lowQualScore : 1 11
lowQualScore : 0 3 22 11 11 33 0 00 1 222222 22 0
lowQualScore : . . .. .. .. .. . .. . ...... .. .
lowQualScore : 8 2 33 44 99 99 8 55 6 333333 22 9
consensus : GAGGCAT-CACCTATAA--GTCC-GAT--ATTTTT-AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
Reference ( gi|24 ) : GAGGCAT-CACCTATCA--GTCC-GAT--ATTTTT-AGG-ATGGAATATTTAA-CA------C--TGATTATTT-AAATG
gi|33 : GAGGCAT-CACCTATAA--GTCC-GAT--ATTTTT-AGG-ATGAAATATTTAA-TA------C--TGATTATTT-
gi|20 : aaGAGGCAT-GACCTATCA--ATCC-GAT--ATTTT--AGG-ATAAAGTATTTAA-CA------C--TGATTATTT-AAATG
gi|7 : aGAGGCAT-GACTTATAA--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
gi|21 : aaaGAGGCAT-CACCTATAA--GTCG-GAT--ATTTTT-AGA-ATAAAATATTTAA-CA------T--TGATTATTT-AAAct
gi|3 : aaGAGGCAT-CACCTATAA--GTCT-GAT--ATTTTT-AGGAAAAAAATATTTAA-CA------C--TGATTATTT-AAAT
gi|1 : aaaGAGGTAT-GACCTATAA--GTCC-GAT--ATTTTT-AGG-ATAAAATATTTAA-CACTCAATC--TGATTATTT-AAATGtc
gi|2 : aaaGAGGCAT-GACCTATAG--GTCC-GAT--ATTTTT-AGG-ATGAAATATTTAA-CA------A--TGCTTTTTT-AAATGtt
gi|19 : agaGAGGCAT-CAC-TATAA--GTCC-GAT--ATTTTC-AGG-ATAAAATATCTAA-CA------C--TGATTATTT-CAATcta
gi|44 : aaGAGGCAT-CACCTATAA--GTCC-GAT--ATTTTT-AGG-ATAACATATTTAA-CA------C--CGATT
gi|8 : aGAGGCAT-TACTTATTATAGTCA-GAT--ATTTTT-AGG-ATAAAATATTTAA-CA------T--GGATTATTT-AAATG
gi|42 : GAGGCAT-CACCTTTAA--GTCC-GAT--ATTTTT-AGG-ATAAAATATTTAA-CA------C--TGc
gi|22 : aaaGAGGTAT-CACCTATAT--GTCC-GAT--ATTTTT---G-ATGAAATATCTAA-CA------C--TGATTATCT-AAATtg
gi|13 : aaaGAGGCAT-CACCTATAA--GTCG-GAT--ATTTT--AGG-ATTAAACATTTTA-CA------C--TGATTATTT-AAAT
gi|38 : aaGAGGCAT-CACCTATTA--ATCC-GAT--ATTTTT-AGG-ATA-------TAA-CA------C--TGTTTATTT-AAATGac
gi|25 : aaGAGTCAT-CACCTATAA--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-AA------C--TGATTATTT-TAA
gi|9 : aaGAGGCAT-CTCCGATAA--GGTC-GAT--ATTTTT-AGG-ATAAAGTATTTAA-CA------C--TGATTATTT-CAATG
gi|17 : aaGAGGCAT-CACCTATTA--GTCA-GAT--A-TTTT-AGA-ATGAGCTATTTAA-CA------C--TGATGATTT-AATTGc
gi|16 : aaGAGGCAT-CACATACAA--GTCG-GAT--ACTTT--AGG-ATGAAAAATTTAG-CA------C--TGATTATTT-AAATG
gi|18 : aGAGGTAT-CACCTATAA--GTCC-GAT--ATTATT-TGT-ATAAAATAGTTAA-CA------C--TGATTGTTT-AAATc
gi|6 : aaGAGGTAT-CACGTAATA--GTCT-GAT--ATTTTA-AGG-AGAAAATATTAAA-CA------C--TGATTATTT-AAATG
gi|31 : caaGAGCCAC-CACCTGTAA--GTCC-GAT--ATTTT--AAG-ATAAAATATTTAA-CA------C--TGACTATTA-AAATt
gi|14 : GAGGCAT-CACGTGCAA--GTCTTGAT----TTTT-AGC-ATAAAATATTTAA-CA------C--CGATTATTT-AAATG
gi|5 : aaGAGGCAT-CCCCCATAA--GCCC-GAT--ATAATA-AGG-ATGAAATATTAAA-CA------C--TGATAAGTT-AAATGt
gi|40 : aaaGAGGCAT-GGCCTAT----------AT--ATTTT--AGG-ATAAAATATTTAA-GA------C--TGATTATTT-AAATGc
gi|36 : cGAGGCAT-CACC------------GGT--ATTTTTTAGG-ATAAATTATTCAA-CA------C--TGATTATTT-AAATGc
gi|10 : agaGACGCAT-CACCTGTAA--GTTC-GATT-GTTTCT--GA-ATAAACTATTTAA-CA------C--TGATTATCT-GAATGc
gi|32 : aaGAGGCAT------ATAA--GTC--AAT--ATTTTT-TGG-GTAGAATATTTGA-CA------C--TGACTATTT-AAATGc
gi|11 : aaaGAGGCATTCGGCTATAA--GTCA-GAT--ATTTTT-CGG-ATGAAATGTTGGA-TA------C--TGATT-TTT-Ac
gi|51 : caaaGAGGCTT-CACCTACAA--GTC------------------ATGAAATATTAAA-CA------C--TGATTATTC-AAATGcaa
gi|46 : GAGGCAT-TATCTATCA--GTTT-GAT--ATTTTT-AG---------ACT-----A------C--TGATAATTC-AAATG
gi|52 : aaGAGGCAT-CACCTATAA--GT-------------T-A-------AATATTTAA-CA------T--TGATTATCT-AAATGct
gi|4 : GAGACAT-CGACTAGAA--ATCC-GTT--AAGTTT-AGG-ATAAAATATTGAA-CA------C--GGA-TATTTCAAATGct
gi|28 : aaaGAGGCAT-CGCTTATAATTGTCT-GAT--A-------GG-ATGAACTATTTAA-CC------C--TCATTTTTT-TAATGct
gi|50 : aaaGATGCGT-CACCTGTAA--GTCC-AA------------------AATATCTAA-CA------T--TGATTTTTT-AAATG
gi|43 : aGAGGCAT-CACTTACAA--ATCG-GATACATTGTT---G-ATAAAACTTTAAA-TA------A--TGATTATc
gi|27 : AGGCAT-CACCTATCA--GTCC-GAT--ATTTTT-AGG-ATGAAATATTTTA-CA------C--TGATTA-TT-AAATG
gi|30 : aAGGAAT-CACCGATAA--ATCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTA-TT-AAATG
gi|26 : AGGCAT-GACCTATAA--GTCC-GAT--AATTTT-AAG-GTAAACTATTTAA-CA------C--TGATTGTTT-GAc
gi|48 : aaaAGACAT-GACCTA-AA--GTCC-GAT--ATTTT--AGG-ATGAAATATTTAA-CA------C--TGAT
gi|47 : agaAGGTAT-CACCTATAA--GTCC-AAT--ATTTTT-AGG-ATAAAATATCTAA-CA------
gi|15 : aaGGCAT-GACCTATAA--GTCT-GAT--ATTTTT-AGG-ATAAAATATTTAA-CG------C--TGATTATTT-AAATGatac
gi|41 : gcGGCAT-CACCGGTAA--GTCT-GAT--ATTTTT-AAG-ATAAAATATTTAT-CA------C--TGATc
gi|12 : aaagtGACAT-CACCTACGA--GTCT-GGT--CATTTT-AAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATG
gi|23 : CAT-CACCTATAA--GTCG-GAC--AGTTTT-AAG-ATA-AATACTTAA-CA------C--TGATAATTT-AAATGtt
gi|35 : agacaAT-CACCTATAA--GTCC-GAT--ATGTTT-AGA-TTAAAATATTTAG-CA------T--TGGTTGTTT-AAATG
gi|45 : AT-CACCTTTAA--ATTC-GAT--ATTTTT-AGG-ATAAAATAGTTAA-CA------G--CGAGTGTTT-AAc
gi|34 : T-CACCCATGC--GTCC-GAT--TATTTT-AGG-ATAAACTATATCA-CA------C--CGATTATTC-AA
gi|29 : aagttT-CACCTACGA--GTCT-GGT--CATTTT-AAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATGc
gi|37 : TCC-GAT--ATTTTA-AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATtt
gi|49 : actttacagaggcaAT--CTTTAT-AGG-ACGAAATATTTAA-CA------C--TGCTTATTT-AAATG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|39 ): AAAGTGACATTAACTTTAAGTCCATCTTTTTTTTTATGATAAAATATTTTACAATGA
Unaligned ( gi|53 ): AAAGGGGCATAGCCTACAAGTCTGATAGTTTTAGAATAAAATAGTTA
Alignments
lowQualScore : 0 0 0 11 11 11 44 0 1 222222 22 0
lowQualScore : . . . .. .. .. .. . . ...... .. .
lowQualScore : 8 8 8 11 88 88 88 8 6 333333 22 9
consensus : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
Reference ( family-4368 ) : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
gi|1 : GAGGTAT-GACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CACTCAATC--TGATTATTT-AAATG
gi|10 : aaaGACGCAT-CACCTGT-A-A--GTTC-GATT-GTTTC-T-GA-ATAAACTATTTAA-CA------C--TGATTATCT-GAATGtt
gi|11 : aaGAGGCATTCGGCTAT-A-A--GTCA-GAT--ATTTT-TCGG-ATGAAATGTTGGA-TA------C--TGATT-TTT-Ac
gi|12 : caaaGACAT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATGcaa
gi|13 : GAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT--AGG-ATTAAACATTTTA-CA------C--TGATTATTT-AAATtt
gi|14 : aaGAGGCAT-CACGTGC-A-A--GTCTTGAT----TTT-TAGC-ATAAAATATTTAA-CA------C--CGATTATTT-AAATGac
gi|15 : aaGGCAT-GACCTAT-A-A--GTCT-GAT--ATTTT-TAGG-ATAAAATATTTAA-CG------C--TGATTATTT-AAATGt
gi|16 : gcGAGGCAT-CACATAC-A-A--GTCG-GAT--ACTTT--AGG-ATGAAAAATTTAG-CA------C--TGATTATTT-AAATGc
gi|17 : aGAGGCAT-CACCTAT-T-A--GTCA-GAT--ATTTT--AGA-ATGAGCTATTTAA-CA------C--TGATGATTT-AATTGc
gi|18 : aaGAGGTAT-CACCTAT-A-A--GTCC-GAT--ATTAT-TTGT-ATAAAATAGTTAA-CA------C--TGATTGTTT-AAAT
gi|19 : aaGAGGCAT-CAC-TAT-A-A--GTCC-GAT--ATTTT-CAGG-ATAAAATATCTAA-CA------C--TGATTATTT-CAAT
gi|2 : aaGAGGCAT-GACCTAT-A-G--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-CA------A--TGCTTTTTT-AAATG
gi|20 : agaGAGGCAT-GACCTAT-C-A--ATCC-GAT--ATTTT--AGG-ATAAAGTATTTAA-CA------C--TGATTATTT-AAATGcta
gi|21 : aGAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT-TAGA-ATAAAATATTTAA-CA------T--TGATTATTT-AAA
gi|22 : aaGAGGTAT-CACCTAT-A-T--GTCC-GAT--ATTTT-T--G-ATGAAATATCTAA-CA------C--TGATTATCT-AAAT
gi|23 : aaaCAT-CACCTAT-A-A--GTCG-GAC--AGTTT-TAAG-AT-AAATACTTAA-CA------C--TGATAATTT-AAATG
gi|24 : agacaGAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGGAATATTTAA-CA------C--TGATTATTT-AAATG
gi|25 : GAGTCAT-CACCTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-AA------C--TGATTATTT-TAA
gi|26 : aaAGGCAT-GACCTAT-A-A--GTCC-GAT--AATTT-TAAG-GTAAACTATTTAA-CA------C--TGATTGTTT-GA
gi|27 : aaaAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTTA-CA------C--TGATTA-TT-AAATG
gi|28 : aGAGGCAT-CGCTTAT-A-ATTGTCT-GAT--A-------GG-ATGAACTATTTAA-CC------C--TCATTTTTT-TAATG
gi|29 : aaaT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATG
gi|3 : GAGGCAT-CACCTAT-A-A--GTCT-GAT--ATTTT-TAGGAAAAAAATATTTAA-CA------C--TGATTATTT-AAATtt
gi|30 : aaaAGGAAT-CACCGAT-A-A--ATCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTA-TT-AAATGtc
gi|31 : GAGCCAC-CACCTGT-A-A--GTCC-GAT--ATTTT--AAG-ATAAAATATTTAA-CA------C--TGACTATTA-AAATc
gi|32 : GAGGCAT------AT-A-A--GTC--AAT--ATTTT-TTGG-GTAGAATATTTGA-CA------C--TGACTATTT-AAATG
gi|33 : aaaGAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-TA------C--TGATTATTT-c
gi|34 : aaT-CACCCAT-G-C--GTCC-GAT--TATTT-TAGG-ATAAACTATATCA-CA------C--CGATTATTC-AA
gi|35 : aagttAT-CACCTAT-A-A--GTCC-GAT--ATGTT-TAGA-TTAAAATATTTAG-CA------T--TGGTTGTTT-AAATGc
gi|36 : GAGGCAT-CACC--------------GGT--ATTTTTTAGG-ATAAATTATTCAA-CA------C--TGATTATTT-AAATGc
gi|37 : agaTCC-GAT--ATTTT-AAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATc
gi|38 : actttacagaggcaGAGGCAT-CACCTAT-T-A--ATCC-GAT--ATTTT-TAGG-ATA-------TAA-CA------C--TGTTTATTT-AAATG
gi|4 : aaGAGACAT-CGACTAG-A-A--ATCC-GTT--AAGTT-TAGG-ATAAAATATTGAA-CA------C--GGA-TATTTCAAATG
gi|40 : aaaGAGGCAT-GGCCTAT-A-----------T--ATTTT--AGG-ATAAAATATTTAA-GA------C--TGATTATTT-AAATGct
gi|41 : cGGCAT-CACCGGT-A-A--GTCT-GAT--ATTTT-TAAG-ATAAAATATTTAT-CA------C--TGATc
gi|42 : aaagtGAGGCAT-CACCTTT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TG
gi|43 : aaaGAGGCAT-CACTTAC-A-A--ATCG-GATACATTGT-T--G-ATAAAACTTTAAA-TA------A--TGATTATtg
gi|44 : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAACATATTTAA-CA------C--CGATT
gi|45 : aAT-CACCTTT-A-A--ATTC-GAT--ATTTT-TAGG-ATAAAATAGTTAA-CA------G--CGAGTGTTT-AA
gi|46 : GAGGCAT-TATCTAT-C-A--GTTT-GAT--ATTTT-TAG---------ACT-----A------C--TGATAATTC-AAATG
gi|47 : aaAGGTAT-CACCTAT-A-A--GTCC-AAT--ATTTT-TAGG-ATAAAATATCTAA-CA------ct
gi|48 : aaAGACAT-GACCTA--A-A--GTCC-GAT--ATTTT--AGG-ATGAAATATTTAA-CA------C--TGATatac
gi|49 : agaAT--CTTTA-TAGG-ACGAAATATTTAA-CA------C--TGCTTATTT-AAATG
gi|5 : agaggcGAGGCAT-CCCCCAT-A-A--GCCC-GAT--ATAAT-AAGG-ATGAAATATTAAA-CA------C--TGATAAGTT-AAATGcta
gi|50 : aaaGATGCGT-CACCTGT-A-A--GTCC-------------------AAAATATCTAA-CA------T--TGATTTTTT-AAATGc
gi|51 : aGAGGCTT-CACCTAC-A-A--GTC------------------ATGAAATATTAAA-CA------C--TGATTATTC-AAATGc
gi|52 : GAGGCAT-CACCTAT-A-A--GTT---------------------AAATATTTAA-CA------T--TGATTATCT-AAATG
gi|53 : GGGGCAT-AGCCTAC-A-A--GTCT-GAT--AGTTT-TAGA-ATAAAATAGTTAct
gi|6 : aaaGAGGTAT-CACGTAA-T-A--GTCT-GAT--ATTTT-AAGG-AGAAAATATTAAA-CA------C--TGATTATTT-AAATG
gi|7 : caaGAGGCAT-GACTTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATGt
gi|8 : aaaGAGGCAT-TACTTATTATA--GTCA-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------T--GGATTATTT-AAATGct
gi|9 : GAGGCAT-CTCCGAT-A-A--GGTC-GAT--ATTTT-TAGG-ATAAAGTATTTAA-CA------C--TGATTATTT-CAATGc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|39 ): AAAGTGACATTAACTTTAAGTCCATCTTTTTTTTTATGATAAAATATTTTACAATGA
Alignments
lowQualScore : 0 0 0 11 11 11 44 0 1 222222 22 0
lowQualScore : . . . .. .. .. .. . . ...... .. .
lowQualScore : 8 8 8 11 88 88 88 8 6 333333 22 9
consensus : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
Reference ( family-4368 ) : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
gi|1 : GAGGTAT-GACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CACTCAATC--TGATTATTT-AAATG
gi|10 : aaaGACGCAT-CACCTGT-A-A--GTTC-GATT-GTTTC-T-GA-ATAAACTATTTAA-CA------C--TGATTATCT-GAATGtt
gi|11 : aaGAGGCATTCGGCTAT-A-A--GTCA-GAT--ATTTT-TCGG-ATGAAATGTTGGA-TA------C--TGATT-TTT-Ac
gi|12 : caaaGACAT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATGcaa
gi|13 : GAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT--AGG-ATTAAACATTTTA-CA------C--TGATTATTT-AAATtt
gi|14 : aaGAGGCAT-CACGTGC-A-A--GTCTTGAT----TTT-TAGC-ATAAAATATTTAA-CA------C--CGATTATTT-AAATGac
gi|15 : aaGGCAT-GACCTAT-A-A--GTCT-GAT--ATTTT-TAGG-ATAAAATATTTAA-CG------C--TGATTATTT-AAATGt
gi|16 : gcGAGGCAT-CACATAC-A-A--GTCG-GAT--ACTTT--AGG-ATGAAAAATTTAG-CA------C--TGATTATTT-AAATGc
gi|17 : aGAGGCAT-CACCTAT-T-A--GTCA-GAT--ATTTT--AGA-ATGAGCTATTTAA-CA------C--TGATGATTT-AATTGc
gi|18 : aaGAGGTAT-CACCTAT-A-A--GTCC-GAT--ATTAT-TTGT-ATAAAATAGTTAA-CA------C--TGATTGTTT-AAAT
gi|19 : aaGAGGCAT-CAC-TAT-A-A--GTCC-GAT--ATTTT-CAGG-ATAAAATATCTAA-CA------C--TGATTATTT-CAAT
gi|2 : aaGAGGCAT-GACCTAT-A-G--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-CA------A--TGCTTTTTT-AAATG
gi|20 : agaGAGGCAT-GACCTAT-C-A--ATCC-GAT--ATTTT--AGG-ATAAAGTATTTAA-CA------C--TGATTATTT-AAATGcta
gi|21 : aGAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT-TAGA-ATAAAATATTTAA-CA------T--TGATTATTT-AAA
gi|22 : aaGAGGTAT-CACCTAT-A-T--GTCC-GAT--ATTTT-T--G-ATGAAATATCTAA-CA------C--TGATTATCT-AAAT
gi|23 : aaaCAT-CACCTAT-A-A--GTCG-GAC--AGTTT-TAAG-AT-AAATACTTAA-CA------C--TGATAATTT-AAATG
gi|24 : agacaGAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGGAATATTTAA-CA------C--TGATTATTT-AAATG
gi|25 : GAGTCAT-CACCTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-AA------C--TGATTATTT-TAA
gi|26 : aaAGGCAT-GACCTAT-A-A--GTCC-GAT--AATTT-TAAG-GTAAACTATTTAA-CA------C--TGATTGTTT-GA
gi|27 : aaaAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTTA-CA------C--TGATTA-TT-AAATG
gi|28 : aGAGGCAT-CGCTTAT-A-ATTGTCT-GAT--A-------GG-ATGAACTATTTAA-CC------C--TCATTTTTT-TAATG
gi|29 : aaaT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATG
gi|3 : GAGGCAT-CACCTAT-A-A--GTCT-GAT--ATTTT-TAGGAAAAAAATATTTAA-CA------C--TGATTATTT-AAATtt
gi|30 : aaaAGGAAT-CACCGAT-A-A--ATCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTA-TT-AAATGtc
gi|31 : GAGCCAC-CACCTGT-A-A--GTCC-GAT--ATTTT--AAG-ATAAAATATTTAA-CA------C--TGACTATTA-AAATc
gi|32 : GAGGCAT------AT-A-A--GTC--AAT--ATTTT-TTGG-GTAGAATATTTGA-CA------C--TGACTATTT-AAATG
gi|33 : aaaGAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-TA------C--TGATTATTT-c
gi|34 : aaT-CACCCAT-G-C--GTCC-GAT--TATTT-TAGG-ATAAACTATATCA-CA------C--CGATTATTC-AA
gi|35 : aagttAT-CACCTAT-A-A--GTCC-GAT--ATGTT-TAGA-TTAAAATATTTAG-CA------T--TGGTTGTTT-AAATGc
gi|36 : GAGGCAT-CACC--------------GGT--ATTTTTTAGG-ATAAATTATTCAA-CA------C--TGATTATTT-AAATGc
gi|37 : agaTCC-GAT--ATTTT-AAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATc
gi|38 : actttacagaggcaGAGGCAT-CACCTAT-T-A--ATCC-GAT--ATTTT-TAGG-ATA-------TAA-CA------C--TGTTTATTT-AAATG
gi|4 : aaGAGACAT-CGACTAG-A-A--ATCC-GTT--AAGTT-TAGG-ATAAAATATTGAA-CA------C--GGA-TATTTCAAATG
gi|40 : aaaGAGGCAT-GGCCTAT-A-----------T--ATTTT--AGG-ATAAAATATTTAA-GA------C--TGATTATTT-AAATGct
gi|41 : cGGCAT-CACCGGT-A-A--GTCT-GAT--ATTTT-TAAG-ATAAAATATTTAT-CA------C--TGATc
gi|42 : aaagtGAGGCAT-CACCTTT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TG
gi|43 : aaaGAGGCAT-CACTTAC-A-A--ATCG-GATACATTGT-T--G-ATAAAACTTTAAA-TA------A--TGATTATtg
gi|44 : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAACATATTTAA-CA------C--CGATT
gi|45 : aAT-CACCTTT-A-A--ATTC-GAT--ATTTT-TAGG-ATAAAATAGTTAA-CA------G--CGAGTGTTT-AA
gi|46 : GAGGCAT-TATCTAT-C-A--GTTT-GAT--ATTTT-TAG---------ACT-----A------C--TGATAATTC-AAATG
gi|47 : aaAGGTAT-CACCTAT-A-A--GTCC-AAT--ATTTT-TAGG-ATAAAATATCTAA-CA------ct
gi|48 : aaAGACAT-GACCTA--A-A--GTCC-GAT--ATTTT--AGG-ATGAAATATTTAA-CA------C--TGATatac
gi|49 : agaAT--CTTTA-TAGG-ACGAAATATTTAA-CA------C--TGCTTATTT-AAATG
gi|5 : agaggcGAGGCAT-CCCCCAT-A-A--GCCC-GAT--ATAAT-AAGG-ATGAAATATTAAA-CA------C--TGATAAGTT-AAATGcta
gi|50 : aaaGATGCGT-CACCTGT-A-A--GTCC-------------------AAAATATCTAA-CA------T--TGATTTTTT-AAATGc
gi|51 : aGAGGCTT-CACCTAC-A-A--GTC------------------ATGAAATATTAAA-CA------C--TGATTATTC-AAATGc
gi|52 : GAGGCAT-CACCTAT-A-A--GTT---------------------AAATATTTAA-CA------T--TGATTATCT-AAATG
gi|53 : GGGGCAT-AGCCTAC-A-A--GTCT-GAT--AGTTT-TAGA-ATAAAATAGTTAct
gi|6 : aaaGAGGTAT-CACGTAA-T-A--GTCT-GAT--ATTTT-AAGG-AGAAAATATTAAA-CA------C--TGATTATTT-AAATG
gi|7 : caaGAGGCAT-GACTTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATGt
gi|8 : aaaGAGGCAT-TACTTATTATA--GTCA-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------T--GGATTATTT-AAATGct
gi|9 : GAGGCAT-CTCCGAT-A-A--GGTC-GAT--ATTTT-TAGG-ATAAAGTATTTAA-CA------C--TGATTATTT-CAATGc
blockSeqs : TT TT AC TT T . TA
blockSeqs : . C T T T . TA
blockSeqs : . A . T . . .
blockSeqs : . T . T . . .
blockSeqs : . G . T . . .
blockSeqs : . T . T . . .
blockSeqs : . G . T . . .
blockSeqs : . A . C . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . G . T . . .
blockSeqs : . C . T . . .
blockSeqs : . G . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . T . T . . .
blockSeqs : . T . T . . .
blockSeqs : . T . A . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . T . . .
blockSeqs : . T . T . . .
blockSeqs : . C . T . . .
blockSeqs : . G . A . . .
blockSeqs : . C . T . . .
blockSeqs : . C . A . . .
blockSeqs : . T . T . . .
blockSeqs : . C . T . . .
blockSeqs : . C . . . . .
blockSeqs : . C . . . . .
blockSeqs : . C . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . . . . .
blockSeqs : . C . . . . .
blockSeqs : . A . . . . .
blockSeqs : . C . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : ******
originalCons : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
finalCons : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|39 ): AAAGTGACATTAACTTTAAGTCCATCTTTTTTTTTATGATAAAATATTTTACAATGA
Alignments
lowQualScore : 0 0 0 11 11 11 44 0 1 222222 22 0
lowQualScore : . . . .. .. .. .. . . ...... .. .
lowQualScore : 8 8 8 11 88 88 88 8 6 333333 22 9
consensus : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
Reference ( family-4368 ) : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATG
gi|1 : GAGGTAT-GACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CACTCAATC--TGATTATTT-AAATG
gi|10 : aaaGACGCAT-CACCTGT-A-A--GTTC-GATT-GTTTC-T-GA-ATAAACTATTTAA-CA------C--TGATTATCT-GAATGtt
gi|11 : aaGAGGCATTCGGCTAT-A-A--GTCA-GAT--ATTTT-TCGG-ATGAAATGTTGGA-TA------C--TGATT-TTT-Ac
gi|12 : caaaGACAT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATGcaa
gi|13 : GAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT--AGG-ATTAAACATTTTA-CA------C--TGATTATTT-AAATtt
gi|14 : aaGAGGCAT-CACGTGC-A-A--GTCTTGAT----TTT-TAGC-ATAAAATATTTAA-CA------C--CGATTATTT-AAATGac
gi|15 : aaGGCAT-GACCTAT-A-A--GTCT-GAT--ATTTT-TAGG-ATAAAATATTTAA-CG------C--TGATTATTT-AAATGt
gi|16 : gcGAGGCAT-CACATAC-A-A--GTCG-GAT--ACTTT--AGG-ATGAAAAATTTAG-CA------C--TGATTATTT-AAATGc
gi|17 : aGAGGCAT-CACCTAT-T-A--GTCA-GAT--ATTTT--AGA-ATGAGCTATTTAA-CA------C--TGATGATTT-AATTGc
gi|18 : aaGAGGTAT-CACCTAT-A-A--GTCC-GAT--ATTAT-TTGT-ATAAAATAGTTAA-CA------C--TGATTGTTT-AAAT
gi|19 : aaGAGGCAT-CAC-TAT-A-A--GTCC-GAT--ATTTT-CAGG-ATAAAATATCTAA-CA------C--TGATTATTT-CAAT
gi|2 : aaGAGGCAT-GACCTAT-A-G--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-CA------A--TGCTTTTTT-AAATG
gi|20 : agaGAGGCAT-GACCTAT-C-A--ATCC-GAT--ATTTT--AGG-ATAAAGTATTTAA-CA------C--TGATTATTT-AAATGcta
gi|21 : aGAGGCAT-CACCTAT-A-A--GTCG-GAT--ATTTT-TAGA-ATAAAATATTTAA-CA------T--TGATTATTT-AAA
gi|22 : aaGAGGTAT-CACCTAT-A-T--GTCC-GAT--ATTTT-T--G-ATGAAATATCTAA-CA------C--TGATTATCT-AAAT
gi|23 : aaaCAT-CACCTAT-A-A--GTCG-GAC--AGTTT-TAAG-AT-AAATACTTAA-CA------C--TGATAATTT-AAATG
gi|24 : agacaGAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGGAATATTTAA-CA------C--TGATTATTT-AAATG
gi|25 : GAGTCAT-CACCTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-AA------C--TGATTATTT-TAA
gi|26 : aaAGGCAT-GACCTAT-A-A--GTCC-GAT--AATTT-TAAG-GTAAACTATTTAA-CA------C--TGATTGTTT-GA
gi|27 : aaaAGGCAT-CACCTAT-C-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTTA-CA------C--TGATTA-TT-AAATG
gi|28 : aGAGGCAT-CGCTTAT-A-ATTGTCT-GAT--A-------GG-ATGAACTATTTAA-CC------C--TCATTTTTT-TAATG
gi|29 : aaaT-CACCTAC-G-A--GTCT-GGT--CATTT-TAAG-ATAAAATATTAAATTA------TTATGATTATTA-TAATG
gi|3 : GAGGCAT-CACCTAT-A-A--GTCT-GAT--ATTTT-TAGGAAAAAAATATTTAA-CA------C--TGATTATTT-AAATtt
gi|30 : aaaAGGAAT-CACCGAT-A-A--ATCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTA-TT-AAATGtc
gi|31 : GAGCCAC-CACCTGT-A-A--GTCC-GAT--ATTTT--AAG-ATAAAATATTTAA-CA------C--TGACTATTA-AAATc
gi|32 : GAGGCAT------AT-A-A--GTC--AAT--ATTTT-TTGG-GTAGAATATTTGA-CA------C--TGACTATTT-AAATG
gi|33 : aaaGAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATGAAATATTTAA-TA------C--TGATTATTT-c
gi|34 : aaT-CACCCAT-G-C--GTCC-GAT--TATTT-TAGG-ATAAACTATATCA-CA------C--CGATTATTC-AA
gi|35 : aagttAT-CACCTAT-A-A--GTCC-GAT--ATGTT-TAGA-TTAAAATATTTAG-CA------T--TGGTTGTTT-AAATGc
gi|36 : GAGGCAT-CACC--------------GGT--ATTTTTTAGG-ATAAATTATTCAA-CA------C--TGATTATTT-AAATGc
gi|37 : agaTCC-GAT--ATTTT-AAGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATc
gi|38 : actttacagaggcaGAGGCAT-CACCTAT-T-A--ATCC-GAT--ATTTT-TAGG-ATA-------TAA-CA------C--TGTTTATTT-AAATG
gi|4 : aaGAGACAT-CGACTAG-A-A--ATCC-GTT--AAGTT-TAGG-ATAAAATATTGAA-CA------C--GGA-TATTTCAAATG
gi|40 : aaaGAGGCAT-GGCCTAT-A-----------T--ATTTT--AGG-ATAAAATATTTAA-GA------C--TGATTATTT-AAATGct
gi|41 : cGGCAT-CACCGGT-A-A--GTCT-GAT--ATTTT-TAAG-ATAAAATATTTAT-CA------C--TGATc
gi|42 : aaagtGAGGCAT-CACCTTT-A-A--GTCC-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------C--TG
gi|43 : aaaGAGGCAT-CACTTAC-A-A--ATCG-GATACATTGT-T--G-ATAAAACTTTAAA-TA------A--TGATTATtg
gi|44 : GAGGCAT-CACCTAT-A-A--GTCC-GAT--ATTTT-TAGG-ATAACATATTTAA-CA------C--CGATT
gi|45 : aAT-CACCTTT-A-A--ATTC-GAT--ATTTT-TAGG-ATAAAATAGTTAA-CA------G--CGAGTGTTT-AA
gi|46 : GAGGCAT-TATCTAT-C-A--GTTT-GAT--ATTTT-TAG---------ACT-----A------C--TGATAATTC-AAATG
gi|47 : aaAGGTAT-CACCTAT-A-A--GTCC-AAT--ATTTT-TAGG-ATAAAATATCTAA-CA------ct
gi|48 : aaAGACAT-GACCTA--A-A--GTCC-GAT--ATTTT--AGG-ATGAAATATTTAA-CA------C--TGATatac
gi|49 : agaAT--CTTTA-TAGG-ACGAAATATTTAA-CA------C--TGCTTATTT-AAATG
gi|5 : agaggcGAGGCAT-CCCCCAT-A-A--GCCC-GAT--ATAAT-AAGG-ATGAAATATTAAA-CA------C--TGATAAGTT-AAATGcta
gi|50 : aaaGATGCGT-CACCTGT-A-A--GTCC-------------------AAAATATCTAA-CA------T--TGATTTTTT-AAATGc
gi|51 : aGAGGCTT-CACCTAC-A-A--GTC------------------ATGAAATATTAAA-CA------C--TGATTATTC-AAATGc
gi|52 : GAGGCAT-CACCTAT-A-A--GTT---------------------AAATATTTAA-CA------T--TGATTATCT-AAATG
gi|53 : GGGGCAT-AGCCTAC-A-A--GTCT-GAT--AGTTT-TAGA-ATAAAATAGTTAct
gi|6 : aaaGAGGTAT-CACGTAA-T-A--GTCT-GAT--ATTTT-AAGG-AGAAAATATTAAA-CA------C--TGATTATTT-AAATG
gi|7 : caaGAGGCAT-GACTTAT-A-A--GTCC-GAT--ATTTT--AGG-ATAAAATATTTAA-CA------C--TGATTATTT-AAATGt
gi|8 : aaaGAGGCAT-TACTTATTATA--GTCA-GAT--ATTTT-TAGG-ATAAAATATTTAA-CA------T--GGATTATTT-AAATGct
gi|9 : GAGGCAT-CTCCGAT-A-A--GGTC-GAT--ATTTT-TAGG-ATAAAGTATTTAA-CA------C--TGATTATTT-CAATGc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|39 ): AAAGTGACATTAACTTTAAGTCCATCTTTTTTTTTATGATAAAATATTTTACAATGA