lowQualScore : 44444444 1111 1 666666666666666666666666666666666 3333 222222 33333333 22 33 444 1 1 33 1 11 44444444444 44444444444444 1 11 1 222222222 1 1 1 1 111 1 44444444444444444 1 2 33333 1 2222 33333333333 4444 44444444444444444 888888888888 333
lowQualScore : 99999999 0000 3 5 0 666666666666666666666666666666666 5 4444 22 6 555555 4 33333333 11 44 000 6 5 5 00 7 22 6 4 44 88888888888 6 55555555555555 8 9 2 77 00 2 5 555555555 0 2 77 3 2 888 3 2 0 0 77777777777777777 0 0 88888 0 5 6 6 1 1 6666 55555555555 3 6666 99999999999999999 999999999999 666
lowQualScore : ........ .... . . . ................................. . .... .. . ...... . ........ .. .. ... . . . .. . .. . . .. ........... . .............. . . . .. .. . . ......... . . .. . . ... . . . . ................. . . ..... . . . . . . .... ........... . .... ................. ............ ...
lowQualScore : 22222222 6666 1 5 1 888888888888888888888888888888888 0 8888 88 7 222222 0 00000000 00 00 000 0 0 0 00 0 00 0 0 00 55555555555 7 55555555555555 5 2 2 44 11 8 0 444444444 8 1 22 7 4 777 3 1 7 7 77777777777777777 8 0 22222 8 2 7 7 0 7 7777 44444444444 0 6666 22222222222222222 222222222222 000
consensus : TAACAAAATA-GGTC-T-GTTT----ATGTGGCCTGAATTATCAG--AC--AG-GTCTA-GTANAA------CG----TATGTACATTGTGTAGCCATG--TATAGCGTCAGGTAGTNTCAANGGGANTTTGGGTTAAANNNNNNNNNATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAGTAAACTGGCTTATTATTGTNAAACTAACCGTATTTTACNATTAGCC-TTTT-CGTACAT-TTTGTAT----CGTNCGATATCCGGGTGACNAGTTAAT-TCCA-T--GATTTTCTTGAGATACACCTGTG-GTATGTGGTTA-NTTTTGTATANATACACG-N-----ATGGAT----ACCAAAATCTC-TGTCAGTTAGCGAAATTCCANCA-T-GCGGAAA-CGTTGTGACAAGGAGTGTATACAACATTATA-ACTTGACCA----CGA----CGTACGGTATCCGAGTGAGCACT----GTATTATGTTGTATATAGTTTAG
Reference ( gi|1 ) : TAACAAAATA-G--C-A-GTTT----ACGTGTCCTGAATTATCAG--AC--AGGGTCTG-GTATAA------CA----TATGTACATTGTATAGGCATG--GCTAGCGTCAGGTGGTGT-AATAG--TTTTGGGTTAAATAATAAGTAATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTTAATCGGTTTATTATTGTAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-TATGATT----CGTGCGATGTCTGGGTGGCTGGTGAAT-TC-A-T--GCTTTGCTTGAGATTCACCTGTA-GTCTGTAGTTA-ATTTTGTTTATATACACG-T-----ATGGTT----ACCAACATCTC-TGTCAGTAAGTAAAATACCACCA-T-GCGGAAA-CAATGTGACAAGAAGTGAAAACAATATTATACAATTGACCA----CGA----CA----GTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAGAA
gi|3 : TAACAAAATA-G--C-TTGTTT----ACGTGGACTGAATTCTTAC--ACTCAG---CTA-GTAGAAAGTATGTA----CATGTACATTGTATAGCCATG--TATAGCGTCA
gi|13 : TAACAAAATA-G--CTA-GATT----ATGTGACGTGAATTATC---------GTGTCGG-GCAGAT------CAAGGCTATGTACATTGTATAGGCACG--TATAGCGTCA-GTAGTTTCAATAGGAGTTTGGtaaagtacaggtttttaagctatctctaggctggatagacagggataataccttttaatggtattttacatattcatttttacgttaatttcataaaaatctgttgagtaatgagcagtttataaaaagtaaactggcttattattgttaaactaaccgtatttttgtacattttaaatcgcacgatgccgggttactggttaattcttgttttactcgagattcacctgtggtatgttgttatttttgt
gi|16 : gTAACAAAATA-AGTT-T-GTTT----AAGTGGCCTGAATTCTCGGTGAC--AG---CT---TATAA------CAACG-TATGTACATTGTATGG
gi|21 : gTAACAAAATA-G--C-T-GTTT----ATATGGCCTGAATTACCAaattatatcggt
gi|22 : aagacacatctgTAACAAAATAAG--CTA-GTTT----ATGTAACCTGAATTATC
gi|20 : gTAACAAAATA------A-GTTTGGTAATGTGGCCTGAATTATCAG--gtgtc
gi|2 : TAACAAAATA-AGTT-T-GTTT----ATGTGGCCTGAATTCTCAG--tgtctgcttata
gi|23 : TAACAAAATA-AGTT-T-GTTT----ACGTGGTCTGAATAATCAG--tgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|17 : gGGGTCAGTGCA-AA------TG----TATATACATTGTGTAGGCATG--TATAGTGTCAGGTA--GT-AAAGG--TTT---GTTAAAt
gi|18 : cgtgggtCTA-GTACAA------TG----TATGTACATTGTGTAGCCATGTATCTA--GTCAGCTAGTctta
gi|19 : atctagtcagCTA-GTACAA------TG----TATGTACACTGTGTAGCCATG--aca
gi|3 : atctagtcagATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAGTAAACTGGCTTATTATTGTTAAACTAACCGTAT---------------TTT-TGTACAT-TTTAAAT----CGCACGATG-CCGGGTTACTGGTTAAT-TC-T-T--GTTTTACTCGAGATTCACCTGTG-GTATGTTGTTA-TTTTTGTtatctagtca
gi|10 : taacaaaatagcttgtttacgtggactgaattcttacactcagctagtagaaagtatgtacatgtacattgtatagccatgtatagcgtcataaagtacaggtttttaagctatctctaggctggatagacagggataataccttttaatggtattttacatattcAAAACTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGTTTGTAT----CGTTCGTTAT-TGTATTACAAGTTAAT-TCCA-T--GAATTTCTTGAGATGCACCTGTA-GT
gi|15 : taaaaacccgttcagtattgagtagtttagaATATTTTACAAGTAGCC-GTTA-TATACAT-TTTGTAT----CATGCGATGTC-GGGTGACTGATAAgttgtt
gi|2 : ttcataaaaacgtcgagaaatgcgcattttagaaaaaaTGTTTTACTATTAGCCGTTTT-CGTACATGTTTGTAT----CGTTCGATATC-GGATTACCAGTTAATACC-A-T--TATTTTCTTGAGATAAACTTGGG-ATATGTGGTT--ATATTGTATAAATAAAC
gi|6 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT-TGTATAT-TTGGAAT----CGTATGATGTTTGGGTGACTTGTTAAA-TC-A-T--GGTTTGCTTGAGATCCACCAGCG-GTTTGTGCTTA-TGTTTGTATATATACACT-C-----ATAAAT----ATCATCGTCTC-TGTTAGTTAACACAATTCCATCA-T-GAGAGAA-AGTTGTGAC----AGTGTGAAGAACGTTATA-ACTTGACCAAAACCTA----CG----GTATCaggaagaaacctaagtctc
gi|7 : t-CGTAC----ATGTTTGTAACGTTCGATACC-GGATAACAAGTAAAT-TCCA-TTAGTTT--CTTGAGATACACCTGTG-GTATGTGGTGATGCTATATTTATAGACGGG-TGAAAAATG---------TAA-ATCTCATGTCAGTCAGC-AAATGCCAACA-T-GCAGAAAGC--TTTGACAA
gi|4 : T----CGTACAATATCCGG-TGACAAGTTAAC-TCCG-T--GAGTTTCTTGAAATACACCTGTG-GTGTGT-GTTT-TTTTCGTATATATACA----------TGGTTGAAAACAAAAATCTC-TGTCAGTTAGCAAATTA-TACTG-T-GCGGAAG-CGTTATGACAAAGAGTG--TGCAACATTATA-ACTTGACCA----CGA----CATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAGcataacttgcccactacatgcg
gi|5 : tgtacattttttaaT----CGTTAGATATC-GAGCGACACGTTAGT-TC-AAT--GAATTTCTTGAGATACACGTGTG-GTATGTGGTT--ATATTGTATAAATAGACG-G-----GTAGAA----ACCTAAGTCTCTTGTCAGTTTGC-AAATTCCAACATT-GC-GAAA-TATTATTACA--GAGT--ATACAACTTTAT--AATTGACCA----CTACCTGCG----GTATCTGAGTGAGTACTtaa
gi|8 : ttgttcatgtttgcaAAT-TCCA-T--GATTTTCTTGAGATAAATCT-TAGGTATGCGG-TA-ATTTTGTAGAAATAGACG-A-----GTAGAA----ACCTAAATCCCTTTTCACT--TTGCAATTCCAACA-TCGCGG-----AACGTTA-AGGCAGAGTATACAATATAAT----TTGGCCA----CAA----C
gi|11 : atttTGTATATATACACGGT-----ATGATT----ACCACCATCTC-TGTCAGTTAGC-AAATTCCACCA-T-GGGGAAA-CGTTGTGAC--GAA-TGAAAACATCATCATA-ACTTGACCA----CGA----CATACGGTATCCGACTGA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TAACAAAATATATTTGTTTATGTGGTCAGCTAGTACAACGTATGTATATTGTACAAACATATATCGGTCACGTAGCGCAGGTTTGTTAAATTTATCGTTAGATAGATTGGGAAAAACATTTCATTTTACATATTCATATATATTT
Unaligned ( gi|12 ): TATGTACATTGTAAAGCCATGTATGTGTATCTAGTCAGGTAGTACAGGTTTATTAAACTTATCGCTAGAAAGATAGGGATAAAACATTTTAAAGATTTTTTAACATATTCATGTCT
Unaligned ( gi|14 ): AGCTTTTTTTGTACATTGTTGTAATGGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAATATCCTGTATAAATTAACGAGTAGAAGC
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT
Alignments
lowQualScore : 111111 22222222222222222 111111 1111 111 33333333333 1111111111 1 111 1 1 3 333333333333 1 33333
lowQualScore : 444444 88888888888888888 0 0 2 5 222222 0 2 0000 000 2 77777777777 6 999999999 3 88 7 2 2 9 9999999999 5 0 0 99999 5 4 6 4 0 4 2 444 1 1 4 3 0 8 1 1 3 777 7 77 5 0 1 5 5 0 3 5 000000000000 66 5 3 1 0 2 2 0 55555 444
lowQualScore : ...... ................. . . . . ...... . . .... ... . ........... . ......... . .. . . . . .......... . . . ..... . . . . . . . ... . . . . . . . . . ... . .. . . . . . . . . ............ .. . . . . . . . ..... ...
lowQualScore : 111111 55555555555555555 4 4 8 0 888888 7 5 6666 999 5 77777777777 7 000000000 0 00 0 2 5 0 3333333333 7 7 8 22222 7 4 0 0 3 0 4 777 4 0 1 6 1 3 1 0 9 777 2 66 0 3 0 7 7 1 0 3 999999999999 77 7 0 7 5 0 5 2 00000 000
consensus : TAACAAAATAGGTTT-GTTTACGTGGCCTGAATTATC-A-----GNC--AG--TCTAGTACAA-CGTATGT------ACATTGTATAGNCATGTA----TAGC--GTCAGGTAGT-T-AATAG---TTTGGGTTAAATAATAAGTAATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAGT-AACCGGCTTATTATTGT-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGT-TTGTA-TCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTTA-TTTTGTATANATANACGG-GTGGAAACCN-AAATCTC-TGTCAGTTAGC-AAATTCCANCA-T-GCGGAAACGTTGTGACAA-G-AGTGTAAACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
Reference ( family-4342 ) : TAACAAAATAGGTCT-GTTTATGTGGCCTGAATTATC-A-----GAC--AGG-TCTAGTANAA-CGTATGT------ACATTGTGTAGCCATGTA----TAGC--GTCAGGTAGTNTCAANGGGANTTTGGGTTAAANNNNNNNNNATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAGTAAACTGGCTTATTATTGTNAAACTAACCGTATTTTACNATTAGCC-TTTT-CGTACAT-T-TTGTA-TCGTNCGATATCCGGGTGACNAGTTAATTCCATGATTTTCTTGAGATACACCTGTGGTATGTGGTTANTTTTGTATANATACACGN-ATGGATACCA-AAATCTC-TGTCAGTTAGCGAAATTCCANCA-T-GCGGAAACGTTGTGACAAGG-AGTGTATACAACATTATA-ACTTGACCACGACGTACGGTATCCGAGTGAGCAC----TGTATTATGTTGTATATAGTTTAG
gi|1 : TAACAAAATAG--CA-GTTTACGTGTCCTGAATTATC-A-----GAC--AGGGTCTGGTATAA-CATATGT------ACATTGTATAGGCATGGC----TAGC--GTCAGGTGGTGT-AATAG--TTTTGGGTTAAATAATAAGTAATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTTAATCGGTTTATTATTGTAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-T-ATGAT-TCGTGCGATGTCTGGGTGGCTGGTGAATTC-ATGCTTTGCTTGAGATTCACCTGTAGTCTGTAGTTAATTTTGTTTATATACACGT-ATGGTTACCA-ACATCTC-TGTCAGTAAGTAAAATACCACCA-T-GCGGAAACAATGTGACAAGA-AGTGAAAACAATATTATACAATTGACCACG----ACAGTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAG
gi|10 : TAAAAACCCGTTCAGTATTGAGTAGTTTAGAAAAA------------------------CTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGT-TTGTA-TCGTTCGTTATT-GTATTACAAGTTAATTCCATGAATTTCTTGAGATGCACCTGTAGTGTaa
gi|11 : TGTATATATACACGGTATGATTACCA-CCATCTC-TGTCAGTTAGC-AAATTCCACCA-T-GGGGAAACGTTGTGAC---G-AATGAAAACATCATCATA-ACTTGACCACGACATACGGTATCCGACTGAGtgtt
gi|12 : tacaTATGT------ACATTGTAAAGCCATGTATGTGTATCTAGTCAGGTAGTt
gi|13 : TAACAAAATAG--CTAGATTATGTGACGTGAATTATC-GTGTCGGGC--AGA-TCAAG----G-C-TATGT------ACATTGTATAGGCACGTA----TAGC--GTCA-GTAGTTTCAATAGGAGTTTGGacaggtttattaaacttatcgctagaaagatagggataaaacattttaaagattttttaacatattcatgtct
gi|14 : g-TTTT-TGTACAT-TGTTGTA----------AT--GGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAATA-TCCTGTATAAATTAACGA-GTAGA
gi|15 : agcttTTCATAAAAA--CGTCGAGAAATGCGCATTTTAGAAAAAagc
gi|15 : TATTTTACAAGTAGCC-GTTA-TATACAT-T-TTGTA-TCATGCGATGT-CGGGTGACaatattttacaagtagccgttatatacattttgtatcatgcgatgtcgggtgactgataa
gi|16 : ttcataaaaacgtcgagaaatgcgcattttagaaaaaaaTAACAAAATAAGTTT-GTTTAAGTGGCCTGAATTCTC-GGT---GAC--AGC-T-TATAACAA-CGTATGT------ACATTGTATGGtgataa
gi|17 : gGG-TC-AGTGCAAATGTATAT------ACATTGTGTAGGCATGTA----TAGT--GTCAGGTAGT---AAAGG---TTT--GTTAAAaattatatcggt
gi|18 : cgtgggtgATCTA-----GTC--AG---CTAGTACAA-TGTATGT------ACATTGTGTAGCCATGTA----TCTA--GTCAGCTAGTctta
gi|19 : ATCTA-----GTC--AG---CTAGTACAA-TGTATGT------ACACTGTGTAGCCATGTA----Taca
gi|2 : TAACAAAATAAGTTT-GTTTATGTGGCCTGAATTCTC-A-----Gctagtca
gi|2 : TGTTTTACTATTAGCCGTTTT-CGTACATGT-TTGTA-TCGTTCGATAT-CGGATTACCAGTTAATACCATTATTTTCTTGAGATAAACTTGGGATATGTGGTTA-TATTGTATAAATAAACAG-GAAGAAACCT-AAGTCTC-tgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|20 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAACAAAATAAGTTT-GGTAATGTGGCCTGAATTATC-A-----G
gi|21 : TAACAAAATAG--CT-GTTTATATGGCCTGAATTACC-A-----tgtctgcttata
gi|22 : aagacacatctgTAACAAAATAAGCTA-GTTTATGTAACCTGAATTATC-
gi|23 : gTAACAAAATAAGTTT-GTTTACGTGGTCTGAATAATC-A-----Ggtgtc
gi|3 : gTAACAAAATAGCT-T-GTTTACGTGGACTGAATTCTT-A-----CACTCAG---CTAGTAGAA-AGTATGTACATGTACATTGTATAGCCATGTA----TAGC--GTCAt
gi|3 : ATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAGTAAACTGGCTTATTATTGTTAAACTAACCGTA---------------TTTT-TGTACAT-T-TTAAA-TCGCACGATG-CCGGGTTACTGGTTAATTCT-TGTTTTACTCGAGATTCACCTGTGGTATGTTGTTATTTTTGTtaaagtacaggtttttaagctatctctaggctggatagacagggataataccttttaatggtattttacatattcatttttacgttaatttcataaaaatctgttgagtaatgagcagtttataaaaagtaaactggcttattattgttaaactaaccgtatttttgtacattttaaatcgcacgatgccgggttactggttaattcttgttttactcgagattcacctgtggtatgttgttatttttgt
gi|4 : taacaaaatagcttgtttacgtggactgaattcttacactcagctagtagaaagtatgtacatgtacattgtatagccatgtatagcgtcataaagtacaggtttttaagctatctctaggctggatagacagggataataccttttaatggtattttacatattcGTACAT-T-TTTTAATCGTACAATATCCGG-TGACAAGTTAACTCCGTGAGTTTCTTGAAATACACCTGTGGTGTGTGTTT-TTTTCGTATATATACATGG-TTGAAAACAA-AAATCTC-TGTCAGTTAGC-AAATTATACTG-T-GCGGAAGCGTTATGACAAAG-AGTGTG--CAACATTATA-ACTTGACCACGACATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAG
gi|5 : tT-TGTTCATGT-TTGCA-TCGTTAGATATC-GAGCGACACGTTAGTTCAATGAATTTCTTGAGATACACGTGTGGTATGTGGTTA-TATTGTATAAATAGACGG-GTAGAAACCT-AAGTCTCTTGTCAGTTTGC-AAATTCCAACATT-GC-GAAATATTATTACA--G-A--GTATACAACTTTATA-A-TTGACCACTACCTGCGGTATCTGAGTGAGTAC----Ttaa
gi|6 : -TTTT-TGTATAT-T-TGGAA-TCGTATGATGTTTGGGTGACTTGTTAAATC-ATGGTTTGCTTGAGATCCACCAGCGGTTTGTGCTTATGTTTGTATATATACACTC-ATAAATATCA-TCGTCTC-TGTTAGTTAACACAATTCCATCA-T-GAGAGAAAGTTGTGAC-----AGTGTGAAGAACGTTATA-ACTTGACCAAAACCTACGGTATC
gi|7 : -CGTACATGT-TTGTA-ACGTTCGATA-CCGGATAACAAGTAAATTCCATTAGTTTCTTGAGATACACCTGTGGTATGTGGTGA-TGCTATATTTATAGACGG-GTGAAAAATGTAAATCTCATGTCAGTCAGC-AAATGCCAACA-T-GCAGAAA-GCTTTGACAA-----------------CATA-ACTTGCCCACTACATGCG
gi|8 : TTAATTCCATGATTTTCTTGAGATAAATCTTAGGTATGCGG-TAATTTTGTAGAAATAGACGA-GTAGAAACCT-AAATCCCTTTTCACTTTGC--AATTCCAACA-TCGCGG-AACGTT-----AAGGCAGAGTATACAA---TATA-ATTTGGCCACAAC
gi|9 : atTAACAAAATATATTT-GTTTATGTGG---------TC-A-----G---------CTAGTACAA-CGTATGT------ATATTGTACAAACATATA----TCG---GTCACGTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT
Alignments
lowQualScore : 1111111111111111111111111 111111111111111111111111
lowQualScore : 111 111111111111 111111 1111111111 1111 555555555555555555555 222 22222 5555555555555555555555555 111111111111111111111111 1 111 1 333333333333 33333
lowQualScore : 222 2 44 999999999999 0 55 4 222222 9999999999 22 4 9999 2222 5 0 222222222222222222222 444 00000 3333333333333333333333333 2 22 7 1 555555555555555555555555 2 0 4 0 77777 5 4 5 2 2 444 1 1 1 0 4 55 1 1 4 4 1 5 999 1 5 5 0 3 0 666666666666 66 5 3 1 2 0 55555 1 1
lowQualScore : ... . .. ............ . .. . ...... .......... .. . .... .... . . ..................... ... ..... ......................... . .. . . ........................ . . . . ..... . . . . . ... . . . . . .. . . . . . . ... . . . . . . ............ .. . . . . . ..... . .
lowQualScore : 444 1 66 777777777777 8 33 4 888888 4444444444 11 4 4444 8888 7 7 777777777777777777777 222 00000 0000000000000000000000000 5 00 0 0 000000000000000000000000 5 2 2 8 66666 7 4 0 9 4 777 4 0 0 1 4 66 0 0 4 4 0 0 444 0 7 7 1 0 4 000000000000 77 7 0 7 5 2 00000 0 0
consensus : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GTCAG---CTAGTACAA-CG-TATG------TACAT----------TGTATAGNCATGT-A----TAGC--GT-CAGGTAGT-T--AA--------T---A-GTTT-GGGTTAA-----ATAATACCTTTTAATGGTATTTTACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTGT-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
Reference ( family-4342 ) : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GNCAG--TCTAGTACAA-CG-TATG------TACAT----------TGTATAGNCATGT-A----TAGC--GT-CAGGTAGT-T--AA--------T---A-GTTT-GGGTTAA-----ATAATA---------AGTA------------ATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGTATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTGTAAACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
gi|1 : TAACAAAATAG--CAGTTTACGTGTCCTGAATTAT--C-A--GACAGGGTCTGGTATAA-CA-TATG------TACAT----------TGTATAGGCATGG-C----TAGC--GT-CAGGTGGTGT--AA--------T---A-GTTTTGGGTTAA-----ATAATA---------AGTA------------ATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTT-AATCGGTTTATTATTG-TAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-TATGATTCGTGCGATGTCTGGGTGGCTGGTGAATT-CATGCTTTGCTTGAGATTCACCTGTAGTCTGTAGTTAAT-TTTGTTTATATACACGT-ATG-GTTACCAACATCTC-TGTCAGTAAGTAA-AATACCACCA-T-GCGGAAACAATGTGAC-AAGAAGTGAAAACAATATTATACAATTGACCACGACA----GTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAG
gi|10 : TAAAAACCCGTTCAGTATTGAGTAGTTTAGAAAAA--------------------------CTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGTTTGTATCGTTCGTTAT-TGTATTACAAGTTAATTCCATGAATTTCTTGAGATGCACCTGTAGTGTaa
gi|11 : TGTATATATACACGGTATG-ATTACCACCATCTC-TGTCAGTTAGC-A-AATTCCACCA-T-GGGGAAACGTTGTGAC---G-AATGAAAACATCATCATA-ACTTGACCACGACATACGGTATCCGACTGAGtgtt
gi|12 : taca-TATG------TACAT----------TGTAAAGCCATGT-ATGTGTATCTAGT-CAGGTAGT-----A--------C---AGGTTT---ATTAA-----At
gi|13 : TAACAAAATAG-CTAGATTATGTGACGTGAATTAT--C-GT-GTCGG--GC-AGATCAA-GGCTATG------TACAT----------TGTATAGGCACGT-A----TAGC--GT-CA-GTAGT-TTCAA--------TAGGA-GTTT-GGcttatcgctagaaagatagggataaaacattttaaagattttttaacatattcatgtct
gi|14 : g-TTTT-TGTACATTGTTGTA---------AT--GGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAAT-AT-CCTGTATAAATTAACGA-GTA-GAAGC
gi|15 : agcttTTCATAAAAA--CGTCGAGAAATGCGCATTTTAGAAAA------------------------AAA-------TATTTTACAAGTAGCC-GTTA-TATACAT-TTTGTATCATGCGATGT-CGGGTGAC
gi|16 : TAACAAAATAAGTTTGTTTAAGTGGCCTGAATTCT--C-GGTGACAG--CTTATAACAA-CG-TATG------TACAT----------TGTATGGA-AT-T-A----TATC--Gtgataa
gi|17 : gG--TC-AGTGCAAATG-TATA------TACAT----------TGTGTAGGCATGT-A----TAGT--GT-CAGGTAG--T--AA--------A---G-GTTT---GTTAA-----Agt
gi|18 : cgtgggtggAT--CTA--GTCAG---CTAGTACAA-TG-TATG------TACAT----------TGTGTAGCCATGT-A----TCTA--GT-CAGCTAGT-ctta
gi|19 : AT--CTA--GTCAG---CTAGTACAA-TG-TATG------TACAC----------TGTGTAGCCATGT-A----Taca
gi|2 : TAACAAAATAAGTTTGTTTATGTGGCCTGAATTCT--C-AGTGTCAG--CTTATAACAA-Cctagtca
gi|2 : TGTTTTACTATTAGCCGTTTT-CGTACATGTTTGTATCGTTCGATATC-GGATTACCAGTTAATACCATTATTTTCTTGAGATAAACTTGGGATATGTGGTT-AT-ATTGTATAAATAAACAG-GAA-GAAACCTAAGTCTC-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|20 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAACAAAATAAGTTTGGTAATGTGGCCTGAATTAT--C-A--GT--G--TCT
gi|21 : TAACAAAATAG--CTGTTTATATGGCCTGAATTAC--C-A--gcttata
gi|22 : aagacacatctgTAACAAAATAAGCTAGTTTATGTAACCTGAATTAT--C-
gi|23 : gTAACAAAATAAGTTTGTTTACGTGGTCTGAATAAT--C-A--Ggtgtc
gi|3 : gTAACAAAATAG-CTTGTTTACGTGGACTGAATTCTTAC-A--CTCAG---CTAGTAGAA-AG-TATGTACATGTACATTGTATAGCCATGTATAGC---GTCA----TAAA--GTACAGGTTTT-T--AAGCTATCTCT---A-GGCT-GGATAGACAGGGATAATACCTTTTAATGGTATTTTACATATTCATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAG-TAAACTGGCTTATTATTGTT-AAACTAACCGTA---------------TTTT-TGTACAT-TTTAAATCGCACGATG-CCGGGTTACTGGTTAATTCT-TGTTTTACTCGAGATTCACCTGTGGTATGTTGTT-AT-TTTt
gi|4 : GTACATTTTTTAATCGTACAATATCCGG-TGACAAGTTAACTCCGTGAGTTTCTTGAAATACACCTGTGGTGTGTGTTT-TT-TTCGTATATATACATGG-TTG-AAAACAAAAATCTC-TGTCAGTTAGC-A-AATTATACTG-T-GCGGAAGCGTTATGACAAAG-AGTGT--GCAACATTATA-ACTTGACCACGACATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAGtgt
gi|5 : tT-TGTTCATGTTTGCATCGTTAGATATC-GAGCGACACGTTAGTTCAATGAATTTCTTGAGATACACGTGTGGTATGTGGTT-AT-ATTGTATAAATAGACGG-GTA-GAAACCTAAGTCTCTTGTCAGTTTGC-A-AATTCCAACATT-GC-GAAATATTATTAC--AG-AGTAT--ACAACTTTATA-A-TTGACCACTACCTGCGGTATCTGAGTGAGTAC----Ttaa
gi|6 : -TTTT-TGTATAT-TTGGAATCGTATGATGTTTGGGTGACTTGTTAAATC-ATGGTTTGCTTGAGATCCACCAGCGGTTTGTGCTT-ATGTTTGTATATATACACTC-ATA-AATATCATCGTCTC-TGTTAGTTAAC-ACAATTCCATCA-T-GAGAGAAAGTTGTGAC-----AGTGTGAAGAACGTTATA-ACTTGACCAAAACCTACGGTATC
gi|7 : -CGTACATGTTTGTAACGTTCGATA-CCGGATAACAAGTAAATTCCATTAGTTTCTTGAGATACACCTGTGGTATGTGGTG-AT-GCTATATTTATAGACGG-GTGAAAAATGTAAATCTCATGTCAGTCAGC-A-AATGCCAACA-T-GCAGAAA-GCTTTGAC-AA----------------CATA-ACTTGCCCACTACATGCG
gi|8 : TTAATTCCATGATTTTCTTGAGATAAATCTTAGGTATGCGGTA-AT-TTTGTAGAAATAGACGA-GTA-GAAACCTAAATCCCTTTTCACTTTGC---AATTCCAACA-TCGCGG-AACGTTAAGGC--AG-AGTAT--ACAA---TATA-ATTTGGCCACAAC
gi|9 : atTAACAAAATATATTTGTTTATGTGG---------T--C-A--G-------CTAGTACAA-CG-TATG------TATAT----------TGTACAAACATAT-A----TCG---GT-CACGTAGC-G--CA------------G-GTTT---GTTAA-----AT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 111 1111 111111 2222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111111111111111111111111 1 111 1 4444444444444 33333
lowQualScore : 222 2 0 44 1111 55 888 1 4 55 4 222222 1 9999 888 3333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 0 2 22 7 1 555555555555555555555555 2 0 4 0 77777 5 4 5 1 2 444 1 1 1 0 4 55 1 1 4 4 1 5 999 1 5 5 0 3 0 6666666666666 66 5 3 1 2 0 55555 1 1
lowQualScore : ... . . .. .... .. ... . . .. . ...... . .... ... .......... ........................................................................................ . . . .. . . ........................ . . . . ..... . . . . . ... . . . . . .. . . . . . . ... . . . . . . ............. .. . . . . . ..... . .
lowQualScore : 444 1 7 66 2222 55 888 0 4 33 4 888888 0 4444 222 6666666666 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 0 5 00 0 0 000000000000000000000000 5 2 2 8 66666 7 4 0 0 4 777 4 0 0 1 4 66 0 0 4 4 0 0 444 0 7 7 1 0 4 3333333333333 77 7 0 7 5 2 00000 0 0
consensus : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTG-T-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
Reference ( family-4342 ) : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTG-T-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
gi|1 : TAACAAAATAG--CAGTTTACGTGTCCTGAATTAT--C-A--GA--CAGGGTCTGGT-ATAA-CA-TATGTACAT------TGTATAGGCATGGC----TAGC--GTCA---------GGTGGTGT--AA--------T---A-GTTTTGGGTTAA----------------------ATAATA--------------AG-----------TA-------------ATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTT-AATCGGTTTATTATTG-TAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-TATGATTCGTGCGATGTCTGGGTGGCTGGTGAATT-CATGCTTTGCTTGAGATTCACCTGTAGTCTGTAGTTAAT-TTTGTTTATATACACGT-ATG-GTTACCAACATCTC-TGTCAGTAAGTAA-AATACCACCA-T-GCGGAAACAATGTGAC-AAGAAGTGAA-AACAATATTATACAATTGACCACGACA----GTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAG
gi|10 : TAAAAACCCGTTCAGTATTGAGTAGTTTAGAAAAA--------------------------CTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGTTTGTATCGTTCGTTATT-GTATTACAAGTTAATTCCATGAATTTCTTGAGATGCACCTGTAGTGTaa
gi|11 : TGTATATATACACGGTATG-ATTACCACCATCTC-TGTCAGTTAGC-A-AATTCCACCA-T-GGGGAAACGTTGTGAC---G-AATGAA-AACATCATCATA-ACTTGACCACGACATACGGTATCCGACTGAGtgtt
gi|12 : taca-TATGTACAT------TGTAAAGCCATGTATGTGTATCTAGTCA---------GGTAGT-----A--------C---AGGTTT---ATTAAACTTATCGCTAGAAAGATAGGGATAAAACATTT---TAA--AGA-----------TTTTTTAACATATTCATGTCt
gi|13 : TAACAAAATAG-CTAGATTATGTGACGTGAATTAT--C-GT-GT--CGG---GCAGA-TCAA-GGCTATGTACAT------TGTATAGGCACGTA----TAGC--GTCA----------GTAGT-TTCAA--------TAGGA-GTTT-GGt
gi|14 : g-TTTT-TGTACATTGTTGTA---------AT--GGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAAT-AT-CCTGTATAAATTAACGA-GTA-GAAGC
gi|15 : agcttTTCATAAAAA--CGTCGAGAAATGCGCATTTTAGAAAA------------------------AAA-------TATTTTACAAGTAGCC-GTTA-TATACAT-TTTGTATCATGCGATGT-CGGGTGAC
gi|16 : TAACAAAATAAGTTTGTTTAAGTGGCCTGAATTCT--C-G--GTGACAG---CTTATAACAA-CG-TATGTACAT------TGTATGGA-AT-TA----TATC--Gtgataa
gi|17 : gAGT-GCAAATG-TATATACAT------TGTGTAGGCATGTA----TAGT--GTCA---------GGTAG--T--AA--------A---G-GTTT---GTTAA----------------------Agt
gi|18 : cgtgggtgggtcAT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAT------TGTGTAGCCATGTA----TCTA--GTCA---------GCTAGT-ctta
gi|19 : AT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAC------TGTGTAGCCATGTA----Taca
gi|2 : TAACAAAATAAGTTTGTTTATGTGGCCTGAATTCT--C-AGTGT--CAG---CT--T-ATAA-Cctagtca
gi|2 : TGTTTTACTATTAGCCGTTTT-CGTACATGTTTGTATCGTTCGATATC-GGATTACCAGTTAATACCATTATTTTCTTGAGATAAACTTGGGATATGTGGTT-AT-ATTGTATAAATAAACAG-GAA-GAAACCTAAGTCTC-aacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|20 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAACAAAATAAGTTTGGTAATGTGGCCTGAATTAT--C-A--GT--
gi|21 : TAACAAAATAG--CTGTTTATATGGCCTGAATTAC--C-A--gtctgcttata
gi|22 : aagacacatctgTAACAAAATAAGCTAGTTTATGTAACCTGAATTAT--C-
gi|23 : gTAACAAAATAAGTTTGTTTACGTGGTCTGAATAAT--C-A--GT--gtgtc
gi|3 : gTAACAAAATAG-CTTGTTTACGTGGACTGAATTCTTAC-A--CT--CAG---CTAGT-AGAA-AG-TATGTACATGTACATTGTATAGCCATGTA----TAGC--GTCATAAAGTACAGGTTTT-T--AAGCTATCTCT---A-GGCT-GGATAGACAGGG-----------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAG-TAAACTGGCTTATTATTGTT-AAACTAACCGTA---------------TTTT-TGTACAT-TTTAAATCGCACGATG-CCGGGTTACTGGTTAATTCT-TGTTTTACTCGAGATTCACCTGTGGTATGTTGTT-AT-TTT
gi|4 : GTACATTTTTTAATCGTACAATATCCGG-TGACAAGTTAACTCCGTGAGTTTCTTGAAATACACCTGTGGTGTGTGTTT-TT-TTCGTATATATACATGG-TTG-AAAACAAAAATCTC-TGTCAGTTAGC-A-AATTATACTG-T-GCGGAAGCGTTATGACAAAG-AGTG-T--GCAACATTATA-ACTTGACCACGACATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAGtgt
gi|5 : tT-TGTTCATGTTTGCATCGTTAGATATC-GAGCGACACGTTAGTTCAATGAATTTCTTGAGATACACGTGTGGTATGTGGTT-AT-ATTGTATAAATAGACGG-GTA-GAAACCTAAGTCTCTTGTCAGTTTGC-A-AATTCCAACATT-GC-GAAATATTATTAC--AG-AGTA-T--ACAACTTTATA-A-TTGACCACTACCTGCGGTATCTGAGTGAGTAC----Ttaa
gi|6 : -TTTT-TGTATAT-TTGGAATCGTATGATGTTTGGGTGACTTGTTAAATC-ATGGTTTGCTTGAGATCCACCAGCGGTTTGTGCTT-ATGTTTGTATATATACACTC-ATA-AATATCATCGTCTC-TGTTAGTTAAC-ACAATTCCATCA-T-GAGAGAAAGTTGTGAC-A----GTG-TGAAGAACGTTATA-ACTTGACCAAAACCTACGGTATC
gi|7 : -CGTACATGTTTGTAACGTTCGATA-CCGGATAACAAGTAAATTCCATTAGTTTCTTGAGATACACCTGTGGTATGTGGTG-AT-GCTATATTTATAGACGG-GTGAAAAATGTAAATCTCATGTCAGTCAGC-A-AATGCCAACA-T-GCAGAAA-GCTTTGAC-AA-----------------CATA-ACTTGCCCACTACATGCG
gi|8 : TTAATTCCATGATTTTCTTGAGATAAATCTTAGGTATGCGGTA-AT-TTTGTAGAAATAGACGA-GTA-GAAACCTAAATCCCTTTTCACTTTGC---AATTCCAACA-TCGCGG-AACGTTAAGGC--AG-AGTA-T--ACAA---TATA-ATTTGGCCACAAC
gi|9 : atTAACAAAATATATTTGTTTATGTG------------------GT--CAG---CTAGT-ACAA-CG-TATGTATAT------TGTACAAACATATA----TCG---GTCA---------CGTAGC-G--CA------------G-GTTT---GTTAA----------------------AT-TTATCGTTAGATAGATTGGGAAAAACATTTCATTTT-ACATATTCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 111 1111 111111 2222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111111111111111111111111 1 111 1 4444444444444 33333
lowQualScore : 222 2 0 44 1111 55 888 1 4 55 4 222222 1 9999 888 3333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 0 2 22 7 1 555555555555555555555555 2 0 4 0 77777 5 4 5 1 2 444 1 1 1 0 4 55 1 1 4 4 1 5 999 1 5 5 0 3 0 6666666666666 66 5 3 1 2 0 55555 1 1
lowQualScore : ... . . .. .... .. ... . . .. . ...... . .... ... .......... ........................................................................................ . . . .. . . ........................ . . . . ..... . . . . . ... . . . . . .. . . . . . . ... . . . . . . ............. .. . . . . . ..... . .
lowQualScore : 444 1 7 66 2222 55 888 0 4 33 4 888888 0 4444 222 6666666666 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 0 5 00 0 0 000000000000000000000000 5 2 2 8 66666 7 4 0 0 4 777 4 0 0 1 4 66 0 0 4 4 0 0 444 0 7 7 1 0 4 3333333333333 77 7 0 7 5 2 00000 0 0
consensus : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTG-T-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
Reference ( family-4342 ) : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTG-T-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
gi|1 : TAACAAAATAG--CAGTTTACGTGTCCTGAATTAT--C-A--GA--CAGGGTCTGGT-ATAA-CA-TATGTACAT------TGTATAGGCATGGC----TAGC--GTCA---------GGTGGTGT--AA--------T---A-GTTTTGGGTTAA----------------------ATAATA--------------AG-----------TA-------------ATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTT-AATCGGTTTATTATTG-TAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-TATGATTCGTGCGATGTCTGGGTGGCTGGTGAATT-CATGCTTTGCTTGAGATTCACCTGTAGTCTGTAGTTAAT-TTTGTTTATATACACGT-ATG-GTTACCAACATCTC-TGTCAGTAAGTAA-AATACCACCA-T-GCGGAAACAATGTGAC-AAGAAGTGAA-AACAATATTATACAATTGACCACGACA----GTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAG
gi|10 : TAAAAACCCGTTCAGTATTGAGTAGTTTAGAAAAA--------------------------CTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGTTTGTATCGTTCGTTATT-GTATTACAAGTTAATTCCATGAATTTCTTGAGATGCACCTGTAGTGTaa
gi|11 : TGTATATATACACGGTATG-ATTACCACCATCTC-TGTCAGTTAGC-A-AATTCCACCA-T-GGGGAAACGTTGTGAC---G-AATGAA-AACATCATCATA-ACTTGACCACGACATACGGTATCCGACTGAGtgtt
gi|12 : taca-TATGTACAT------TGTAAAGCCATGTATGTGTATCTAGTCA---------GGTAGT-----A--------C---AGGTTT---ATTAAACTTATCGCTAGAAAGATAGGGATAAAACATTT---TAA--AGA-----------TTTTTTAACATATTCATGTCt
gi|13 : TAACAAAATAG-CTAGATTATGTGACGTGAATTAT--C-GT-GT--CGG---GCAGA-TCAA-GGCTATGTACAT------TGTATAGGCACGTA----TAGC--GTCA----------GTAGT-TTCAA--------TAGGA-GTTT-GGt
gi|14 : g-TTTT-TGTACATTGTTGTA---------AT--GGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAAT-AT-CCTGTATAAATTAACGA-GTA-GAAGC
gi|15 : agcttTTCATAAAAA--CGTCGAGAAATGCGCATTTTAGAAAA------------------------AAA-------TATTTTACAAGTAGCC-GTTA-TATACAT-TTTGTATCATGCGATGT-CGGGTGAC
gi|16 : TAACAAAATAAGTTTGTTTAAGTGGCCTGAATTCT--C-G--GTGACAG---CTTATAACAA-CG-TATGTACAT------TGTATGGA-AT-TA----TATC--Gtgataa
gi|17 : gAGT-GCAAATG-TATATACAT------TGTGTAGGCATGTA----TAGT--GTCA---------GGTAG--T--AA--------A---G-GTTT---GTTAA----------------------Agt
gi|18 : cgtgggtgggtcAT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAT------TGTGTAGCCATGTA----TCTA--GTCA---------GCTAGT-ctta
gi|19 : AT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAC------TGTGTAGCCATGTA----Taca
gi|2 : TAACAAAATAAGTTTGTTTATGTGGCCTGAATTCT--C-AGTGT--CAG---CT--T-ATAA-Cctagtca
gi|2 : TGTTTTACTATTAGCCGTTTT-CGTACATGTTTGTATCGTTCGATATC-GGATTACCAGTTAATACCATTATTTTCTTGAGATAAACTTGGGATATGTGGTT-AT-ATTGTATAAATAAACAG-GAA-GAAACCTAAGTCTC-aacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|20 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAACAAAATAAGTTTGGTAATGTGGCCTGAATTAT--C-A--GT--
gi|21 : TAACAAAATAG--CTGTTTATATGGCCTGAATTAC--C-A--gtctgcttata
gi|22 : aagacacatctgTAACAAAATAAGCTAGTTTATGTAACCTGAATTAT--C-
gi|23 : gTAACAAAATAAGTTTGTTTACGTGGTCTGAATAAT--C-A--GT--gtgtc
gi|3 : gTAACAAAATAG-CTTGTTTACGTGGACTGAATTCTTAC-A--CT--CAG---CTAGT-AGAA-AG-TATGTACATGTACATTGTATAGCCATGTA----TAGC--GTCATAAAGTACAGGTTTT-T--AAGCTATCTCT---A-GGCT-GGATAGACAGGG-----------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAG-TAAACTGGCTTATTATTGTT-AAACTAACCGTA---------------TTTT-TGTACAT-TTTAAATCGCACGATG-CCGGGTTACTGGTTAATTCT-TGTTTTACTCGAGATTCACCTGTGGTATGTTGTT-AT-TTT
gi|4 : GTACATTTTTTAATCGTACAATATCCGG-TGACAAGTTAACTCCGTGAGTTTCTTGAAATACACCTGTGGTGTGTGTTT-TT-TTCGTATATATACATGG-TTG-AAAACAAAAATCTC-TGTCAGTTAGC-A-AATTATACTG-T-GCGGAAGCGTTATGACAAAG-AGTG-T--GCAACATTATA-ACTTGACCACGACATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAGtgt
gi|5 : tT-TGTTCATGTTTGCATCGTTAGATATC-GAGCGACACGTTAGTTCAATGAATTTCTTGAGATACACGTGTGGTATGTGGTT-AT-ATTGTATAAATAGACGG-GTA-GAAACCTAAGTCTCTTGTCAGTTTGC-A-AATTCCAACATT-GC-GAAATATTATTAC--AG-AGTA-T--ACAACTTTATA-A-TTGACCACTACCTGCGGTATCTGAGTGAGTAC----Ttaa
gi|6 : -TTTT-TGTATAT-TTGGAATCGTATGATGTTTGGGTGACTTGTTAAATC-ATGGTTTGCTTGAGATCCACCAGCGGTTTGTGCTT-ATGTTTGTATATATACACTC-ATA-AATATCATCGTCTC-TGTTAGTTAAC-ACAATTCCATCA-T-GAGAGAAAGTTGTGAC-A----GTG-TGAAGAACGTTATA-ACTTGACCAAAACCTACGGTATC
gi|7 : -CGTACATGTTTGTAACGTTCGATA-CCGGATAACAAGTAAATTCCATTAGTTTCTTGAGATACACCTGTGGTATGTGGTG-AT-GCTATATTTATAGACGG-GTGAAAAATGTAAATCTCATGTCAGTCAGC-A-AATGCCAACA-T-GCAGAAA-GCTTTGAC-AA-----------------CATA-ACTTGCCCACTACATGCG
gi|8 : TTAATTCCATGATTTTCTTGAGATAAATCTTAGGTATGCGGTA-AT-TTTGTAGAAATAGACGA-GTA-GAAACCTAAATCCCTTTTCACTTTGC---AATTCCAACA-TCGCGG-AACGTTAAGGC--AG-AGTA-T--ACAA---TATA-ATTTGGCCACAAC
gi|9 : atTAACAAAATATATTTGTTTATGTG------------------GT--CAG---CTAGT-ACAA-CG-TATGTATAT------TGTACAAACATATA----TCG---GTCA---------CGTAGC-G--CA------------G-GTTT---GTTAA----------------------AT-TTATCGTTAGATAGATTGGGAAAAACATTTCATTTT-ACATATTCAT
blockSeqs : AGT T TA AGT GA . A A AT C GTACAT C TGTG CTA TAAAGTACAG TACAGGTTTATTAAACTTATCGCTAGAAAGATAGGGATAAAACATTTTAAAGA T A T TA C G AGTAAACTGGCTTATTATTGTT C A GCATT G T G T T TCC A A A . GT T C T A A T AC C T C C AAAGAGTGT CA . C G G C G A
blockSeqs : AGT A . GT . . T . G . . G . C G TTAAGCTATCTCTAGGCTGGATAGACAGGGATAATACCTTTTAATGG T . T T A C G CAAGT . . T T G TTT A A A . C A A . . T A A C . . C GAATGAAA CA . C G G .
blockSeqs : AGT T . TA . . A . C . . A . C G CGCAGGTTTGTTAAATTTATCGTTAGATAGATTGGGAAAAACATTT T . . G . . . CTATT . . G T T TT G C T . A A A . . A T A A . . T AGAGTAT CT . C T .
blockSeqs : AGC T . TA . . A . T . . G . T G . . . T T A TC A T T . T T C . . T . A T . . A AGTGTGA CG . C A
blockSeqs : AGT T . G . . A . T . . C . A C . . G A A TC G A G . T A G . . A . A A . . C AGAGTAT . . T T
blockSeqs : TAT T . A . . A . C . . C . C . . . G A T CC G A A . A T C . . T . . A . . . AA . . . A
blockSeqs : GC C . A . . A . A . . C . . . . C A TC G T T . G T G . . T .
blockSeqs : GC C . A . . . C . . A . . . A T CC A A G . T A G . .
blockSeqs : G T . A . . T . T . T
blockSeqs : . .
blockSeqs : .
blockSeqCons : AGT *** TC* A** AGAGTGN******
originalCons : TAACAAAATAGGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATCCGGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC-AAG-AGTG-T-AACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
finalCons : TAACAAAATAAGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATC-GGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGCA--AATTCCANCA-T-GCGGAAACGTTGTGACAGAGTGN------ACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1111 111111 2222222222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111111111111111111111111 1 1 11111 111 33333
lowQualScore : 888 2 0 44 1111 55 888 1 4 55 4 222222 1 9999 888 3333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 0 2 22 7 1 555555555555555555555555 2 0 4 0 77777 5 4 5 1 2 8 1 1 0 4 55 1 1 4 4 1 5 999 1 5 5 0 3 0 33333 888 66 5 3 1 2 0 55555 1 1
lowQualScore : ... . . .. .... .. ... . . .. . ...... . .... ... .......... ........................................................................................ . . . .. . . ........................ . . . . ..... . . . . . . . . . . .. . . . . . . ... . . . . . . ..... ... .. . . . . . ..... . .
lowQualScore : 333 1 7 66 2222 55 888 0 4 33 4 888888 0 4444 222 6666666666 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 0 5 00 0 0 000000000000000000000000 5 2 2 8 66666 7 4 0 0 4 0 0 0 1 4 66 0 0 4 4 0 0 444 0 7 7 1 0 4 77777 777 77 7 0 7 5 2 00000 0 0
consensus : TAACAAAATAAGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATC-GGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC--A--GAGTG--NACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
Reference ( family-4342 ) : TAACAAAATAAGTTTGTTTACGTGGCCTGAATTAT--C-A--GT--CAG---CTAGT-ACAA-CG-TATGTACAT------TGTATAGNCATGTA----TAGC--GTCA---------GGTAGT-T--AA--------T---A-GTTT-GGGTTAA----------------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTCGACGTNNATTTCATAAAAATCCGTTGAGTAATGAGCANTTTAGAAAAAG-T-AACCGGCTTATTATTG-T-AAACTAACCGTATTTTACNANTAGCC-TTTT-CGTACATGTTTGNATCGTNCGATATC-GGGTGACNAGTTAATTCCATGANTTTCTTGAGATACACCTGTGGTATGTGGTT-AT-TTTGTATANATANACGG-GTG-GAAACCNAAATCTC-TGTCAGTTAGC-A-AATTCCANCA-T-GCGGAAACGTTGTGAC--A--GAGTG--NACAACATTATA-ACTTGACCACGACATACGGTATCTGAGTGAGCAC----TGTATTATGTTNCNTATAGTTTAG
gi|1 : TAACAAAATAG--CAGTTTACGTGTCCTGAATTAT--C-A--GA--CAGGGTCTGGT-ATAA-CA-TATGTACAT------TGTATAGGCATGGC----TAGC--GTCA---------GGTGGTGT--AA--------T---A-GTTTTGGGTTAA----------------------ATAATA--------------AG-----------TA-------------ATTTCGACGTATATTTCATAATTGTCCGTTGAGTAATTAGCATTTTAGCAAAAGTT-AATCGGTTTATTATTG-TAAAACTAACCATATTTTATAAGAAGCC-CTTT-CGTACCT-TATGATTCGTGCGATGTCTGGGTGGCTGGTGAATT-CATGCTTTGCTTGAGATTCACCTGTAGTCTGTAGTTAAT-TTTGTTTATATACACGT-ATG-GTTACCAACATCTC-TGTCAGTAAGTAA-AATACCACCA-T-GCGGAAACAATGTGAC--AAGAAGTGAAAACAATATTATACAATTGACCACGACA----GTATCTGAGTGAACACTTTTTATATTATGTTTCCTATAGTTTAG
gi|10 : TAAAAACCCGTTCAGTATTGAGTAGTTTAGAAAAA--------------------------CTAATCATATTCTAGCATTAGCC-TTTTTCTTACATGTTTGTATCGTTCGTTATT-GTATTACAAGTTAATTCCATGAATTTCTTGAGATGCACCTGTAGTGTaa
gi|11 : TGTATATATACACGGTATG-ATTACCACCATCTC-TGTCAGTTAGC-A-AATTCCACCA-T-GGGGAAACGTTGTGAC-----GAATGAAAACATCATCATA-ACTTGACCACGACATACGGTATCCGACTGAGtgtt
gi|12 : taca-TATGTACAT------TGTAAAGCCATGTATGTGTATCTAGTCA---------GGTAGT-----A--------C---AGGTTT---ATTAAACTTATCGCTAGAAAGATAGGGATAAAACATTT---TAA--AGA-----------TTTTTTAACATATTCATGTCt
gi|13 : TAACAAAATA-GCTAGATTATGTGACGTGAATTAT--C-GT-GT--CGG---GCAGA-TCAA-GGCTATGTACAT------TGTATAGGCACGTA----TAGC--GTCA----------GTAGT-TTCAA--------TAGGA-GTTT-GGt
gi|14 : g-TTTT-TGTACATTGTTGTA---------AT--GGATGATAATTTAATTCCATGAATATCTTAAGATAAACCTGTGATATGCGAAT-AT-CCTGTATAAATTAACGA-GTA-GAAGC
gi|15 : agcttTTCATAAAAA--CGTCGAGAAATGCGCATTTTAGAAAA------------------------AAA-------TATTTTACAAGTAGCC-GTTA-TATACAT-TTTGTATCATGCGATGTC-GGGTGAC
gi|16 : TAACAAAATAAGTTTGTTTAAGTGGCCTGAATTCT--C-G--GTGACAG---CTTATAACAA-CG-TATGTACAT------TGTATGGA-AT-TA----TATC--Gtgataa
gi|17 : gAGT-GCAAATG-TATATACAT------TGTGTAGGCATGTA----TAGT--GTCA---------GGTAG--T--AA--------A---G-GTTT---GTTAA----------------------Agt
gi|18 : cgtgggtgggtcAT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAT------TGTGTAGCCATGTA----TCTA--GTCA---------GCTAGT-ctta
gi|19 : AT--CTA--GT--CAG---CTAGT-ACAA-TG-TATGTACAC------TGTGTAGCCATGTA----Taca
gi|2 : TAACAAAATAAGTTTGTTTATGTGGCCTGAATTCT--C-AGTGT--CAG---CT--T-ATAA-Cctagtca
gi|2 : TGTTTTACTATTAGCCGTTTT-CGTACATGTTTGTATCGTTCGATATC-GGATTACCAGTTAATACCATTATTTTCTTGAGATAAACTTGGGATATGTGGTT-AT-ATTGTATAAATAAACAG-GAA-GAAACCTAAGTCTC-aacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttactattagccgttttcgtacatgtttgtatcgttcgatatcggattaccagttaataccattattttcttgagataaacttgggatatgtggttatattgtataaataaacaggaagaaacctaagtctc
gi|20 : taacaaaataagtttgtttatgtggcctgaattctcagtgtcagcttataacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAACAAAATAAGTTTGGTAATGTGGCCTGAATTAT--C-A--GT--
gi|21 : TAACAAAATAG--CTGTTTATATGGCCTGAATTAC--C-A--gtctgcttata
gi|22 : aagacacatctgTAACAAAATAAGCTAGTTTATGTAACCTGAATTAT--C-
gi|23 : gTAACAAAATAAGTTTGTTTACGTGGTCTGAATAAT--C-A--GT--gtgtc
gi|3 : gTAACAAAATA-GCTTGTTTACGTGGACTGAATTCTTAC-A--CT--CAG---CTAGT-AGAA-AG-TATGTACATGTACATTGTATAGCCATGTA----TAGC--GTCATAAAGTACAGGTTTT-T--AAGCTATCTCT---A-GGCT-GGATAGACAGGG-----------------ATAATACCTTT---TAA--TGG-----------TATTTT-ACATATTCATTTTTACGTTAATTTCATAAAAATCTGTTGAGTAATGAGCAGTTTATAAAAAG-TAAACTGGCTTATTATTGTT-AAACTAACCGTA---------------TTTT-TGTACAT-TTTAAATCGCACGATGCC-GGGTTACTGGTTAATTCT-TGTTTTACTCGAGATTCACCTGTGGTATGTTGTT-AT-TTT
gi|4 : GTACATTTTTTAATCGTACAATATC-CGGTGACAAGTTAACTCCGTGAGTTTCTTGAAATACACCTGTGGTGTGTGTTT-TT-TTCGTATATATACATGG-TTG-AAAACAAAAATCTC-TGTCAGTTAGC-A-AATTATACTG-T-GCGGAAGCGTTATGACAAA--GAGTG--TGCAACATTATA-ACTTGACCACGACATACGGTATCTCAGT---CA------GTATTATGTTGTATATAGTTTAGtgt
gi|5 : tT-TGTTCATGTTTGCATCGTTAGATATC-GAGCGACACGTTAGTTCAATGAATTTCTTGAGATACACGTGTGGTATGTGGTT-AT-ATTGTATAAATAGACGG-GTA-GAAACCTAAGTCTCTTGTCAGTTTGC-A-AATTCCAACATT-GC-GAAATATTATTAC--A--GAGTA--TACAACTTTATA-A-TTGACCACTACCTGCGGTATCTGAGTGAGTAC----Ttaa
gi|6 : -TTTT-TGTATAT-TTGGAATCGTATGATGTTTGGGTGACTTGTTAAATC-ATGGTTTGCTTGAGATCCACCAGCGGTTTGTGCTT-ATGTTTGTATATATACACTC-ATA-AATATCATCGTCTC-TGTTAGTTAAC-ACAATTCCATCA-T-GAGAGAAAGTTGTGAC--A--GTGTG--AAGAACGTTATA-ACTTGACCAAAACCTACGGTATC
gi|7 : -CGTACATGTTTGTAACGTTCGATACC-GGATAACAAGTAAATTCCATTAGTTTCTTGAGATACACCTGTGGTATGTGGTG-AT-GCTATATTTATAGACGG-GTGAAAAATGTAAATCTCATGTCAGTCAGC-A-AATGCCAACA-T-GCAGAAA-GCTTTGAC--A----------AC------ATA-ACTTGCCCACTACATGCG
gi|8 : TTAATTCCATGATTTTCTTGAGATAAATCTTAGGTATGCGGTA-AT-TTTGTAGAAATAGACGA-GTA-GAAACCTAAATCCCTTTTCACTTTGC---AATTCCAACA-TCGCGG-AACGTTAAGGC--A--GAGTA--TACAA---TATA-ATTTGGCCACAAC
gi|9 : atTAACAAAATATATTTGTTTATGTG------------------GT--CAG---CTAGT-ACAA-CG-TATGTATAT------TGTACAAACATATA----TCG---GTCA---------CGTAGC-G--CA------------G-GTTT---GTTAA----------------------AT-TTATCGTTAGATAGATTGGGAAAAACATTTCATTTT-ACATATTCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AAAAACATTTCATTTTACATATTCATATATATTTT