCAG-GG---GTG-GTGCAT-CC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATGTCGAGGG------GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAG-TTTAATAAAAACGTNTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATC-TTTTTTCTTTNAA--ANTTGCAAAAAA-TACAGCATTAGGTTTTTA-AGAT---AAAA----------G--------T--CCAGG-----------TACCCCAACCAGCAGNGGACAAC-CACTCCAAGACCAAAC---TGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATT-CAGCATTTGGTGTTT----TATC-TA-AATTTT-TTCCGGGGTAGNNCCCAN-T-NCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGNGTA----ANTAACAAC--CAT----------T-TCTCCCATAAAACTNACTAGAATGNAGCATTT-G-TTNT--TT-AGGATATAAAAA-----TTNTCCGGGAGAGGTC--CC-C-TACTCCAACCAGCAGGGA---ATTC-C-CACTGAGGGCAACGAGTGCCA-TCCTANTGTGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAAC-A-AAAATAAT--TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--TTTCAGTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGNNTGGCGG---GGCCCCACCCCAAT-GTTCAGGTT-------GAGGGTGGGGTANGGG-AGCATATA------CTTTGCCCC--C--CCCCCANTATTTTNATAAAAATGTCGAAAGNCCAC-AAAA-TA---------CCAAACATCTGG-AGTA----AATGACAA-C-AT-A-----TT--T--TANC--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGTTGT-TT------T--AA--NA-ATCA-AN--AT-TTT-CCGGG-------GTAA----NNCCC------CGTACCG----CCACCAG--C-CCTAC-TCA--A---ACTCTNCATT-------ACGTTTTGGCTC-----G-CA-----T-G---CATG-------T-------GGT-------TTAAAACCCATTG------GAAGCTC--A--T-TTTTT-AATACATCTTAT-TT------TT---TTCTTAATAAAAC-GTT-TAAANGTCAC-AAA------------CTA-----TT-------GG-------AGTAAATAACAAC---CAT------T-TT---TNCCC-TTATA-A----TNACT----AAANTGCAGCATTTGG-T-TTTAAG-ATATCAAAATNTTCCGG-AGGAGACC-CCCGTAC-----C-CAG-------------------AACTGGAGT-------AACCATATAT-TA-TTTATTCTAAAA---ACTCACTAGAATGCAGCATTTGGTG-TTTTNAATATCATTTTTTTTC----GCG-----G--GG----GGCAG-GG---GTG-GTGC-T-CC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATGTCGGGGG------GCCTACTCCAACCAGCAGAGAACACCACACNCTCTCAGTGNCCACAGTGCATGACGTACCGGGTTTAAAACCCANTGGAAGTTCANTTTATTTGATACATNTTATAG-TTNAA-AAAAACGTTTAAAAGTCACAAAA---TATTCGGGAG-TAA-ATAACAATT-TTCTTNCTTTTAA--AATTGCAAAAAA-TACAGCATNAGGTTTNCA-A-AT------A----------G--------T--CCANG-----------TACCCCAACNAGCAGGGGACAAC-CNCTCCAAGATCAAAC---TGGAGTAAATGACAACCATATNTTTTATCCTAAAAACTCACTAAAATG-CAGCATTTGGTGTTT----TATC-TA-NATTTT-TTCCGGGGTAGGNCCCAA-T-ACCCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGAGTA----AATGACAAC--CAT----------T-TCTCCCATAAAACTCGCTAGAATGCAGCATTT-G-TTGT--TT-AAGATATNAAAA-----TTTTCCGGGAGAGGCC--CC-CGTACCCCCACCAGCAAGGG---ATTC-C-CACTGAGGGNAACGAG-GCCA-TCCTGNTGT-TTCTANAAT-AACNAGAAT-GCACGNTTTGGCACTAAGAAAA--A-AAANTAAT--TACGGGNGNCCCCCNAAANCACCCCCAGAATTATATT--TTTCAANTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTCAGGTT-------G----CCGGGT-CGGG-AGCATATA------CTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT-----------------------AACATCTGG-AGTA----ACTGACAA-T-AT-A-----TTAGT--TAAT--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGT-TT------T--AA--TA-ATCA-AT--AT-TTT-CCGGG-------ATAA----GACCC------TGTAACG----CCACCAA--C-CCTAC-TCA--A---ACTCTGCATC-------ACTTTTTGGCTC-----T-CA-----T-A---CATG-------T-------GGT-------TTAAGTCCCATTG------GAAGCTC--A--T-TCTTT-AATACATCTTAT-TT------CT---TTCTTAATAAAAC-GTT-TACATGTCAC-AAGT-----------CTA-----TT-------GG-------AGTAAATAACAAC---CAT------T-TC---CCCCC-TTATT-A----TTACC----AAATTGCAGTATTTGA-T-TTTAAG-ATATCAAGATATTCCAG-AGGAGACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAA---ACTCACTAGGATACAGCATTTGGTG-TTTTTAATATCATTTTTTTTC----GTGTTTGTGTTGG----GACAG-GG---GTG-ATGCAT-CCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGGG------GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAG-TTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTT-TTCTTTTTTTTAA--ATTTGCAAAAAAATATCGCATTAGGTTTACA-A-AT------A----------G--------T--CCAGG-----------TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAAC---TGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTT-CAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAGGTCCCAATT-TCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTT----ATTAACAAC--CAT----------T-TCTCCCATAAAACTTATTACAATGCAGTATTT-GCTTATAATT-AAGATATGAACA-----TTTTCAGGGAGAGGTC--CC-CGTAATCCTTCCAGCAAAGA---ATTC-C-C-CTGAGGGAAACGGGTGCCATTCCTACTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--A-AAATTAA----AGGGAAG--CACCAAAAACACTCTCAGAATTAAATTAATTTCA
gi|11 : gcT-------ACGCTTTGGCTC-----C-TAG----T-G---CATG-------TGGTAACAGGT-------TTAAAAC-------------AAGGTG--AACT-TTTTTAAATAAATCT--T-TT------GT---TTCTGAA-AAAAC-TTT-TAAAAGTCAC-AAA------------ATA------T-------GG-------AATAACCAACAAT---CATAC----T-TT---TATCC-TTAAA-AC---TCGCT----AGACAGCAGCATTTGGAG-TTTAAG-ATATCAACACTTTCCGG-AATA-ACC-CCC--AC-----C-Ctttga
gi|12 : ttattattgttattattatcatccaaccaccacgCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCA-AAATTTCC--TAGGGGAGACCTCctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|13 : ctgctaggaaGCAAATA------CTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAA-TA---------CCAAACATCTGG-AGTA----AATGACAA-C-AT-A-----TT--T--TTAC--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGT-TT------T--AA--AT-ATAA-AA--A--AGT-CCAGG-------TTAA----CACCC------CGTATCGGATCCCAC-----C-CCT---TCA--C---ACTCTTCCTT-------ACATTTTGGCTT-----GTCA-----T-T---CATG-------T-------GGT-------TTAAAACCCATTT------TAAGCTC--A-----TTTT-AATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAA-TA---------TCAAACGTCTGA-TTTA----CAT--CAA-T-AT-------TT--T--TATC--CT-----AAA---ACTCGCTTAAATA-AATAATTTGGTAT-TTAAA---T--AC--AA-AACA-AA-------T-CCGGA-------GGAG----GCCCT------CGTATCG----CCACCAA--C-CCCA
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATT-TAAAAGTCA----A-------------TA-----TT-------GGTCCCAGGAGTAAATAACAAA---CAT------AATT---TATCA-TGACATC----TTCCT----ATAATGCAGTATTTTG-TATTTAAG-ATATAAAAATGTTC--A-AGGATATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TA-tcc
gi|16 : aacttaCAC-AAAA-TA---------TTGGTT-CCTGG-AGTAAAATAATGACAA-CAAC-A-----TT--T--TAT-----T--ATAAA---TCTTCTTATAATG-CAACGTTTGatgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|16 : atattatatttttttCTGGAGTAAAATAATGACAACAACAT----------T-T-TATTATAAATCTTCTTATAATGCAACGTTT-G-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : atattatatttttttcacaaaatattggttcACAAC-TAATCTAA---TAAACCTTTGAAGTTAATGGAAACTAT-TTTCTTATTCTAAAAGGTCACTAAAATGTCAA-ATTTGGTGTTT----TAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aAAACCTTTGA-AGTT----AATGGAAA-C--T-A-----TT--T--TCTTATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGT-TT------T--AAATTATATTA-AA--AT-GTC-CCaattatattaaaatgtcccttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTCAAGTT-------G--------GTA--GT-AGCATATT------CTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCAC-AAAAATA---------ACAAACATCT-----TA----T-TTACATTC-AT-A-----TT--T--TTAT--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGT-AT------A--AA--TA-cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAA-TA---------CCAAACATCTGG-AGTA----AATGACGG-C-ATAA-----TT--T--TCAC--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGT-TT------C--AA--AT-ATCAGAA--AT-GTG-TATGG-------TTAA----GGATC------CGTACCG----CCACCAATCC-CCAAC-CCC--ATCCACTTTACATTCTTCCTGACGTTTTGGCTTG----G-CA-----T-G---CATA-------T-------GGT-------TTAAAGCTCATTT------GAAGCTC--A--T-TTTT--------TTTTA----------TT---TTCTTAATAAAAC-GTT-TAAATGTCACAAAA------------CTA-----TT-------GG-------AGTAAATAACGAT---CA---------TT---TCCCCATTATT-G----TTACC----AAATTGCAG-------------AAT-ACATCAAGGTTTTCCAG-GGGAGACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT----GTTATTCTAAAA---ACTCACTAGAATGCAGCATTTTGTG-TTTT-AATATCATTTTTTTCC---------------GG----GGCAGAGG---GAA-GTGT-T-CC--TCACTAGCTCcgaaa
gi|2 : cgcaacccat---------CCAAAC---TGA-AGTA----AATGAAAA-CCAT-A-----TC--TGTTATT--C-T--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGT-TT------T--AA--T--ATCA-TT--TT-TTT-CCGGG-------GCAG----AG----------GGA------------AG--T-GTTCC-TCACTA---GCTCTCCCTA-------GCGTTTTAACTA-----G-CA-----GAG---CATGGGGTTCTT-------GGT-------TTAAAATCC----------GA------------TTCTA-AATACATC----------------------TGATA-----GTT------GTTA--AAG------------ATA-----TT-------GA-------AGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCTCC--TAAAGCTAACTAGAATAGAGCATTTCG-TTG---TT-AGAATATAAAAA-----acccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccAGAATATAAAAAAAATCTAGGG------GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTAT-AAAAACG-TTAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATC-TTTTTTCAGTGAA--AA-TGC-AAAAA-TACATCATTAGGTTTTTA-AGAT------C----------GCAAACGTTT--CCATG-----------TACCCCCACaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgtt-AAGA-TA---------C--AACATTTTGTAGTA----AATAAAAGTC-AT-A-----TT--T----AT--CCT--A-TAA---ATTCAATAGACCG-TAGCATT--TTGTGTT------T--AA--GATATCA-AC--AT-TTT-CTAGAGATGCTCGTAACTGTATCCC------CGTACCT----CCG-TAT--C-CCCGC-TCc
gi|22 : tttcaGGGTCCAAGGGAGGATTGGT---------CCACC--AAT-GTTCAGGTT-------GA------GGTATGGGTAGCATATA------CCCCTCCCC--T--CCCCttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTG-TTTTTAATAGC-TTTTTTTTC----AGG-----GTTGGATGTGG-AG-GG---ATG--------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : TGCCG----CCACTAG--C-TCAAT-CCA--ACACACTCTT--TC-------ACGTTTTAACTT-----G-CAG----T-G---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : gccgcattttgtgtttttaatagcttttttttcagggttggatgtggagggaAGGTGTGGCGG---GGCCC-ACCCCAAT-GTTCAGGTT-------GAGGGTGGGGT-GGGG-AGCATATA------TTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacT-------ACATTTTGGCTCCTGGTG-CA-----T-G---CG-G-------TAGCG---GGT-------TTAAAACa
gi|26 : attataatttttttattataccaccaccacgAAT-GCATGATTTGGCACTAAAAAAGC-A-AAAACAA----AAAGGT-ACCCCCAAAACCACCCT-AAAATTATATT--TTTCAATTTaaggtgaactttttttagttagtcttt
gi|27 : ATGCAGCATTT-G-TTTT--TTTAAGATATAAATA-----TTTTCCctga
gi|3 : -TA-AATTTT-TTCCAGA-TGGCCCTCAT-T-ACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNN----NNNNNNNNN--NNN----------N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNN--NN-NNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNNNNNNNNN---ATTTTC-CACTGACGGCAACGA------------ATGT-TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAA--ACAAAATAAT--TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--TTTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : tctgT-GTATGATTTGGCACTTAGAAAA--C-CAAATTTTCATATGGGAGACTCCCT---CCGCCCCctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaac-AAA---ACT------AATG-CAGCATTTGGT-T-TT------T--AA--AATATTA-AA--CT-TTTTCCGGA-------GTAG----TCCCC------TGTACT----------AG--G---------G--A---ACCC-------------ACATTTTG-CTC-------CAAT---T-G---CATG-------A-------GGTACCGAGTTTAAAACTCA---------GAAGTTT--G--GGTTTTT-AAAACATCTTATATT------TT---TTCTTAA---AAC-ATT-TAAATGTCAC-AAA------------ATA-----TT-------GGTCCCAGGAGTAAATAACAAC---CATG-----T-TT---TATC----ATA-AAATCTCCCT----ATGGTGCAGCATTTGA-TATTTAAG-ATATCAAAATaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttCATACAT-CT-GTTATTCTAAAAGACACTCACTAGAATGCAGAATTTGATGTTTTTTAATATCGTTTTATTTT----AC---------AG----GGCAG-GGTTTGGG-GTGCATGCC-GCCACTAGCTCAATCCAgaattaaaaaacatc
gi|4 : A-C-AT-C-----TG--T--TATT--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGT-TT------TTTAA--TA--TCG-TTTTAT-TTT-ACAGG-------GCAG----GGTTTGGGGTGCATGCCG----CCACTAG--C-TCAAT-CCA--AC--ACTCTTCATC-------ATGTTTTAACTC-----G-CAG----T-G---CATG-------TGGTTTTGGGT-------TTAAAATCC---G------G-------------TTCTT-AATACATCTGAT-acactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catT----------T-CCTCCCCTTTAATTAGCTAGAATAGAGCATTT-G-GTCT--GT-AGAATATAAAAA-----T----CGAGAAAAGTT-------TACTCCATCCAGCAGAGA---ACAC-CACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGAAAA----GTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAG-TTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATT-TTTTTTCTCT------------AAAAA-TACAGCATAAGG-TTATA-A-AG------ATCAGAAAAATG--------T--CCAGG-----------TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAAC---TGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATT-CAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAAGACTCA--------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTA----ATTTACAAC--CAC----------T-TCCCTC-TAAAACTTACTAGAATGAAGAATTT-A-CTTA--TT-AAGATATGAAAA-----ATGTTTGGGAGAGGTA--CC-C-TACCCCAACCAGCCGGGG---ATTC-C-C-CTGAGGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtCGCAGAGCATGAGGTTCTGGGTTTGAGATCCG------GTTC-------TTAATACATGTGATAG-CTG-----------TTAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAACCAACT----AGAA-TAGTGCATTTGGTTTTTAGA-ATATAAAAA----------A--------T--CCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCtgct
gi|5 : ccaacattctccctgacgtttaact---TTCTTAATACA-T-GTGATAGCTGTTA--AAA------------CTA-----GC-------AA-------AGTAAATAGCAAC---CA---------TT---CCCCC-TTTTA-AC---CAACT----AGAATAGTGCATTTGG-T-TTTTAGAATATAAAAA--ATCCAG-AGGtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggAGTA----AATAGCAAC--CAT----------T-CC-CCCTTTTAACCAACTAGAATAGTGCATTT-G-GTTT--TT-AGAATATAAAAA-------ATCC---AGAGGCCAGCCGCCTACTCCAACCAACAGTGA---ACAC-CACACTccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaAGAATATAAAAAAT-CCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAG-TTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATC-TTTTTGCTTTAAA--ACTTGCAAAAA--TACAGCATAACGTTTTTA-AGATCACAAAA----------G--------TTTCCAGG-----------AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAAC---TGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATT-CGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCCCG-TAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGTA----ACTAACctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggttttt-------GGT-------TTAAAACCCATGG------GAAGTTTTGA--T-TATTT-AA-ACATTCTAT-TT------TT---TTCTT--T-------CT-TAAAAGTCAC-AAA------------ATA-----TTGGTCCCAGG-------AGTAA--AACAAC---CAT------G-TT---ATC-----ATA-AAATCTTCTT----ATAATGCAGCATTTGG-TATATAAA-ATATCAAAATGTTCtagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : atgaagtactgGGAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATG-CAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---ACAACCCAC-T-CATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGGGGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAA-TAGAAAATCAACTAAACATCTGG-AATA----AATGACAA-C-AT-A-----TA--T--TTTT--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGT-TT------G--AA--AT-ATCA-AA--AC-TTT-CCAGT-------ATAA----GACCC------CGTACTG----CCACCAG--C-CTTCT-TCA--C---ACT---CATT-------Aatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAAT-GTC-TGGAGGTCAC-AAAATAGAAAATCAACTAAACATCT-------GG-------AATAAATGACAACATATAT------T-TT---TC------ATA-A----AAACTCCGTAGAATGCAGCATTTGT-TGTTTGAA-ATATCAAAACTTTCCAGTATAAGACC-CC-GTACTG---C-CA----------------------CCAG------------CC-----------TTCTTC---AC---ACTCATTAGAATGCAGCATTTGGTG-TTTTCAATAT-ATTTTTTTACAGCAGCA-----G--GG----GG-AG-GG---GTGCGTG----CC-ACCACTAGgaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaataT--A-AAACTCACTCACTTAAATA-CAGCATTTGTTTT-TT------A--AA--TA-
gi|8 : A--A---AGTCTCCCTC-------ACATTTTGGCTC-----A-CAGAACCT-GAGTCACC-------G-------GAT-------TTGAAACCTGTTGACGCCGGCGGTTT--G--C-TTTTT-AATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAAT-ATT-CAAAAAACAC-AAA--------------A-----TG-------AGT------AGTAAATAACAAC---CATAAATTGT-TTGTATCCCC-CAAAA-AAC--TCACA----ATAATGCAGCTTTTGT-TGTTTAAG-ATATAAAAAtatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtagtaaataacaaccataaattgtttgtatcccccaaaaaactcacaataatgcagcttttgttgtttaagatataaaaaaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAA-TG---------------A---GT-AGTA----AATAACAA-CCAT-AAATTGTT--TG-TATC--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTGT-TTAAGATAT--AA--AA-A--A-AT--GTCTCT-CTGTG-------GGA--------CC------CATACTC----CTACCAG--C-aatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgAGTA----AATAACAAC--CATAAATTGTTTGTATCCCCCAAAAAACTCACAATAATGCAGCTTTT-G-TTGT--TT-AAGATATAAAAAAATGTCTCTCTGTGGGA------CC-CATACTCCTACCAGCAAGGGTGTATTC-C-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtA---------TCAAACATCTGG-AGTA----ATTGACAA-CAAT-G-----TT--T--TAT---CCT--G-AGA---ACTAACCAAGATG-CAGCATTTG--AT-TT------T--AA--GATATAA-AA--AT-GTT-CCGGT-------GGA---------C------CATACCC----CCGCCAG--CGACAACATCA--------TCTC--TC-------ACATTCT--CTC-------CA-----T-C---TAAA-------T-------GG----------GAAACCCGGAG------GAGA------------TTT-AATA-AT-----------------------------AAC-GTT-TAA-----AC-AAA------------ATA-----TT-------GA-------TGTAAATTACGAC---TAT------T-TT---TTTC----------------CT----AAAATTCAATAT---G-A-TATAAG-ATATCAAAA-ATTCCAG-GGGAGACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 22 22222222 444444444444 111111 11111 1 11111111111 1 11111 222222222222222222222222 11111111111111111111 11111111111111 1111111 1111 11111 222222222222222 2222222 333333333333333333333333 44444444444444444444444444444 55555555555555555555555555 66666666666666666666666666666666666666 222 222222222222 1 0000000000000000000000000000000000000000000000000000000000000 555555555555555555 1 4444444 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1111 3333333333333 5555555555555555 33333333333 111 1111 1111 22222222 111 11 33333333333333333333 22222222222222222222222222 1 1 4444444444444444444 11 5555555 1 11
lowQualScore : 88 555 22 111111 5 33 8 99999999 999999999999 8 999999 22222 4 1 1 111 0 77777777777 3 7777 3 3 9999999 44 77 11111 4 5555 7777 0 2 1 888888 555555555555555555555555 3 2 77777777777777777777 7777 2 55 88888888888888 5 0000000 4444 1 77 11111 555 333333333333333 1111111 3 0 777777777777777777777777 0 55555555555555555555555555555 3 1 3 333 3 33333333333333333333333333 555 33333333333333333333333333333333333333 1 1 333 3 66 5 777777777777 1 6 4444444444444444444444444444444444444444444444444444444444444 7 2 3 55 1 000000000000000000 8 0 0000000 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 0 999999 0 0 1 0 5 1 4 0 8888 6 1 1 9999 8 8 3333333333333 8 1 1 11 9999999999999999 88888888888 0 1 8 0 2 0 777 0 3 8 3 8 3 7777 1 99999 88 1111 333 44444444 444 8 99 8 2 1 3 3 44444444444444444444 11 1 1 4 66 1 55 4 0 0 55555555555555555555555555 5 66 0 1 3 99999999 0 5 0 8 2222222222222222222 0 8 0 1 00 1 0000000 1 0 3 44 1 5 88 3
lowQualScore : .. ... .. ...... . .. . ........ ............ . ...... ..... . . . ... . ........... . .... . . ....... .. .. ..... . .... .... . . . ...... ........................ . . .................... .... . .. .............. . ....... .... . .. ..... ... ............... ....... . . ........................ . ............................. . . . ... . .......................... ... ...................................... . . ... . .. . ............ . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . . . .... . . . .... . . ............. . . . .. ................ ........... . . . . . . ... . . . . . . .... . ..... .. .... ... ........ ... . .. . . . . . .................... .. . . . .. . .. . . . .......................... . .. . . . ........ . . . . ................... . . . . .. . ....... . . . .. . . .. .
lowQualScore : 00 555 88 222222 0 22 0 00000000 888888888888 0 222222 99999 3 0 7 333 0 99999999999 5 7777 3 3 4444444 22 33 77777 0 2222 2222 7 9 0 777777 555555555555555555555555 3 6 44444444444444444444 7777 0 00 55555555555555 2 8888888 2222 6 22 22222 444 555555555555555 7777777 3 5 000000000000000000000000 5 22222222222222222222222222222 6 2 3 888 3 22222222222222222222222222 888 55555555555555555555555555555555555555 0 5 222 6 44 0 999999999999 4 6 3333333333333333333333333333333333333333333333333333333333333 3 5 2 88 2 000000000000000000 8 0 8888888 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 0 7 2 8 0 6 4444 6 0 0 6666 0 0 6666666666666 0 0 4 88 0000000000000000 00000000000 6 0 0 6 5 2 555 8 8 2 8 0 2 0000 0 44444 88 0000 444 22222222 000 0 00 0 2 0 1 0 22222222222222222222 11 0 0 0 22 0 55 0 7 3 11111111111111111111111111 0 66 2 5 6 55555555 0 0 0 8 2222222222222222222 6 0 8 4 44 4 4444444 0 8 8 22 0 0 33 7
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T--TNTT--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCA-AA--A-----TTTT-CCGGGGTAG-GACCC------CG-----TACCG----CCACCAG--C-CCNAC-TCAA---ACTCTCCNTC-------ACGT----TTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTT------GGAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GGAGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGG-TGTTTAAG-ATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCGCA---AA-A--GTTTCCAGG-----------TACCCCAACCAGCAGNGGACAAC-CACTCCAAGACCAAAC---TGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAAT-TCAGCATTTGGTGTTT----TATC-TA-AATTTT-TTCCGGGGTAGNNCCC-ATT-NCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT----------T-TCT-CCC-TAAAACTNACTAGAATGNAGCATTT-G-NTNT--TT-AAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A--T-TCC-CACTGA-GGGCAACGAGTG-----CCA-TCCTACTGTGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATTC-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--TTTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T--TATT--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGNTGTTT---T--AA--NA-A--TCA-AA--A-----TTTT-CCGGGGTAG-GNCCC------CG-----TACCG----CCACCAG--C-CCNAC-TCAA---ACTCTCCATC-------ACGT----TTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTT------GGAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GGAGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGG-T-TTTAAG-ATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAGT-TATTCTAAAAACTCACTAGAATGCAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGCATCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATGTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTNTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAANTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGAT---A---AA-A--G--TCCAGG-----------TACCCCAACCAGCAGNGGACAAC-CACTCCAAGACCAAAC---TGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAAT-TCAGCATTTGGTGTTT----TATC-TA-AATTTT-TTCCGGGGTAGNNCCC-ANT-NCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGNGTAANTAACAACCAT----------T-TCT-CCCATAAAACTNACTAGAATGNAGCATTT-G-TTNT--TT-AGGATATAAAAA-----TTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGGGA---A--T-TCC-CACTGA-GGGCAACGAGTG-----CCA-TCCTANTGTGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACAAAAATAAT---TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--TTTCAGTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTC--------AGGTTGCCGG-G---T-CGGG-AGCATA------TACTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT----------------------AACATCTGGAGTA----ACTGACA-AT-AT-A-----TTAGT--TAAT--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGTTT---T--AA--TA-A--TCA-AT--A-----TTTT-CCGGGATAA-GACCC------TG-----TAACG----CCACCAA--C-CCTAC-TCAA---ACTCTGCATC-------ACTT----TTTGGCTC-TCA-----TA---CATG-------T-------GGT-------T-TAAGTCCCATT------GGAAGCTC--AT-TCTTTAATACATCTTAT-TT------CT---TTCTTAATAAAA-CGTTTACATGTCACAAGTC-T-A-----------------TT-------GGAGTAAATAACAAC---CAT------TTC---CCCCC-TTATTA----TT--A-----CCAAATTGCAGTATTTGA-T-TTTAAG-ATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAGTTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTTTTTAAATTTGCAA--AAAAATATCGCATTAGGTTT-----AC---A---AATA--G--TCCAGG-----------TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAAC---TGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATT-TCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAGGTCCCAATT-TCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCAT----------T-TCT-CCCATAAAACTTATTACAATGCAGTATTT-GCTTATAATT-AAGATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A--T-TCC-C-CTGA-GGGAAACGGGTG-----CCATTCCTACTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA-AAAATTAA-----AGGGAAG--CACCAAAAACACTCTCAGAATTAAATTAATTTCATTT
gi|11 : gcCCACC-------ACGTACGCTTTGGCTC-CTAG----TG---CATG-------T-------GGTAACAGGTT-TAAAACAAGGT------GAA--CT----T-TTTTAAATAAATCTT---TT------GT---TTCTGAA-AAAA-CTTTTAAAAGTCACAAA-A-T-A------------------T-------GGAATAACCAACAAT---CATAC----TTT---TATCC-TTAAAAC---TC--G-----CTAGACAGCAGCATTTGGAG-TTTAAG-ATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaTGGAATAACCAACAATCATAC--------T-TTTATCCTTAAAACTCGCTAGACAGCAGCATTT-G-GAGT--TT-AAGATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A--T-TCC-CACTAACGGG--ACGAGAGAAACCCCA-CCCCATTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCCTAGGGGAGACCTCctccctcca
gi|13 : ctgctaggaaGCAAA------TACTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T--TTAC--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGTTT---T--AA--AT-A--TAA-AA--A------AGT-CCAGGTTAA-CACCC------CG-----TATCGGATCCCAC-----C-CCT---TCAC---ACTCTTCCTT-------ACAT----TTTGGCTT-GTCA----TT---CATG-------T-------GGT-------T-TAAAACCCATT------TTAAGCTC--A---TTTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAAT---------ATCAAACGTCTGATTTA----CAT--CA-AT-AT-------TT--T--TA-T--CCT----AAA---ACTCGCTTAAATA-AATAATTTGGTATTTAAAT--AC--AA-A--ACA-AA-----------T-CCGGAGGAG-GCCCT------CG-----TATCG----CCACCAA--C-CCCA
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATTTAAAAGTC----A-A-T-A-----------------TTGGTCCCAGGAGTAAATAACAAA---CATAA----TTTA--TC------ATGA-----C--ATCTTCCTATAATGCAGTATTTTG-TATTTAAG-ATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-tcc
gi|16 : aacttaTCAC-AAAAT---------ATTGGTT-CCTGGAGTAAAATAATGACA-ACAAC-A-----TT--T--TAT-----T--ATAAA---TCTTCTTATAATG-CAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttACAAC-TAATCTAA---TAAACCTTTGAAGTTAATGGAAACTAT-TTTCTTATTCTAAAAGGTCACTAAAATGTCAA-ATTTGGTGTTT----TAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aAAACCTTTGAAGTT----AATGGAA-AC--T-A-----TT--T--TCTTATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGTTT---T--AAATTATA--TTA-AA--A-----TGTC-CCaattatattaaaatgtcccttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTC--------AAGTTG--------GTA--GT-AGCATA------TTCTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCACAAAAAT---------AACAAACATCT----T-----ATTTACATTC-AT-A-----TT--T--TTAT--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGTAT---A--AA--TA-----CG-AA--A-----cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACG-GC-ATAA-----TT--T--TCAC--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGTTT---C--AA--AT-A--TCAGAA--A-----TGTG-TATGGTTAA-GGATC------CG-----TACCG----CCACCAATCC-CCAAC-CCCATCCACTTTACATTCTTCCTGACGT----TTTGGCTTGGCA-----TG---CATA-------T-------GGT-------T-TAAAGCTCATT------TGAAGCTC--AT-TTTT-------TTTTA----------TT---TTCTTAATAAAA-CGTTTAAATGTCACAAA-ACT-A-----------------TT-------GGAGTAAATAACGAT---CA--------TT---TCCCCATTATTG----TT--A-----CCAAATTGCAG-------------AAT-ACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCCAAAC---TGAAGTA----AATGAAA-ACCAT-A-----TC--TGTTATT--C-T--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGTTT---T--AA--T--A--TCA-TT--T-----TTTT-CCGGGGCAGAGG----------G-----AAGTG----TT-------C-CTCAC-T--A---GCTCTCCCTA-------GCGT----TTTAACTA-GCAG----AG---CATGGGGTTCTT-------GGT-------T-TAAAATCC----------GA----------TTCTAAATACATC----------------------TGATA-----GTT-----GTTA-AAG-A-T-A-----------------TT-------GAAGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCT-CC--TAAAGCTAACTAGAATAGAGCATTTCG-TTGT--T--AGAATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A--CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTTTTTTCAGTGAAAA-TGC-A--AAAA-TACATCATTAGGTTTTTAAGATCGCA---AA-C--GTTTCCATG-----------TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTTCAAAGAT-ACAAC-A-T-T-----------------TT-------GTAGTAAATAAAAGT---CAT------ATT---TATCC-T-ATAAAT--TC--A-----ATAGACCGTAGCATTTTG-TGTTTAAG-ATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGGT---------CCACC--AAT-GTTC--------AGGTTGA------GGTATGGGTAGCATA------TACCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTT---TT-AA--TA-GCTTT------------TTTT-TCAGGGTTG-GATGT------GGAGGGATGCCG----CCACTAG--C-TCAAT-CCAAC--ACACTCTTTC-------ACGT----TTTAACTT-GCAG----TG---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCC-ACCCCAAT-GTTC--------AGGTTGAGGGTGGGGT-GGGG-AGCATA------TATTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacCCACC-------ACGTACATTTTGGCTC-CTGG----TG---CATG-------CGGTAGCGGGT-------T-TAAAACAAGGT------G--AACT----T-TTTTTAGTa
gi|26 : attataatttttttattataccaAAT-GCATGATTTGGCACTAAAAAAGCAAAAACAA-----AAAGG-TACCCCCAAAACCA-CCCTAAAATTATATT--TTTCAATTTtagtcttt
gi|27 : ATGCAGCATTT-G-TTTT--TTTAAGATATAAATA-----TTTTCCctga
gi|3 : -TA-AATTTT-TTCCAGA-TGGCCCTC-ATT-ACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNNN----------N-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNN--NN-NNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NATT-TTC-CACTGA-CGGCAACGAATG-----T-------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT---TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--TTTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : tctgCAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TTCATATGGGAGACTCCCT---CCGCCCCctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T--TTTT--CTT--T-AAA---ACT------AATG-CAGCATTTGGT-TTT---T--AA--AATA--TTA-AA--C-----TTTTTCCGGAGTAG-TCCCC------TG-----TACT----------AG--G---------GA---ACCC-------------ACAT----TTTG-CTC-CAAT----TG---CATG-------A-------GGTACCGAGTT-TAAAACTCA---------GAAGTTT--GGGTTTTTAAAACATCTTATATT------TT---TTCTTAA---AA-CATTTAAATGTCACAAA-A-T-A-----------------TTGGTCCCAGGAGTAAATAACAAC---CAT------GTT---TTATC-ATAAAATC--TC--C-----CTATGGTGCAGCATTTGA-TATTTAAG-ATATCAAAATaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-AC-AT-C-----TG--T--TATT--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGTTT---TTTAA--TA----TCG-TTTTA-----TTTT-ACAGGGCAG-GGTTTGGGGTGCA-----TGCCG----CCACTAG--C-TCAAT-CCAAC--ACTCTTCATC-------ATGT----TTTAACTC-GCAG----TG---CATG-------T-------GGT-------T-TTGG----GTT------TAAAATCC--GG-TTCTTAATACATCTGAT-gaattaaaaaacatc
gi|4 : catT----------T-CCT-CCCCTTTAATTAGCTAGAATAGAGCATTT-G-GTCT--GT-AGAATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A--C-ACCACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTTTTTTCTCT----------A--AAAA-TACAGCATAAGGTTATAAAGATCAGA---AA-AATG--TCCAGG-----------TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAAC---TGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAAT-TCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAAGACTC-A-------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCAC----------T-TCC-CTC-TAAAACTTACTAGAATGAAGAATTT-A-CTTA--TT-AAGATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A--T-TCC-C-CTGA-GGGCAACGAGTG-----TCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtCAAC--ATTCTCCCTG-------ACGT----TT-AACTC-GCAG----AG---CATG-------A-------GGT-------TCTGG-----GTT------TGAGATCC--GG-TTCTTAATACATGTGAT------------------------AG-CTGTTAAAACTAGCAAA-----------------------------------GTAAATAGCAAC---CA--------TT---CCCCC-TTTTAA----CCA-A-----CTAGAATAGTGCATTTGG-T-TTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : cTCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAAC---CAACTAGAA-TAGTGCATTTGGTTTTTAGAAT---ATAAAA-A--A--TCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCAT----------T-CC--CCCTTTTAACCAACTAGAATAGTGCATTT-G-GTTT--TT-AGAATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A--C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTTTTTGCTTTAAAACTTGC-A--AAAA-TACAGCATAACGTTTTTAAGATCACA---AA-A--GTTTCCAGG-----------AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAAC---TGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAAT-TCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCC-CGTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT------------------------------------AACTAACTAGAATGAAGTACTT-G-CTTA--TT-AAGATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG---------------GGT-------T-TAAAACCCATG------GGAAGTTTTGAT-TATTTAA-ACATTCTAT-TT------TT---TTCTT--T-------CTTAAAAGTCACAAA-A-T-A-----------------TTGGTCCCAGGAGTAA--AACAAC---CAT------GTTA--TCA----TAAAA----TCTTC-----TTATAATGCAGCATTTGG-TATATAAA-ATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAAT-GCAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---ACAACCC-ACT-CATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGG-GGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAATAGAAAATCAACTAAACATCTGGAATA----AATGACA-AC-AT-A-----TA--T--TTTT--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGTTT---G--AA--AT-A--TCA-AA--A-----CTTT-CCAGTATAA-GACCC------CG-----TACTG----CCACCAG--C-CTTCT-TCAC---ACTCatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAA-TGTCTGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCT-------GGAATAAATGACAACATATAT------TTT---TC------ATAAAAACTC--C-----GTAGAATGCAGCATTTGT-TGTTTGAA-ATATCAAAACTTTCCAGTATAAG-----------ACC-CC-GTACTG---C-CA----------------------CCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaataAA---AGTCTCCCTC-------ACAT----TTTGGCTC-ACAGAACCTGAGTCACC-------G-------GAT-------T-TGAAACCTGTTGACGCCGGCGGTTT--GC-TTTTTAATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAA-TATTCAAAAAACACAAA-A-TGA--------------------------GTAGTAAATAACAAC---CATAAATTGTTTGTATCCCC-CAAAAAAC--TC--A-----CAATAATGCAGCTTTTGT-TGTTTAAG-ATATAAAAA
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAAT---------G------A---GTAGTA----AATAACA-ACCAT-AAATTGTT--TG-TATC--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTG-TT---T--AA--GATA--TAA-AA--AAATGTCTCT-CT---GTGG-GA-CC------CA-----TACTC----CTACCAG--C-aatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCATAAATTGTTTGTATCC-CCCAAAAAACTCACAATAATGCAGCTTTT-G-TTGT--TT-AAGATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA--T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagta---------ATCAAACATCTGGAGTA----ATTGACA-ACAAT-G-----TT--T--TA-T--CCT--G-AGA---ACTAACCAAGATG-CAGCATTTGA--TTT---T--AA--GATA--TAA-AA--A-----TGTT-CCGGTGGA------C------CA-----TACCC----CCGCCAG--CGACAACATCA------TCTC--TC-------ACAT----TCT--CTC--CA-----TC---TAAA-------T-------GG-----------GAAACCCGGA------GGAGA----------TTTAATA-AT-----------------------------AA-CGTTTAA-----ACAAA-A-T-A-----------------TT-------GATGTAAATTACGAC---TAT------TTT---TTTC----------------------CTAAAATTCAATAT---G-A-TATAAG-ATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333333 22222222 444444444444 111111 11111 11111111111 1 111111 2222222222222222222222 111111 1111111111111111 11111 2222222222222222222222 11111 333333333333333 1111111 333333333333333333333333 44444444444444444444444444444 44444444444444444444444444444444444 66666666666666666666666666666666666666 222222222222 1 0000000000000000000000000000000000000000000000000000000000000 555555555555555555 1 3333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1111 44444444444444 22222 11111 1 2222 1111111111 1111111 111 11 22222222222222222222222 22222222222222222222222222 111111111 1 1 33333333333333 6666666 1 11111
lowQualScore : 88 555 222222222 5 3 88 8 99999999 999999999999 8 999999 22222 4 1 1 111 5 5 77777777777 3 7777 3 3 3 77777 44 3 111111 0 5555 7777 0 2 4 888888 4444444444444444444444 3 6 000000 8888888888888888 11111 2 55 8888888888888888888888 3 1 1 77 11111 555 444444444444444 0000000 3 0 777777777777777777777777 0 55555555555555555555555555555 3 1 3 333 3 44444444444444444444444444444444444 555 77777777777777777777777777777777777777 1 1 1 4 66 5 777777777777 1 6 0000000000000000000000000000000000000000000000000000000000000 7 1 3 55 1 000000000000000000 8 0 5555555 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 0 999999 0 0 1 0 5 1 4 0 3 11 1 3 1 1 9999 8 8 11111111111111 1 1 11 4 8 44 00000 22222 0 1 0 3 55 8 0 88 1111 3 99999 88 2222222222 4444444 444 8 99 8 2 3 3 88888888888888888888888 1 1 55 6666 4 0 33333333333333333333333333 5 66 0 1 2 111111111 0 5 0 8 33333333333333 0 8 0 1 5 2222222 1 3 44 1 5 6 0 88888 1
lowQualScore : .. ... ......... . . .. . ........ ............ . ...... ..... . . . ... . . ........... . .... . . . ..... .. . ...... . .... .... . . . ...... ...................... . . ...... ................ ..... . .. ...................... . . . .. ..... ... ............... ....... . . ........................ . ............................. . . . ... . ................................... ... ...................................... . . . . .. . ............ . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . . . . .. . . . . .... . . .............. . . .. . . .. ..... ..... . . . . .. . . .. .... . ..... .. .......... ....... ... . .. . . . . ....................... . . .. .... . . .......................... . .. . . . ......... . . . . .............. . . . . . ....... . . .. . . . . ..... .
lowQualScore : 00 555 555555555 0 2 22 0 00000000 888888888888 0 222222 99999 3 0 7 333 0 0 99999999999 5 7777 3 3 3 77777 22 1 333333 2 2222 2222 7 9 7 777777 6666666666666666666666 3 4 555555 8888888888888888 44444 0 00 0000000000000000000000 8 6 6 22 22222 444 333333333333333 8888888 3 5 000000000000000000000000 5 22222222222222222222222222222 6 2 3 888 3 22222222222222222222222222222222222 888 99999999999999999999999999999999999999 0 5 2 9 44 0 999999999999 4 6 8888888888888888888888888888888888888888888888888888888888888 3 0 2 88 2 000000000000000000 8 0 5555555 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 0 7 2 8 0 6 8 88 0 2 0 0 6666 0 0 00000000000000 0 4 88 6 0 44 00000 00000 6 0 0 0 88 8 2 22 2222 5 44444 88 2222222222 6666666 000 0 00 0 2 1 0 77777777777777777777777 0 0 00 1111 0 3 88888888888888888888888888 0 66 2 5 2 444444444 0 0 0 8 77777777777777 6 0 8 4 0 8888888 0 8 22 0 0 5 2 55555 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAA-T---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--A---GGACCC------CG-----TACCG----CCACCAG--C-CCNAC-TC----------AA-ACTCTCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGC-AA--AAAATACAGCATTAGGTTTTTAAGATCACAAA-AGTTT-----CCAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTTT--TT-AAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTACC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAA-T---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--A---GGACCC------CG-----TACCG----CCACCAG--C-CCNAC-TC----------AA-ACTCTCCNTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGC-AA--AAAATACAGCATTAGGTTTTTAAGATCGCAAA-AGTTT-----CCAG--G--TACCCCAACCAGCAGNGGACAAC-CACTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TATC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTNT--TT-AAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGCCA-TCCTACTGTGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTC--------AGGTTGCCGG-G---T-CGGG-AGCATA------TACTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT-----------------------AACATCTGGAGTA----ACTGACA-AT-AT-A-----TTAGT-TAA-T--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGTTT---T--AA--TA-A--TCAAT--A-----TTTT-CCGGGAT--A---AGACCC------TG-----TAACG----CCACCAA--C-CCTAC-TC----------AA-ACTCTGCATCACTTTTTGGCTC-TCA-----TA---CATG-------T-------GGT-------T-TAAGTCCCATTG------GAAGCTC--AT-TCTTTAATACATCTTAT-TT------CT---TTCTTAATAAAA-CGTTTACATGTCACAAGTC-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTC---CCCCC-TTATTA----TT--A-----CCAAATTGCAGTATTTGAT-TTTAAGATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAG-TTAAAAAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTTTTTAAATTTGCAAA--AAAATATCGCATTAGGTTT--------ACAAATAG--T-----CCAG--G--TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAACTGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTTCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAG-GTCCCAATTTCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCAT------TTC---TCCCAT---AAAACTTATTACAATGCAGTATTTGCTTATAATT-AAGATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A---T-TCC-C-CTGA-GGGAAACGGGTGCCATTCCTACTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--AAAAT-------TAAAGGGAAGCACCAAAAACACTCTCAGAATTAAATTAAT--TTCATTT
gi|11 : gcACGCTTTGGCTC-CTAG----TG---CATG-------TGGTAACAGGT-------T-TAAAACAAGGTG--------AACT----T-TTTTAAATAAATCT--T-TT------GT---TTCTGAA-AAAA-CTTTTAAAAGTCACAAA-A-T-A------------------T-------GG-------AATAACCAACAAT---CATAC----TTT---TATCC-TTAAAAC---TC--G-----CTAGACAGCAGCATTTGGAGTTTAAGATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaccaccacgtTGGAATAACCAACAATCATACTT--TTA---TCCT-T---AAAACTCGCTAGACAGCAGCATTTG-GAGT--TT-AAGATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A---T-TCC-CACTAACGGG--ACGAGAGAAA-CCCCACCCCATTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCC-TAGGGGAGACCTCccctcca
gi|13 : ctgctaggaaGCAAA------TACTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAA-T---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TTA-C--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGTTT---T--AA--AT-A--TAAAA--A------AGT-CCAGGTT--A---ACACCC------CG-----TATCGGATCCCAC-----C-CCT---TC----------AC-ACTCTTCCTTACATTTTGGCTT-GTCA----TT---CATG-------T-------GGT-------T-TAAAACCCATTT------TAAGCTC--A---TTTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAA-T---------ATCAAACGTCTGATTTA----CAT--CA----AT-A-----TT--T-TTA-T--CCT----AAA---ACTCGCTTAAATA-AATAATTTGGTATTTAAAT--AC--AA-A--ACAAA-----------T-CCGGAGG--A---GGCCCT------CG-----TATCG----CCACCAA--C-CCCA
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATTTAAAAGTC----A-A-T-A-----------------TTGGTCCCAGG-------AGTAAATAACAAA---CATAA----TTTA--TC------ATGA-----C--ATCTTCCTATAATGCAGTATTTTGTATTTAAGATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-tcc
gi|16 : aacttaTCAC-AAAA-T---------ATTGGTT-CCTGGAGTAAAATAATGACA-ACAAC-A-----TT--T-TAT------T--ATAAA---TCTTCTTATAATG-CAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttAAACCTTTGAAGTT----AATGGAA-AC--T-A-----TT--T-TCT-TATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGTTT---T--AAATTATA--TTAAA--A-----TGTC-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTC--------AAGTTG--------GTA--GT-AGCATA------TTCTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCAC-AAAAAT---------AACAAACATCT----T-----ATTTACATTC-AT-A-----TT--T-TTA-T--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGTAT---A--AA--TA-----CGAA--A-----cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAA-T---------ACCAAACATCTGGAGTA----AATGACG-GC-ATAA-----TT--T-TCA-C--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGTTT---C--AA--AT-A--TCAGA--A-----ATGT-GTATGGTTAA---GGA-TC------CG-----TACCG----CCACCAATCC-CCAAC-CCCATCCACTTTAC-ATTCTTCCTGACGTTTTGGCTTGGCA-----TG---CATA-------T-------GGT-------T-TAAAGCTCATTT------GAAGCTC--AT-TTTT-------TTTTA----------TT---TTCTTAATAAAA-CGTTTAAATGTCACAAA-ACT-A-----------------TT-------GG-------AGTAAATAACGAT---CA--------TT---TCCCCATTATTG----TT--A-----CCAAATTGCAG------------AATACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCCAAAC---TGAAGTA----AATGAAA-ACCAT-A-----TC--T-GTTAT--TCT--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGTTT---T--AA--T--A--TCATT--T-----TTTT-CCGGGGC--AGAGGGA---------AG-----TGTT--------------C-CTCAC-T------------A-GCTCTCCCTAGCGTTTTAACTA-GCAG----AG---CATGGGGTTCTT-------GGT-------T-TAAAATCC----------GA----------TTCTAAATACATC----------------------TGATA-----GTT-----GTTA-AAG-A-T-A-----------------TT-------GA-------AGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCC-T---AAAGCTAACTAGAATAGAGCATTTC-GTTG--TT-AGAATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A---CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTTTTTTCAGTGAAAA-TGC--A--AAAATACATCATTAGGTTTTTAAGATCGCAAA-CGTTT-----CCAT--G--TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTTCAAAGAT-ACAAC-A-T-T-----------------TT-------GT-------AGTAAATAAAAGT---CAT------ATT---TATCC-T-ATAAAT--TC--A-----ATAGACCGTAGCATTTTGTGTTTAAGATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGG---------TCCA--CCAAT-GTTC--------AGGTTGA------GGTATGGGTAGCATA------TACCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTT---TT-AA--TA-GCTTT-----------TTTT-TCAGGGT--T---GGATGT------GGAGGGATGCCG----CCACTAG--C-TCAAT-CC----------AACACACTCTTTCACGTTTTAACTT-GCAG----TG---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCC-ACCCCAAT-GTTC--------AGGTTGAGGGTGGGGT-GGGG-AGCATA------TATTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacACATTTTGGCTC-CTGG----TG---CATG-------CGGTAGCGGGT-------T-TAAAACAAGGTG--------AACT----T-TTTTTAGTa
gi|26 : attataatttttttattataccaccaccacgtAAT-GCATGATTTGGCACTAAAAAAGCAAAAACAA------AAAGG-TACCCCCAAAACCA-CCCTAAAATTATATT--T--TTCAATTTtagtcttt
gi|27 : ATGCAGCATTTG-TTTT--TTTAAGATATAAATA-----TTTTCCctga
gi|3 : -TA-AATTTT-TTCCAGA-TGG-CCCTC-ATTACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNNN------NNN---NNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNN-NNNN--NN-NNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NNATT-TTC-CACTGA-CGGCAACGAATGT-------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT----TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--T--TTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : tctgCAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TT-CATATGGGAGACTCCCT---CCGCCCC---AATAGTATC--TGGTACACTTTctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T-TTT-T--CTT--T-AAA---ACT------AATG-CAGCATTTGGT-TTT---T--AA--AATA--TTAAA--C-----TTTTTCCGGAGT--A---GTCCCC------TG-----TACT----------AG--G-------------------GA-ACCC------ACATTTTG-CTC-CAAT----TG---CATG-------A-------GGTACCGAGTT-TAAAACTCA---------GAAGTTT--GGGTTTTTAAAACATCTTATATT------TT---TTCTTAA---AA-CATTTAAATGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAATAACAAC---CAT------GTT---TTATC-ATAAAA----TCTCC-----CTATGGTGCAGCATTTGATATTTAAGATATCAAAATccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-AC-AT-C-----TG--T-TAT-T--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGTTT---TTTAA--TA----TCGTTTTA-----TTTT-ACAGGGC--A---GGGTTTGGGGTGCA-----TGCCG----CCACTAG--C-TCAAT-CC----------AACACTCTTCATCATGTTTTAACTC-GCAG----TG---CATG-------T-------GGT-------T-TTGG----GTTT------AAAATCC--GG-TTCTTAATACATCTGAT-gaattaaaaaacatc
gi|4 : catT------TCC---TCCCCT---TTAATTAGCTAGAATAGAGCATTTG-GTCT--GT-AGAATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A---C-ACCACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTTTTTTCTCT-----------A--AAAATACAGCATAAGGTTATAAAGATCAGAAA-AATGT-----CCAG--G--TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAACTGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATTCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAA-GACTC-A------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCAC------TTC---CCTC-T---AAAACTTACTAGAATGAAGAATTTA-CTTA--TT-AAGATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A---T-TCC-C-CTGA-GGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtC----------AACATTCTCCCTGACGTTT-AACTC-GCAG----AG---CATG-------A-------GGT-------TCTGG-----GTTT------GAGATCC--GG-TTCTTAATACATGTGAT------------------------AG-CTGTTAAAACTAGCAAA------------------------------------------GTAAATAGCAAC---CAT------TC-----CCCC-TTTTAA----CC--AA----CTAGAATAGTGCATTTGGTTTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : cTCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAAC---C-AACTAGAATAGTGCATTTGGTTTTTAGAATATAAAA-AATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCAT------TCC---CCCT-T---TTAACCAACTAGAATAGTGCATTTG-GTTT--TT-AGAATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A---C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTTTTTGCTTTAAAACTTGC--A--AAAATACAGCATAACGTTTTTAAGATCACAAA-AGTTT-----CCAG--G--AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAACTGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATTCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCCC-GTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT------------------------------------AACTAACTAGAATGAAGTACTTG-CTTA--TT-AAGATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG---------------GGT-------T-TAAAACCCATGG------GAAGTTTTGAT-TATTTAA-ACATTCTAT-TT------TT---TTCTT--T-------CTTAAAAGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAA--ACAAC---CAT------GTTA--TCA----TAAAA----TCTTC-----TTATAATGCAGCATTTGGTATATAAAATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATGCAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---AC-AACCC-ACTCATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGG-GGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAA-TAGAAAATCAACTAAACATCTGGAATA----AATGACA-AC-AT-A-----TA--T-TTT-T--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGTTT---G--AA--AT-A--TCAAA--A-----CTTT-CCAGTAT--A---AGACCC------CG-----TACTG----CCACCAG--C-CTTCT-TC----------AC-ACTCatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAA-TGTCTGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCT-------GG-------AATAAATGACAACATATAT------TTT---TC------ATAAAAACTC--C-----GTAGAATGCAGCATTTGTTGTTTGAAATATCAAAACTTTCCAGTATAAG-----------ACC-CC-GTACTG---C-CA----------------------CCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaata----------AA-AGTCTCCCTCACATTTTGGCTC-ACAGAACCTGAGTCACC-------G-------GAT-------T-TGAAACCTGTTGACGCCGGCGGTTT--GC-TTTTTAATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAA-TATTCAAAAAACACAAA-A-TGA--------------------------GT-------AGTAAATAACAAC---CATAAATTGTTTGTATCCCC-CAAAAAAC--TC--A-----CAATAATGCAGCTTTTGTTGTTTAAGATATAAAAA
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAA-T---------G------A---GTAGTA----AATAACA-ACCAT-AAATTGTT--TGTAT-C--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTG-TT---T--AA--GATA--TAAAA--AAATGTCTCT-CT---GT--G---GGA-CC------CA-----TACTC----CTACCAG--C-aatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCATAAATTGTTTGTATCCC-CCAAAAAACTCACAATAATGCAGCTTTTG-TTGT--TT-AAGATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA---T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagta---------ATCAAACATCTGGAGTA----ATTGACA-ACAAT-G-----TT--T-TA--T--CCT--G-AGA---ACTAACCAAGATG-CAGCATTTG--ATTT---T--AA--GATA--TAAAA--A-----TGTT-CC--GGT------GGA--C------CA-----TACCC----CCGCCAG--CGACAACATC----------A----TCTC--TCACATTCT--CTC--CA-----TC---TAAA-------T-------GG-----------GAAACCCGGAG------GAGA----------TTTAATA-AT-----------------------------AA-CGTTTAA-----ACAAA-A-T-A-----------------TT-------GA-------TGTAAATTACGAC---TAT------TTT---TTTC----------------------CTAAAATTCA--ATATGATA--TAAGATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 22 22222222 444444444444 111111 11111 1 11111111111 1 111111 2222222222222222222222 111111 1111111111111111 11111 222222222222222222 11111 222222222222222 2222222 333333333333333333333333 44444444444444444444444444444 44444444444444444444444444444444444 66666666666666666666666666666666666666 222222222222 1 0000000000000000000000000000000000000000000000000000000000000 555555555555555555 1 3333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1111 3333333333333 222222 11111 1 1111 1111111111 1111111 111 11 22222222222222222222222 22222222222222222222222222 111111111 1 1 555555555555555 6666666 1 11111
lowQualScore : 88 555 22 111111 5 33 8 99999999 999999999999 8 999999 22222 4 1 1 111 0 77777777777 3 7777 3 3 3 77777 44 3 111111 0 5555 7777 0 2 4 888888 4444444444444444444444 3 6 000000 8888888888888888 11111 2 55 0 999999999999999999 3 3 1 1 77 11111 555 333333333333333 1111111 3 0 777777777777777777777777 0 55555555555555555555555555555 3 1 3 333 3 44444444444444444444444444444444444 555 77777777777777777777777777777777777777 1 1 1 4 66 5 777777777777 1 6 0000000000000000000000000000000000000000000000000000000000000 7 1 3 55 1 000000000000000000 8 0 5555555 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 0 999999 0 0 1 0 5 1 4 0 8888 3 1 1 9999 8 8 3333333333333 8 1 1 11 5 8 5 333333 22222 0 1 0 1 55 8 0 88 7777 1 99999 88 2222222222 4444444 444 8 99 8 2 3 3 88888888888888888888888 1 1 55 9999 0 33333333333333333333333333 5 66 0 1 2 111111111 0 5 0 8 000000000000000 0 8 0 1 5 2222222 1 3 44 1 5 6 0 88888 1
lowQualScore : .. ... .. ...... . .. . ........ ............ . ...... ..... . . . ... . ........... . .... . . . ..... .. . ...... . .... .... . . . ...... ...................... . . ...... ................ ..... . .. . .................. . . . . .. ..... ... ............... ....... . . ........................ . ............................. . . . ... . ................................... ... ...................................... . . . . .. . ............ . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . . . .... . . . .... . . ............. . . . .. . . . ...... ..... . . . . .. . . .. .... . ..... .. .......... ....... ... . .. . . . . ....................... . . .. .... . .......................... . .. . . . ......... . . . . ............... . . . . . ....... . . .. . . . . ..... .
lowQualScore : 00 555 88 222222 0 22 0 00000000 888888888888 0 222222 99999 3 0 7 333 0 99999999999 5 7777 3 3 3 77777 22 1 333333 2 2222 2222 7 9 7 777777 6666666666666666666666 3 4 555555 8888888888888888 44444 0 00 7 222222222222222222 6 6 6 6 22 22222 444 555555555555555 7777777 3 5 000000000000000000000000 5 22222222222222222222222222222 6 2 3 888 3 22222222222222222222222222222222222 888 99999999999999999999999999999999999999 0 5 2 9 44 0 999999999999 4 6 8888888888888888888888888888888888888888888888888888888888888 3 0 2 88 2 000000000000000000 8 0 5555555 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 0 7 2 8 0 6 4444 2 0 0 6666 0 0 0000000000000 0 0 4 88 0 0 6 000000 00000 6 0 0 0 88 8 2 22 0000 0 44444 88 2222222222 6666666 000 0 00 0 2 1 0 77777777777777777777777 0 0 00 1111 3 88888888888888888888888888 0 66 2 5 2 444444444 0 0 0 8 000000000000000 6 0 8 4 0 8888888 0 8 22 0 0 5 2 55555 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--A---GGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--A---GGACCC------CG-----TACCG----CCACCAG--CCCNACTC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTC--------AGGTTGCCGG-G---T-CGGG-AGCATA------TACTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT----------------------AACATCTGGAGTA----ACTGACA-AT-AT-A-----TTAGT-TAA-T--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGTTT---T--AA--TA-A--TCAAT--A-----TTTT-CCGGGAT--A---AGACCC------TG-----TAACG----CCACCAA--CCCTACTC----------AA-AC-TC-TGCATCACTTTTTGGCTC-TCA-----TA---CATG-------T-------GGT-------T-TAAGTCCCATTG------GAAGCTC--AT-TCTTTAATACATCTTAT-TT------CT---TTCTTAATAAAA-CGTTTACATGTCACAAGTC-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTC---CCCCC-TTATTA----TT--A-----CCAAATTGCAGTATTTGAT-TTTAAGATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAGTTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTTTTTAAATTTGCAA--AAAAATATCGCATTAGGTTT--------ACAAATAGT--C------CAG--G--TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAACTGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTTCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAG-GTCCCAATTTCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCAT------TTC---TCCCAT---AAAACTTATTACAATGCAGTATTTG-CTTATAATTAAGATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A---T-TCC-C-CTGA-GGGAAACGGGTGCCATTCCTA-CTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--AAAAT-------TAAAGGGAAGCACCAAAAACACTCTCAGAATTAAATTAAT--TTCATTT
gi|11 : gcACGCTTTGGCTC-CTAG----TG---CATG-------T-------GGTAACAGGTT-TAAAACAAGGTG------AA--CT----T-TTTTAAATAAATCTT---TT------GT---TTCTGAA-AAAA-CTTTTAAAAGTCACAAA-A-T-A------------------T-------GG-------AATAACCAACAAT---CATAC----TTT---TATCC-TTAAAAC---TC--G-----CTAGACAGCAGCATTTGGAGTTTAAGATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaccaccacgtTGGAATAACCAACAATCATACTT--TTA---TCCT-T---AAAACTCGCTAGACAGCAGCATTTG-GAG-T--TTAAGATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A---T-TCC-CACTAACGGG--ACGAGAGAAA-CCCCACCC-CATTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCC-TAGGGGAGACCTCccctcca
gi|13 : ctgctaggaaGCAAA------TACTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TTA-C--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGTTT---T--AA--AT-A--TAAAA--A------AGT-CCAGGTT--A---ACACCC------CG-----TATCGGATCCCAC-----CCCT--TC----------AC-AC-TC-TTCCTTACATTTTGGCTT-GTCA----TT---CATG-------T-------GGT-------T-TAAAACCCATTT------TAAGCTC--A---TTTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAAT---------ATCAAACGTCTGATTTA----CAT--CA----AT-A-----TT--T-TTA-T--CCT----AAA---ACTCGCTTAAATA-AATAATTTGGTATTTAAAT--AC--AA-A--ACAAA-----------T-CCGGAGG--A---GGCCCT------CG-----TATCG----CCACCAA--CCCCA
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATTTAAAAGTC----A-A-T-A-----------------TTGGTCCCAGG-------AGTAAATAACAAA---CATAA----TTTA--TC------ATGA-----C--ATCTTCCTATAATGCAGTATTTTGTATTTAAGATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-tcc
gi|16 : aacttaTCAC-AAAAT---------ATTGGTT-CCTGGAGTAAAATAATGACA-ACAAC-A-----TT--T-TAT------T--ATAAA---TCTTCTTATAATG-CAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttAAACCTTTGAAGTT----AATGGAA-AC--T-A-----TT--T-TCT-TATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGTTT---T--AAATTATA--TTAAA--A-----TGTC-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTC--------AAGTTG--------GTA--GT-AGCATA------TTCTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCACAAAAAT---------AACAAACATCT----T-----ATTTACATTC-AT-A-----TT--T-TTA-T--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGTAT---A--AA--TA-----CGAA--A-----cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACG-GC-ATAA-----TT--T-TCA-C--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGTTT---C--AA--AT-A--TCAGA--A-----ATGT-GTATGGTTAA---GGA-TC------CG-----TACCG----CCACCAATCCCCAACCCCATCCACTTTAC-AT-TC-TTCCTGACGTTTTGGCTTGGCA-----TG---CATA-------T-------GGT-------T-TAAAGCTCATTT------GAAGCTC--AT-TTTT-------TTTTA----------TT---TTCTTAATAAAA-CGTTTAAATGTCACAAA-ACT-A-----------------TT-------GG-------AGTAAATAACGAT---CA--------TT---TCCCCATTATTG----TT--A-----CCAAATTGCAG------------AATACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCCAAAC---TGAAGTA----AATGAAA-ACCAT-A-----TC--T-GTTAT--TCT--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGTTT---T--AA--T--A--TCATT--T-----TTTT-CCGGGGC--AGAGGGA---------AG-----TGTT--------------CCTCACT------------A-GC-TC-TCCCTAGCGTTTTAACTA-GCAG----AG---CATGGGGTTCTT-------GGT-------T-TAAAATCC----------GA----------TTCTAAATACATC----------------------TGATA-----GTT-----GTTA-AAG-A-T-A-----------------TT-------GA-------AGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCC-T---AAAGCTAACTAGAATAGAGCATTTC-GTT-G--TTAGAATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A---CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTTTTTTCAGTGAAAA-TGC-A--AAAA-TACATCATTAGGTTTTTAAGATCGCAAA-CGTTTC------CAT--G--TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTTCAAAGAT-ACAAC-A-T-T-----------------TT-------GT-------AGTAAATAAAAGT---CAT------ATT---TATCC-T-ATAAAT--TC--A-----ATAGACCGTAGCATTTTGTGTTTAAGATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGGT---------CCACC--AAT-GTTC--------AGGTTGA------GGTATGGGTAGCATA------TACCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTT---TT-AA--TA-GCTTT-----------TTTT-TCAGGGT--T---GGATGT------GGAGGGATGCCG----CCACTAG--CTCAATCC----------AACAC-AC-TCTTTCACGTTTTAACTT-GCAG----TG---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCC-ACCCCAAT-GTTC--------AGGTTGAGGGTGGGGT-GGGG-AGCATA------TATTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacACATTTTGGCTC-CTGG----TG---CATG-------CGGTAGCGGGT-------T-TAAAACAAGGTG--------AACT----T-TTTTTAGTa
gi|26 : attataatttttttattataccaccaccacgtAAT-GCATGATTTGGCACTAAAAAAGCAAAAACAA------AAAGG-TACCCCCAAAACCA-CCCTAAAATTATATT--T--TTCAATTTtagtcttt
gi|27 : ATGCAGCATTTGTTTT-T--TTAAGATATAAATA-----TTTTCCctga
gi|3 : ----TCTG-TA-AATTTT-TTCCAGA-TGG-CCCTC-ATTACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNNN------NNN---NNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNN-NNN-N--NNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NNATT-TTC-CACTGA-CGGCAACGAATGT--------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT----TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--T--TTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : CAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TT-CATATGGGAGACTCCCT---CCGCCCC---AATAGTATC--TGGTACACTTTctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T-TTT-T--CTT--T-AAA---ACT------AATG-CAGCATTTGGT-TTT---T--AA--AATA--TTAAA--C-----TTTTTCCGGAGT--A---GTCCCC------TG-----TACT----------AG--G-----------------GA-AC-CC-------ACATTTTG-CTC-CAAT----TG---CATG-------A-------GGTACCGAGTT-TAAAACTCA---------GAAGTTT--GGGTTTTTAAAACATCTTATATT------TT---TTCTTAA---AA-CATTTAAATGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAATAACAAC---CAT------GTT---TTATC-ATAAAA----TCTCC-----CTATGGTGCAGCATTTGATATTTAAGATATCAAAATccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-AC-AT-C-----TG--T-TAT-T--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGTTT---TTTAA--TA----TCGTTTTA-----TTTT-ACAGGGC--A---GGGTTTGGGGTGCA-----TGCCG----CCACTAG--CTCAATCC----------AACAC-TC-TTCATCATGTTTTAACTC-GCAG----TG---CATG-------T-------GGT-------T-TTGG----GTTT------AAAATCC--GG-TTCTTAATACATCTGAT-gaattaaaaaacatc
gi|4 : catT------TCC---TCCCCT---TTAATTAGCTAGAATAGAGCATTTG-GTC-T--GTAGAATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A---C-ACCACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTTTTTTCTCT----------A--AAAA-TACAGCATAAGGTTATAAAGATCAGAAA-AATGTC------CAG--G--TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAACTGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATTCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAA-GACTC-A------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCAC------TTC---CCTC-T---AAAACTTACTAGAATGAAGAATTTA-CTT-A--TTAAGATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A---T-TCC-C-CTGA-GGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtC----------AACAT-TC-TCCCTGACGTTT-AACTC-GCAG----AG---CATG-------A-------GGT-------TCTGG-----GTTT------GAGATCC--GG-TTCTTAATACATGTGAT------------------------AG-CTGTTAAAACTAGCAAA------------------------------------------GTAAATAGCAAC---CAT------TC-----CCCC-TTTTAA----CC--AA----CTAGAATAGTGCATTTGGTTTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : cTCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAAC---CAACTAGAA-TAGTGCATTTGGTTTTTAGAAT-ATAAA-AAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCAT------TCC---CCCT-T---TTAACCAACTAGAATAGTGCATTTG-GTT-T--TTAGAATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A---C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTTTTTGCTTTAAAACTTGC-A--AAAA-TACAGCATAACGTTTTTAAGATCACAAA-AGTTTC------CAG--G--AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAACTGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATTCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCCC-GTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT------------------------------------AACTAACTAGAATGAAGTACTTG-CTT-A--TTAAGATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG---------------GGT-------T-TAAAACCCATGG------GAAGTTTTGAT-TATTTAA-ACATTCTAT-TT------TT---TTCTT--T-------CTTAAAAGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAA--ACAAC---CAT------GTTA--TCA----TAAAA----TCTTC-----TTATAATGCAGCATTTGGTATATAAAATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATGCAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---AC-AACCC-ACTCATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGG-GGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAATAGAAAATCAACTAAACATCTGGAATA----AATGACA-AC-AT-A-----TA--T-TTT-T--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGTTT---G--AA--AT-A--TCAAA--A-----CTTT-CCAGTAT--A---AGACCC------CG-----TACTG----CCACCAG--CCTTCTTC----------AC-AC-TC-atctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAA-TGTCTGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCT-------GG-------AATAAATGACAACATATAT------TTT---TC------ATAAAAACTC--C-----GTAGAATGCAGCATTTGTTGTTTGAAATATCAAAACTTTCCAGTATAAG-----------ACC-CC-GTACTG---C-CA----------------------CCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaata----------AA-AG-TC-TCCCTCACATTTTGGCTC-ACAGAACCTGAGTCACC-------G-------GAT-------T-TGAAACCTGTTGACGCCGGCGGTTT--GC-TTTTTAATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAA-TATTCAAAAAACACAAA-A-TGA--------------------------GT-------AGTAAATAACAAC---CATAAATTGTTTGTATCCCC-CAAAAAAC--TC--A-----CAATAATGCAGCTTTTGTTGTTTAAGATATAAAAA
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAAT---------G------A---GTAGTA----AATAACA-ACCAT-AAATTGTT--TGTAT-C--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTG-TT---T--AA--GATA--TAAAA--AAATGTCTCT-CT---GT--G---GGA-CC------CA-----TACTC----CTACCAG--Caatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCATAAATTGTTTGTATCCC-CCAAAAAACTCACAATAATGCAGCTTTTG-TTG-T--TTAAGATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA---T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagta---------ATCAAACATCTGGAGTA----ATTGACA-ACAAT-G-----TT--T-TA--T--CCT--G-AGA---ACTAACCAAGATG-CAGCATTTG--ATTT---T--AA--GATA--TAAAA--A-----TGTT-CC--GGT------GGA--C------CA-----TACCC----CCGCCAG----CGAC-------------A-ACATCATCTCTCACATTCT--CTC--CA-----TC---TAAA-------T-------GG-----------GAAACCCGGAG------GAGA----------TTTAATA-AT-----------------------------AA-CGTTTAA-----ACAAA-A-T-A-----------------TT-------GA-------TGTAAATTACGAC---TAT------TTT---TTTC----------------------CTAAAATTCA--ATATGATA--TAAGATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 22 22222222 444444444444 111111 11111 1 11111111111 1 111111 2222222222222222222222 11 1111111111111111 11111 33333333333333333333333 11111 222222222222222 2222222 333333333333333333333333 44444444444444444444444444444 44444444444444444444444444444444444 66666666666666666666666666666666666666 222222222222 1 0000000000000000000000000000000000000000000000000000000000000 555555555555555555 1 3333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1111 3333333333333 222222 11111 1 1111 1111111111 1111111 111 11 22222222222222222222222 22222222222222222222222222 111111111 1 1 555555555555555 6666666 1 11111
lowQualScore : 88 555 22 111111 5 33 8 99999999 999999999999 8 999999 22222 4 1 1 111 0 77777777777 3 7777 3 3 3 77777 44 3 111111 0 5555 7777 0 2 4 888888 4444444444444444444444 3 6 00 5555555555555555 11111 1 99999999999999999999999 3 3 1 1 77 11111 555 333333333333333 1111111 3 0 777777777777777777777777 0 55555555555555555555555555555 3 1 3 333 3 44444444444444444444444444444444444 555 77777777777777777777777777777777777777 1 1 1 4 66 5 777777777777 1 6 0000000000000000000000000000000000000000000000000000000000000 7 1 3 55 1 000000000000000000 8 0 5555555 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 0 999999 0 0 1 0 5 1 4 0 8888 3 1 1 9999 8 8 3333333333333 8 1 1 11 5 8 5 333333 22222 0 1 0 1 55 8 0 88 7777 1 99999 88 2222222222 4444444 444 8 99 8 2 3 3 88888888888888888888888 1 1 55 9999 0 33333333333333333333333333 5 66 0 1 2 111111111 0 5 0 8 000000000000000 0 8 0 1 5 2222222 1 3 44 1 5 6 0 88888 1
lowQualScore : .. ... .. ...... . .. . ........ ............ . ...... ..... . . . ... . ........... . .... . . . ..... .. . ...... . .... .... . . . ...... ...................... . . .. ................ ..... . ....................... . . . . .. ..... ... ............... ....... . . ........................ . ............................. . . . ... . ................................... ... ...................................... . . . . .. . ............ . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . . . .... . . . .... . . ............. . . . .. . . . ...... ..... . . . . .. . . .. .... . ..... .. .......... ....... ... . .. . . . . ....................... . . .. .... . .......................... . .. . . . ......... . . . . ............... . . . . . ....... . . .. . . . . ..... .
lowQualScore : 00 555 88 222222 0 22 0 00000000 888888888888 0 222222 99999 3 0 7 333 0 99999999999 5 7777 3 3 3 77777 22 1 333333 2 2222 2222 7 9 7 777777 6666666666666666666666 3 4 00 7777777777777777 44444 2 22222222222222222222222 6 6 6 6 22 22222 444 555555555555555 7777777 3 5 000000000000000000000000 5 22222222222222222222222222222 6 2 3 888 3 22222222222222222222222222222222222 888 99999999999999999999999999999999999999 0 5 2 9 44 0 999999999999 4 6 8888888888888888888888888888888888888888888888888888888888888 3 0 2 88 2 000000000000000000 8 0 5555555 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 0 7 2 8 0 6 4444 2 0 0 6666 0 0 0000000000000 0 0 4 88 0 0 6 000000 00000 6 0 0 0 88 8 2 22 0000 0 44444 88 2222222222 6666666 000 0 00 0 2 1 0 77777777777777777777777 0 0 00 1111 3 88888888888888888888888888 0 66 2 5 2 444444444 0 0 0 8 000000000000000 6 0 8 4 0 8888888 0 8 22 0 0 5 2 55555 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTC--------AGGTTGCCGG-G---T-CGGG-AGCATA------TACTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT----------------------AACATCTGGAGTA----ACTGACA-AT-AT-A-----TTAGT-TAA-T--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGTTT---T--AA--TA-A--TCAAT--A-----TTTT-CCGGGAT--AAGACCC------TG-----TAACG----CCACCAA--CCCTACTC----------AA-AC-TC-TGCATCACTTTTTGGCTC-TCA-----TA---CATG-------T-------GGT-------T-TAAGTCCCATTG------GAAGCTC--AT-TCTTTAATACATCTTAT-TT------CT---TTCTTAATAAAA-CGTTTACATGTCACAAGTC-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTC---CCCCC-TTATTA----TT--A-----CCAAATTGCAGTATTTGAT-TTTAAGATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAGTTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTTTTTAAATTTGCAA--AAAAATATCGCATTAGGTTT--------ACAAATAGT--C------CAG--G--TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAACTGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTTCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAG-GTCCCAATTTCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCAT------TTC---TCCCAT---AAAACTTATTACAATGCAGTATTTG-CTTATAATTAAGATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A---T-TCC-C-CTGA-GGGAAACGGGTGCCATTCCTA-CTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--AAAAT-------TAAAGGGAAGCACCAAAAACACTCTCAGAATTAAATTAAT--TTCATTT
gi|11 : gcACGCTTTGGCTC-CTAG----TG---CATG-------T-------GGTAACAGGTT-TAAAACAAGGTG------AA--CT----T-TTTTAAATAAATCTT---TT------GT---TTCTGAA-AAAA-CTTTTAAAAGTCACAAA-A-T-A------------------T-------GG-------AATAACCAACAAT---CATAC----TTT---TATCC-TTAAAAC---TC--G-----CTAGACAGCAGCATTTGGAGTTTAAGATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaccaccacgtTGGAATAACCAACAATCATACTT--TTA---TCCT-T---AAAACTCGCTAGACAGCAGCATTTG-GAG-T--TTAAGATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A---T-TCC-CACTAACGGG--ACGAGAGAAA-CCCCACCC-CATTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCC-TAGGGGAGACCTCccctcca
gi|13 : ctgctaggaaGCAAA------TACTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TTA-C--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGTTT---T--AA--AT-A--TAAAA--A------AGT-CCAGGTT--AACACCC------CG-----TATCGGATCCCAC-----CCCT--TC----------AC-AC-TC-TTCCTTACATTTTGGCTT-GTCA----TT---CATG-------T-------GGT-------T-TAAAACCCATTT------TAAGCTC--A---TTTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAAT---------ATCAAACGTCTGATTTA----CAT--CA----AT-A-----TT--T-TTA-T--CCT----AAA---ACTCGCTTAAATA-AATAATTTGGTATTTAAAT--AC--AA-A--ACAAA-----------T-CCGGAGG--AGGCCCT------CG-----TATCG----CCACCAA--CCCCATCC----------
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATTTAAAAGTC----A-A-T-A-----------------TTGGTCCCAGG-------AGTAAATAACAAA---CATAA----TTTA--TC------ATGA-----C--ATCTTCCTATAATGCAGTATTTTGTATTTAAGATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-
gi|16 : aacttaTCAC-AAAAT---------ATTGGTT-CCTGGAGTAAAATAATGACA-ACAAC-A-----TT--T-TAT------T--ATAAA---TCTTCTTATAATG-CAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttAAACCTTTGAAGTT----AATGGAA-AC--T-A-----TT--T-TCT-TATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGTTT---T--AAATTATA--TTAAA--A-----TGTC-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTC--------AAGTTG--------GTA--GT-AGCATA------TTCTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCACAAAAAT---------AACAAACATCT----T-----ATTTACATTC-AT-A-----TT--T-TTA-T--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGTAT---A--AA--TA-----CGAA--A-----cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACG-GC-ATAA-----TT--T-TCA-C--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGTTT---C--AA--AT-A--TCAGA--A-----ATGT-GTATGGTTAAGGA-TC------CG-----TACCG----CCACCAATCCCCAACCCCATCCACTTTAC-AT-TC-TTCCTGACGTTTTGGCTTGGCA-----TG---CATA-------T-------GGT-------T-TAAAGCTCATTT------GAAGCTC--AT-TTTT-------TTTTA----------TT---TTCTTAATAAAA-CGTTTAAATGTCACAAA-ACT-A-----------------TT-------GG-------AGTAAATAACGAT---CA--------TT---TCCCCATTATTG----TT--A-----CCAAATTGCAG------------AATACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCCAAAC---TGAAGTA----AATGAAA-ACCAT-A-----TC--T-GTTAT--TCT--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGTTT---T--AA--T--A--TCATT--T-----TTTT-CCGGGGCAGAGGGAAG------TG-----TTCC-----TCACTAG------------------------C-TC-TCCCTAGCGTTTTAACTA-GCAG----AG---CATGGGGTTCTT-------GGT-------T-TAAAATCC----------GA----------TTCTAAATACATC----------------------TGATA-----GTT-----GTTA-AAG-A-T-A-----------------TT-------GA-------AGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCC-T---AAAGCTAACTAGAATAGAGCATTTC-GTT-G--TTAGAATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A---CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTTTTTTCAGTGAAAA-TGC-A--AAAA-TACATCATTAGGTTTTTAAGATCGCAAA-CGTTTC------CAT--G--TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTTCAAAGAT-ACAAC-A-T-T-----------------TT-------GT-------AGTAAATAAAAGT---CAT------ATT---TATCC-T-ATAAAT--TC--A-----ATAGACCGTAGCATTTTGTGTTTAAGATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGGT---------CCACC--AAT-GTTC--------AGGTTGA------GGTATGGGTAGCATA------TACCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTT---TT-AA--TA-GCTTT-----------TTTT-TCAGGGT--TGGATGT------GGAGGGATGCCG----CCACTAG--CTCAATCC----------AACAC-AC-TCTTTCACGTTTTAACTT-GCAG----TG---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCC-ACCCCAAT-GTTC--------AGGTTGAGGGTGGGGT-GGGG-AGCATA------TATTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacACATTTTGGCTC-CTGG----TG---CATG-------CGGTAGCGGGT-------T-TAAAACAAGGTG--------AACT----T-TTTTTAGTa
gi|26 : attataatttttttattataccaccaccacgtAAT-GCATGATTTGGCACTAAAAAAGCAAAAACAA------AAAGG-TACCCCCAAAACCA-CCCTAAAATTATATT--T--TTCAATTTtagtcttt
gi|27 : ATGCAGCATTTGTTTT-T--TTAAGATATAAATA-----TTTTCCctga
gi|3 : ----TCTG-TA-AATTTT-TTCCAGA-TGG-CCCTC-ATTACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNNN------NNN---NNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNN-NNN-N--NNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NNATT-TTC-CACTGA-CGGCAACGAATGT--------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT----TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--T--TTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : CAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TT-CATATGGGAGACTCCCT---CCGCCCC---AATAGTATC--TGGTACACTTTctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T-TTT-T--CTT--T-AAA---ACT------AATG-CAGCATTTGGT-TTT---T--AA--AATA--TTAAA--C-----TTTTTCCGGAGT--AGTCCCC------TG-----TACT----------AG--G-----------------GA-AC-CC-------ACATTTTG-CTC-CAAT----TG---CATG-------A-------GGTACCGAGTT-TAAAACTCA---------GAAGTTT--GGGTTTTTAAAACATCTTATATT------TT---TTCTTAA---AA-CATTTAAATGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAATAACAAC---CAT------GTT---TTATC-ATAAAA----TCTCC-----CTATGGTGCAGCATTTGATATTTAAGATATCAAAATccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-AC-AT-C-----TG--T-TAT-T--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGTTT---TTTAA--TA----TCGTTTTA-----TTTT-ACAGGGC--AGGGTTTGGGGTGCA-----TGCCG----CCACTAG--CTCAATCC----------AACAC-TC-TTCATCATGTTTTAACTC-GCAG----TG---CATG-------T-------GGT-------T-TTGG----GTTT------AAAATCC--GG-TTCTTAATACATCTGAT-gaattaaaaaacatc
gi|4 : catT------TCC---TCCCCT---TTAATTAGCTAGAATAGAGCATTTG-GTC-T--GTAGAATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A---C-ACCACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTTTTTTCTCT----------A--AAAA-TACAGCATAAGGTTATAAAGATCAGAAA-AATGTC------CAG--G--TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAACTGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATTCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAA-GACTC-A------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCAC------TTC---CCTC-T---AAAACTTACTAGAATGAAGAATTTA-CTT-A--TTAAGATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A---T-TCC-C-CTGA-GGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtCC----------AACAT-TC-TCCCTGACGTTT-AACTC-GCAG----AG---CATG-------A-------GGT-------TCTGG-----GTTT------GAGATCC--GG-TTCTTAATACATGTGAT------------------------AG-CTGTTAAAACTAGCAAA------------------------------------------GTAAATAGCAAC---CAT------TC-----CCCC-TTTTAA----CC--AA----CTAGAATAGTGCATTTGGTTTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : TCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAAC---CAACTAGAA-TAGTGCATTTGGTTTTTAGAAT-ATAAA-AAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCAT------TCC---CCCT-T---TTAACCAACTAGAATAGTGCATTTG-GTT-T--TTAGAATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A---C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTTTTTGCTTTAAAACTTGC-A--AAAA-TACAGCATAACGTTTTTAAGATCACAAA-AGTTTC------CAG--G--AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAACTGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATTCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCCC-GTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT------------------------------------AACTAACTAGAATGAAGTACTTG-CTT-A--TTAAGATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG---------------GGT-------T-TAAAACCCATGG------GAAGTTTTGAT-TATTTAA-ACATTCTAT-TT------TT---TTCTT--T-------CTTAAAAGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAA--ACAAC---CAT------GTTA--TCA----TAAAA----TCTTC-----TTATAATGCAGCATTTGGTATATAAAATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATGCAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---AC-AACCC-ACTCATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGG-GGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAATAGAAAATCAACTAAACATCTGGAATA----AATGACA-AC-AT-A-----TA--T-TTT-T--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGTTT---G--AA--AT-A--TCAAA--A-----CTTT-CCAGTAT--AAGACCC------CG-----TACTG----CCACCAG--CCTTCTTC----------AC-AC-TC-atctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAA-TGTCTGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCT-------GG-------AATAAATGACAACATATAT------TTT---TC------ATAAAAACTC--C-----GTAGAATGCAGCATTTGTTGTTTGAAATATCAAAACTTTCCAGTATAAG-----------ACC-CC-GTACTG---C-CA----------------------CCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaata----------AA-AG-TC-TCCCTCACATTTTGGCTC-ACAGAACCTGAGTCACC-------G-------GAT-------T-TGAAACCTGTTGACGCCGGCGGTTT--GC-TTTTTAATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAA-TATTCAAAAAACACAAA-A-TGA--------------------------GT-------AGTAAATAACAAC---CATAAATTGTTTGTATCCCC-CAAAAAAC--TC--A-----CAATAATGCAGCTTTTGTTGTTTAAGATATAAAAA
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAAT---------G------A---GTAGTA----AATAACA-ACCAT-AAATTGTT--TGTAT-C--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTG-TT---T--AA--GATA--TAAAA--AAATGTCTCT-CT---GT--GGGA-CC------CA-----TACTC----CTACCAG--Caatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCATAAATTGTTTGTATCCC-CCAAAAAACTCACAATAATGCAGCTTTTG-TTG-T--TTAAGATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA---T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagta---------ATCAAACATCTGGAGTA----ATTGACA-ACAAT-G-----TT--T-TA--T--CCT--G-AGA---ACTAACCAAGATG-CAGCATTTG--ATTT---T--AA--GATA--TAAAA--A-----TGTT-CC--GGT---GGA--C------CA-----TACCC----CCGCCAG----CGAC-------------A-ACATCATCTCTCACATTCT--CTC--CA-----TC---TAAA-------T-------GG-----------GAAACCCGGAG------GAGA----------TTTAATA-AT-----------------------------AA-CGTTTAA-----ACAAA-A-T-A-----------------TT-------GA-------TGTAAATTACGAC---TAT------TTT---TTTC----------------------CTAAAATTCA--ATATGATA--TAAGATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 22 22222222 444444444444 111111 11111 1 11111111111 1 111111 2222222222222222222222 11 1111111111111111 11111 33333333333333333333333 11111 222222222222222 2222222 333333333333333333333333 44444444444444444444444444444 44444444444444444444444444444444444 66666666666666666666666666666666666666 222222222222 1 0000000000000000000000000000000000000000000000000000000000000 555555555555555555 1 3333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1111 3333333333333 222222 11111 1 1111 1111111111 1111111 111 11 22222222222222222222222 22222222222222222222222222 111111111 1 1 555555555555555 6666666 1 11111
lowQualScore : 88 555 22 111111 5 33 8 99999999 999999999999 8 999999 22222 4 1 1 111 0 77777777777 3 7777 3 3 3 77777 44 3 111111 0 5555 7777 0 2 4 888888 4444444444444444444444 3 6 00 5555555555555555 11111 1 99999999999999999999999 3 3 1 1 77 11111 555 333333333333333 1111111 3 0 777777777777777777777777 0 55555555555555555555555555555 3 1 3 333 3 44444444444444444444444444444444444 555 77777777777777777777777777777777777777 1 1 1 4 66 5 777777777777 1 6 0000000000000000000000000000000000000000000000000000000000000 7 1 3 55 1 000000000000000000 8 0 5555555 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 0 999999 0 0 1 0 5 1 4 0 8888 3 1 1 9999 8 8 3333333333333 8 1 1 11 5 8 5 333333 22222 0 1 0 1 55 8 0 88 7777 1 99999 88 2222222222 4444444 444 8 99 8 2 3 3 88888888888888888888888 1 1 55 9999 0 33333333333333333333333333 5 66 0 1 2 111111111 0 5 0 8 000000000000000 0 8 0 1 5 2222222 1 3 44 1 5 6 0 88888 1
lowQualScore : .. ... .. ...... . .. . ........ ............ . ...... ..... . . . ... . ........... . .... . . . ..... .. . ...... . .... .... . . . ...... ...................... . . .. ................ ..... . ....................... . . . . .. ..... ... ............... ....... . . ........................ . ............................. . . . ... . ................................... ... ...................................... . . . . .. . ............ . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . . . .... . . . .... . . ............. . . . .. . . . ...... ..... . . . . .. . . .. .... . ..... .. .......... ....... ... . .. . . . . ....................... . . .. .... . .......................... . .. . . . ......... . . . . ............... . . . . . ....... . . .. . . . . ..... .
lowQualScore : 00 555 88 222222 0 22 0 00000000 888888888888 0 222222 99999 3 0 7 333 0 99999999999 5 7777 3 3 3 77777 22 1 333333 2 2222 2222 7 9 7 777777 6666666666666666666666 3 4 00 7777777777777777 44444 2 22222222222222222222222 6 6 6 6 22 22222 444 555555555555555 7777777 3 5 000000000000000000000000 5 22222222222222222222222222222 6 2 3 888 3 22222222222222222222222222222222222 888 99999999999999999999999999999999999999 0 5 2 9 44 0 999999999999 4 6 8888888888888888888888888888888888888888888888888888888888888 3 0 2 88 2 000000000000000000 8 0 5555555 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 0 7 2 8 0 6 4444 2 0 0 6666 0 0 0000000000000 0 0 4 88 0 0 6 000000 00000 6 0 0 0 88 8 2 22 0000 0 44444 88 2222222222 6666666 000 0 00 0 2 1 0 77777777777777777777777 0 0 00 1111 3 88888888888888888888888888 0 66 2 5 2 444444444 0 0 0 8 000000000000000 6 0 8 4 0 8888888 0 8 22 0 0 5 2 55555 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------TCACCT-AAT-GTTC--------AGGTTGCCGG-G---T-CGGG-AGCATA------TACTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT----------------------AACATCTGGAGTA----ACTGACA-AT-AT-A-----TTAGT-TAA-T--CTG--A-AAA---AGGCAATGGAATA-CAGCATTAATTGTTT---T--AA--TA-A--TCAAT--A-----TTTT-CCGGGAT--AAGACCC------TG-----TAACG----CCACCAA--CCCTACTC----------AA-AC-TC-TGCATCACTTTTTGGCTC-TCA-----TA---CATG-------T-------GGT-------T-TAAGTCCCATTG------GAAGCTC--AT-TCTTTAATACATCTTAT-TT------CT---TTCTTAATAAAA-CGTTTACATGTCACAAGTC-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTC---CCCCC-TTATTA----TT--A-----CCAAATTGCAGTATTTGAT-TTTAAGATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAGTTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTTTTTAAATTTGCAA--AAAAATATCGCATTAGGTTT--------ACAAATAGT--C------CAG--G--TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAACTGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTTCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAG-GTCCCAATTTCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCAT------TTC---TCCCAT---AAAACTTATTACAATGCAGTATTTG-CTTATAATTAAGATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A---T-TCC-C-CTGA-GGGAAACGGGTGCCATTCCTA-CTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--AAAAT-------TAAAGGGAAGCACCAAAAACACTCTCAGAATTAAATTAAT--TTCATTT
gi|11 : gcACGCTTTGGCTC-CTAG----TG---CATG-------T-------GGTAACAGGTT-TAAAACAAGGTG------AA--CT----T-TTTTAAATAAATCTT---TT------GT---TTCTGAA-AAAA-CTTTTAAAAGTCACAAA-A-T-A------------------T-------GG-------AATAACCAACAAT---CATAC----TTT---TATCC-TTAAAAC---TC--G-----CTAGACAGCAGCATTTGGAGTTTAAGATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaccaccacgtTGGAATAACCAACAATCATACTT--TTA---TCCT-T---AAAACTCGCTAGACAGCAGCATTTG-GAG-T--TTAAGATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A---T-TCC-CACTAACGGG--ACGAGAGAAA-CCCCACCC-CATTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCC-TAGGGGAGACCTCccctcca
gi|13 : ctgctaggaaGCAAA------TACTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TTA-C--CCT--A-AAA-----TCACTAGAATG-CAGCATTTTTTGTTT---T--AA--AT-A--TAAAA--A------AGT-CCAGGTT--AACACCC------CG-----TATCGGATCCCAC-----CCCT--TC----------AC-AC-TC-TTCCTTACATTTTGGCTT-GTCA----TT---CATG-------T-------GGT-------T-TAAAACCCATTT------TAAGCTC--A---TTTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAAT---------ATCAAACGTCTGATTTA----CAT--CA----AT-A-----TT--T-TTA-T--CCT----AAA---ACTCGCTTAAATA-AATAATTTGGTATTTAAAT--AC--AA-A--ACAAA-----------T-CCGGAGG--AGGCCCT------CG-----TATCG----CCACCAA--CCCCATCC----------
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgTAT-AT------TT---TTCTTAATAAAACCATTTAAAAGTC----A-A-T-A-----------------TTGGTCCCAGG-------AGTAAATAACAAA---CATAA----TTTA--TC------ATGA-----C--ATCTTCCTATAATGCAGTATTTTGTATTTAAGATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-
gi|16 : aacttaTCAC-AAAAT---------ATTGGTT-CCTGGAGTAAAATAATGACA-ACAAC-A-----TT--T-TAT------T--ATAAA---TCTTCTTATAATG-CAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttAAACCTTTGAAGTT----AATGGAA-AC--T-A-----TT--T-TCT-TATTCT--A-AAA---GGTCACTAAAATGTCAA-ATTTGGTGTTT---T--AAATTATA--TTAAA--A-----TGTC-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCCCATC--AATTATTC--------AAGTTG--------GTA--GT-AGCATA------TTCTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCACAAAAAT---------AACAAACATCT----T-----ATTTACATTC-AT-A-----TT--T-TTA-T--CCT--A-AAA---TCTCACTCACATA-TAGCATTTGGTGTAT---A--AA--TA-----CGAA--A-----cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACG-GC-ATAA-----TT--T-TCA-C--CCT--A-AAA---CCTCACTAGAATG-CCGCATTTGTTGTTT---C--AA--AT-A--TCAGA--A-----ATGT-GTATGGTTAAGGA-TC------CG-----TACCG----CCACCAATCCCCAACCCCATCCACTTTAC-AT-TC-TTCCTGACGTTTTGGCTTGGCA-----TG---CATA-------T-------GGT-------T-TAAAGCTCATTT------GAAGCTC--AT-TTTT-------TTTTA----------TT---TTCTTAATAAAA-CGTTTAAATGTCACAAA-ACT-A-----------------TT-------GG-------AGTAAATAACGAT---CA--------TT---TCCCCATTATTG----TT--A-----CCAAATTGCAG------------AATACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCCAAAC---TGAAGTA----AATGAAA-ACCAT-A-----TC--T-GTTAT--TCT--A-AAA---ACTCACTAGAATG-CAGCATTTTGTGTTT---T--AA--T--A--TCATT--T-----TTTT-CCGGGGCAGAGGGAAG------TG-----TTCC-----TCACTAG------------------------C-TC-TCCCTAGCGTTTTAACTA-GCAG----AG---CATGGGGTTCTT-------GGT-------T-TAAAATCC----------GA----------TTCTAAATACATC----------------------TGATA-----GTT-----GTTA-AAG-A-T-A-----------------TT-------GA-------AGTAAATAACATC---CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcCC-T---AAAGCTAACTAGAATAGAGCATTTC-GTT-G--TTAGAATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A---CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTTTTTTCAGTGAAAA-TGC-A--AAAA-TACATCATTAGGTTTTTAAGATCGCAAA-CGTTTC------CAT--G--TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTTCAAAGAT-ACAAC-A-T-T-----------------TT-------GT-------AGTAAATAAAAGT---CAT------ATT---TATCC-T-ATAAAT--TC--A-----ATAGACCGTAGCATTTTGTGTTTAAGATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGGT---------CCACC--AAT-GTTC--------AGGTTGA------GGTATGGGTAGCATA------TACCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTT---TT-AA--TA-GCTTT-----------TTTT-TCAGGGT--TGGATGT------GGAGGGATGCCG----CCACTAG--CTCAATCC----------AACAC-AC-TCTTTCACGTTTTAACTT-GCAG----TG---CATG-------acacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCC-ACCCCAAT-GTTC--------AGGTTGAGGGTGGGGT-GGGG-AGCATA------TATTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacACATTTTGGCTC-CTGG----TG---CATG-------CGGTAGCGGGT-------T-TAAAACAAGGTG--------AACT----T-TTTTTAGTa
gi|26 : attataatttttttattataccaccaccacgtAAT-GCATGATTTGGCACTAAAAAAGCAAAAACAA------AAAGG-TACCCCCAAAACCA-CCCTAAAATTATATT--T--TTCAATTTtagtcttt
gi|27 : ATGCAGCATTTGTTTT-T--TTAAGATATAAATA-----TTTTCCctga
gi|3 : ----TCTG-TA-AATTTT-TTCCAGA-TGG-CCCTC-ATTACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNNN------NNN---NNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNN-NNN-N--NNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NNATT-TTC-CACTGA-CGGCAACGAATGT--------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT----TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--T--TTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : CAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TT-CATATGGGAGACTCCCT---CCGCCCC---AATAGTATC--TGGTACACTTTctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T-TTT-T--CTT--T-AAA---ACT------AATG-CAGCATTTGGT-TTT---T--AA--AATA--TTAAA--C-----TTTTTCCGGAGT--AGTCCCC------TG-----TACT----------AG--G-----------------GA-AC-CC-------ACATTTTG-CTC-CAAT----TG---CATG-------A-------GGTACCGAGTT-TAAAACTCA---------GAAGTTT--GGGTTTTTAAAACATCTTATATT------TT---TTCTTAA---AA-CATTTAAATGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAATAACAAC---CAT------GTT---TTATC-ATAAAA----TCTCC-----CTATGGTGCAGCATTTGATATTTAAGATATCAAAATccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-AC-AT-C-----TG--T-TAT-T--C-T--A-AAAGACACTCACTAGAATG-CAGAATTTGATGTTT---TTTAA--TA----TCGTTTTA-----TTTT-ACAGGGC--AGGGTTTGGGGTGCA-----TGCCG----CCACTAG--CTCAATCC----------AACAC-TC-TTCATCATGTTTTAACTC-GCAG----TG---CATG-------T-------GGT-------T-TTGG----GTTT------AAAATCC--GG-TTCTTAATACATCTGAT-gaattaaaaaacatc
gi|4 : catT------TCC---TCCCCT---TTAATTAGCTAGAATAGAGCATTTG-GTC-T--GTAGAATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A---C-ACCACACTGagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTTTTTTCTCT----------A--AAAA-TACAGCATAAGGTTATAAAGATCAGAAA-AATGTC------CAG--G--TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAACTGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATTCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTAA-GACTC-A------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCAC------TTC---CCTC-T---AAAACTTACTAGAATGAAGAATTTA-CTT-A--TTAAGATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A---T-TCC-C-CTGA-GGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtCC----------AACAT-TC-TCCCTGACGTTT-AACTC-GCAG----AG---CATG-------A-------GGT-------TCTGG-----GTTT------GAGATCC--GG-TTCTTAATACATGTGAT------------------------AG-CTGTTAAAACTAGCAAA------------------------------------------GTAAATAGCAAC---CAT------TC-----CCCC-TTTTAA----CC--AA----CTAGAATAGTGCATTTGGTTTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : TCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCATTCCCCCTTTTAAC---CAACTAGAA-TAGTGCATTTGGTTTTTAGAAT-ATAAA-AAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCAT------TCC---CCCT-T---TTAACCAACTAGAATAGTGCATTTG-GTT-T--TTAGAATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A---C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTTTTTGCTTTAAAACTTGC-A--AAAA-TACAGCATAACGTTTTTAAGATCACAAA-AGTTTC------CAG--G--AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAACTGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATTCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTAATCCCCC-GTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT------------------------------------AACTAACTAGAATGAAGTACTTG-CTT-A--TTAAGATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG---------------GGT-------T-TAAAACCCATGG------GAAGTTTTGAT-TATTTAA-ACATTCTAT-TT------TT---TTCTT--T-------CTTAAAAGTCACAAA-A-T-A-----------------TT-------GGTCCCAGGAGTAAA--ACAAC---CAT------GTTA--TCA----TAAAA----TCTTC-----TTATAATGCAGCATTTGGTATATAAAATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATGCAGCATTTGGTATATAAAATATC-AA-AATGTT----CAA---AC-AACCC-ACTCATCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCCAAT-GTTCGGGGGAGGGGGGGGGGGG-GGGGGGGGGG-AGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAATAGAAAATCAACTAAACATCTGGAATA----AATGACA-AC-AT-A-----TA--T-TTT-T--CAT--A-AAA---ACTCCGTAGAATG-CAGCATTTGTTGTTT---G--AA--AT-A--TCAAA--A-----CTTT-CCAGTAT--AAGACCC------CG-----TACTG----CCACCAG--CCTTCTTC----------AC-AC-TC-atctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgta------TT---TTCATAA--AAA-TGTCTGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCT-------GG-------AATAAATGACAACATATAT------TTT---TC------ATAAAAACTC--C-----GTAGAATGCAGCATTTGTTGTTTGAAATATCAAAACTTTCCAGTATAAG-----------ACC-CC-GTACTG---C-CA----------------------CCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaata----------AA-AG-TC-TCCCTCACATTTTGGCTC-ACAGAACCTGAGTCACC-------G-------GAT-------T-TGAAACCTGTTGACGCCGGCGGTTT--GC-TTTTTAATATATTTGAT-ATGCGTGCTTGCGTTTTAAAAAAAA-TATTCAAAAAACACAAA-A-TGA--------------------------GT-------AGTAAATAACAAC---CATAAATTGTTTGTATCCCC-CAAAAAAC--TC--A-----CAATAATGCAGCTTTTGTTGTTTAAGATATAAAAA
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaTTTTAAAAAAAATATTCAAAAAACAC-AAAAT---------G------A---GTAGTA----AATAACA-ACCAT-AAATTGTT--TGTAT-C--CCCCAA-AAA---ACTCACAATAATG-CAGCTTTTGTTG-TT---T--AA--GATA--TAAAA--AAATGTCTCT-CT---GT--GGGA-CC------CA-----TACTC----CTACCAG--Caatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCATAAATTGTTTGTATCCC-CCAAAAAACTCACAATAATGCAGCTTTTG-TTG-T--TTAAGATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA---T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagta---------ATCAAACATCTGGAGTA----ATTGACA-ACAAT-G-----TT--T-TA--T--CCT--G-AGA---ACTAACCAAGATG-CAGCATTTG--ATTT---T--AA--GATA--TAAAA--A-----TGTT-CC--GGT---GGA--C------CA-----TACCC----CCGCCAG----CGAC-------------A-ACATCATCTCTCACATTCT--CTC--CA-----TC---TAAA-------T-------GG-----------GAAACCCGGAG------GAGA----------TTTAATA-AT-----------------------------AA-CGTTTAA-----ACAAA-A-T-A-----------------TT-------GA-------TGTAAATTACGAC---TAT------TTT---TTTC----------------------CTAAAATTCA--ATATGATA--TAAGATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
blockSeqs : AG ATT CG ACCGGC C CC T GGGGGAGG AGGGTGGGGTG T TAGGCC CCC C T T AAA A AGAAAATCAAC A AAAT T A A AATTG . G CTTAT CAA GACA T T AAAT GATATAAAAAAATGTC T A TA TTTGGGGTGCA GGATC C TCCCCAACCCCATCCACTTTAC A A T G GG GAACC AGT GGGTTCTT AACAGGT C CTGTTGACGCCGGCGGTTTGC TTGATATGCGTGCTTGCGTTTTAAAAAA C T A AC G GAAAATCAACTAAACATCTGG ATA AAATTGTTTGTATCCCCCAAAAAACTCA G C G G CT T GCTCGTAACTGT A G TCTTACCGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCTGT T T T CA C AGGGTTGGATGT C A GTGTT G AAA CCAGCC C A T T TTAT A A T ATAT T T TTAACCAACT . A T TT C . T AGAGGC CCGCC T A A TT A AT AAAA C TTTC T GGGGTAATCC ATTACC AGA A TC G N A C AAATTGTTTGTATCCCCCAAAA C C TT T AATGTCTCTCTGTGGGACC . AA T A NNATT A A C C AAACCCCACCCCA T T C TTCC G A AA C C T TGG A
blockSeqs : TGT AG GGC C CC . . GGGGGGGGGGG . . CAT C G A TTC A AC G . . C . . . . TTAT AT A . G TTT ATTATATTAAAAT . G AG TGTGGAGGGA G C CTCAATCCAAC . . G G C G . CGGTAGCG ACCGAGT . CCATGGGAAGTTTTGAT CTTATATTTTTTCTTAA . A A A . TTGGTCCCAGG . ACTTTTATCCTTAAAACTCG T A G A TG . T T G CAACAAATGGAGGAGACACATACTAAT . T T C T AGCAGCAGG G . CGTG A ATC AAA A T A A TAAT G T A A . . AAAACTTGCA . A A TA C . G . G T . A TG C AA . T TATA T AGATGGCC GTAACA . . C . C N N ACTTTTATCCTTAA A G G G NNNNNNNNNNNNNNNNN . NN N N TGTAT A A . C T . A C TTCA A A CA A . C T G
blockSeqs : CA T . A . . . AGGTAT . . T C C G TTT . AT C . . C . . . . TAC A T . G TT AATATTAAACT . A . CCCCG G T CTCAATCCAAC . . A G G A . T . . TCATTTGAAGCTCAT CTTTTGTTTCTGAAAA . G T A . TTGGTCCCAGG . AATTTATCATGACATCTTC A T G G TT . G . G TGCCACCAGCCT G . A A GG . . . . . G G G A C TAAT . A A C . . GAAAATGCA . T T TT C . T . G G . C . . G . C TAA T AGGTAAGA ACTCAT . . . . C A T TCCTCCCCTTT N C G T ATGTTTGGGAGAGGTAC . AT A A ACA . A . . . A A AAT C A T C . . T C
blockSeqs : . . . . GTA . . C A C G CTA . AT A . . A . . . . TAT A G . G T TATCGTTTTAT . G . CCTCG G T CCTTCTTCAC . . C A G G . T . . CCATTTTAAGCTCA TTTATTTTCTTAATAA . G G A . TTGGTCCCAGG . GTTTTATCATAAAATCTCC G C A A TT . G . A G G G . . . C C . . . A . A A TT . . T . G . A AAA . AAACAA A . . . . . A A NNNNNNNNNN A N N N ATCCAGAGGCCAGCCG . AA C G AT . A . T C AA T .
blockSeqs : . A C A C CTG . AA A . . . . . . . TAT A T . T T GATATAAAAAT . A . AAGTG G T CCCTTCAC . . C A G G . T . . TCAGAAGTTTGGG TCTATTTTTTTCTTT . A T A . TTGG . ATTTATCCTATAAATTCA T G G T TG . G . . A . . A A TTCCCTCTAA T G G T CTTTCCGGAATAACC . AA A T AC . A
blockSeqs : T A A TCA . AC A . . . . . . . CAC A C . G A ATATCAGAAA . G . CCCTG G C CGACA . . G G C G . A . . GTTTAAAATCCGG CTGATA . T A A . TTGA . TTTCCCCATTATTGTTA G A G A CT . . . . . . TCCCCCTTTT A A C A AAATCTAGGGGT . TA A G AT . .
blockSeqs : . AT A . . . . . . . TTT A A . G C ATATCAAAAC . A . CCCCG C C GGA . . C A C T . T . . GTTTGAGATCCGG GTGAT . G A A . TTGT . GTTATCATAAAATCTTC T A T G A . . A G G T TCGAGAAAAGT . . . . AC .
blockSeqs : G A . . . . . . . ATT T A . G T ATATAAAAA . A . TCCG C C . . . C A G G . A . . AAGGTGAACTT . . A G A . TTGA . TCCCCCTTTTAACCAA G A T G . C A C A
blockSeqs : . . . . . . . . TTT A A . A T TATCATTTT . . . CCCA . . . . . G G G . G . . AAGGTGAACTT . G A A . TGG . TTTTCATAAAAACTCC T A A A C T T
blockSeqs : . . . . . . . . ATC A A . T G AAAACAAA . . . CCA . . . . . A G . T . . CCGGAGGAGA . . . A . GT . TTTTTTC A A . .
blockSeqs : . . . . . . AT G A . T T TAGCTTTT . . . . . . . . CCGA . . . . .
blockSeqs : . . . AT . . . . T . .
blockSeqs : .
blockSeqCons : ** GGGGGG****** AT********* ** ATATAAAAAT************ CCCTCCGAC************** G**** CCGTTTGAAGCTCGN********* TTNATTTTTCTTAA*************** A** ATTTTATCATNAAANCTCN******************* TAAT AACGCA******* TT TAA** T* AGATAGCC** ATTACN* TCCCCCNTNN************* T*** T******
originalCons : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACCCCAAT-GTTC--------AGGTTGAGGG-GGGGTANGGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAAT---------ACCAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AA--NA-A--TCAAA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAG--CCCNACCC----------AA-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTG------GAAGCTC--GT-TTTTTAATACATCTTAT-TT------TT---TTCTTAATAAAA-CGTTTAAANGTCACAAA-A-T-A-----------------TT-------GG-------AGTAAATAACAAC---CAT------TTT---TCCCC-TTATAA----TC--A-----CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTNAAACTTGCAA--AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGGGGTAG-NNCCC-ATTNCTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCAT------TTC---TCCC-T---AAAACTNACTAGAATGNAGCATTTG-NTT-T--TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATAATT-C-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
finalCons : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCCACC--AAT-GTTC--------AGGTTGGGGGGG------GGG-AGCATA------TACTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAATAT---------CAAACATCTGGAGTA----AATGACA-AC-AT-A-----TT--T-TNT-T--CCT--A-AAA---ACTCACTAGAATG-CAGCATTTGGTGTTT---T--AAATATAAAAAT------------TTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAGCCCTCCGAC--------------AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATG-------T-------GGT-------T-TAAAACCCGTTTGAAGCTCGN---------TTTTTAATACATTTNATTTTTCTTAA---------------AA-CGTTTAAANGTCACAAAA--T-A-----------------TT-------GG-------AGTAAATAACAAC---CATATTTTATCATNAAANCTCN-------------------CTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTTTTTTCTTTAACGCA-------AAAA-TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTCTAA--ATTTTT-TCCAGATAGCC--CCCATTACN-CCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCATTCCCCCNTNN-------------AACTNACTAGAATGNAGCATTTG-NTTT---TTAAGATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAATT------TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 4444444444 666666666666666666666666666 111111 11111 1 111111 11111 111 111 11111111111111111111 1111111111111111 11111 55555555555555555555555 11111 11111111 2222222 1111111 22222222222222 3333333333333333333333333333333 4444444444444444444444444444 11111111111 11111111 222222222222 1 9999999999999999999999999999999999999999999999999999999999999 555555555555555555 1 3333333 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 333333 1 1 1111 11 55555555555 111 11 222222 11111 1 1111 1 111 111111 111 11 33333333333333 22222222222222222222222222 111111111 1 1 555555555555555 3333333 1 11111
lowQualScore : 88 555 22 3333333333 0 8 8 444444444444444444444444444 999999 22222 4 1 1 111 1 999999 8888 77777 11111 44 3 000 44 44 000 2 33 2 2 2 6666 99999999999999999999 3 7 55 3333333333333333 11111 88888888888888888888888 4 3 3 1 1 77 11111 555 55555555 1111111 3 2 0000000 44444444444444 3 2 2 0 1 7777777777777777777777777777777 77777 44 44 33 3 3 7777777777777777777777777777 6666 3 99999999999 999999 3 1 55555555 44 1 0 1 4 66 5 777777777777 1 1 6 9999999999999999999999999999999999999999999999999999999999999 7 1 3 55 1 000000000000000000 8 0 5555555 66 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 0 999999 0 0 0 1 0 0 66 8888 3 1 1 9999 8 8 8 11 11111111111 444 11 1 1 11 5 8 5 333333 22222 0 1 0 1 55 8 0 88 7777 1 99999 88 6 555 1 888888 444 8 99 8 2 3 3 88888888888888 4 5555 1 1 1 7777 3 99999 2 00000000000000000000000000 4 66 0 1 2 111111111 0 5 0 8 000000000000000 0 8 0 1 5 6666666 1 55 44 1 2 5 0 88888 1
lowQualScore : .. ... .. .......... . . . ........................... ...... ..... . . . ... . ...... .... ..... ..... .. . ... .. .. ... . .. . . . .... .................... . . .. ................ ..... ....................... . . . . . .. ..... ... ........ ....... . . ....... .............. . . . . . ............................... ..... .. .. .. . . ............................ .... . ........... ...... . . ........ .. . . . . .. . ............ . . . ............................................................. . . . .. . .................. . . ....... .. .................................................................................................................................................... ... . ...... . . . . . . .. .... . . . .... . . . .. ........... ... .. . . .. . . . ...... ..... . . . . .. . . .. .... . ..... .. . ... . ...... ... . .. . . . . .............. . .... . . . .... . ..... . .......................... . .. . . . ......... . . . . ............... . . . . . ....... . .. .. . . . . ..... .
lowQualScore : 00 555 88 5555555555 6 0 0 666666666666666666666666666 222222 99999 3 0 7 333 4 666666 5555 55555 77777 66 3 222 66 22 888 9 77 9 9 9 1111 99999999999999999999 3 2 00 5555555555555555 44444 55555555555555555555555 0 6 6 6 6 22 22222 444 55555555 7777777 3 5 1111111 11111111111111 6 4 2 9 0 3333333333333333333333333333333 77777 22 55 88 1 1 9999999999999999999999999999 5555 1 66666666666 666666 3 2 33333333 22 0 6 2 9 44 0 999999999999 7 4 6 6666666666666666666666666666666666666666666666666666666666666 3 0 2 88 2 000000000000000000 8 0 5555555 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 2 000000 2 8 7 0 1 3 88 4444 2 0 0 6666 0 0 0 00 22222222222 000 00 0 4 88 0 0 6 000000 00000 6 0 0 0 88 8 2 22 0000 0 44444 88 0 666 4 444444 000 0 00 0 2 1 0 44444444444444 4 3333 0 0 0 5555 6 11111 0 55555555555555555555555555 4 66 2 5 2 444444444 0 0 0 8 000000000000000 6 0 8 4 0 6666666 0 88 22 0 5 0 2 55555 0
consensus : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCCA-CACC-AAT-GTTCAGGTT-------------G-----GGG-GTG-GGGAGCATATA------CTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAATA-----TCAA----ACATCTGGAGTAAATGACA-A-C-ATA-----TT--T-TNN-T--CCT--AAAA---ACTCACTAGAATG-CAGCATTTGGTGTTTTA-A-A-TA----T-A--A---AA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAGCC--C---------T-CCG----AC-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATGT-------GGT-------T-TAAAACCC-GTTTGAAGC-------TC-GN-TT-TTTAATACATCTNAT---TT---TTCT--T-----------AA---AA--C-GTT--TAAANGTCACAAA-A-T-A-----------------TTGG-------AGTAAA----TAACAAC-CAT-----A-----TT------T-TATCATN---AAANCTCCCTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTT-TTTTC--TTT---AAA---TGCAA---AAA--TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCCGAGGTA-A-CCCCCATTACTCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCA-T------------TCC-CCCCTAAAACTNACTAGAATGNAGCATTTGNTT-T--T-TAAG-----ATATAAANA-----TTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAAT--TTC-TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
Reference ( family-438 ) : NNGGGTCCAAGGGAGGTNTGGCGG---GGCCC--CACC-AAT-GTTCAGGTT-------------G-----GGG-GGG-GGGAGCATATA------CTTTGCCCC--C--CCCCCANTATTTTGATAAAAATGTCTAAAGGTCAC-AAAATA-----TCAA----ACATCTGGAGTAAATGACA-A-C-ATA-----TT--T-TNT-T--CCT--AAAA---ACTCACTAGAATG-CAGCATTTGGTGTTTTA-A-A-TA----T-A--A---AA--A-----TTTT-CCGGGGT--AGGACCC------CG-----TACCG----CCACCAGCC--C---------T-CCG----AC-AC-TC-TCCCTCACGTTTTGGCTC-GCAG----TG---CATGT-------GGT-------T-TAAAACCC-GTTTGAAGC-------TC-GN-TT-TTTAATACATTTNAT---TT---TTCT--T-----------AA---AA--C-GTT--TAAANGTCACAAA-A-T-A-----------------TTGG-------AGTAAA----TAACAAC-CAT-----A-----TT------T-TATCATN---AAANCTCNCTANAATGCAGCATTTGGTGTTTAAGATATCAAAATNTTCCAG-AGGAG-----------ACC-CCCGTAC-----C-CAG-------------------AACCGGAGT-------AACCATATAT-TAAT-TATTCTAAAAACTCACTAGAATGCAGCATTTNGTGTTTTTAATATCATTTTTTTTC-GCG-----GTTGG----GGCAG-GGGTG-GTGC-TCC-GCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATAAAAAATNTCGAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACTCTCTCAGTGTTCACAGTGCATGACGTACCGGGTTTNAAACCCGGTGGAAGTTCATTTTATTTGATACATGTTATAGTTTAATAAAAACGTGTAAAAGTNACAAAA---TATTCGGGAG-TAA-ATAACAATCTT-TTTTC--TTT---AA----CGCAA---AAA--TACAGCATTAGGTTTTTAAGATCACAAA-AGTTTC------CAG--G--TACCCCAACCAGCAGNGGACAAC-CNCTCCAAGACCAAACTGCAGTAAATGACAACCATATCTTTTATCCTAAAAACTCACTAAAATTCAGCATTTGGTGTTT----TNTC-TA-AATTTT-TTCC-AGATA-G-CCCCCATTACNCCACCAGCAGG---GG-ACA--CCTC-CTCCCACACTGGTGTAANTAACAACCA-T------------TCC-CCCNTNNAACTNACTAGAATGNAGCATTTGNTT-T--T-TAAG-----ATATAAAAA-----NTNTCCGGGAGAGGTC--C--CC-TACTCCAACCAGCAGAGA---A---T-TCC-CACTGA-GGGCAACGAGTGTCA-TCCTA-CC-CGTTCTACAATGAACCAGAAT-GCACGATTTGGCACTAAGAAAACCAAAAT--T---TANGGGAGACCCCCNAAANCACCCCCAGAATTATATT--T--TTCANTTT
gi|1 : GGGTCCA---GAGGTTTGCCGG-------T--CACCTAAT-GTTCAGGTT-------------G-----CCG-GGTCGGGAGCATATA------CTTTGCCCT--C--TCC--AATATATTGATAAAAATGTCAAAAGTT------------------A----ACATCTGGAGTAACTGACA-A-T-ATA-----TTAGT-TAA-T--CTG--AAAA---AGGCAATGGAATA-CAGCATTAATTGTTTTA-A-T-AA----T-C--A---AT--A-----TTTT-CCGGGAT--AAGACCC------TG-----TAACG----CCACCAACC--C---------TACTC----AA-AC-TC-TGCATCACTTTTTGGCTC-TCA-----TA---CATGT-------GGT-------T-TAAGTCCC-ATTGGAAGC-------TC-AT-TC-TTTAATACATCTTAT---TTCT-TTCT--T-----------AATAAAA--C-GTT--TACATGTCACAAGTC-T-A-----------------TTGG-------AGTAAA----TAACAAC-CAT-----------TTCCCCCCT-TATTATT---A-------CCAAATTGCAGTATTTGAT-TTTAAGATATCAAGATATTCCAG-AGGAG-----------ACC-CTCGTAC-----C-CAG-------------------AACTGGAGT-------AATCATATATGTAATCTAATCTAAAAACTCACTAGGATACAGCATTTGGTGTTTTTAATATCATTTTTTTTC-GTGTTTGTGTTGG----GACAG-GGGTG-ATGCATCCAGCCACTAGCTCAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATATATAAAATGTCAAGG---G--GCCTACTCCAACCAGCAGAGAACACCACACATTCTCAGTGTCCACAGTGCATGACATACTTGGTTGCAAACCCAGTGGAAGTTTATTTTATTTGATACATGTTGTAGTTAAA-AAAAATGTGTAAAAGTCACAAAA---TGTTCGGGAG-TGT-ATGATATTTTTCTTTTT--TTT---AAATT-TGCAA---AAAAATATCGCATTAGGTTT--------ACAAATAGT--C------CAG--G--TACCCCATCAAGCAGGGGACAAC-TCCTCCAAGATCAAACTGCAGTAAATGACAACCTTATCTTTTATCCTGAAAACTCACTAAATTTCAGCATTTGGTGTTT----TATC-TA-TATTTTGTTCCGGGGTAGG-TCCCAATTTCTCCACCATCAGA---GG-ACA--CCTC-CTCCCACACTGGTGTTATTAACAACCATT------------TCT-CCCATAAAACTTATTACAATGCAGTATTTGCTTATAAT-TAAG-----ATATGAACA-----TTTTCAGGGAGAGGTC--C--CCGTAATCCTTCCAGCAAAGA---A---T-TCC-C-CTGA-GGGAAACGGGTGCCATTCCTA-CTGTGTTCTACAATGAACCAGAAT-GCACAATTTGGCACTAAGAAAA--AAAAT--T---AAAGGGA-AGCACCAAAAACACTCTCAGAATTAAATTAAT--TTCATTT
gi|11 : gcACGCTTTGGCTC-CTAG----TG---CATGT-------GGTAACAGGTT-TAAAACAA-GGT-GAA-C-------T---T-TT-TTAAATAAATCTTTT---GT---TTCT--G-----------AA---AAAAC-TTT--TAAAAGTCACAAA-A-T-A-----------------T-GG-------AATAAC----CAACAAT-CAT-----AC----TT------T-TATCCTT---AAAACTCGCTAGACAGCAGCATTTGGAGTTTAAGATATCAACACTTTCCGG-AATA------------ACC-CCC--AC-----C-Cga
gi|11 : ttattattgttattattatcatccaaccaccacgtTGGAATAACCAACAATCA-TACTT--------TTA-TCCTTAAAACTCGCTAGACAGCAGCATTTGGAG-T--T-TAAG-----ATATCAACA-----CTTTCCGGAATAA--C--C--CC-CACCCC--TC-----------A---T-TCC-CACTAACGGG--ACGAGAGAAA-CCCCACCC-CATTCTctcattcccactaacgggacgagagaaaccccaccccattctccctcca
gi|12 : ttattattgttattattatcatccaaccaccacgtacgctttggctcctagtgcatgtggtaacaggtttaaaacaaggtgaacttttttaaataaatcttttgtttctgaaaaaacttttaaaagtcacaaaataCTATAATTCACAAGACTTGCACACTTTGGCACTTAGAAAACCAAAAT--TTCCTAGGGGAGACCTCccctcca
gi|13 : ctgctaggaaGCAAATA------CTTTGCCCCCCC--CCCCCATTTTTTTTATAAAAATGTAAAAAGGTCAC-AAAATA-----CCAA----ACATCTGGAGTAAATGACA-A-C-ATA-----TT--T-TTA-C--CCT--AAAA-----TCACTAGAATG-CAGCATTTTTTGTTTTA-A-A-TA----T-A--A---AA--A------AGT-CCAGGTT--AACACCC------CG-----TATCGGATCCCACC--CC--T---------T-C------AC-AC-TC-TTCCTTACATTTTGGCTT-GTCA----TT---CATGT-------GGT-------T-TAAAACCC-ATTTTAAGC-------TC-A---T-TTTAATACtctcctctcatggcgggaatgggagacccctctggtactcttcctctccgcggccagccacgtgcatttccctggctcctaccaagtggttttcctcggtttttttaaggtgtttttttttttaagaagaaatacttcaatgctcttaaatgcatatattacgaacagctttttcacatgtttgcttctggtaca
gi|14 : CC--T--CCCCCAGTATTTTAATAAAAATGTTTCAAACTCATAAAAATA-----TCAA----ACGTCTGATTTACAT--CA-----ATA-----TT--T-TTA-T--CCT---AAA---ACTCGCTTAAATA-AATAATTTGGTA-TTTA-A-A-TA----C-A--AAACAA--A--------T-CCGGAGG--AGGCCCT------CG-----TATCG----CCACCAACC--C---------
gi|15 : ttattcccatctatagaaatatctgtggtccatctttcactaccataggcgtggtagctgtggcagtgggagtgAT---TT---TTCT--T-----------AATAAAA--CCATT--TAAAAGTCA-----A-T-A-----------------TTGGTCCCAGGAGTAAA----TAACAAA-CAT-----A-----AT------T-TATCATG---ACATCTTCCTATAATGCAGTATTTTGTATTTAAGATATAAAAATGTTC--A-AGGAT-----------ATC-CCC-CAC-----C-AAC-------------------AAATGGAGG-------AGACACATAC-TAAT-catcc
gi|16 : aacttatatTCACAAA-A-T-A-----------------TTGGTTCCTGGAGTAAAATAATGACAAC-AAC-----A-----TT------T-TATTAT----AAATCTTCTTATAATGCAACGTTTGgtccccccaccccacactctacaataattgaaactctcttacggtcatgattataacactccgt
gi|17 : atattatattttttAA----ACCTTTGAAGTTAATGGAA-A-C--TA-----TT--T-TCT-TATTCT--AAAA---GGTCACTAAAATGTCAA-ATTTGGTGTTTTA-A-ATTA----T-ATTA---AA--A-----TGTC-CCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : aacaactaatctaatGTGCATGGAGTACCGGGTTTCAAACTCGGTAAATGTTTAttcccacacaacctacttattaatttctggtgcatggagtaccgggtttcaaactcggtaaatgtttacat
gi|19 : aacaactaatctaataaacctttgaagttaatggaaactattttcttattctaaaaggtcactaaaatgtcaaatttggtgttttaaattatattaaaatgtcccttcccacacaacctacttattaatttctgCC--CATC-AATTATTCAAGTT-------------G-----GTA-GT-----AGCATATT------CTTTGTCTT--C--CCGCCTCCATCCTG-TAAAAA-GTTTTAATGTCACAAAAATA-----ACAA----ACATCT----T-ATTTACATT-C-ATA-----TT--T-TTA-T--CCT--AAAA---TCTCACTCACATA-TAGCATTTGGTG-TATA-A-A-TA----C-G--A---AA--cat
gi|2 : CC--A--CCCACACTATTTTGATAAAA-TGTCTAACGGTCAC-AAAATA-----CCAA----ACATCTGGAGTAAATGACG-G-C-ATAA----TT--T-TCA-C--CCT--AAAA---CCTCACTAGAATG-CCGCATTTGTTGTTTCA-A-A-TA----TCA--G---AA--A-----TGTG-TATGGTT--AAGGATC------CG-----TACCG----CCACCAATC--CCCAACCCCAT-CCACTTTAC-AT-TC-TTCCTGACGTTTTGGCTTGGCA-----TG---CATAT-------GGT-------T-TAAAGCTC-ATTTGAAGC-------TC-AT-TT-TT-------TTTTAT---TT---TCTTAAT-----------AA---AA--C-GTT--TAAATGTCACAAA-ACT-A-----------------TTGG-------AGTAAA----TAACGAT-C-------A-----TT------T-CCCCATT----ATTGTTACCAAATTGCAG------------AATACATCAAGGTTTTCCAG-GGGAG-----------ACCACTCGTACTCTTAC-CGGCAAGGGTCCATCTCTCCCAAACTGAAGTAAATGAAAACCATATCT---GT-TATTCTAAAAACTCACTAGAATGCAGCATTTTGTG-TTTTAATATCATTTTTTTCC------------GG----GGCAGAGGGAA-GTGT-TCC--TCACTAGCTC
gi|2 : cgcaacccatCAA----AC---TGAAGTAAATGAAA-A-CCATA-----TC--T-GTTAT--TCT--AAAA---ACTCACTAGAATG-CAGCATTTTGTGTTTT--A-A-TA----T-C--A---TT--T-----TTTT-CCGGGGCAGAGGGAAG------TG-----TTCC-----TCACTAG---------------------------C-TC-TCCCTAGCGTTTTAACTA-GCAG----AG---CATGG-------GGT-------T------CTTGGTTTAAAAT-------CC-GA-TT-CTAAATACATCTGA---------------T-----------A----------GTT-------GTTA-AAG-A-T-A-----------------TTGA-------AGTAAA----TAACATC-CAtccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctccCC-CTCCTAAAGCTAACTAGAATAGAGCATTTCGTT-G--T-TAGA-----ATATAAAAA-----AAATCTAGG---GGT-------C-TATTCCAACCGGCTGAGA---A---CACCC-CACTacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttagaatataaaaaaaatctaggggtctattccaaccggctgagaacaccccactcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|2 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaAGAATATAAAAAAAATCTAGG---G--GTCTATTCCAACCGGCTGAGAACACCCCACTCACTCAGTGTTCACAGTTCATGACGTAACGGGTTTAAAACCCAATTGAAGTTCATTTTATTTGATGCATGTTATAGTTTTATAAAAACGT-TAAAAGTAACATAATATTATTCAGGAGTTAATATAACAATCTT-TTTTC--AGTGAAAA----TGCAA---AAA--TACATCATTAGGTTTTTAAGATCGCAAA-CGTTTC------CAT--G--TACCCCCACCcactcagtgttcacagttcatgacgtaacgggtttaaaacccaattgaagttcattttatttgatgcatgttatagttttataaaaacgttaaaagtaacataatattattcaggagttaatataacaatcttttttcagtgaaaatgcaaaaatacatcattaggtttttaagatcgcaaacgtttccatgtacccccacc
gi|20 : cgcaacccatccacccacactattttgataaaatgtctaacggtcacaaaataccaaacatctggagtaaatgacggcataattttcaccctaaaacctcactagaatgccgcatttgttgtttcaaatatcagaaatgtgtatggttaaggatccgtaccgccaccaatccccaaccccatccactttacattcttcctgacgttttggcttggcatgcatatggtttaaagctcatttgaagctcatttttttttattttcttaataaaacgtttaaatgtcacaaaactattggagtaaataacgatcatttccccattattgttaccaaattgcagaatacatcaaggttttccaggggagaccactcgtactcttaccggcaagggtccatctctcccaaactgaagtaaatgaaaaccatatctgttattctaaaaactcactagaatgcagcattttgtgttttaatatcatttttttccggggcagagggaagtgttcctcactagctctccctagcgttttaactagcagagcatggggttcttggtttaaaatccgattctaaatacatctgatagttgttaaagatattgaagtaaataacatccaacccaaccccccccccccccccccacccccaccctcctaaagctaactagaatagagcatttcgttgttTT--CAAAGAT-ACAAC-A-T-T-----------------TTGT-------AGTAAA----TAAAAGT-CAT-----A-----TT------T--ATCCTA---TAAATTCAATAGACCGTAGCATTTTGTGTTTAAGATATCAACATTTTCTAG-AGATGCTCGTAACTGTATC-CCCGTAC-----C-
gi|22 : tGGGTCCAAGGGAGGATTGGT---------C--CACC-AAT-GTTCAGGTT-------------G-----AGGTATG-GGTAGCATATA------CCCCTCCCC--T--CCCCtccgtatccccgctcttc
gi|23 : ataccaacttaagcgtagccgagGCCGCATTTTGTGTTTTTAATAGC-TTTTTTTTC-AGG-----GTTGGATGTGG-AG-GGATG-------CC-GCCACTAGCTCAATCCAtcccgacccacccaacatatgaataaaatatca
gi|23 : G-CCGCATTTTGTGTTTTT-A-A-TAGCTTT------------------TTTT-TCAGGGT--TGGATGT------GGAGGGATGCCG----CCACTAGCT--CAA-------T-CCA----AC-AC-AC-TCTTTCACGTTTTAACTT-GCAG----TG---CATGacacactctttcacgttttaacttgcagtgcatggg
gi|24 : AGGTGTGGCGG---GGCCCA-CCCC-AAT-GTTCAGGTT-------------GAGGGTGGG-GTG-GGGAGCATATA------TTTTGCCCC--gg
gi|25 : acatccgatagcataggcataggaatcgggggtgggggacACATTTTGGCTC-CTGG----TG---CATGCGGTAGCGGGT-------T-TAAAACa
gi|25 : attataatttttttattataccaccaccacgtGTGCATGCGGTAGCGGGTTTAAAACAAGGT-GAACTTT-TTTTAGTTaaggtgaactttttttagttagtcttt
gi|26 : attataatttttttattataccaccaccacgtacattttggctcctgAAT-GCATGATTTGGCACTAAAAAAGCAAAAAC--A---AAAAGG-TACCCCCAAAACCACCCT-AAAATTATATT--T--TTCAATTTagtcttt
gi|27 : ATGCAGCATTTGTTT-T--TTTAAG-----ATATAAATA-----TTTTCCctga
gi|3 : ----TCTG-TA-AATTTT-TTCC-AGATG-G-CCCTCATTACCCCACCAACAAG---GG-ACA--CCCC-CTCCCNNNNNNNNNNNNNNNNNNNNNN-N------------NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--N-NNNN-----NNNNNNNNN-----NNNNNNNNNNNNNNNN--N--NN-NNNNNNNNNNNNNNNNNN---NNATT-TTC-CACTGA-CGGCAACGAATGT--------------TTCTACAATGAACCAGAAT-GC-CAACTTGGCACAATGAAAAACAAAATAAT---TACGGGAGGCCCCCCAAAACA-TCCCAGAATTATATT--T--TTCAGTTTctttccctaacaatcgatcacaccatcttccacactctttcc
gi|3 : CAAACT-GTATGATTTGGCACTTAGAAAACCAAATT--TTCATATGGGAGACTCCCT---CCGCCCC---AATAGTATC--TGGTACACTTTctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|3 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtga-----TC--T-TTT-T--CTT--TAAA---ACT------AATG-CAGCATTTGGTTTTTAA-A-A-TA----T-T--A---AA--C-----TTTTTCCGGAGT--AGTCCCC------TG-----TACT----------AG------------------G----GA-AC-CC-------ACATTTTG-CTC-CAAT----TG---CATGA-------GGTACCGAGTT-TAAAACTC-A---GAAGT-------TT-GGGTT-TTTAAAACATCTTATATTTT---TTCT--T-----------AA---AA--C-ATT--TAAATGTCACAAA-A-T-A-----------------TTGGTCCCAGGAGTAAA----TAACAAC-CAT-----G-----TT------T-TATCATA---AAATCTCCCTATGGTGCAGCATTTGATATTTAAGATATCAAAATccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgctctttttctttaaaactaatgcagcatttggtttttaaaatattaaactttttccggagtagtcccctgtactagggaacccacattttgctccaattgcatgaggtaccgagtttaaaactcagaagtttgggtttttaaaacatcttatattttttcttaaaacatttaaatgtcacaaaatattggtcccaggagtaaataacaaccatgttttatcataaaatctccctatggtgcagcatttgatatttaagatatcaaaatgaattaaaaaacatc
gi|4 : tctgtaaattttttccagatggccctcattaccccaccaacaagggacaccccctcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccactgacggcaacgaatgtttctacaatgaaccagaatgccaacttggcacaatgaaaaacaaaataattacgggaggccccccaaaacatcccagaattatatttttcagtttctgatctaaattctaatttatctaaattctgatttattttataacatttgagtataaaatggaaggactgcgaggacctgaaaaatgtgacaaactgtatgatttggcacttagaaaaccaaattttcatatgggagactccctccgccccaatagtatctggtacactttccctcctcacaaggggattgcatttcactggcccctaccaaacggttttcctcgatatgcattcctttctggctacgtccctgc-A-C-ATC-----TG--T-TAT-T--C-T--AAAAGACACTCACTAGAATG-CAGAATTTGATGTTTTTTA-A-TA----T-C--G---TTTTA-----TTTT-ACAGGGC--AGGGTTTGGGGTGCA-----TGCCG----CCACTAGCT--CAA-------T-CCA----AC-AC-TC-TTCATCATGTTTTAACTC-GCAG----TG---CATGT-------GGT-------T-TTGG-----GTTTAAAAT-------CC-GG-TT-CTTAATACATCTGAT---AG---TTGT--T-----------AA---AA--T-ATT--GAACGACCACGAgaattaaaaaacatc
gi|4 : cat-T------------TCCTCCCCTTTAATTAGCTAGAATAGAGCATTTGGTC-T--G-TAGA-----ATATAAAAA-----T----CGAGAAAAGT-------T-TACTCCATCCAGCAGAGA---A---C-ACCACACTGccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgtagaatataaaaatcgagaaaagtttactccatccagcagagaacaccacactgtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|4 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcAGAATATAAAAA---TCGAGA---AAAGTTTACTCCATCCAGCAGAGAACACCACACTGTCTCAGTACTCACAGTGCATGACATGCTGGGTTTGAAACTCAAGGGTAGTTCAATTTATACGATACATTTTATAGTTTAATAAAAACGTATAAAAGTTACAAAA---TATTCGGGAG-TAA-ATAATAATTTT-TTTTC--TCT------------AA---AAA--TACAGCATAAGGTTATAAAGATCAGAAA-AATGTC------CAG--G--TATCCCAACTAGCAGTGGACAAC-CACTCCACGACCAAACTGCAGTAAATTCCAACCATATATTTTATCTT-GAAACTCACTAAAATTCAACATTCGGTGTTT----TTTCTTT-CATTTT-TTCT-AGGTA-A-GACTCA------CACCAGCAGG---GGAACATCCCTCGATCCCACACTGATGTAATTTACAACCA-C------------TTC-CCTCTAAAACTTACTAGAATGAAGAATTTACTT-A--T-TAAG-----ATATGAAAA-----ATGTTTGGGAGAGGTA--C--CC-TACCCCAACCAGCCGGGG---A---T-TCC-C-CTGA-GGGCAACGAGTGTCA-TTCTtctcagtactcacagtgcatgacatgctgggtttgaaactcaagggtagttcaatttatacgatacattttatagtttaataaaaacgtataaaagttacaaaatattcgggagtaaataataattttttttctctaaaaatacagcataaggttataaagatcagaaaaatgtccaggtatcccaactagcagtggacaaccactccacgaccaaactgcagtaaattccaaccatatattttatcttgaaactcactaaaattcaacattcggtgttttttctttcattttttctaggtaagactcacaccagcaggggaacatccctcgatcccacactgatgtaatttacaaccacttccctctaaaacttactagaatgaagaatttacttattaagatatgaaaaatgtttgggagaggtaccctaccccaaccagccggggattcccctgagggcaacgagtgtcattcttgct
gi|5 : catacatctgttattctaaaagacactcactagaatgcagaatttgatgttttttaatatcgttttattttacagggcagggtttggggtgcatgccgccactagctcaatccaacactcttcatcatgttttaactcgcagtgcatgtggttttgggtttaaaatccggttcttaatacatctgatagttgttaaaatattgaacgaccacgaccaccaccgccccccccccccccccccctcttcctcccctttaattagctagaatagagcatttggtctgt-CCA----AC-AT-TC-TCCCTGACGTTT-AACTC-GCAG----AG---CATGA-------GGT-------TCTGG------GTTTGAGAT-------CC-GG-TT-CTTAATACATGTGAT---AG---CTGT--T-----------AA---AA--C------TA------GCAA-----------------------------------AGTAAA----TAGCAAC-CATTCCCCC-----TT------T-TA--ACC---AA------CTAGAATAGTGCATTTGGTTTTTAGAATATAAAAA--ATCCAG-AGGtgct
gi|5 : TCGCAGAGCATGAGGTTCTGGGTTTGAGATCCGGT------TC-------TTAATACATGTGATAGCT----------GT-TAAAACTAGCAAA-------------G-TAA-ATAGCAACCAT-TCCCCCTTTT---AA----C-CAACTAGAA--TAGTGCATTTGGTTTTTAGAAT-ATAAA-AAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCccagccgcctactccaaccaacagtgaacaccacactctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaacGTAAATAGCAACCA-T------------TCC-CCCTTTTAACCAACTAGAATAGTGCATTTGGTT-T--T-TAGA-----ATATAAAAA-------ATCC---AGAGGCCAGCCGCC-TACTCCAACCAACAGTGA---A---C-ACCACACTtctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|5 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaaAGAATATAAAAAATCCAGAGGCCAGCCGCCTACTCCAACCAACAGTGAACACCACACTCTCTCAGTGGTTACAGTGTAGGACATACCGGGTTTAAAATCCAGTGGAGGTTCACTGTATTTGATACATGTTACAGTTTAATAAAAACTTGTAAAAGCCACACAC---TATTCGGGAG-TAA-ATAACAATCTT-TTTGC--TTT---AAAACTTGCAA---AAA--TACAGCATAACGTTTTTAAGATCACAAA-AGTTTC------CAG--G--AACCCCCACCAGCAGGGGACAAT-CCCTCCAAGACCAAACTGCAATAAATGACACTCATATCTTTTATCCTATAAACTCACTAAAATTCGGTAATTGATGTTT----TCTC-TATAATTTT-TTCCGGGGTA-ATCCCCCGTAACATCACTAGCAAG---GG-ACAC-CCCC-CTTCCACA--GGTGT-------------------------------------AACTAACTAGAATGAAGTACTTGCTT-A--T-TAAG-----ATctctcagtggttacagtgtaggacataccgggtttaaaatccagtggaggttcactgtatttgatacatgttacagtttaataaaaacttgtaaaagccacacactattcgggagtaaataacaatctttttgctttaaaacttgcaaaaatacagcataacgtttttaagatcacaaaagtttccaggaacccccaccagcaggggacaatccctccaagaccaaactgcaataaatgacactcatatcttttatcctataaactcactaaaattcggtaattgatgttttctctataattttttccggggtaatcccccgtaacatcactagcaagggacaccccccttccacaggtgtaactaactagaatgaagtacttgcttattaagatttccgattattctg
gi|6 : ccaacattctccctgacgtttaactcgcagagcatgaggttctgggtttgagatccggttcttaatacatgtgatagctgttaaaactagcaaagtaaatagcaaccattcccccttttaaccaactagaatagtgcatttggtttttAG----TA---C-TG--------GGT-------T-TAAAACCC-ATGGGAAGT-------TTTGA-TTATTTAA-ACATTCTAT---TT---TTTT-----------------------C-TTTCTTAAAAGTCACAAA-A-T-A-----------------TTGGTCCCAGGAGTAAA------ACAAC-CAT-----G-----TT---------ATCATA---AAATCTTCTTATAATGCAGCATTTGGTATATAAAATATCAAAATGTTCttccgattattctg
gi|6 : atgaAGTAAA--ACAACCATGT----TATCATAAAATCTTCTTATAATGCAGCATTTGGTATATAAAATATC-AA-AATGTT----C-AAACA-A-CCCAC-TCA-TCCAATAGCGGGAGAAG-ATA--CATC-CTCATACACTaaacaacccactcatccaatagcgggagaagatacatcctcatacactatctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atgaagtactgggtttaaaacccatgggaagttttgattatttaaacattctatttttttctttcttaaaagtcacaaaatattggtcccaggGGAGGCA-GGAGGACCGGCCCAACCCC-AAT-GTTCGGGGGAGGGGGGGGGGGGG-----GGG-GGG-GGGAGCATATAGGCCTACTTTGCCCC--CATCCCACAATATTTTCATAAAAATGTCTGGAGGTCAC-AAAATAGAAAATCAACTAAACATCTGGAATAAATGACA-A-C-ATA-----TA--T-TTT-T--CAT--AAAA---ACTCCGTAGAATG-CAGCATTTGTTGTTTGA-A-A-TA----T-C--A---AA--A-----CTTT-CCAGTAT--AAGACCC------CG-----TACTG----CCACCAGCCTTC---------T-TC-----AC-AC-TC-atctcctcaggttgcctccctatccccctaataattgaaacgctcctacgcccttgtatactgaataatatgttgacctttccattagagtatctgtgatgtcagcataagtaacttataagttgatggcaggacgaagcagtaactggctttttaagctagttagtcacttactgatgttgtcataatcatcggaataagtgacttaataaagatgctggtgtcaacataatgagtgatgtaagcacatgtaaataatttcatgtaggaa
gi|7 : atattaacatctattataggcgtaAT---TT---TCAT--A-----------AA---AA--T-GTC--TGGAGGTCACAAA-A-T-AGAAAATCAACTAAACATCTGG-------AATAAA----TGACAACATAT-----A-----TT------T-T-TCATA---AAAACTCCGTAGAATGCAGCATTTGTTGTTTGAAATATCAAAACTTTCCAGTATAAG-----------A-C-CCCGTACTG---C-C----------------------ACCAG------------CC----------T-TCTTC---ACACTCATTAGAATGCAGCATTTGGTGTTTTCAATAT-ATTTTTTTACAGCA-----GCAGG----GGGAG-GGGTGCGTG---CC-ACCACTAGattagaatgcagcatttggtgttttcaatatatttttttacagcagcagggggaggggtgcgtgccaccactag
gi|8 : atattaacatctattataggcgtaggaggcaggaggaccggcccaaccccaatgttcgggggaggggggggggggggggggggggagcatataggcctactttgcccccatcccacaatT--AAAACTCACTCACTTAAATA-CAGCATTT-GTTTTTTA-A-A-TA----T-A--
gi|8 : ACTCACTTAAATACAGCATTTGTTT-T--T-TAAATATATATATATATA-----TTTTT--GGAAAAGTC--T--CC-tatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtagtaaataacaaccataaattgtttgtatcccccaaaaaactcacaataatgcagcttttgttgtttaagatataaaaaaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactc-TC-TCCCTCACATTTTGGCTC-ACAGAACCTGAGTCACCG-------GAT-------T-TGAAACCT-GTT-GACGCCGGCGGTTT-GC-TT-TTTAATATATTTGAT---ATGCGTGCT--TGCGTTTTAAAAAA---AA--T-ATT--CAAAAAACACAAA-A-TGA-------------------GT-------AGTAAA----TAACAAC-CAT-----AAATTGTT------TGTATCCCCCAAAAAACTCACAATAATGCAGCTTTTGTTGTTTAAGATATAAAAActcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtagtaaataacaaccataaattgtttgtatcccccaaaaaactcacaataatgcagcttttgttgtttaagatataaaaaaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagTTTTAAAAAAAATATTCAAAAAACAC-AAAATG---------------A---GTAGTAAATAACA-ACC-ATAAATTGTT--TGTAT-C--CCCCAAAAA---ACTCACAATAATG-CAGCTTTTGTTGTTTAA-G-A-TA----T-A--A---AA--AAATGTCTCT-CT---GT--GGGA-CC------CA-----TACTC----CTACCAGCaatgtctctctgtgggacccatactcctaccagcaagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|8 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgGTAAATAACAACCA-TAAATTGTTTGTATCC-CCCAAAAAACTCACAATAATGCAGCTTTTGTTG-T--T-TAAG-----ATATAAAAAAATGTCTCTCTGTGGGA---C--C--CA-TACTCCTACCAGCAAGGGTGTA---T-TCC-aagggtgtattcctctgtttgcccatcgccccaataattgaaacat
gi|9 : taaaactcactcacttaaatacagcatttgttttttaaatatatatatatatatttttggaaaagtctccctcacattttggctcacagaacctgagtcaccggatttgaaacctgttgacgccggcggtttgctttttaatatatttgatatgcgtgcttgcgttttaaaaaaaatattcaaaaaacacaaaatgagtaA-----TCAA----ACATCTGGAGTAATTGACA-A-CAATG-----TT--T-TA--T--CCT--GAGA---ACTAACCAAGATG-CAGCATTTG--ATTTTA-AGA-TA----T-A--A---AA--A-----TGTT-CC--GGT---GGA--C------CA-----TACCC----CCGCCAG-----------------CG----ACAACATCATCTCTCACATTCT--CTC--CA-----TC---TAAAT-------GG-----------GAAACCC-G---GAGG-----------------------AGATTTAA---------------T-----------AAT--AA--C-GTT--TAA-----ACAAA-A-T-A-----------------TTGA-------TGTAAA----TTACGAC---T-----A-----TT------T-T-------------TTTCCTAAAATTCA--ATATGATA--TAAGATATCAAAA-ATTCCAG-GGGAG-----------ACCTCCCATAC-----CTCAG-------------------Atctgtttgcccatcgccccaataattgaaacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ACTTAATAAGTTGACTTCCTAGTTGTTTATTTATGATGTCGGCATCAGTCATCAGTAATAATTTGGTGTCCTGACGAGGAACATATTGACTGTTTTACCCGGGTAGTCACTTACTGGTGTTCTATTAATCATTAATAAATACAATGCTGTCAATATAATGAGTGAGATGTTTACATAATACATTTCTGATTTCGATAAGGAAGTGGCTATCTGACTATCAGGTTGACAGAAATATGCCAACATAAAACATCAAGATTTTATTCTTCTTAATATCGAATATTATCAAAA
Unaligned ( gi|18 ): AGTGATTAACAAGTTGATATTAAAACAAAGAACAGCTGCATTGGTATTTACATCACTTACTGTTGTGGCCATAATCACTGATGTAAGTGAATAATAAAGACGATTATGTTGACGTAATGTATAAACTGTGATCATATATGCTTATTATGTCACGTCAGTGAAGTGTTAGCATT
Unaligned ( gi|21 ): TACTGAATAATATGTTGAATTTTCCAGCTGATTATCTGTGATGTCGACATCAGTAACTTATAAGTTGGTGGCAGGACAGAGCACTAACTGACTATTTTAGCTTGTTAGTCACTTACTGATGTTGCCATAATCATCTGAA
Unaligned ( gi|28 ): CTTAGTGAGACCTCAGGGCAAAACATACTTGATTGGAACCCATTGGAATTTTTTTTGTTTGA