lowQualScore : 2222222222222222222222222222222222222222
lowQualScore : 2222222222222222222222222222222222222222 5555555555555555555555555555555555555 11 1 1 22222 11111 1 33333 111 1111111 1 111 11 111 1 1111 22222 3333333 1 1 1111111 11 1 8888888888888888888888888888888888 1111 1111 22222222 11 2 111 1 1 1 3333333 44444444444444444 1 3333333333333333333333 555555555 111111111 11 2222 222 222222222222 2222222 2 11111 2 222222222 2222222222 22222222 1111111 11111 11 1 11 22222222 111
lowQualScore : 9999999999999999999999999999999999999999 6 7777777777777777777777777777777777777 8 3 8 33 1 6 3 6 1 5 6 1 0 44444 1 55555 5 5 7 2 1 7 4 11111 555 0 5 1111111 6 2 6 3 3 4 888 11 1 1 1 0 444 0 0 7777 22222 5555555 6 2 6 5 9 4 6 4444444 4 1 9 0 0 00 66 9 2 0 5 6 999 5 55 4444444444444444444444444444444444 5 8888 0000 5 1111 8 7 88888888 22 55 5 11 8 000 5 0 6 4 1 99 6 6 5 0 7777777 22222222222222222 1 66 9999999999999999999999 3 1 555555555 333333333 3 33 88 6666 333 0 888 5 5 1 222222222222 5 4444444 6 5 0 44444 1 2 4 77 0 999 99 2 555555555 9999999999 33 1 00000000 6666666 5 44444 66 5 66 0 2 3 33 0 22 33333333 777
lowQualScore : ........................................ . ..................................... . . . .. . . . . . . . . . ..... . ..... . . . . . . . ..... ... . . ....... . . . . . . ... .. . . . . ... . . .... ..... ....... . . . . . . . ....... . . . . . .. .. . . . . . ... . .. .................................. . .... .... . .... . . ........ .. .. . .. . ... . . . . . .. . . . . ....... ................. . .. ...................... . . ......... ......... . .. .. .... ... . ... . . . ............ . ....... . . . ..... . . . .. . ... .. . ......... .......... .. . ........ ....... . ..... .. . .. . . . .. . .. ........ ...
lowQualScore : 0000000000000000000000000000000000000000 0 0000000000000000000000000000000000000 0 8 0 44 8 0 3 7 7 2 7 0 8 33333 0 44444 7 7 8 7 7 8 2 55555 000 1 0 8888888 7 7 0 7 2 8 444 22 0 4 4 8 000 2 0 8888 88888 0000000 0 8 7 6 6 4 3 4444444 4 9 8 1 2 55 99 5 5 1 0 5 111 0 66 6666666666666666666666666666666666 0 1111 6666 7 3333 7 3 99999999 77 66 7 77 6 000 0 1 0 6 7 22 7 0 0 4 7777777 44444444444444444 2 11 4444444444444444444444 9 0 999999999 999999999 4 55 99 6666 999 2 888 0 0 4 444444444444 0 6666666 5 7 3 33333 7 3 0 99 1 000 66 9 000000000 3333333333 88 0 77777777 2222222 0 55555 99 0 00 0 2 2 88 2 66 00000000 999
consensus : TTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAATTATA--A----GA--TACAA---C-CT--AT-GNAAA--TAAAAAAA-TTAAA-CTTAT-CAACGTNTATGGCCCAAATAAAGATGA-TCCTATTTTCTAT-GATAACCTGAAGGATAATATTCTAGCAACTG-A--TTCTTT-AACNAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GAN-TACATTAATATAAATAACCCAAATGCTCGAAAAAGTC-T---TCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACCCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTNATTCGCT-------T-AATACTAGAATTTGGAAAATTTGAAA--AAAGGAAAATCATATTGGAAATTCAACAATTCACTTT-TAAAAGAT--------CATN----------------GA---TA-AAATAAANA--A----TA-CAATNAATCGCGTAAAATTACAATACGCTAAAGAGACGTTTC-----ATAATGACANAAATAATGTTCCAAATGAGGAGT-TACAA-TTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACGTCAAACGACAACAAGACCAAAGGGAAGCAATGC--TATAATGAAATTG---AA---AATC-N--AGAAAAAGAAATCA--TAC----------------------AAAATCATACTTTAATAGAAT--AA-AA-AAAAAGAATTAATNGATATAAGAGAGAAAAAANTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTACAACTT-----CAGGCGTCTAATGGTCAA--ATTTT-AAAAACACAAGATGAAATAC-TT-A--A-GAAACGAAA------CGGTTCTATAAAGAATTATATTCACCTAGGGAAATTAAAAAC--------ATAA-------ACTT-AAATGA--T--ACTT--TTT-CACATTTAAATATA-TCAAAATTGAATGAAAATAAGAAAACATTACTTGAGGGTCCCATTACCTATGAGGAACTGCTA-G-C---TTTTTT---AAAAAATATGTC
Reference ( gi|1 ) : TTTTTTTTAAACGCATATCTTA-----AAT-----GACG-AGTAAT--ATTTCAATTATA--A----GA--TACAA---CATT--AT-GTAA---TGAAAAAA-TTAAA-CTTAT-AAACATATATGGCCCAAATGAAGACGA-TCCTATTTTCTAT-GATAACCTGAAGGAGAATATTCTAGCAACTA-A--TTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCAGGATCCTAATATAGACTGTTTTTGAA-TACATTAATATAAATAGTTCAAATGCTCGAAAAAGAC-T---TCAA-GATTAATTGATTGAATGTGATTTGACAGATTGCTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAGAAAAAAACTCTCAAAAGAAAGCAAGATTTGGCTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTGTTGATATAAAACCAGGATATAAATCTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTTGAAAATTTGAAA--AAAGGAAAATCAGATTGGAAATTCAACAATTCACTTT-TAAAAGA---------CATT----------------GA---TA-AAATAAATA--A----TA-CAATTAACCGCGTAAAATTACAATACGCTAAAGAGACGTATA-----ATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAA-TT-AATATA---AGTCATCAACTATTCTTAGAAGTACTT--TTATT-TGAAATTCGTAGAGTAACTAGTTCTCATTCCTCTTACATCAAACGACAACAAGATCAAAGGGAAGCAATACTATATAATGAAATTT---CA---AATC-A--AGATAAAGAAATCA--TAC----------------------AAAATCATATTTTAATAGAATCCAA-AATAAAAATAATTAATTGATATAAGTGAGAAAAAATTAGACGTGATAAGAATAAGATCACGGTCCAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------CATATATCAAAATCAA-TGTAACAACTT-----CAGGCATCTAATGGTCAA--ATTTT-AAAAACGCAAGA-AAAATAC-TT-A--A-GAAACAAAA------CGAATCTATAAAGAATTATATTCATCTAGGGAAATTAAAAAT--------ATAA-------ACTT-AAATGA--T--ACTT--TTT-CAAATTTAAATATA-TTAAAATTGAATGAAAAAAAGAAAACATTACTTGAGGGTCCCATTACCTATGAGGAACTGCTA-A-C---TTTTTT---AAAAAATATGTC
gi|13 : TTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAATAATA--ATTCGGAATTAAAAGTTCATTCAGT-GGAAACATTAAAAGA-ATAAA-CTTGT-CAACATTTATGGCCGAAATAAAGATGA-TCCTATTTT--AT-GATAACCTGAAGGATATTATTCTAGCATCTG-A--TACTTT-TAAAAT-CAT-TGCTGGAGGCTTCAATGTAGCCCAGGATCCTAATACATACTGTTTT--AATTATATTAATATAAATAACCCAAATAATTGAAAAAG
gi|2 : aaacctttgattttctcaaaagtaaacaatattcaattttacagatacggatataccttttataagtttcaagtggggaaatgatTTATATTA----GA--TACAA---CTCT--AT-GGAA---TAAAAAAAGTTAAA-CTTAT-AAACATATATGGCCCAAATAAAGATGA-TCCTATTTTCTAT-GATAACCTGAAGGTTTATATTTTAGCAACTT----TTATTT-AACCAT-TAT-TGCTGGAGACTTCAAT-TAGCCCTGGATCCTAATATAGACTGTTTT-GAT-TAC--TAA-ATAAAC----TAAATGCTCGAAAA-GTC-T---TTAA-GATTTATGGATTAAATGTAATTTGACAGACTGTTGGCGC-GATCAACTTTTAAAAGAAAAAAA---GTTCACATG-GTTTA---AAAAATCCTCAAAAGAAAGCAAGACTT---TACTTTTTAATTTTAACATATGTAATGATGAATATTGATACTACAGATATAAAACCAGGATGTAGAACTGACCAT-TCTCTTATTCGCTGAATAGCTGAATACTAGAATTTGGAAAATTTGAAA--AAAG-AAAATCATATTAAAAATCCAAC-------TTT-TAAAATATACTAACTGCATA----------------GA---TA-AAATAAAGA--A----TA-CAATTCATCGCGTAAA-TTACAATACGCTAAGGAGACGTTTC-----ATAATGATACAAATAATTTTGTAAATAAGGAGT-TACAA-TTTAATATA---AATGAACAGCTATTTTCAGAAGTGCTA--TTATT-TGAAATTTGTGGAGTAATTATTTCTCATTCCTCTTACATTAAACGACAACAAGATCAAAAGGAAGCATTG------AATTGAAT-----------ACC-T--AGAAAAAGAAATCA--TAT----------------------AAAATCATAACTTTATAGAAT------AT---TTTTTTTTATAGATAT-AGCGAGAAAAAATTAGAAGGGGTACGAATAATTTAACGAGCTAAATGGTTGCAAGAAGGAGAAAA---G-A-A------------------------CAATTTAG-AAAATAAGAAC------TATA-ATCAAAATCAA-TGTTACAACTT-----CAGGCATATAATAGTCAA--ATTT-------------A-AAAAT------------AAACAAGATCGTATCGGCTCTTTAAAGAATTCTATTCACCTAGGTAAATTAAAAAT--------ATAA-------ACTT-GAATGA--T--ACTT--TTA-CATATTTAAATATA-TCAAAATTGAATG-AAAAAAGAAAACATTACTTGATGGTCCAATTACCTATGAGGAACTGCTA-G-C----TTTTA---AAAAAATATGTCt
gi|8 : caaaatgggaataaacTATT--G----GA--AACAA---C--T--ATAGCAAA--TAAAAAAA-T-ACT-CTCATTAAAAGT-TATGGTCCTAATAAAGATGAGCCCTACTTCGT-T-AATCAAATTAAAAATAATATTTTAGC--TTA-AGATACTTT-TTGTAT-TAT-AGCAGGAAATTTCAACCTGGTTTTGAACCCAGATATAGATTGCTAT-GAA-TATATACATTTAAATAATCCAAATGCTCG--AAATAC-TGTATAAG-AATTAA-TGGTGGAATGAAATTTAA
gi|16 : gtccatgaatgtacaggatcttgctgataaaacagatacatttaattttcttaaagaaaaaaaatctctatctattttttacaagacatgcattttacagataaagaaattaataacatacgcattctgtggggctatgaatgttattttagtaattttacaagccagtctagaggagttgccattattttaaataataattttaaatttaatattcactccgaagaaacggatcaaaatggaaacaaactcaT--AT-ATAA----GATAGGA-TCAAAACATTT-CAACGTTCATAGCTCAATTAAACACGA-TCCTGTTCTTAAC-GATAGCATTAAGAATAGTATTCTAGCAACTG-C--GTGTTTGAACAATCCATATGCTAGA
gi|7 : ttcctagccgttctatagacgtagctattatatttaacaatattttttttttcatttagagtacattttatcttaacataaagtggtaaagaggAA---TAAAACAA-TTAAA-CTTAT-CAACAACTATGGCCCAAATACAGATGA-ACCT-----CTATTGCTTACTTGAAGGATAAAATTAAAGTAACTGCG--TTTTAT-AAC-AT-CAT-TACTGAACACTCCAATGTAGCCCTGGATCCTAATATAGATTG-TTTTGAT-TACATTAATAGAACTATCCC---TGCTCGAAAAAGTA-T---TCAT-GAGTTATTGATTAAATGTAATTTGAAAAACTG----------TAAACTTTTACAAGAAAAAAA---
gi|3 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaACATGGTCCAAATAAAGATAA-TCCTATGTTCTAT-GATAACCTGATGGAGAATATTCTAGCAACTA-A--TTCTTT-ACCCAT-CAT-TGCTGGAGACTTCATTATAGCCCTGGA-ACTAATGTAGA-TGTTTT-GAC-TACATTAATATAAATAACCCAAATGCTCGAAATAGTC-T---TTAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTAGCGC-GATCAACATTTAGAAG-AAAAAA---GTTCAAGTG-GTTTAAAAAAAA---CTCAAAAGAAAGCAATACTTGATTACTTTTTTATTTCAGCATGTTTAATGATGGATATTGACACTGTAGATA-AAAAAAAGGATATAGA------------TCTTATTCGCT-------T-AATACTAGAATTTGGAAAATTTG-AA--AAAGGAAAATCATATTGGAAATTCAACAATACACTTT-TAAAAGA---------CATTAACTACATACATGTTAGA---TA-AAATAAACT--A----TA-CAATTAATCGCGTAAATTAACAATACGCTAATGTGACGTTTC-----ATAATGACATAAATAATGTCCCAAATGAGGAGT-TACAGTTT-AATATA---AGTGATTAACTATTTTTATAAATGCTT--TTCCCATAAAATTCGTGAAGTAACTATTGCTCATTCCTCTTACACCAAACGATATCAAGATGAAAGGG--------------AATGAAATT-----G---AATA-ACTAGAAAAAGAAATCA--TAC----------------------AAAATCAAACTT--ATATATACTAAGAATAAAAAAAATGAATAGATATTAGAAAGAAAAAAATAGAAGGAATAAGAATGAGATTACGGAGAAAATGGGTACAAGAAGGAT-AAA---G-A-ACTCTAAATATATATTTTT-TTTTGCAATTTAG-AAAATAGTAAC------TGTACATCAAAATCAA-TGTTATAACTT-------G--ATCAAAT--TAAA--A-----AAAAAATTAAAATGAAATAC-TT-A--AGGAAACGAAA------CGGTTCTATAAATGATTATATTCACCTAGGAAAATTAAAGAT--------ATAA-------ACTT-AAATGG--A--ACGT--TTT-CATCTCTTAATATT-TCAAAATTGAATGAAAATATGAAAACATTACTTGAGGATCCCATTACATATGAAGAACTGCTATATT---TTTTTT---GAAAAAGATGTCcatgtatgatgaaggatattaatactgtagatataaaaccaggatatataactagcaattcagttattcgcttaatacttgaattttt
gi|14 : TT-AAT-AT-TAT-TGTGGGAAATTTAAATATGACTTTGAATCCATATATAGAATGCTATT-AC-TATATTTATGTAACTAATCCAAACGC
gi|15 : tagtaaagcatttttaaagttaacccagaggcgttgcattttttgtttcaaaataagatcgaatttaaactacacttaagatcatcagataatgctggaaataaattgatactatatatatattttatttttttgaaaacaaaatacaattaataaatattgatggaccaataaacataactaatatttcgattagcaattacctaaagctatctcggaggagggacatcAATATAAATAACTTCAATGCTCGAAAAAGTC-T---TCAA-GATTTATTCATTGAATGTAATTT-------TG--AGCGAAGATTAACATTTAGAAGAAAAAAACATGGTGACATG-GT----AAAAAAACTCTCAAAAGACAGCAAG-------T-CTTTTTAATTTCAACATGTTTAATGATGGATATTAATACTGTGAATATAAACCCAGGATATAGAACTCACCAT-TCCCTAACTCGGT-------T-AATACTAGAA-TTTGAAAATTTTGAA--AAAGGAAAATCGTATTGGAAATTCAAC--T--------------A---------CATA----------------GA---TA-AAATAAAAA--A----aagatactatg
gi|11 : AACAATCCATATGCTAGATAA-GACAT---TCTATGGTTTATTAATTGAAAGTAATTTAATAGATTACTGGCGT-ATTCAACACTTAACAGAAATAAA---GTCCATATATGTTCAAAAAA------TCAAAAGAAAGAACGGCTTGGTTTCTTTTTAATTTCAACATGTTTAAGTATGTTTATTGTCACTGCAGATATTAAATCAATATATAGAAGTGATCAT-TCTCTCATTTGCT-------T-AACACTAGAA-TTTGAAAAATAGCGATTAATGGAAA--CATATTGGATATTCAACTATTAACTTT-TAAAAGA---------CATT----------------AACTTTGTAGATAAATA--AGCATTG-CAATAAATCGTGTATAACTACAATATGCTAAACAGACGTTTC-----ATACTTACAACAATAATGTTCCAAATGAGACTT-TCCAATTT-AATATA---AGTGCTCA---ATTTTGAGAAaa
gi|5 : gTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTATAGATATAAAACCAGGATATTGAACTGACCAC-TCTCTGATCCGTT-------T-AATACTTGAATTTGGAAAATTTGAAA--AA-GGAAAATCATATTGGAAATTCAACAATTC------------A---------CATT---------------------TA-AAAGATATA--A-----A-CTAT------------ATT-------------GAGACTTTTA-----ATAATGATACGAATAATGTTCCAAATGCGGAGT-TACAA-TTTAATATA---AGTGATCAACTATTTTTAGAAATGCTT--TTATT-TGAAATTCATGGAGTAACTATTTCTGATTCCTCTTACATCAAACGACAA---GACCAAAGGGAAGCAACACGTTATAATGAAATTG---AA---AACC-T--AGAAAAAGAAATCT--TAC----------------------AAAACAATACTTTAATTAAAT--AA-AA-AAAAAGAATTAATTGATATAAGAGAGAAAAAATTAAAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---GTATACTCAAAAT---------------------TAG-AAAAAAGAAAC------TATACATCAAAATCAA-TATTACAACTT-----CAGGCGTCTAATGGTCAA--ATTTT-AAAAACACAAGATGAAATAC-TT-A--AAGAAACAAAA------CGGTTCTATAAAGAATTATATTCACCCAGGGAAATTAAAAAC--------ATAA-------ATTT-AAATGA--T--ACTT--TTTTCTAATTTAAATATA-TCAAAATTGAATAAAATTAAGAAAACATTACTTGAGGGTCCCATTACCTATGAGGAACTGCTA-G-C---TTTTTT---AAAAAAGATGTCa
gi|7 : tAACATGTATGATGAAGGATATTAATACTGTAGATATAAAACCAGGATATATAACTAGCAAT-TCAGTTATTCGCT-------T-AATACTTGAATTTT
gi|6 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaaataaaacaattaaacttatcaacaactatggcccaaatacagatgaacctctattgcttacttgaaggataaaattaaagtaactgcgttttataacatcattactgaacactccaatgtagccctggatcctaatatagattgttttgattacattaatagaactatccctgctcgaaaaagtattcatgagttattgattaaatgtaatttgaaaaactgtaaacttttacaagaaaaaGATAGATATTGATACAGAAGATATAAAGTCAGGATATAAAACTGACCATGTCTTT------------------ATATCAGAATTTGGAA---CT------------ATATCATATTGGAAATGCAGCAATTCACTTTGTAAA-------------------------------------TA-AAACAAACACTA----TAATAATTAA--GCTTAAA-TTACACTATACTAA-GTGTCGTGTCCTGTCACAATGACATAAATATTGTTCTAAATGAGG--TCTACAC-TTTGATATATTAAGTGATCAATTATTTTCAGAAAT--TTCATTAAT-TGAAATACGAGGAGTTACT--TTCTCATTTCTCTTATGTTGAACAACACCATGATCAACGGGTTGCGATGCTATACATTGAAGTAC---CG---AAAC-A--AAGAACAGAAATCA--TAC----------------------AAAATCATATTTTAA--------------AAAGAGAATGAACAAATATAAGTGAGAAAAAA-TAGA------AGGAATAAGAACACGGACAAAGTGCATGCAAGAAGGAGAATG---G-A-ATTCTAAATA--------CAATTTGCAAATTAG-AAAGTAGGTAT--------TTTATCTAAATCAA-TGCTACAGCTT-----CAGGCACTTCATAGTCAA--ACTTTAAAAAACGCAAGt
gi|9 : TAAATCCAAGATATAGAAGCGATTAT-TCCCTTTTTAGCT-------T-AATTCTAGAATTT-----------AA--AAAGTA---TCATATTGGAAATTCAACAATTCACTTT-TAAAAGATCAGCTA--CAAA----------------GA---TA-AGATAAAGA--A----TA-CAATAAATCGCGTAAAATTACAATACGCTAAAGAGACGTTTC-----ATCATGATAGTTATAATGTTCCAA-TGAGGCTT-TACAT-TTTAATATA---ACGGATCAACTTTTTTCAAAAGTGCTA--TTATT-TGAAATTCGAGGAGTAACTATTTCTCATTACTC---CGTTA--CGATAACAAGACCAAAGGGAAGCAAT----------GAAATT-----G---AAT-----ACGTAGAAAAA-------------------------------AAATCATTCTTTAATAGAAC--------AAGAATAG--AATAGATA-------GAAAAAAC-AG--GT-ATAGGAATAAGATCACGGGCAAATTGGGTGCAAGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAA-AAAAAAGGAACTACTCGTATACATCAAAAgtgtaatacaataaaattaaaatagacataaattatgcttttcatatttaagtatactacagatgaataagtataataacataataacgcacggtgaactactggct
gi|4 : CCAGGATATAGAACTGACCCT-TATTTGATCCGTT-------T-AATACTTGAATTTGGAAAATTTGAAA--AA-GGAAAATCATATTGGAAATTCAACAATACACTTT-TAAAAGATATAAACTACATT----------------GA---TA-AAATAAAGA--A----TA-CAATAAACCGCGTAAAATTACAATACGCTAAAGAGACGTTTA-----ATAATGATATAAATAATGTTCCAAATGCGGAGT-TACAA-TTTGATATA---AGTGATCAACTATTTTAAGAAGTGTTT--TTATT-TTAAATTCGTGGAGTACCTATTTCTCATTCCTCTTACATCAAACGCCAACAAGACCAAAGGGAAGCTATACTTTATAATGAAATTG---AA---AATC-T--AGAAAAAGAAATCT--TACTTTTTTTCTTTTTTCTTTCTTCAAAACCATACTTTAAAAGAAT---A-AA-AAAAAGAATTTATTGATATAAGAGAGAAAAAATAAGAAGGGATAAGAATAAGATAACGGACATAATGGGTACAAGAAGGAGAAAA---G-A-ACTCTTAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTACAACTT-----CAAGCATCTAATGGTTAA--ATTTT-TAAAACACAAGATGAAATAC-TGAA--A-GAAACAAAA------CGGTTCTATAAAGAATTATATTCAATTAGGGAAATTAAAAAC--------ATAA-------ACTC-AAATGA--T--ACTT--TTT-CACATTTAAATATA-TCAAAATTGAACGAAATTAAGAAAACATTACTCGAGGGTCCCATTACCTATGAGGAACTGCTT-G-T---TTTTTTTTCGAAAATTATGT
gi|12 : TCATGAAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAACGGAAGCAATACTTTATAATGAAATTG---AA---AATCTA--AAATAAAGAAATCA--TAC----------------------AAAACCATACTTTAATAGAAT--AA-AAAAAAAAT--------GATATAAAACAGAAAAA--TAGAAGGGATAAGAATAAGAGCACGGGCAAAATGGGTTCATGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-TAAATAGGAAC------TATACATAAAAATCGA-TGTTACAACTT-----CAGACGTCTAATAGTCAA--ATTTT-AAAAACATAAGA-AAAATAC-TTAA--A-GAAACAAAA------
gi|21 : CAAGATCAAAGGGAAGCAAT----------GAAACTG---AA---CACC-C--AGAAAAGGAAATCA--TAC----------------------AAAATCATACTTAATTAGAAGTTTT-AACAAAAAGAATGAATtttcacatttaaatatatcgaaagtgaatgaaactaagaaaacattacttgagggtcccattaccgatgaggaactgttagctttttttaaaaaaatatgc
gi|10 : ATGCAATATAATTAAAATTATGCAGAAAATT-A---GAAAAAGAA--CAACTAC----------------------AAGATAACATTACTATTGATTCTAA-AAGAAAAG-AACTATATGATATAAGACAAAAGAAAATGGAAAGGAAAAAGATAAGATCAAAAATTAAATGGATTACTGAAGTGGAAAAAGTG-A----CTAATTA--------T-TTTTGTAATTTAGAAAAATAAAAAC------TTTTTATCAAAAGCAATTGT--CAGCTTAATTACAAAC----AATGG--AACCGTTTT-TACTACA-AAAA-AAGATATATT-ATCT-GAAACAAAG------GCTTTTTATCAAAAATTGTATTC-T-------AATCAAGATTTCACTCCGGTAA-------ACTT-GACTGATTT--GCTC--TCT-C--ATCTAAATATACCTAAGCTTG-GTGAACACTCTAAACTTCTACTTGAAGGACCTATTACAAATGATGAAATGTTA-A-CAAGTCTT------AAAAATAT
gi|19 : AAAACACAGGATAAAATAT-TA-A--A-GAAACGAAA------CGGTTCTATGAAGAATTATATTCATCTAGGGAAATTAAAAAT--------ATAA-------ACTTAAAATGA--A--ACTT--TTT-CACATTTAAATACA-TCAAAATTGAATGAAAATGATAAAACA
gi|12 : TTAAAAAC--------ATAAGAAAAATACTT-AAA-GA--A--ACAAAATTT-CACATTTAAATATA-TCGAAAGTGAATGAAACTAAGAAAACATTACTTGAGGGTCCCATTACCGATGAGGAACTGTTA-G-C---TTTTTTTA-AAAAAATATGc
gi|20 : tcatgaagtaactatttctcattcctcttacatcaaacgacaacaagaccaaacggaagcaatactttataatgaaattgaaaatctaaaataaagaaatcatacaaaaccatactttaatagaataaaaaaaaaatgatataaaacagaaaaatagaagggataagaataagagcacgggcaaaatgggttcatgaaggataaaagaactctaaatatttttgcaatttagtaaataggaactatacataaaaatcgatgttacaacttcagacgtctaatagtcaaattTAA-------ACTT-GACTGA--TTTGCTC--TCT-CA--TCTAAATATACCTAGGCTTG-ATGAACACACTAAACTTCTACTTGAAGGACCTATTACAAATGATGAAATATTA-A-CA--AGTCTT---AAAAAc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCATCTAAATATATATCGGGATTCAACTTCTGTAAACATGGCTGATTTGCTCTCTCATCTAAATATACATGTACCTTAGAATGGTGAACAATCTTAACTTTAACTTGATGGACTATTACAAAGGATGAA
Unaligned ( gi|18 ): AAACGATCAAGATAAAATTATTAAGGAAACAGTAAAATTCTATAAAAAAAAATGAAACTGTAGAAGTAGATTTAAATAATATATTTTCTGATATTAATGTCCCTAAGCTAAATAATGACTTGAAAAAATCACTTGAAGGTC
Unaligned ( gi|22 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCGTCTAAATATAC
Unaligned ( gi|23 ): TATAACATATGAAGAAATATTGGGCTGTCTGAAGAATATGTCAAAT
Alignments
lowQualScore : 222 1111 111 111 77777777777777777777777777777777777777777777777777777 111 1111 111 33333 1111111 11111 11111 88888888888888888888888888888888 1111 4444444444444 11111 3333333333333333333333 111111111111 1111111111 1 1111111111 111111 111111 1111111111 1111111 11 1111 111
lowQualScore : 333 8 7 3 1111 7 777 1 444 00000000000000000000000000000000000000000000000000000 000 6 7 1 3 3 1 0 77 555 11 5555 0 0 66 66 77 11 5 88 5 5 5 0 5 5 1 0 0 5 1 1 77 77 111 8 0 11111 3 999 3 4 4 3333333 4 9 1 33333 4 1 11111 1 4 0 88888888888888888888888888888888 777 1 66 5 0 66 6 0 999 0000 5 1 3 5 888 2 77 5 2 3333333333333 55 00000 1 2 1 4 55 5555555555555555555555 55 8 4 000000000000 1 6666666666 1 2 0 6 777 4 4 0 8888888888 4 222222 1 5 888 0 777 66 5 4 66 55 999999 0 77 1 2222222222 3333333 4 2 0 66 4 777 5 0 66 4444 555
lowQualScore : ... . . . .... . ... . ... ..................................................... ... . . . . . . . .. ... .. .... . . .. .. .. .. . .. . . . . . . . . . . . . .. .. ... . . ..... . ... . . . ....... . . . ..... . . ..... . . . ................................ ... . .. . . .. . . ... .... . . . . ... . .. . . ............. .. ..... . . . . .. ...................... .. . . ............ . .......... . . . . ... . . . .......... . ...... . . ... . ... .. . . .. .. ...... . .. . .......... ....... . . . .. . ... . . .. .... ...
lowQualScore : 333 3 3 7 7777 3 333 0 000 22222222222222222222222222222222222222222222222222222 888 7 3 7 0 7 0 4 22 999 66 6666 5 4 99 99 00 00 0 44 0 0 3 1 3 7 0 2 7 7 7 0 33 77 777 0 8 22222 8 777 5 0 9 0000000 0 4 8 11111 7 1 33333 1 4 1 33333333333333333333333333333333 888 0 99 9 9 99 5 4 111 6666 0 0 1 0 888 2 99 7 0 4444444444444 55 00000 2 0 0 0 55 5555555555555555555555 55 0 0 666666666666 6 9999999999 2 0 1 9 888 4 4 1 6666666666 4 888888 9 0 888 4 666 99 0 4 11 77 555555 4 99 7 4444444444 0000000 0 3 9 55 0 000 0 5 99 1111 666
consensus : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAAT---TAT--------A--A----GA--TACAAC-CT------AT-GGAAA----------TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTAT----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTT-TAAAAGA--------T--------CA-------TA----GAT---AAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-TTAATAGAA---T--AAAA--AAAAAGAA------TTA-AT-GATATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
Reference ( family-4311 ) : TTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAAT---TAT--------A--A----GA--TACAAC-CT------AT-GNAAA----------TAAAA-A-AA-TTAAACTTATCAACGTNTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTAT----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACNAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACCCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTNATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTT-TAAAAGA--------T--------CA-------TN----GAT---AAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGACANAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACGTCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAATCNAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-TTAATAGAA---T--AAAA--AAAAAGAA------TTA-ATNGATATAAGAGAGAAAAAANTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
gi|1 : TTTTTTTTAAACGCATATCTTA-----AAT-----GACG-AGTAAT--ATTTCAAT---TAT--------A--A----GA--TACAACATT------AT-GTAA-----------TGAAA-A-AA-TTAAACTTATAAACATATATGGCCCAAATGAAGACGA-TCCTA-T-TTTCTAT----GATAACCTGAAGGAGAATATTCTAGC--A--ACTA-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCAGGATCCTAATATAGACTGTTTTTGAATACATTAATATAAATAGTTCAAATGCTCGAAAAAGACTTCAA-GATTAATTGATTGAATGTGATTTGACAGATTGCTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAGAAAAAAACTCTCAAAAGAAAGCAAGATTTGGCTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTGTTGATATAAAACCAGGATATAAATCTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTTGAAAAT-TTGAAAAAAGGAAAATCAGATTGGAAATTCAACAATTCACTTT-TAAAAGA-----------------CA-------TT----GAT---AAAATAAATAAT--ACAATTAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----A-TAATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAA-TTAATATA---AGTCATCAACTATTCTTAGAAGTACTT--TTATT-TGAAATTCGTAGAGTAACTAGTTCTCATTCCTCTTACATCAAACGACAACAAGATCAAAGGGAAGCAATACTAT--ATA-AT-GAAAT--T-----TCAAATCAAGAT-AAAGAAATCA--TAC----------------------AAAAT--CAT-ATT-TTAATAGAA---TCCAAAAT-AAAAATAA------TTA-ATTGATATAAGTGAGAAAAAATTAGACGTGATAAGAATAAGATCACGGTCCAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------CATATATCAAAATCAA-TGTAA---CAACTTCAGGCATCTAATGGTCAA--ATTTT-AAAA-ACG--CAAGA-AAAATACT-T-AA-GAAACAAAACGA--ATCTATAAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTT-AAATGATACTT--TTT-CAAATTTAAATATATTAAAATTGAATGAAAA---AAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAAC---TTTTTT---AAAAAATATGTC
gi|10 : ATGCAAT--ATA-ATTAAAAT--TATGCAGAAAAT-TAGAA-AAAGAA--CAACTAC----------------------AAGATAACATTACTATTGATTC-----T--AAAA--GAAAAGAA------CTATAT-GATATAAGACAAAAGAAAATGGAAAGGAAAAAGATAAGATCAAAAATTAAATGGATTACTGAAGTGGAAAAAGTG-A----CTAATTA--------T-TTTTGTAATTTAGAAAAATAAAAAC------TTTTTATCAAAAGCAATTGTCAGCTTAATTACAAAC----AATGG--AACCGTTTT-TACT-ACA--AAAAAAGATATATTAT-CT-GAAACAAA--GGCTTTTTATCAAAAATTGTATT---CT-----AATCAAGATTTCACTCCGGTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAAGCTTGGTGAACACTCT----AAACTTCTACTTGAAGGACCTATTACAAATGATGAAATGT--TAACAAGTCTT------AAAAATAT
gi|11 : AACAATCCATATGCTAGATAAGACATTCTATGGTTTATTAATTGAAAGTAATTTAATAGATTACTGGCGT-ATTCAACACTTAACAGAAATAAA---GTCCATATATGTTCAAAAAA------TCAAAAGAAAGAACGGCTTGGTTTCTTTTTAATTTCAACATGTTTAAGTATGTTTATTGTCACTGCAGATATTAAATCAATATATAGAAGTGATCAT-TCTCTCATTTGCT-------T-AACACTAGAATTTGAAAAATAGCGATTAATGGAAA--CATATTGGATATTCAACTATTAACTTT-TAAAAGACATTAACTT--------TG-------TA----GAT----AAATAAGCATT--GCAATAAATC--GTGTATAACTACAATATGCTAAA--CAGACGT----T-TCATACTTACAACAATAATGTTCCAAATGAGACTT-TCCAATTTAATATA---AGTGCTCA---ATTTTGAGAA
gi|12 : gTCATGAAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAACGGAAGCAATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAAAATAAAGAAATCA--TAC----------------------AAAAC--CAT-ACT-TTAATAGAA---T--AAAA--AAAAA-------------AT-GATATAAAACAGAAAAA--TAGAAGGGATAAGAATAAGAGCACGGGCAAAATGGGTTCATGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-TAAATAGGAAC------TATACATAAAAATCGA-TGTTA---CAACTTCAGACGTCTAATAGTCAA--ATTTT-AAAA-ACA--TAAGA-AAAATACT-TAAA-GAAACAAAAa
gi|12 : TTAAAA----AC----ATAAGAAAAATACTT-AAA-GAAACAAAATTT-CACATTTAAATATATCGAAAGTGAATGAAAC---TAAGAAAACAT-TACTTGAGGGTCCCATTACCGATGAGGAACTGT--TAGC---TTTTTTTA-AAAAAATATGtttcacatttaaatatatcgaaagtgaatgaaactaagaaaacattacttgagggtcccattaccgatgaggaactgttagctttttttaaaaaaatatgc
gi|13 : tcatgaagtaactatttctcattcctcttacatcaaacgacaacaagaccaaacggaagcaatactttataatgaaattgaaaatctaaaataaagaaatcatacaaaaccatactttaatagaataaaaaaaaaatgatataaaacagaaaaatagaagggataagaataagagcacgggcaaaatgggttcatgaaggataaaagaactctaaatatttttgcaatttagtaaataggaactatacataaaaatcgatgttacaacttcagacgtctaatagtcaaattTTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAAT---AAT--------A--ATTCGGAATTAAAAG-TTCATTCAGT-GGAAACAT-------TAAAA-G-AA-T-AAACTTGTCAACATTTATGGCCGAAATAAAGATGA-TCCTA-T-TTT--AT----GATAACCTGAAGGATATTATTCTAGC--A--TCTG-ATACTTT-TAAAAT-CAT-TGCTGGAGGCTTCAATGTAGCCCAGGATCCTAATACATACTGTTTT-AATTATATTAATATAAATAACCCAAATAATTGAAAAAGTc
gi|14 : aaacctttgattttctcaaaagtaaacaatattcaattttacagatacggatataccttttataagtttcaagtggggaaatgatT-GAAAA----------CAAAATACAA-TTAA---TA--AATATTGATGGACCAA-TAAACATAA---CTAATATTTCGATTAGCAATTACCTAAAGC----TAT-CTCGG--AGGAGGG-ACATCTT-AA-TAT-TAT-TGTGGGAAATTTAAATATGACTTTGAATCCATATATAGAATGCTAT-TACTATATTTATGTAACTAATCCAAACGC
gi|15 : tagtaaagcatttttaaagttaacccagaggcgttgcattttttgtttcaaaataagatcgaatttaaactacacttaagatcatcagataatgctggaaataaattgatactatatatatattttattttttAATATAAATAACTTCAATGCTCGAAAAAGTCTTCAA-GATTTATTCATTGAATGTAATTT-------TG--AGCGAAGATTAACATTTAGAAGAAAAAAACATGGTGACATG-GT----AAAAAAACTCTCAAAAGACAGCAAG-------T-CTTTTTAATTTCAACATGTTTAATGATGGATATTAATACTGTGAATATAAACCCAGGATATAGAACTCACCAT-TCCCTAACTCGGT-------T-AATACTAGAATTT-GAAAAT-TTTGAAAAAGGAAAATCGTATTGGAAATTCAAC-----------TA----------------------CA-------TA----GAT---AAAATAAAAAAaagatactatg
gi|16 : AAACATTTCAACGTTCATAGCTCAATTAAACACGA-TCCTG-T-TCTTAAC----GATAGCATTAAGAATAGTATTCTAGC--A--ACTG-CGTGTTTGAACAATCCATATGCTAGAaa
gi|19 : ttcctagccgttctatagacgtagctattatatttaacaatattttttttttcatttagagtacattttatcttaacataaagtggtaaagaggtatataagataggatcaAAA-ACA--CAGGATAAAATATT-A-AA-GAAACGAAACGG--TTCTATGAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTTAAAATGAAACTT--TTT-CACATTTAAATACATCAAAATTGAATGAAAA---TGATAAAACA
gi|2 : T---TAT--------ATTA----GA--TACAACTCT------AT-GGAA-----------TAAAA-A-AAGTTAAACTTATAAACATATATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTAT----GATAACCTGAAGGTTTATATTTTAGC--A--ACTT--TTATTT-AACCAT-TAT-TGCTGGAGACTTCAAT-TAGCCCTGGATCCTAATATAGACTGTTTT-GATTAC-------TAAATAAACTAAATGCTCGAAAA-GTCTTTAA-GATTTATGGATTAAATGTAATTTGACAGACTGTTGGCGC-GATCAACTTTTAAAAGAAAAAAA---GTTCACATG-GTTTAAAAAA---TCCTCAAAAGAAAGCAAGACTT---TACTTTTTAATTTTAACATATGTAATGATGAATATTGATACTACAGATATAAAACCAGGATGTAGAACTGACCAT-TCTCTTATTCGCTGAATAGCTGAATACTAGAATTTGGAAAAT-TTGAAAAAAG-AAAATCATATTAAAAATCCAAC-------TTT-TAAAATA--------TACTAACTGCA-------TA----GAT---AAAATAAAGAAT--ACAATTCATC--GCGTAAA-TTACAATACGCTAAG--GAGACGT----T-TCATAATGATACAAATAATTTTGTAAATAAGGAGT-TACAATTTAATATA---AATGAACAGCTATTTTCAGAAGTGCTA--TTATT-TGAAATTTGTGGAGTAATTATTTCTCATTCCTCTTACATTAAACGACAACAAGATCAAAAGGAAGCATTG---------------AAT--T-----GAATACCTAGAA-AAAGAAATCA--TAT----------------------AAAAT--CATAACT-TT-ATAGAA---T---------------ATTTTTTTTT-ATAGATAT-AGCGAGAAAAAATTAGAAGGGGTACGAATAATTTAACGAGCTAAATGGTTGCAAGAAGGAGAAAA---G-A-A------------------------CAATTTAG-AAAATAAGAAC------TATA-ATCAAAATCAA-TGTTA---CAACTTCAGGCATATAATAGTCAA--ATTTA-AAAATAAA--CAAGAT------------------CGTATCGG--CTCTTTAAAGAATTCTATTCACCTAGGTAAATTAAAA----AT----ATAA-------ACTT-GAATGATACTT--TTA-CATATTTAAATATATCAAAATTGAATGAAAA----AAGAAAACAT-TACTTGATGGTCCAATTACCTATGAGGAACTGC--TAGC----TTTTA---AAAAAATATGTCc
gi|20 : caaaatgggaataaacTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAGGCTTGATGAACA---CACTAAACTTC-TACTTGAAGGACCTATTACAAATGATGAAATAT--TAACA--AGTCTT---AAAAA
gi|21 : tccactccggCAAGATCAAAGGGAAGCAATG--------------AAAC--T-----GAACACCCAGAA-AAGGAAATCA--TAC----------------------AAAAT--CAT-ACT-TAATTAGAAGTTT--TAAC--AAAAAGAA------TGA-AT
gi|3 : ATGGTCCAAATAAAGATAA-TCCTA-T-GTTCTAT----GATAACCTGATGGAGAATATTCTAGC--A--ACTA-ATTCTTT-ACCCAT-CAT-TGCTGGAGACTTCATTATAGCCCTGGA-ACTAATGTAGA-TGTTTT-GACTACATTAATATAAATAACCCAAATGCTCGAAATAGTCTTTAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTAGCGC-GATCAACATTTAGAAG-AAAAAA---GTTCAAGTG-GTTTAAAAAAAA---CTCAAAAGAAAGCAATACTTGATTACTTTTTTATTTCAGCATGTTTAATGATGGATATTGACACTGTAGATA-AAAAAAAGGATATAGA------------TCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTG-AAAAAGGAAAATCATATTGGAAATTCAACAATACACTTT-TAAAAGA--------CATTAACTACATACATGTTA----GAT---AAAATAAACTAT--ACAATTAATC--GCGTAAATTAACAATACGCTAAT--GTGACGT----T-TCATAATGACATAAATAATGTCCCAAATGAGGAGT-TACAGTTTAATATA---AGTGATTAACTATTTTTATAAATGCTT--TTCCCATAAAATTCGTGAAGTAACTATTGCTCATTCCTCTTACACCAAACGATATCAAGATGAAAGGG----------------A-AT-GAAAT--T-----GAATAACTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAA-ACT-TATATATAC---T--AAGAATAAAAAAAA------TGA-ATAGATATTAGAAAGAAAAAAATAGAAGGAATAAGAATGAGATTACGGAGAAAATGGGTACAAGAAGGAT-AAA---G-A-ACTCTAAATATATATTTTT-TTTTGCAATTTAG-AAAATAGTAAC------TGTACATCAAAATCAA-TGTTA---TAACT------------TGATCAA--ATTAA-AAAA-AAAATTAAAATGAAATACT-T-AAGGAAACGAAACGG--TTCTATAAATGATTATATTCACCTAGGAAAATTAAAG----AT----ATAA-------ACTT-AAATGGAACGT--TTT-CATCTCTTAATATTTCAAAATTGAATGAAAA---TATGAAAACAT-TACTTGAGGATCCCATTACATATGAAGAACTGCTATATT---TTTTTT---GAAAAAGATGTC
gi|4 : acCCAGGATATAGAACTGACCCT-TATTTGATCCGTT-------T-AATACTTGAATTTGGAAAAT-TTGAAAAA-GGAAAATCATATTGGAAATTCAACAATACACTTT-TAAAAGA--------TATAAACTACA-------TT----GAT---AAAATAAAGAAT--ACAATAAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TAATAATGATATAAATAATGTTCCAAATGCGGAGT-TACAATTTGATATA---AGTGATCAACTATTTTAAGAAGTGTTT--TTATT-TTAAATTCGTGGAGTACCTATTTCTCATTCCTCTTACATCAAACGCCAACAAGACCAAAGGGAAGCTATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAGAA-AAAGAAATCT--TACTTTTTTTCTTTTTTCTTTCTTCAAAAC--CAT-ACT-TTAAAAGAA---T--AAAA---AAAAGAA------TTT-ATTGATATAAGAGAGAAAAAATAAGAAGGGATAAGAATAAGATAACGGACATAATGGGTACAAGAAGGAGAAAA---G-A-ACTCTTAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAAGCATCTAATGGTTAA--ATTTT-TAAA-ACA--CAAGATGAAATACT-GAAA-GAAACAAAACGG--TTCTATAAAGAATTATATTCAATTAGGGAAATTAAAA----AC----ATAA-------ACTC-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAACGAAAT---TAAGAAAACAT-TACTCGAGGGTCCCATTACCTATGAGGAACTGC--TTGT---TTTTTTTTCGAAAATTATGT
gi|5 : TTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTATAGATATAAAACCAGGATATTGAACTGACCAC-TCTCTGATCCGTT-------T-AATACTTGAATTT-----------------GGAAAAT----TTGAAAA-----------A------GGAAAA--------T--------CA-------T------ATTGGAAATTCAACAATTCACATTTAA--------AAGAT----ATAAACTATATTGAGACTT----T-TAATAATGATACGAATAATGTTCCAAATGCGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTTAGAAATGCTT--TTATT-TGAAATTCATGGAGTAACTATTTCTGATTCCTCTTACATCAAACGACAA---GACCAAAGGGAAGCAACACGTT--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCT--TAC----------------------AAAAC--AAT-ACT-TTAATTAAA---T--AAAA--AAAAAGAA------TTA-ATTGATATAAGAGAGAAAAAATTAAAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---GTATACTCAAAAT---------------------TAG-AAAAAAGAAAC------TATACATCAAAATCAA-TATTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AAAGAAACAAAACGG--TTCTATAAAGAATTATATTCACCCAGGGAAATTAAAA----AC----ATAA-------ATTT-AAATGATACTT--TTTTCTAATTTAAATATATCAAAATTGAATAAAAT---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAAGATGTC
gi|6 : GATAGATATTGATACAGAAGATATAAAGTCAGGATATAAAACTGACCATGTCTTT------------------ATATCAGAATTTGGAA----CT----------ATATCATATTGGAAATGCAGCAATTCACTTTGTAAA-------------------------------------T---AAAACAAACACT--ATAAT-AATTAAGCTTAAA-TTACACTATACTAA---GTGTCGTGTCCTGTCACAATGACATAAATATTGTTCTAAATGAGG--TCTACACTTTGATATATTAAGTGATCAATTATTTTCAGAAAT--TTCATTAAT-TGAAATACGAGGAGTTACT--TTCTCATTTCTCTTATGTTGAACAACACCATGATCAACGGGTTGCGATGC--T--ATACATTGAAGTACC-----GAAA--CAAAGA-ACAGAAATCA--TAC----------------------AAAAT--CAT-ATT-TTAA-----------------AAAGAGAA------TGA-ACAAATATAAGTGAGAAAAAA-TAGAAGGAATAAGAA------CACGGACAAAGTGCATGCAAGAAGGAGAATG---G-A-ATTCTAAATA--------CAATTTGCAAATTAG-AAAGTAGGTAT------TTT--ATCTAAATCAA-TGCTA---CAGCTTCAGGCACTTCATAGTCAA--ACTTTAAAAA-ACG--CAAGGTGTAATAC
gi|6 : AAATTAAA-----------ATAG-------ACAT-AAATTATGC-T--TTT-CATATTTAAGTATACTACAGATGAATAAGTA---TAATAAaataaaattaaaatagacataaattatgcttttcatatttaagtatactacagatgaataagtataataacataataacgcacggtgaactactggct
gi|7 : gatagatattgatacagaagatataaagtcaggatataaaactgaccatgtctttatatcagaatttggaactatatcatattggaaatgcagcaattcactttgtaaataaaacaaacactataataattaagcttaaattacactatactaagtgtcgtgtcctgtcacaatgacataaatattgttctaaatgaggtctacactttgatatattaagtgatcaattattttcagaaatttcattaattgaaatacgaggagttactttctcatttctcttatgttgaacaacaccatgatcaacgggttgcgatgctatacattgaagtaccgaaacaaagaacagaaatcatacaaaatcatattttaaaaagagaatgaacaaatataagtgagaaaaaatagaaggaataagaacacggacaaagtgcatgcaagaaggagaatggaattctaaatacaatttgcaaattagaaagtaggtattttatctaaatcaatgctacagcttcaggcacttcatagtcaaactttaaaaaacgcaaggtgtaatacaataTTTTTA---GCATTTTTTCTAGCTGGCCTAGAGGTGTAGCTATGCTTTTCAATACTTATTGGAATTTA--A----AA--TAAATT-CC------GT-GGAAACAGACCAAAATAAAA-C-AA-TTAAACTTATCAACAACTATGGCCCAAATACAGATGA-ACCT-------CTATT---GCTTACTTGAAGGATAAAATTAAAGT--A--ACTGCGTTTTAT-AAC-AT-CAT-TACTGAACACTCCAATGTAGCCCTGGATCCTAATATAGATTGTTTT-GATTACATTAATAGAACTATCCC---TGCTCGAAAAAGTATTCAT-GAGTTATTGATTAAATGTAATTTGAAAAACTGT--------A--AACTTTTACAAGAAAAAAA---cataataacgcacggtgaactactggct
gi|7 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaataAACATGTATGATGAAGGATATTAATACTGTAGATATAAAACCAGGATATATAACTAGCAAT-TCAGTTATTCGCT-------T-AATACTTGAATTTcatgtatgatgaaggatattaatactgtagatataaaaccaggatatataactagcaattcagttattcgcttaatacttgaattttt
gi|8 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaaataaaacaattaaacttatcaacaactatggcccaaatacagatgaacctctattgcttacttgaaggataaaattaaagtaactgcgttttataacatcattactgaacactccaatgtagccctggatcctaatatagattgttttgattacattaatagaactatccctgctcgaaaaagtattcatgagttattgattaaatgtaatttgaaaaactgtaaacttttacaagaaaaa---TAT--------T--G----GA--AACAAC--T------ATAGCAAA----------TAAAA-A-AA-T-ACTCTCATTAAAAGTTATGGTCCTAATAAAGATGAGCCCTA-C-TTCGT-T----AATCAAATTAAAAATAATATTTTAGCTTA--A--G-ATACTTT-TTGTAT-TAT-AGCAGGAAATTTCAACCTGGTTTTGAACCCAGATATAGATTGCTAT-GAATATATACATTTAAATAATCCAAATGCTCGAAATACTGTATAA-GAATTAATGGTGGAATGAAATTTAAtt
gi|9 : gtccatgaatgtacaggatcttgctgataaaacagatacatttaattttcttaaagaaaaaaaatctctatctattttttacaagacatgcattttacagataaagaaattaataacatacgcattctgtggggctatgaatgttattttagtaattttacaagccagtctagaggagttgccattattttaaataataattttaaatttaatattcactccgaagaaacggatcaaaatggaaacaaactcaTAAATCCAAGATATAGAAGCGATTAT-TCCCTTTTTAGCT-------T-AATTCTAGAATTT------------AAAAAGTA---TCATATTGGAAATTCAACAATTCACTTT-TAAAAGA--------T--------CAGC-----TACAAAGAT---AAGATAAAGAAT--ACAATAAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATCATGATAGTTATAATGTTCCAA-TGAGGCTT-TACATTTTAATATA---ACGGATCAACTTTTTTCAAAAGTGCTA--TTATT-TGAAATTCGAGGAGTAACTATTTCTCATTACTC---CGTTA--CGATAACAAGACCAAAGGGAAGCAATG--------------AAAT--T-----GAATACGTAGAA-AAA-----------------------------------AAAT--CAT-TCT-TTAATAGAA---C--AAGA--ATA--GAA------T------------AGATAGAAAAAAC----AGGTATAGGAATAAGATCACGGGCAAATTGGGTGCAAGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAA-AAAAAAGGAACTACTCGTATACATCAAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCATCTAAATATATATCGGGATTCAACTTCTGTAAACATGGCTGATTTGCTCTCTCATCTAAATATACATGTACCTTAGAATGGTGAACAATCTTAACTTTAACTTGATGGACTATTACAAAGGATGAA
Unaligned ( gi|18 ): AAACGATCAAGATAAAATTATTAAGGAAACAGTAAAATTCTATAAAAAAAAATGAAACTGTAGAAGTAGATTTAAATAATATATTTTCTGATATTAATGTCCCTAAGCTAAATAATGACTTGAAAAAATCACTTGAAGGTC
Unaligned ( gi|22 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCGTCTAAATATAC
Unaligned ( gi|23 ): TATAACATATGAAGAAATATTGGGCTGTCTGAAGAATATGTCAAAT
Alignments
lowQualScore : 222 3333 333 111 55555555555555555555555555555555555555555555555555555555 111 1111 111 22222 1111111 11111 11111 88888888888888888888888888888888 1111 4444444444444 11111 3333333333333333333333 22222222222222 1111111111 111111 111111 1111111111 1111111 11 1111 111
lowQualScore : 333 7 44 1111 7 444 777 99999999999999999999999999999999999999999999999999999999 000 6 7 1 3 0 0 77 555 11 5 0000 0 0 66 66 77 11 5 99 5 5 5 0 5 5 1 0 0 5 1 1 77 77 111 8 0 88888 3 999 3 4 4 3333333 4 9 1 33333 4 1 11111 1 0 0 00000000000000000000000000000000 1 66 5 0 66 6 0 999 0000 5 1 3 5 888 2 77 5 3333333333333 55 00000 1 1 4 55 5555555555555555555555 55 8 4 4 4 8888 8888888 4 1 77777777777777 4 2 0 55 777 4 4 0 8888888888 4 222222 1 5 888 0 777 66 5 4 66 55 999999 0 77 1 2222222222 3333333 4 2 0 66 4 777 5 0 66 4444 555
lowQualScore : ... . .. .... . ... ... ........................................................ ... . . . . . . .. ... .. . .... . . .. .. .. .. . .. . . . . . . . . . . . . .. .. ... . . ..... . ... . . . ....... . . . ..... . . ..... . . . ................................ . .. . . .. . . ... .... . . . . ... . .. . ............. .. ..... . . . .. ...................... .. . . . . .... ....... . . .............. . . . .. ... . . . .......... . ...... . . ... . ... .. . . .. .. ...... . .. . .......... ....... . . . .. . ... . . .. .... ...
lowQualScore : 333 3 33 3333 3 333 555 77777777777777777777777777777777777777777777777777777777 888 7 3 7 0 6 4 22 999 66 0 6666 5 4 99 99 00 00 0 00 0 0 3 1 3 7 0 2 7 7 7 0 33 77 777 0 8 44444 8 777 5 0 8 0000000 0 4 8 11111 7 1 33333 1 8 1 77777777777777777777777777777777 0 99 9 9 99 5 4 111 6666 0 0 1 0 888 2 99 7 4444444444444 55 00000 2 4 0 55 5555555555555555555555 55 0 0 0 0 5555 3333333 0 6 00000000000000 4 0 1 99 888 4 4 1 6666666666 4 888888 9 0 888 4 666 99 0 4 11 77 555555 4 99 7 4444444444 0000000 0 3 9 55 0 000 0 5 99 1111 666
consensus : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CA-------TA----GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA------TTA-A-T-GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
Reference ( family-4311 ) : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CA-------TA----GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA------TTA-A-T-GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
gi|1 : TTTTTTTTAAACGCATATCTTA-----AAT-----GACG-AGTAAT--ATTTCAA---TTA--------TA--A----GA--TACAACATT------ATGT----------AA----TGAAA-A-AA-TTAAACTTATAAACATATATGGCCCAAATGAAGACGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGAGAATATTCTAGC--A--ACTA-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCAGGATCCTAATATAGACTGTTTTTGAATACATTAATATAAATAGTTCAAATGCTCGAAAAAGACTTCAA-GATTAATTGATTGAATGTGATTTGACAGATTGCTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAGAAAAAAACTCTCAAAAGAAAGCAAGATTTGGCTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTGTTGATATAAAACCAGGATATAAATCTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTTGAAAAT-TTGAAAAAAGGAAAATCAGATTGGAAATTCAACAATTCACTTTTAAAAGA-----------------CA-------TT----GATAAAATAAATAAT--ACAATTAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----A-TAATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAA-TTAATATA---AGTCATCAACTATTCTTAGAAGTACTT--TTATT-TGAAATTCGTAGAGTAACTAGTTCTCATTCCTCTTACATCAAACGACAACAAGATCAAAGGGAAGCAATACTAT--ATA-AT-GAAAT--T-----TCAAATCAAGAT-AAAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-AT----AGAA---TCCAAAATAAAAATAA------TTA-ATT-GA-TATAAGTGAGAAAAAATTAGACGTGATAAGAATAAGATCACGGTCCAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------CATATATCAAAATCAA-TGTAA---CAACTTCAGGCATCTAATGGTCAA--ATTTT-AAAA-ACG--CAAGA-AAAATACT-T-AA-GAAACAAAACGA--ATCTATAAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTT-AAATGATACTT--TTT-CAAATTTAAATATATTAAAATTGAATGAAAA---AAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAAC---TTTTTT---AAAAAATATGTC
gi|10 : ATGCAAT--ATA-ATTAAAAT--TATGCAGAAAAT-TAGAA-AAAGAA--CAACTAC----------------------AAGATAACATTACTAT-TG-AT----TC-----T--AAAA-GAAAAGAA------CTATA-T-GA-TATAAGACAAAAGAAAATGGAAAGGAAAAAGATAAGATCAAAAATTAAATGGATTACTGAAGTGGAAAAAGTG-A----CTAATTA--------T-TTTTGTAATTTAGAAAAATAAAAAC------TTTTTATCAAAAGCAATTGTCAGCTTAATTACAAAC----AATGG--AACCGTTTT-TACT-ACA--AAAAAAGATATATTAT-CT-GAAACAAA--GGCTTTTTATCAAAAATTGTATT---CT-----AATCAAGATTTCACTCCGGTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAAGCTTGGTGAACACTCT----AAACTTCTACTTGAAGGACCTATTACAAATGATGAAATGT--TAACAAGTCTT------AAAAATAT
gi|11 : AACAATCCATATGCTAGATAAGACATTCTATGGTTTATTAATTGAAAGTAATTTAATAGATTACTGGCGT-ATTCAACACTTAACAGAAATAAA---GTCCATATATGTTCAAAAAA------TCAAAAGAAAGAACGGCTTGGTTTCTTTTTAATTTCAACATGTTTAAGTATGTTTATTGTCACTGCAGATATTAAATCAATATATAGAAGTGATCAT-TCTCTCATTTGCT-------T-AACACTAGAATTTGAAAAATAGCGATTAATGGAAA--CATATTGGATATTCAACTATTAACTTTTAAAAGACATTAACTT--------TG-------TA----GAT-AAATAAGCATT--GCAATAAATC--GTGTATAACTACAATATGCTAAA--CAGACGT----T-TCATACTTACAACAATAATGTTCCAAATGAGACTT-TCCAATTTAATATA---AGTGCTCA---ATTTTGAGAA
gi|12 : gTCATGAAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAACGGAAGCAATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAAAATAAAGAAATCA--TAC----------------------AAAAC--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAA-------------A-T-GA-TATAAAACAGAAAAA--TAGAAGGGATAAGAATAAGAGCACGGGCAAAATGGGTTCATGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-TAAATAGGAAC------TATACATAAAAATCGA-TGTTA---CAACTTCAGACGTCTAATAGTCAA--ATTTT-AAAA-ACA--TAAGA-AAAATACT-TAAA-GAAACAAAAa
gi|12 : TTAAAA----AC----ATAAGAAAAATACTT-AAA-GAAACAAAATTT-CACATTTAAATATATCGAAAGTGAATGAAAC---TAAGAAAACAT-TACTTGAGGGTCCCATTACCGATGAGGAACTGT--TAGC---TTTTTTTA-AAAAAATATGtttcacatttaaatatatcgaaagtgaatgaaactaagaaaacattacttgagggtcccattaccgatgaggaactgttagctttttttaaaaaaatatgc
gi|13 : tcatgaagtaactatttctcattcctcttacatcaaacgacaacaagaccaaacggaagcaatactttataatgaaattgaaaatctaaaataaagaaatcatacaaaaccatactttaatagaataaaaaaaaaatgatataaaacagaaaaatagaagggataagaataagagcacgggcaaaatgggttcatgaaggataaaagaactctaaatatttttgcaatttagtaaataggaactatacataaaaatcgatgttacaacttcagacgtctaatagtcaaattTTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAA---TAA--------TA--ATTCGGAATTAAAAG-TTCATTCAGTGG----------AAACATTAAAA-G-AA-T-AAACTTGTCAACATTTATGGCCGAAATAAAGATGA-TCCTA-T-TTT--A-T----GATAACCTGAAGGATATTATTCTAGC--A--TCTG-ATACTTT-TAAAAT-CAT-TGCTGGAGGCTTCAATGTAGCCCAGGATCCTAATACATACTGTTTT-AATTATATTAATATAAATAACCCAAATAATTGAAAAAGTc
gi|14 : aaacctttgattttctcaaaagtaaacaatattcaattttacagatacggatataccttttataagtttcaagtggggaaatgatTGA----------AAA---CAAAATACAA-TTAA---TA--AATATTGATGGACCAA-TAAACATAA---CTAATATTTCGA-TTAGCAATTACCTAAAGC----TAT-CTCGG--AGGAGGG-ACATCTT-AAT-AT-TAT-TGTGGGAAATTTAAATATGACTTTGAATCCATATATAGAATGCTAT-TACTATATTTATGTAACTAATCCAAACGC
gi|15 : tagtaaagcatttttaaagttaacccagaggcgttgcattttttgtttcaaaataagatcgaatttaaactacacttaagatcatcagataatgctggaaataaattgatactatatatatattttattttttAATATAAATAACTTCAATGCTCGAAAAAGTCTTCAA-GATTTATTCATTGAATGTAATTT-------TG--AGCGAAGATTAACATTTAGAAGAAAAAAACATGGTGACATG-GT----AAAAAAACTCTCAAAAGACAGCAAG-------T-CTTTTTAATTTCAACATGTTTAATGATGGATATTAATACTGTGAATATAAACCCAGGATATAGAACTCACCAT-TCCCTAACTCGGT-------T-AATACTAGAATTT-GAAAAT-TTTGAAAAAGGAAAATCGTATTGGAAATTCAAC----------TA----------------------CA-------TA----GATAAAATAAAAAAaagatactatg
gi|16 : AAACATTTCAACGTTCATAGCTCAATTAAACACGA-TCCTG-T-TCTTAA-C----GATAGCATTAAGAATAGTATTCTAGC--A--ACTG-CGTGTTTGAACAATCCATATGCTAGAaa
gi|19 : ttcctagccgttctatagacgtagctattatatttaacaatattttttttttcatttagagtacattttatcttaacataaagtggtaaagaggtatataagataggatcaAAA-ACA--CAGGATAAAATATT-A-AA-GAAACGAAACGG--TTCTATGAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTTAAAATGAAACTT--TTT-CACATTTAAATACATCAAAATTGAATGAAAA---TGATAAAACA
gi|2 : ---TTA--------TATTA----GA--TACAACTCT------ATGG----------AA----TAAAA-A-AAGTTAAACTTATAAACATATATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGTTTATATTTTAGC--A--ACTT--TTATTT-AACCAT-TAT-TGCTGGAGACTTCAAT-TAGCCCTGGATCCTAATATAGACTGTTTT-GATTAC-------TAAATAAACTAAATGCTCGAAAA-GTCTTTAA-GATTTATGGATTAAATGTAATTTGACAGACTGTTGGCGC-GATCAACTTTTAAAAGAAAAAAA---GTTCACATG-GTTTAAAAAA---TCCTCAAAAGAAAGCAAGACTT---TACTTTTTAATTTTAACATATGTAATGATGAATATTGATACTACAGATATAAAACCAGGATGTAGAACTGACCAT-TCTCTTATTCGCTGAATAGCTGAATACTAGAATTTGGAAAAT-TTGAAAAAAG-AAAATCATATTAAAAATCCAAC-------TTTTAAAATA--------TACTAACTGCA-------TA----GATAAAATAAAGAAT--ACAATTCATC--GCGTAAA-TTACAATACGCTAAG--GAGACGT----T-TCATAATGATACAAATAATTTTGTAAATAAGGAGT-TACAATTTAATATA---AATGAACAGCTATTTTCAGAAGTGCTA--TTATT-TGAAATTTGTGGAGTAATTATTTCTCATTCCTCTTACATTAAACGACAACAAGATCAAAAGGAAGCATTG---------------AAT--T-----GAATACCTAGAA-AAAGAAATCA--TAT----------------------AAAAT--CATAACT-T-T--AT----AGAA---T--------------ATTTTTTTTT-A-TAGA-TAT-AGCGAGAAAAAATTAGAAGGGGTACGAATAATTTAACGAGCTAAATGGTTGCAAGAAGGAGAAAA---G-A-A------------------------CAATTTAG-AAAATAAGAAC------TATA-ATCAAAATCAA-TGTTA---CAACTTCAGGCATATAATAGTCAA--ATTTA-AAAATAAA--CAAGAT------------------CGTATCGG--CTCTTTAAAGAATTCTATTCACCTAGGTAAATTAAAA----AT----ATAA-------ACTT-GAATGATACTT--TTA-CATATTTAAATATATCAAAATTGAATGAAAA----AAGAAAACAT-TACTTGATGGTCCAATTACCTATGAGGAACTGC--TAGC----TTTTA---AAAAAATATGTCc
gi|20 : caaaatgggaataaacTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAGGCTTGATGAACA---CACTAAACTTC-TACTTGAAGGACCTATTACAAATGATGAAATAT--TAACA--AGTCTT---AAAAA
gi|21 : tccactccggCAAGATCAAAGGGAAGCAATG--------------AAAC--T-----GAACACCCAGAA-AAGGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-AA-TT----AGAAGTTT--TAAC-AAAAAGAA------TGA-A-T-
gi|3 : ATGGTCCAAATAAAGATAA-TCCTA-T-GTTCTA-T----GATAACCTGATGGAGAATATTCTAGC--A--ACTA-ATTCTTT-ACCCAT-CAT-TGCTGGAGACTTCATTATAGCCCTGGA-ACTAATGTAGA-TGTTTT-GACTACATTAATATAAATAACCCAAATGCTCGAAATAGTCTTTAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTAGCGC-GATCAACATTTAGAAG-AAAAAA---GTTCAAGTG-GTTTAAAAAAAA---CTCAAAAGAAAGCAATACTTGATTACTTTTTTATTTCAGCATGTTTAATGATGGATATTGACACTGTAGATA-AAAAAAAGGATATAGA------------TCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTG-AAAAAGGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGA--------CATTAACTACATACATGTTA----GATAAAATAAACTAT--ACAATTAATC--GCGTAAATTAACAATACGCTAAT--GTGACGT----T-TCATAATGACATAAATAATGTCCCAAATGAGGAGT-TACAGTTTAATATA---AGTGATTAACTATTTTTATAAATGCTT--TTCCCATAAAATTCGTGAAGTAACTATTGCTCATTCCTCTTACACCAAACGATATCAAGATGAAAGGG----------------A-AT-GAAAT--T-----GAATAACTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAA-ACT-TATATATACTAAGAA---T--AAAA-AAAATGAA-------TA-----GA-TATTAGAAAGAAAAAAATAGAAGGAATAAGAATGAGATTACGGAGAAAATGGGTACAAGAAGGAT-AAA---G-A-ACTCTAAATATATATTTTT-TTTTGCAATTTAG-AAAATAGTAAC------TGTACATCAAAATCAA-TGTTA---TAACT------------TGATCAA--ATTAA-AAAA-AAAATTAAAATGAAATACT-T-AAGGAAACGAAACGG--TTCTATAAATGATTATATTCACCTAGGAAAATTAAAG----AT----ATAA-------ACTT-AAATGGAACGT--TTT-CATCTCTTAATATTTCAAAATTGAATGAAAA---TATGAAAACAT-TACTTGAGGATCCCATTACATATGAAGAACTGCTATATT---TTTTTT---GAAAAAGATGTC
gi|4 : acCCAGGATATAGAACTGACCCT-TATTTGATCCGTT-------T-AATACTTGAATTTGGAAAAT-TTGAAAAA-GGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGA--------TATAAACTACA-------TT----GATAAAATAAAGAAT--ACAATAAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TAATAATGATATAAATAATGTTCCAAATGCGGAGT-TACAATTTGATATA---AGTGATCAACTATTTTAAGAAGTGTTT--TTATT-TTAAATTCGTGGAGTACCTATTTCTCATTCCTCTTACATCAAACGCCAACAAGACCAAAGGGAAGCTATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAGAA-AAAGAAATCT--TACTTTTTTTCTTTTTTCTTTCTTCAAAAC--CAT-ACT-T-TA-AA----AGAA---T--AAAA-AAAAGAAT------TTA-T-T-GA-TATAAGAGAGAAAAAATAAGAAGGGATAAGAATAAGATAACGGACATAATGGGTACAAGAAGGAGAAAA---G-A-ACTCTTAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAAGCATCTAATGGTTAA--ATTTT-TAAA-ACA--CAAGATGAAATACT-GAAA-GAAACAAAACGG--TTCTATAAAGAATTATATTCAATTAGGGAAATTAAAA----AC----ATAA-------ACTC-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAACGAAAT---TAAGAAAACAT-TACTCGAGGGTCCCATTACCTATGAGGAACTGC--TTGT---TTTTTTTTCGAAAATTATGT
gi|5 : TTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTATAGATATAAAACCAGGATATTGAACTGACCAC-TCTCTGATCCGTT-------T-AATACTTGAATTT-----------------GGAAAAT----TTGAAAA-----------A-----GGAAAA--------T--------CA-------TATT--GG-AAATTCAACAATTCACATTTAA--------AAGAT----ATAAACTATATTGAGACTT----T-TAATAATGATACGAATAATGTTCCAAATGCGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTTAGAAATGCTT--TTATT-TGAAATTCATGGAGTAACTATTTCTGATTCCTCTTACATCAAACGACAA---GACCAAAGGGAAGCAACACGTT--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCT--TAC----------------------AAAAC--AAT-ACT-T-TA-AT----TAAA---T--AAAA-AAAAAGAA------TTA-A-TTGA-TATAAGAGAGAAAAAATTAAAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---GTATACTCAAAAT---------------------TAG-AAAAAAGAAAC------TATACATCAAAATCAA-TATTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AAAGAAACAAAACGG--TTCTATAAAGAATTATATTCACCCAGGGAAATTAAAA----AC----ATAA-------ATTT-AAATGATACTT--TTTTCTAATTTAAATATATCAAAATTGAATAAAAT---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAAGATGTC
gi|6 : GATAGATATTGATACAGAAGATATAAAGTCAGGATATAAAACTGACCATGTCTTT------------------ATATCAGAATTTGGAA----CT----------ATATCATATTGGAAATGCAGCAATTCACTTT-------------------------G-------TA----AATAAAACAAACACT--ATAAT-AATTAAGCTTAAA-TTACACTATACTAA---GTGTCGTGTCCTGTCACAATGACATAAATATTGTTCTAAATGAGG--TCTACACTTTGATATATTAAGTGATCAATTATTTTCAGAAAT--TTCATTAAT-TGAAATACGAGGAGTTACT--TTCTCATTTCTCTTATGTTGAACAACACCATGATCAACGGGTTGCGATGC--T--ATACATTGAAGTACC-----GAAA--CAAAGA-ACAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-A--------------------AAAGAGAA------TGA-A-C-AAATATAAGTGAGAAAAAAT-AGAAGGAATAAGAA------CACGGACAAAGTGCATGCAAGAAGGAGAATG---G-A-ATTCTAAATA--------CAATTTGCAAATTAG-AAAGTAGGTAT------TTT--ATCTAAATCAA-TGCTA---CAGCTTCAGGCACTTCATAGTCAA--ACTTTAAAAA-ACG--CAAGGTGTAATAC
gi|6 : AAATTAAA-----------ATAG-------ACAT-AAATTATGC-T--TTT-CATATTTAAGTATACTACAGATGAATAAGTA---TAATAAaataaaattaaaatagacataaattatgcttttcatatttaagtatactacagatgaataagtataataacataataacgcacggtgaactactggct
gi|7 : gatagatattgatacagaagatataaagtcaggatataaaactgaccatgtctttatatcagaatttggaactatatcatattggaaatgcagcaattcactttgtaaataaaacaaacactataataattaagcttaaattacactatactaagtgtcgtgtcctgtcacaatgacataaatattgttctaaatgaggtctacactttgatatattaagtgatcaattattttcagaaatttcattaattgaaatacgaggagttactttctcatttctcttatgttgaacaacaccatgatcaacgggttgcgatgctatacattgaagtaccgaaacaaagaacagaaatcatacaaaatcatattttaaaaagagaatgaacaaatataagtgagaaaaaatagaaggaataagaacacggacaaagtgcatgcaagaaggagaatggaattctaaatacaatttgcaaattagaaagtaggtattttatctaaatcaatgctacagcttcaggcacttcatagtcaaactttaaaaaacgcaaggtgtaatacaataTTTTTA---GCATTTTTTCTAGCTGGCCTAGAGGTGTAGCTATGCTTTTCAATACTTATTGGAATTTA--A----AA--TAAATT-CC------GTGGAAACAGACCAAAA---TAAAA-C-AA-TTAAACTTATCAACAACTATGGCCCAAATACAGATGA-ACC-------TCTATT----GCTTACTTGAAGGATAAAATTAAAGT--A--ACTGCGTTTTAT-AA-CAT-CAT-TACTGAACACTCCAATGTAGCCCTGGATCCTAATATAGATTGTTTT-GATTACATTAATAGAACTATCCC---TGCTCGAAAAAGTATTCAT-GAGTTATTGATTAAATGTAATTTGAAAAACTGT--------A--AACTTTTACAAGAAAAAAA---cataataacgcacggtgaactactggct
gi|7 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaataAACATGTATGATGAAGGATATTAATACTGTAGATATAAAACCAGGATATATAACTAGCAAT-TCAGTTATTCGCT-------T-AATACTTGAATTTcatgtatgatgaaggatattaatactgtagatataaaaccaggatatataactagcaattcagttattcgcttaatacttgaattttt
gi|8 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaaataaaacaattaaacttatcaacaactatggcccaaatacagatgaacctctattgcttacttgaaggataaaattaaagtaactgcgttttataacatcattactgaacactccaatgtagccctggatcctaatatagattgttttgattacattaatagaactatccctgctcgaaaaagtattcatgagttattgattaaatgtaatttgaaaaactgtaaacttttacaagaaaaaTA--------TT--G----GA--AACAAC--T------ATAGC---------AAA---TAAAA-A-AA-T-ACTCTCATTAAAAGTTATGGTCCTAATAAAGATGAGCCCTA-C-TTCGT--T----AATCAAATTAAAAATAATATTTTAGCTTA--A--G-ATACTTT-TTGTAT-TAT-AGCAGGAAATTTCAACCTGGTTTTGAACCCAGATATAGATTGCTAT-GAATATATACATTTAAATAATCCAAATGCTCGAAATACTGTATAA-GAATTAATGGTGGAATGAAATTTAAtt
gi|9 : gtccatgaatgtacaggatcttgctgataaaacagatacatttaattttcttaaagaaaaaaaatctctatctattttttacaagacatgcattttacagataaagaaattaataacatacgcattctgtggggctatgaatgttattttagtaattttacaagccagtctagaggagttgccattattttaaataataattttaaatttaatattcactccgaagaaacggatcaaaatggaaacaaactcaTAAATCCAAGATATAGAAGCGATTAT-TCCCTTTTTAGCT-------T-AATTCTAGAATTT------------AAAAAGTA---TCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CAGC-----TACAAAGATAAGATAAAGAAT--ACAATAAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATCATGATAGTTATAATGTTCCAA-TGAGGCTT-TACATTTTAATATA---ACGGATCAACTTTTTTCAAAAGTGCTA--TTATT-TGAAATTCGAGGAGTAACTATTTCTCATTACTC---CGTTA--CGATAACAAGACCAAAGGGAAGCAATG--------------AAAT--T-----GAATACGTAGAA-AAA-----------------------------------AAAT--CAT-TCT-T-TA-AT----AGAA---C--AAGA-ATA--GAA------T--------------AGATAGAAAAAAC----AGGTATAGGAATAAGATCACGGGCAAATTGGGTGCAAGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAA-AAAAAAGGAACTACTCGTATACATCAAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCATCTAAATATATATCGGGATTCAACTTCTGTAAACATGGCTGATTTGCTCTCTCATCTAAATATACATGTACCTTAGAATGGTGAACAATCTTAACTTTAACTTGATGGACTATTACAAAGGATGAA
Unaligned ( gi|18 ): AAACGATCAAGATAAAATTATTAAGGAAACAGTAAAATTCTATAAAAAAAAATGAAACTGTAGAAGTAGATTTAAATAATATATTTTCTGATATTAATGTCCCTAAGCTAAATAATGACTTGAAAAAATCACTTGAAGGTC
Unaligned ( gi|22 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCGTCTAAATATAC
Unaligned ( gi|23 ): TATAACATATGAAGAAATATTGGGCTGTCTGAAGAATATGTCAAAT
Alignments
lowQualScore : 222 3333 333 111 55555555555555555555555555555555555555555555555555555555 111 1111 111 22222 1111111 11111 11111 88888888888888888888888888888888 1111 4444444444444 11111 3333333333333333333333 22222222222222 1111111111 111111 111111 1111111111 1111111 11 1111 111
lowQualScore : 333 7 44 1111 7 444 777 99999999999999999999999999999999999999999999999999999999 000 6 7 1 3 0 0 77 555 11 5 0000 0 0 66 66 77 11 5 99 5 5 5 0 5 5 1 0 0 5 1 1 77 77 111 8 0 88888 3 999 3 4 4 3333333 4 9 1 33333 4 1 11111 1 0 0 00000000000000000000000000000000 1 66 5 0 66 6 0 999 0000 5 1 3 5 888 2 77 5 3333333333333 55 00000 1 1 4 55 5555555555555555555555 55 8 4 4 4 8888 8888888 4 1 77777777777777 4 2 0 55 777 4 4 0 8888888888 4 222222 1 5 888 0 777 66 5 4 66 55 999999 0 77 1 2222222222 3333333 4 2 0 66 4 777 5 0 66 4444 555
lowQualScore : ... . .. .... . ... ... ........................................................ ... . . . . . . .. ... .. . .... . . .. .. .. .. . .. . . . . . . . . . . . . .. .. ... . . ..... . ... . . . ....... . . . ..... . . ..... . . . ................................ . .. . . .. . . ... .... . . . . ... . .. . ............. .. ..... . . . .. ...................... .. . . . . .... ....... . . .............. . . . .. ... . . . .......... . ...... . . ... . ... .. . . .. .. ...... . .. . .......... ....... . . . .. . ... . . .. .... ...
lowQualScore : 333 3 33 3333 3 333 555 77777777777777777777777777777777777777777777777777777777 888 7 3 7 0 6 4 22 999 66 0 6666 5 4 99 99 00 00 0 00 0 0 3 1 3 7 0 2 7 7 7 0 33 77 777 0 8 44444 8 777 5 0 8 0000000 0 4 8 11111 7 1 33333 1 8 1 77777777777777777777777777777777 0 99 9 9 99 5 4 111 6666 0 0 1 0 888 2 99 7 4444444444444 55 00000 2 4 0 55 5555555555555555555555 55 0 0 0 0 5555 3333333 0 6 00000000000000 4 0 1 99 888 4 4 1 6666666666 4 888888 9 0 888 4 666 99 0 4 11 77 555555 4 99 7 4444444444 0000000 0 3 9 55 0 000 0 5 99 1111 666
consensus : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CA-------TA----GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA------TTA-A-T-GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
Reference ( family-4311 ) : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CA-------TA----GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA------TTA-A-T-GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
gi|1 : TTTTTTTTAAACGCATATCTTA-----AAT-----GACG-AGTAAT--ATTTCAA---TTA--------TA--A----GA--TACAACATT------ATGT----------AA----TGAAA-A-AA-TTAAACTTATAAACATATATGGCCCAAATGAAGACGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGAGAATATTCTAGC--A--ACTA-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCAGGATCCTAATATAGACTGTTTTTGAATACATTAATATAAATAGTTCAAATGCTCGAAAAAGACTTCAA-GATTAATTGATTGAATGTGATTTGACAGATTGCTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAGAAAAAAACTCTCAAAAGAAAGCAAGATTTGGCTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTGTTGATATAAAACCAGGATATAAATCTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTTGAAAAT-TTGAAAAAAGGAAAATCAGATTGGAAATTCAACAATTCACTTTTAAAAGA-----------------CA-------TT----GATAAAATAAATAAT--ACAATTAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----A-TAATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAA-TTAATATA---AGTCATCAACTATTCTTAGAAGTACTT--TTATT-TGAAATTCGTAGAGTAACTAGTTCTCATTCCTCTTACATCAAACGACAACAAGATCAAAGGGAAGCAATACTAT--ATA-AT-GAAAT--T-----TCAAATCAAGAT-AAAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-AT----AGAA---TCCAAAATAAAAATAA------TTA-ATT-GA-TATAAGTGAGAAAAAATTAGACGTGATAAGAATAAGATCACGGTCCAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------CATATATCAAAATCAA-TGTAA---CAACTTCAGGCATCTAATGGTCAA--ATTTT-AAAA-ACG--CAAGA-AAAATACT-T-AA-GAAACAAAACGA--ATCTATAAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTT-AAATGATACTT--TTT-CAAATTTAAATATATTAAAATTGAATGAAAA---AAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAAC---TTTTTT---AAAAAATATGTC
gi|10 : ATGCAAT--ATA-ATTAAAAT--TATGCAGAAAAT-TAGAA-AAAGAA--CAACTAC----------------------AAGATAACATTACTAT-TG-AT----TC-----T--AAAA-GAAAAGAA------CTATA-T-GA-TATAAGACAAAAGAAAATGGAAAGGAAAAAGATAAGATCAAAAATTAAATGGATTACTGAAGTGGAAAAAGTG-A----CTAATTA--------T-TTTTGTAATTTAGAAAAATAAAAAC------TTTTTATCAAAAGCAATTGTCAGCTTAATTACAAAC----AATGG--AACCGTTTT-TACT-ACA--AAAAAAGATATATTAT-CT-GAAACAAA--GGCTTTTTATCAAAAATTGTATT---CT-----AATCAAGATTTCACTCCGGTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAAGCTTGGTGAACACTCT----AAACTTCTACTTGAAGGACCTATTACAAATGATGAAATGT--TAACAAGTCTT------AAAAATAT
gi|11 : AACAATCCATATGCTAGATAAGACATTCTATGGTTTATTAATTGAAAGTAATTTAATAGATTACTGGCGT-ATTCAACACTTAACAGAAATAAA---GTCCATATATGTTCAAAAAA------TCAAAAGAAAGAACGGCTTGGTTTCTTTTTAATTTCAACATGTTTAAGTATGTTTATTGTCACTGCAGATATTAAATCAATATATAGAAGTGATCAT-TCTCTCATTTGCT-------T-AACACTAGAATTTGAAAAATAGCGATTAATGGAAA--CATATTGGATATTCAACTATTAACTTTTAAAAGACATTAACTT--------TG-------TA----GAT-AAATAAGCATT--GCAATAAATC--GTGTATAACTACAATATGCTAAA--CAGACGT----T-TCATACTTACAACAATAATGTTCCAAATGAGACTT-TCCAATTTAATATA---AGTGCTCA---ATTTTGAGAA
gi|12 : gTCATGAAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAACGGAAGCAATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAAAATAAAGAAATCA--TAC----------------------AAAAC--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAA-------------A-T-GA-TATAAAACAGAAAAA--TAGAAGGGATAAGAATAAGAGCACGGGCAAAATGGGTTCATGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-TAAATAGGAAC------TATACATAAAAATCGA-TGTTA---CAACTTCAGACGTCTAATAGTCAA--ATTTT-AAAA-ACA--TAAGA-AAAATACT-TAAA-GAAACAAAAa
gi|12 : TTAAAA----AC----ATAAGAAAAATACTT-AAA-GAAACAAAATTT-CACATTTAAATATATCGAAAGTGAATGAAAC---TAAGAAAACAT-TACTTGAGGGTCCCATTACCGATGAGGAACTGT--TAGC---TTTTTTTA-AAAAAATATGtttcacatttaaatatatcgaaagtgaatgaaactaagaaaacattacttgagggtcccattaccgatgaggaactgttagctttttttaaaaaaatatgc
gi|13 : tcatgaagtaactatttctcattcctcttacatcaaacgacaacaagaccaaacggaagcaatactttataatgaaattgaaaatctaaaataaagaaatcatacaaaaccatactttaatagaataaaaaaaaaatgatataaaacagaaaaatagaagggataagaataagagcacgggcaaaatgggttcatgaaggataaaagaactctaaatatttttgcaatttagtaaataggaactatacataaaaatcgatgttacaacttcagacgtctaatagtcaaattTTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAA---TAA--------TA--ATTCGGAATTAAAAG-TTCATTCAGTGG----------AAACATTAAAA-G-AA-T-AAACTTGTCAACATTTATGGCCGAAATAAAGATGA-TCCTA-T-TTT--A-T----GATAACCTGAAGGATATTATTCTAGC--A--TCTG-ATACTTT-TAAAAT-CAT-TGCTGGAGGCTTCAATGTAGCCCAGGATCCTAATACATACTGTTTT-AATTATATTAATATAAATAACCCAAATAATTGAAAAAGTc
gi|14 : aaacctttgattttctcaaaagtaaacaatattcaattttacagatacggatataccttttataagtttcaagtggggaaatgatTGA----------AAA---CAAAATACAA-TTAA---TA--AATATTGATGGACCAA-TAAACATAA---CTAATATTTCGA-TTAGCAATTACCTAAAGC----TAT-CTCGG--AGGAGGG-ACATCTT-AAT-AT-TAT-TGTGGGAAATTTAAATATGACTTTGAATCCATATATAGAATGCTAT-TACTATATTTATGTAACTAATCCAAACGC
gi|15 : tagtaaagcatttttaaagttaacccagaggcgttgcattttttgtttcaaaataagatcgaatttaaactacacttaagatcatcagataatgctggaaataaattgatactatatatatattttattttttAATATAAATAACTTCAATGCTCGAAAAAGTCTTCAA-GATTTATTCATTGAATGTAATTT-------TG--AGCGAAGATTAACATTTAGAAGAAAAAAACATGGTGACATG-GT----AAAAAAACTCTCAAAAGACAGCAAG-------T-CTTTTTAATTTCAACATGTTTAATGATGGATATTAATACTGTGAATATAAACCCAGGATATAGAACTCACCAT-TCCCTAACTCGGT-------T-AATACTAGAATTT-GAAAAT-TTTGAAAAAGGAAAATCGTATTGGAAATTCAAC----------TA----------------------CA-------TA----GATAAAATAAAAAAaagatactatg
gi|16 : AAACATTTCAACGTTCATAGCTCAATTAAACACGA-TCCTG-T-TCTTAA-C----GATAGCATTAAGAATAGTATTCTAGC--A--ACTG-CGTGTTTGAACAATCCATATGCTAGAaa
gi|19 : ttcctagccgttctatagacgtagctattatatttaacaatattttttttttcatttagagtacattttatcttaacataaagtggtaaagaggtatataagataggatcaAAA-ACA--CAGGATAAAATATT-A-AA-GAAACGAAACGG--TTCTATGAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTTAAAATGAAACTT--TTT-CACATTTAAATACATCAAAATTGAATGAAAA---TGATAAAACA
gi|2 : ---TTA--------TATTA----GA--TACAACTCT------ATGG----------AA----TAAAA-A-AAGTTAAACTTATAAACATATATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGTTTATATTTTAGC--A--ACTT--TTATTT-AACCAT-TAT-TGCTGGAGACTTCAAT-TAGCCCTGGATCCTAATATAGACTGTTTT-GATTAC-------TAAATAAACTAAATGCTCGAAAA-GTCTTTAA-GATTTATGGATTAAATGTAATTTGACAGACTGTTGGCGC-GATCAACTTTTAAAAGAAAAAAA---GTTCACATG-GTTTAAAAAA---TCCTCAAAAGAAAGCAAGACTT---TACTTTTTAATTTTAACATATGTAATGATGAATATTGATACTACAGATATAAAACCAGGATGTAGAACTGACCAT-TCTCTTATTCGCTGAATAGCTGAATACTAGAATTTGGAAAAT-TTGAAAAAAG-AAAATCATATTAAAAATCCAAC-------TTTTAAAATA--------TACTAACTGCA-------TA----GATAAAATAAAGAAT--ACAATTCATC--GCGTAAA-TTACAATACGCTAAG--GAGACGT----T-TCATAATGATACAAATAATTTTGTAAATAAGGAGT-TACAATTTAATATA---AATGAACAGCTATTTTCAGAAGTGCTA--TTATT-TGAAATTTGTGGAGTAATTATTTCTCATTCCTCTTACATTAAACGACAACAAGATCAAAAGGAAGCATTG---------------AAT--T-----GAATACCTAGAA-AAAGAAATCA--TAT----------------------AAAAT--CATAACT-T-T--AT----AGAA---T--------------ATTTTTTTTT-A-TAGA-TAT-AGCGAGAAAAAATTAGAAGGGGTACGAATAATTTAACGAGCTAAATGGTTGCAAGAAGGAGAAAA---G-A-A------------------------CAATTTAG-AAAATAAGAAC------TATA-ATCAAAATCAA-TGTTA---CAACTTCAGGCATATAATAGTCAA--ATTTA-AAAATAAA--CAAGAT------------------CGTATCGG--CTCTTTAAAGAATTCTATTCACCTAGGTAAATTAAAA----AT----ATAA-------ACTT-GAATGATACTT--TTA-CATATTTAAATATATCAAAATTGAATGAAAA----AAGAAAACAT-TACTTGATGGTCCAATTACCTATGAGGAACTGC--TAGC----TTTTA---AAAAAATATGTCc
gi|20 : caaaatgggaataaacTAA-------ACTT-GACTGAT--TTGCTCT-CTCATCTAAATATACCTAGGCTTGATGAACA---CACTAAACTTC-TACTTGAAGGACCTATTACAAATGATGAAATAT--TAACA--AGTCTT---AAAAA
gi|21 : tccactccggCAAGATCAAAGGGAAGCAATG--------------AAAC--T-----GAACACCCAGAA-AAGGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-AA-TT----AGAAGTTT--TAAC-AAAAAGAA------TGA-A-T-
gi|3 : ATGGTCCAAATAAAGATAA-TCCTA-T-GTTCTA-T----GATAACCTGATGGAGAATATTCTAGC--A--ACTA-ATTCTTT-ACCCAT-CAT-TGCTGGAGACTTCATTATAGCCCTGGA-ACTAATGTAGA-TGTTTT-GACTACATTAATATAAATAACCCAAATGCTCGAAATAGTCTTTAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTAGCGC-GATCAACATTTAGAAG-AAAAAA---GTTCAAGTG-GTTTAAAAAAAA---CTCAAAAGAAAGCAATACTTGATTACTTTTTTATTTCAGCATGTTTAATGATGGATATTGACACTGTAGATA-AAAAAAAGGATATAGA------------TCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTG-AAAAAGGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGA--------CATTAACTACATACATGTTA----GATAAAATAAACTAT--ACAATTAATC--GCGTAAATTAACAATACGCTAAT--GTGACGT----T-TCATAATGACATAAATAATGTCCCAAATGAGGAGT-TACAGTTTAATATA---AGTGATTAACTATTTTTATAAATGCTT--TTCCCATAAAATTCGTGAAGTAACTATTGCTCATTCCTCTTACACCAAACGATATCAAGATGAAAGGG----------------A-AT-GAAAT--T-----GAATAACTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAA-ACT-TATATATACTAAGAA---T--AAAA-AAAATGAA-------TA-----GA-TATTAGAAAGAAAAAAATAGAAGGAATAAGAATGAGATTACGGAGAAAATGGGTACAAGAAGGAT-AAA---G-A-ACTCTAAATATATATTTTT-TTTTGCAATTTAG-AAAATAGTAAC------TGTACATCAAAATCAA-TGTTA---TAACT------------TGATCAA--ATTAA-AAAA-AAAATTAAAATGAAATACT-T-AAGGAAACGAAACGG--TTCTATAAATGATTATATTCACCTAGGAAAATTAAAG----AT----ATAA-------ACTT-AAATGGAACGT--TTT-CATCTCTTAATATTTCAAAATTGAATGAAAA---TATGAAAACAT-TACTTGAGGATCCCATTACATATGAAGAACTGCTATATT---TTTTTT---GAAAAAGATGTC
gi|4 : acCCAGGATATAGAACTGACCCT-TATTTGATCCGTT-------T-AATACTTGAATTTGGAAAAT-TTGAAAAA-GGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGA--------TATAAACTACA-------TT----GATAAAATAAAGAAT--ACAATAAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TAATAATGATATAAATAATGTTCCAAATGCGGAGT-TACAATTTGATATA---AGTGATCAACTATTTTAAGAAGTGTTT--TTATT-TTAAATTCGTGGAGTACCTATTTCTCATTCCTCTTACATCAAACGCCAACAAGACCAAAGGGAAGCTATAC--TTTATA-AT-GAAAT--T-----GAAAATCTAGAA-AAAGAAATCT--TACTTTTTTTCTTTTTTCTTTCTTCAAAAC--CAT-ACT-T-TA-AA----AGAA---T--AAAA-AAAAGAAT------TTA-T-T-GA-TATAAGAGAGAAAAAATAAGAAGGGATAAGAATAAGATAACGGACATAATGGGTACAAGAAGGAGAAAA---G-A-ACTCTTAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAAGCATCTAATGGTTAA--ATTTT-TAAA-ACA--CAAGATGAAATACT-GAAA-GAAACAAAACGG--TTCTATAAAGAATTATATTCAATTAGGGAAATTAAAA----AC----ATAA-------ACTC-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAACGAAAT---TAAGAAAACAT-TACTCGAGGGTCCCATTACCTATGAGGAACTGC--TTGT---TTTTTTTTCGAAAATTATGT
gi|5 : TTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTATAGATATAAAACCAGGATATTGAACTGACCAC-TCTCTGATCCGTT-------T-AATACTTGAATTT-----------------GGAAAAT----TTGAAAA-----------A-----GGAAAA--------T--------CA-------TATT--GG-AAATTCAACAATTCACATTTAA--------AAGAT----ATAAACTATATTGAGACTT----T-TAATAATGATACGAATAATGTTCCAAATGCGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTTAGAAATGCTT--TTATT-TGAAATTCATGGAGTAACTATTTCTGATTCCTCTTACATCAAACGACAA---GACCAAAGGGAAGCAACACGTT--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCT--TAC----------------------AAAAC--AAT-ACT-T-TA-AT----TAAA---T--AAAA-AAAAAGAA------TTA-A-TTGA-TATAAGAGAGAAAAAATTAAAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---GTATACTCAAAAT---------------------TAG-AAAAAAGAAAC------TATACATCAAAATCAA-TATTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AAAGAAACAAAACGG--TTCTATAAAGAATTATATTCACCCAGGGAAATTAAAA----AC----ATAA-------ATTT-AAATGATACTT--TTTTCTAATTTAAATATATCAAAATTGAATAAAAT---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAAGATGTC
gi|6 : GATAGATATTGATACAGAAGATATAAAGTCAGGATATAAAACTGACCATGTCTTT------------------ATATCAGAATTTGGAA----CT----------ATATCATATTGGAAATGCAGCAATTCACTTT-------------------------G-------TA----AATAAAACAAACACT--ATAAT-AATTAAGCTTAAA-TTACACTATACTAA---GTGTCGTGTCCTGTCACAATGACATAAATATTGTTCTAAATGAGG--TCTACACTTTGATATATTAAGTGATCAATTATTTTCAGAAAT--TTCATTAAT-TGAAATACGAGGAGTTACT--TTCTCATTTCTCTTATGTTGAACAACACCATGATCAACGGGTTGCGATGC--T--ATACATTGAAGTACC-----GAAA--CAAAGA-ACAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-A--------------------AAAGAGAA------TGA-A-C-AAATATAAGTGAGAAAAAAT-AGAAGGAATAAGAA------CACGGACAAAGTGCATGCAAGAAGGAGAATG---G-A-ATTCTAAATA--------CAATTTGCAAATTAG-AAAGTAGGTAT------TTT--ATCTAAATCAA-TGCTA---CAGCTTCAGGCACTTCATAGTCAA--ACTTTAAAAA-ACG--CAAGGTGTAATAC
gi|6 : AAATTAAA-----------ATAG-------ACAT-AAATTATGC-T--TTT-CATATTTAAGTATACTACAGATGAATAAGTA---TAATAAaataaaattaaaatagacataaattatgcttttcatatttaagtatactacagatgaataagtataataacataataacgcacggtgaactactggct
gi|7 : gatagatattgatacagaagatataaagtcaggatataaaactgaccatgtctttatatcagaatttggaactatatcatattggaaatgcagcaattcactttgtaaataaaacaaacactataataattaagcttaaattacactatactaagtgtcgtgtcctgtcacaatgacataaatattgttctaaatgaggtctacactttgatatattaagtgatcaattattttcagaaatttcattaattgaaatacgaggagttactttctcatttctcttatgttgaacaacaccatgatcaacgggttgcgatgctatacattgaagtaccgaaacaaagaacagaaatcatacaaaatcatattttaaaaagagaatgaacaaatataagtgagaaaaaatagaaggaataagaacacggacaaagtgcatgcaagaaggagaatggaattctaaatacaatttgcaaattagaaagtaggtattttatctaaatcaatgctacagcttcaggcacttcatagtcaaactttaaaaaacgcaaggtgtaatacaataTTTTTA---GCATTTTTTCTAGCTGGCCTAGAGGTGTAGCTATGCTTTTCAATACTTATTGGAATTTA--A----AA--TAAATT-CC------GTGGAAACAGACCAAAA---TAAAA-C-AA-TTAAACTTATCAACAACTATGGCCCAAATACAGATGA-ACC-------TCTATT----GCTTACTTGAAGGATAAAATTAAAGT--A--ACTGCGTTTTAT-AA-CAT-CAT-TACTGAACACTCCAATGTAGCCCTGGATCCTAATATAGATTGTTTT-GATTACATTAATAGAACTATCCC---TGCTCGAAAAAGTATTCAT-GAGTTATTGATTAAATGTAATTTGAAAAACTGT--------A--AACTTTTACAAGAAAAAAA---cataataacgcacggtgaactactggct
gi|7 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaataAACATGTATGATGAAGGATATTAATACTGTAGATATAAAACCAGGATATATAACTAGCAAT-TCAGTTATTCGCT-------T-AATACTTGAATTTcatgtatgatgaaggatattaatactgtagatataaaaccaggatatataactagcaattcagttattcgcttaatacttgaattttt
gi|8 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaaataaaacaattaaacttatcaacaactatggcccaaatacagatgaacctctattgcttacttgaaggataaaattaaagtaactgcgttttataacatcattactgaacactccaatgtagccctggatcctaatatagattgttttgattacattaatagaactatccctgctcgaaaaagtattcatgagttattgattaaatgtaatttgaaaaactgtaaacttttacaagaaaaaTA--------TT--G----GA--AACAAC--T------ATAGC---------AAA---TAAAA-A-AA-T-ACTCTCATTAAAAGTTATGGTCCTAATAAAGATGAGCCCTA-C-TTCGT--T----AATCAAATTAAAAATAATATTTTAGCTTA--A--G-ATACTTT-TTGTAT-TAT-AGCAGGAAATTTCAACCTGGTTTTGAACCCAGATATAGATTGCTAT-GAATATATACATTTAAATAATCCAAATGCTCGAAATACTGTATAA-GAATTAATGGTGGAATGAAATTTAAtt
gi|9 : gtccatgaatgtacaggatcttgctgataaaacagatacatttaattttcttaaagaaaaaaaatctctatctattttttacaagacatgcattttacagataaagaaattaataacatacgcattctgtggggctatgaatgttattttagtaattttacaagccagtctagaggagttgccattattttaaataataattttaaatttaatattcactccgaagaaacggatcaaaatggaaacaaactcaTAAATCCAAGATATAGAAGCGATTAT-TCCCTTTTTAGCT-------T-AATTCTAGAATTT------------AAAAAGTA---TCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CAGC-----TACAAAGATAAGATAAAGAAT--ACAATAAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATCATGATAGTTATAATGTTCCAA-TGAGGCTT-TACATTTTAATATA---ACGGATCAACTTTTTTCAAAAGTGCTA--TTATT-TGAAATTCGAGGAGTAACTATTTCTCATTACTC---CGTTA--CGATAACAAGACCAAAGGGAAGCAATG--------------AAAT--T-----GAATACGTAGAA-AAA-----------------------------------AAAT--CAT-TCT-T-TA-AT----AGAA---C--AAGA-ATA--GAA------T--------------AGATAGAAAAAAC----AGGTATAGGAATAAGATCACGGGCAAATTGGGTGCAAGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAA-AAAAAAGGAACTACTCGTATACATCAAAA
blockSeqs : . T CA CTAT T TCG TAC TTGGAATTTAAAATAAATTCCGTGGAAACAGACCAAAA TAC G T A C GC ATA CG T TAGC TT GG CG AC G AA C A G C . T T A T CT AA CAT T AAACT G GGT T G C GAATAGC G G A AGCGA T G TATTA C CATTAACTACATACATGTTA C TC A AA A ATT GTCC G A C C TTA G CA A CAATATAATT AC ATGCA A T T AC TTTTTTTCTTTTTTCTTTCTTC AA T A A T ACTA GTTTT . G TTTTTTTTTATA A A AT AGT T T TATATTTTT A TACTCG T T GCT GTC CC A T AT AG ATCT CT T TTTCACTCCG GAAAAAT A A GC T CTC C TA AAGT TTC
blockSeqs : . T TG CTAG T GCT . TAATTCGGAATTAAAAGTTCATTCAGTGGAAACAT G . T A C T T TA . . . . A AT . CA . . A A . C . G C TT T . . TC A GAT A . A . . G A TTTG A G AATAC C CATTAACTTTGTA A . T . T A . . C A . . C . . CTTTATAAT . . A T . . . . A . . . . TA . G CTATAT . A TT . . . CA . . C . . ATA . . . . TA TAAA . C AC . . A AA . . . . AA TA
blockSeqs : . TATTAGATACAACTCTATGGAA A . T A A T T CT . . . . A TG . CC . . A C . T . G C TT C . . AA A . A . T . . G A TTGA A G AATAC C TACTAACTGCATA G . T . A G . . T A . . T . . CTTTATAAT . . T C . . . . . . . . . TA . G TTAATT . T AT . . . T . . C . . ATC . . . . TG TAAG . C AT . . A GC . . . . T .
blockSeqs : TTGGAAACAACTATAGCAAA C . . A C T T CT . . . . C TA . CC . . G T . C . G A T C . . . . . A . T . . G A TTGA A G AATTC C TATAAACTACATT C . A . A T . . T A . . A . . CGTTATAAT . . C C . . . . . . . . . TA . A TGAAT . A TA . . . T . . C . . GTC . . . . TG GAAA . A AT . . A . . . . . T .
blockSeqs : A . . T T T T CT . . . . A TC . GT . . C T . T . A . . . . . . G . . G A TTG A G AATTC C TCAGCTACAAA G . T . A A . . C A . . T . . CTATACATT . . T A . . . . . . . . . TA . G TTATT . A TT . . . T . . C . . ACT . . . . TG TAAA . C AT . . A . . . . . T .
blockSeqs : . . A C GT . . . . A TT . T . . . . . A . . . G . . . . CT . T . . TCATATT C . A . . A . . T C . . C . . AAT . . A T . . . . . . . . . TA . G TGAAC . A T . . . T . . C . . . . . . . TG AAA . . AC . . A . . . . . T .
blockSeqs : . . . . . . . . AC . C . . . T . . . . . . . . . CATA C . . . . . . . G . . . C . . . A C . . . . . . . . . CA . G AT . . T . . . . . . . . . . . . . . A . AC . . G . . . . . . .
blockSeqs : . T . . . . . . . . . GTA G . . . A C . . . . . . . . . T . . TA . . C . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . . . . . . T . . . . . .
blockSeqCons : ***** *** TATAACTACGTA******************** TA***** TTAT********** TG TAAA**
originalCons : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAAAAACTCTCAAAAGAAAGCAAGACTTGGTTACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGA--------T--------CA-------TA----GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA------TTA-A-T-GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACT-T-AA-GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
finalCons : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTTAAAAAA-----CTCAAAAGAAAGCAAGACTT---TACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGATATAACTACGTA--------------------GATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA-AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAATA-----AAA-AAAAAGAATTAT----------GA-TATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAA--ATTTT-AAAA-ACA--CAAGATGAAATACTTAAA--GAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATACTT--TTT-CACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCATCTAAATATATATCGGGATTCAACTTCTGTAAACATGGCTGATTTGCTCTCTCATCTAAATATACATGTACCTTAGAATGGTGAACAATCTTAACTTTAACTTGATGGACTATTACAAAGGATGAA
Unaligned ( gi|18 ): AAACGATCAAGATAAAATTATTAAGGAAACAGTAAAATTCTATAAAAAAAAATGAAACTGTAGAAGTAGATTTAAATAATATATTTTCTGATATTAATGTCCCTAAGCTAAATAATGACTTGAAAAAATCACTTGAAGGTC
Unaligned ( gi|22 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCGTCTAAATATAC
Unaligned ( gi|23 ): TATAACATATGAAGAAATATTGGGCTGTCTGAAGAATATGTCAAAT
Alignments
lowQualScore : 222 3333 333 111 55555555555555555555555555555555555555555555555555555555 111 1111 111 11 44444 3333333 1111111 11 44444444444444444444 1111 44444444444444 11111 3333333333333333333333 444444444444444 1111111111 111111 1111 1111 1111 1111111 11 1111 111
lowQualScore : 333 7 44 1111 7 444 777 99999999999999999999999999999999999999999999999999999999 000 6 7 1 3 0 0 77 555 11 5 0000 0 0 66 66 77 11 5 99 5 5 5 0 5 5 1 0 0 5 1 1 77 77 111 8 0 11 55555 3 0000000 3 4 4 3333333 4 44 4 00 4 1 3 777 1 1 44444444444444444444 1 1 66 5 0 66 6 0 999 0000 5 1 3 5 888 2 77 5 33333333333333 55 00000 1 1 4 55 5555555555555555555555 55 8 4 4 4 8888 777777 4 44 111111111111111 2 0 55 777 4 4 0 8888888888 4 222222 1 5 888 0 777 0000 5 66 4 66 44 0 0 5 0 77 1 0000 0000 4444444 4 1 4 88 8888 5 0 66 4444 555
lowQualScore : ... . .. .... . ... ... ........................................................ ... . . . . . . .. ... .. . .... . . .. .. .. .. . .. . . . . . . . . . . . . .. .. ... . . .. ..... . ....... . . . ....... . .. . .. . . . ... . . .................... . . .. . . .. . . ... .... . . . . ... . .. . .............. .. ..... . . . .. ...................... .. . . . . .... ...... . .. ............... . . .. ... . . . .......... . ...... . . ... . ... .... . .. . .. .. . . . . .. . .... .... ....... . . . .. .... . . .. .... ...
lowQualScore : 333 3 33 3333 3 333 555 77777777777777777777777777777777777777777777777777777777 888 7 3 7 0 6 4 22 999 66 0 6666 5 4 99 99 00 00 0 00 0 0 3 1 3 7 0 2 7 7 7 0 33 77 777 0 8 00 00000 8 0000000 5 0 8 0000000 0 00 4 00 7 1 7 777 8 1 00000000000000000000 0 0 99 9 9 99 5 4 111 6666 0 0 1 0 888 2 99 7 44444444444444 55 00000 2 4 0 55 5555555555555555555555 55 0 0 0 0 5555 444444 0 11 777777777777777 0 1 99 888 4 4 1 6666666666 4 888888 9 0 888 4 666 6666 0 11 4 11 66 1 1 0 4 99 7 6666 6666 4444444 4 9 4 33 8888 0 5 99 1111 666
consensus : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTT--AAAAAAAC---CTCAAAAGAAAGCAAGACT---T---TACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGACA-T-AA-CTACG-------TAGATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA--AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA-------TTA--T--GATATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAAA----TTTT-A--AAA-ACA--CAAGATGAAATACTTAAAGAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATAC-TT--TTTCACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
Reference ( family-4311 ) : TTTTTTTTA---GCATATTTTATAGCCGATCTA-AGGCGTAGCAAT-CNTTTCAA---TTA--------TA--A----GA--TACAAC-CT------ATGG----------AAA---TAAAA-A-AA-TTAAACTTATCAACATTTATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGATAATATTCTAGC--A--ACTG-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCTGGATCCTAATATAGACTGTTTT-GANTACATTAATATAAATAACCCAAATGCTCGAAAAAGTCTTCAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTT--AAAAAA-----CTCAAAAGAAAGCAAGACT---T---TACTTTTTAATTTCAACATGTTTAATGATGGATATTGATACTGTAGATATAAAACCAGGATATAGAACTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTGAAAAAAGGAAAATCATATTGGAAATTCAACAATTCACTTTTAAAAGATA-T-AA-CTACG-------TAGATAAAATAAANAAT--ACAATNAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTCAGAAGTGCTT--TTATT-TGAAATTCGTGGAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAAGGGAAGCAATGC--T--ATA--AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAAGAA-------TTA--T--GATATAAGAGAGAAAAAATTAGAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAGGCGTCTAATGGTCAAA----TTTT-A--AAA-ACA--CAAGATGAAATACTTAAAGAAACGAAACGG--TTCTATAAAGAATTATATTCACCTAGGGAAATTAAAA----AC----ATAA-------ACTT-AAATGATAC-TT--TTTCACATTTAAATATATCAAAATTGAATGAAAA---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAATATGTC
gi|1 : TTTTTTTTAAACGCATATCTTA-----AAT-----GACG-AGTAAT--ATTTCAA---TTA--------TA--A----GA--TACAACATT------ATGT----------AA----TGAAA-A-AA-TTAAACTTATAAACATATATGGCCCAAATGAAGACGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGAGAATATTCTAGC--A--ACTA-ATTCTTT-AACCAT-CAT-TGCTGGAGACTTCAATGTAGCCCAGGATCCTAATATAGACTGTTTTTGAATACATTAATATAAATAGTTCAAATGCTCGAAAAAGACTTCAA-GATTAATTGATTGAATGTGATTTGACAGATTGCTGGCGC-GATCAACATTTAGAAGAAAAAAA---GTTCACATG-GTTT--AGAAAAAAACTCTCAAAAGAAAGCAAGATT---TGGCTACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTGTTGATATAAAACCAGGATATAAATCTGACCAT-TCTCTTATTCGCT-------T-AATACTAGAATTTTGAAAAT-TTGAAAAAAGGAAAATCAGATTGGAAATTCAACAATTCACTTTTAAAAGACA-T----------------T-GATAAAATAAATAAT--ACAATTAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----A-TAATAATGATATAAATAATGTTCCAAATGAGGAGT-TACAATT-AATATA---AGTCATCAACTATTCTTAGAAGTACTT--TTATT-TGAAATTCGTAGAGTAACTAGTTCTCATTCCTCTTACATCAAACGACAACAAGATCAAAGGGAAGCAATAC--T--ATATAAT-GAAAT--T-----TCAAATCAAGAT-AAAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-AT----AGAA---TCCAAAATAAAAATAA-------TTAATT--GATATAAGTGAGAAAAAATTAGACGTGATAAGAATAAGATCACGGTCCAAATGGGTGCAAGAAGGAGAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------CATATATCAAAATCAA-TGTAA---CAACTTCAGGCATCTAATGGTCAAA----TTTT-A--AAA-ACG--CAAGA-AAAATACTTAA-GAAACAAAACGA--ATCTATAAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTT-AAATGATAC-TT--TTTCAAATTTAAATATATTAAAATTGAATGAAAA---AAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAAC---TTTTTT---AAAAAATATGTC
gi|10 : ATGCAAT--ATA--ATTAAAAT--TATGCAGAAAAT-TAGAA-AAAGAA--CAACTAC----------------------AAGATAACATTACTAT-TG-AT----TC-----T--AAAA-GAAAAGAA-------CTA--TATGATATAAGACAAAAGAAAATGGAAAGGAAAAAGATAAGATCAAAAATTAAATGGATTACTGAAGTGGAAAAAGTG-A----CTAATTA--------T-TTTTGTAATTTAGAAAAATAAAAAC------TTTTTATCAAAAGCAATTGTCAGCTTAATTACAAAC----AATGG---AACCGTTTTT-ACTACA-AAA--AAAGATATATTATCT---GAAACAAA--GGCTTTTTATCAAAAATTGTATT---CT-----AATCAAGATTTCACTCCGGTAA-------ACTT-GACTGAT---TTGCTCTCTCATCTAAATATACCTAAGCTTGGTGAACACTCT----AAACTTCTACTTGAAGGACCTATTACAAATGATGAAATGT--TAACAAGTCTT------AAAAATAT
gi|11 : AACAATCCATATGCTAGATAAGACATTCTATGGTTTATTAATTGAAAGTAATTTAATAGATTACTGGCGT-ATTCAACACTTAACAGAAATAAA---GTCCATATATGTTC--AAAAAA------TCAAAAGAAAGAACGGCT---TGGTTTCTTTTTAATTTCAACATGTTTAAGTATGTTTATTGTCACTGCAGATATTAAATCAATATATAGAAGTGATCAT-TCTCTCATTTGCT-------T-AACACTAGAATTTGAAAAATAGCGATTAATGGAAA--CATATTGGATATTCAACTATTAACTTTTAAAAGACA-TTAA-CTTTG-------TAGATAAA-TAAGCATT--GCAATAAATC--GTGTATAACTACAATATGCTAAA--CAGACGT----T-TCATACTTACAACAATAATGTTCCAAATGAGACTT-TCCAATTTAATATA---AGTGCTCA---ATTTTGAGAA
gi|12 : gTCATGAAGTAACTATTTCTCATTCCTCTTACATCAAACGACAACAAGACCAAACGGAAGCAATAC--TTTATA--AT-GAAAT--T-----GAAAATCTAAAATAAAGAAATCA--TAC----------------------AAAAC--CAT-ACT-T-TA-AT----AGAA---T--AAAA-AAAAA------------A--T--GATATAAAACAGAAAAA--TAGAAGGGATAAGAATAAGAGCACGGGCAAAATGGGTTCATGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAG-TAAATAGGAAC------TATACATAAAAATCGA-TGTTA---CAACTTCAGACGTCTAATAGTCAAA----TTTT-A--AAA-ACA--TAAGA-AAAATACTTAAAGAAACAAAAa
gi|12 : TTAAAA----AC----ATAAGAAAAATACTT-AAA-GAAAC-AAAATTTCACATTTAAATATATCGAAAGTGAATGAAAC---TAAGAAAACAT-TACTTGAGGGTCCCATTACCGATGAGGAACTGT--TAGC---TTTTTTTA-AAAAAATATGtttcacatttaaatatatcgaaagtgaatgaaactaagaaaacattacttgagggtcccattaccgatgaggaactgttagctttttttaaaaaaatatgc
gi|13 : tcatgaagtaactatttctcattcctcttacatcaaacgacaacaagaccaaacggaagcaatactttataatgaaattgaaaatctaaaataaagaaatcatacaaaaccatactttaatagaataaaaaaaaaatgatataaaacagaaaaatagaagggataagaataagagcacgggcaaaatgggttcatgaaggataaaagaactctaaatatttttgcaatttagtaaataggaactatacataaaaatcgatgttacaacttcagacgtctaatagtcaaattTTTTTTTTA---GCAAATTTTATAGCCAATCTATAGGCGTAGCAATTCGTTTTAA---TAA--------TA--ATTCGGAATTAAAAG-TTCATTCAGTGG----------AAACATTAAAA-G-AA-T-AAACTTGTCAACATTTATGGCCGAAATAAAGATGA-TCCTA-T-TTT--A-T----GATAACCTGAAGGATATTATTCTAGC--A--TCTG-ATACTTT-TAAAAT-CAT-TGCTGGAGGCTTCAATGTAGCCCAGGATCCTAATACATACTGTTTT-AATTATATTAATATAAATAACCCAAATAATTGAAAAAGTc
gi|14 : aaacctttgattttctcaaaagtaaacaatattcaattttacagatacggatataccttttataagtttcaagtggggaaatgatTGA----------AAA---CAAAATACAA-TTAA---TA--AATATTGATGGACCAA-TAAACATAA---CTAATATTTCGA-TTAGCAATTACCTAAAGC----TAT-CTCGG--AGGAGGG-ACATCTT-AAT-AT-TAT-TGTGGGAAATTTAAATATGACTTTGAATCCATATATAGAATGCTAT-TACTATATTTATGTAACTAATCCAAACGC
gi|15 : tagtaaagcatttttaaagttaacccagaggcgttgcattttttgtttcaaaataagatcgaatttaaactacacttaagatcatcagataatgctggaaataaattgatactatatatatattttattttttAATATAAATAACTTCAATGCTCGAAAAAGTCTTCAA-GATTTATTCATTGAATGTAATTT-------TG--AGCGAAGATTAACATTTAGAAGAAAAAAACATGGTGACATG-GT----AAAAAAACT--CTCAAAAGACAGCAAG----------T-CTTTTTAATTTCAACATGTTTAATGATGGATATTAATACTGTGAATATAAACCCAGGATATAGAACTCACCAT-TCCCTAACTCGGT-------T-AATACTAGAATTT-GAAAAT-TTTGAAAAAGGAAAATCGTATTGGAAATTC-------------------------AA-CTACA-------TAGATAAAATAAAAAAaagatactatg
gi|16 : AAACATTTCAACGTTCATAGCTCAATTAAACACGA-TCCTG-T-TCTTAA-C----GATAGCATTAAGAATAGTATTCTAGC--A--ACTG-CGTGTTTGAACAATCCATATGCTAGAaa
gi|19 : ttcctagccgttctatagacgtagctattatatttaacaatattttttttttcatttagagtacattttatcttaacataaagtggtaaagaggtatataagataggatca--AAA-ACA--CAGGATAAAATA-TTAAAGAAACGAAACGG--TTCTATGAAGAATTATATTCATCTAGGGAAATTAAAA----AT----ATAA-------ACTTAAAATGAAAC-TT--TTTCACATTTAAATACATCAAAATTGAATGAAAA---TGATAAAACA
gi|2 : ---TTA--------TATTA----GA--TACAACTCT------ATGG----------AA----TAAAA-A-AAGTTAAACTTATAAACATATATGGCCCAAATAAAGATGA-TCCTA-T-TTTCTA-T----GATAACCTGAAGGTTTATATTTTAGC--A--ACTT--TTATTT-AACCAT-TAT-TGCTGGAGACTTCAAT-TAGCCCTGGATCCTAATATAGACTGTTTT-GATTAC-------TAAATAAACTAAATGCTCGAAAA-GTCTTTAA-GATTTATGGATTAAATGTAATTTGACAGACTGTTGGCGC-GATCAACTTTTAAAAGAAAAAAA---GTTCACATG-GTTT--AAAAAATC---CTCAAAAGAAAGCAAGACT---T---TACTTTTTAATTTTAACATATGTAATGATGAATATTGATACTACAGATATAAAACCAGGATGTAGAACTGACCAT-TCTCTTATTCGCTGAATAGCTGAATACTAGAATTTGGAAAAT-TTGAAAAAAG-AAAATCATATTAAAAATCCAAC-------TTTTAAAATATACT-AA-CTGCA-------TAGATAAAATAAAGAAT--ACAATTCATC--GCGTAAA-TTACAATACGCTAAG--GAGACGT----T-TCATAATGATACAAATAATTTTGTAAATAAGGAGT-TACAATTTAATATA---AATGAACAGCTATTTTCAGAAGTGCTA--TTATT-TGAAATTTGTGGAGTAATTATTTCTCATTCCTCTTACATTAAACGACAACAAGATCAAAAGGAAGCATTG----------------AAT--T-----GAATACCTAGAA-AAAGAAATCA--TAT----------------------AAAAT--CATAACT-T-T--AT----AGAA---T--------------ATTTTTTTTTA--TA-GATAT-AGCGAGAAAAAATTAGAAGGGGTACGAATAATTTAACGAGCTAAATGGTTGCAAGAAGGAGAAAA---G-A-A------------------------CAATTTAG-AAAATAAGAAC------TATA-ATCAAAATCAA-TGTTA---CAACTTCAGGCATATAATAGTCAAA----TTTA-A--AAATAAA--CAAGAT----------------CGTATCGG--CTCTTTAAAGAATTCTATTCACCTAGGTAAATTAAAA----AT----ATAA-------ACTT-GAATGATAC-TT--TTACATATTTAAATATATCAAAATTGAATGAAAA----AAGAAAACAT-TACTTGATGGTCCAATTACCTATGAGGAACTGC--TAGC----TTTTA---AAAAAATATGTCc
gi|20 : caaaatgggaataaacTAA-------ACTT-GACTGAT---TTGCTCTCTCATCTAAATATACCTAGGCTTGATGAACA---CACTAAACTTC-TACTTGAAGGACCTATTACAAATGATGAAATAT--TAACA--AGTCTT---AAAAA
gi|21 : tccactccggCAAGATCAAAGGGAAGCAATG---------------AAAC--T-----GAACACCCAGAA-AAGGAAATCA--TAC----------------------AAAAT--CAT-ACT-T-AA-TT----AGAAGTTT--TAAC-AAAAAGAA-------T
gi|3 : ATGGTCCAAATAAAGATAA-TCCTA-T-GTTCTA-T----GATAACCTGATGGAGAATATTCTAGC--A--ACTA-ATTCTTT-ACCCAT-CAT-TGCTGGAGACTTCATTATAGCCCTGGA-ACTAATGTAGA-TGTTTT-GACTACATTAATATAAATAACCCAAATGCTCGAAATAGTCTTTAA-GATTTATTGATTGAATGTAATTTGACAGACTGTTAGCGC-GATCAACATTTAGAAG-AAAAAA---GTTCAAGTG-GTTTAAAAAAAA-----CTCAAAAGAAAGCAATACTTGAT---TACTTTTTTATTTCAGCATGTTTAATGATGGATATTGACACTGTAGATA-AAAAAAAGGATATAGA------------TCTTATTCGCT-------T-AATACTAGAATTTGGAAAAT-TTG-AAAAAGGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGACATT-AA-CTACATACATGTTAGATAAAATAAACTAT--ACAATTAATC--GCGTAAATTAACAATACGCTAAT--GTGACGT----T-TCATAATGACATAAATAATGTCCCAAATGAGGAGT-TACAGTTTAATATA---AGTGATTAACTATTTTTATAAATGCTT--TTCCCATAAAATTCGTGAAGTAACTATTGCTCATTCCTCTTACACCAAACGATATCAAGATGAAAGGG----------------A--AT-GAAAT--T-----GAATAACTAGAA-AAAGAAATCA--TAC----------------------AAAAT--CAA-ACT-TATATATACTAAGAA---T--AAAA-AAAATGAA--------TA-----GATATTAGAAAGAAAAAAATAGAAGGAATAAGAATGAGATTACGGAGAAAATGGGTACAAGAAGGAT-AAA---G-A-ACTCTAAATATATATTTTT-TTTTGCAATTTAG-AAAATAGTAAC------TGTACATCAAAATCAA-TGTTA---TAACT------------TGATCAAA----TTAA-A--AAA-AAAATTAAAATGAAATACTTAAGGAAACGAAACGG--TTCTATAAATGATTATATTCACCTAGGAAAATTAAAG----AT----ATAA-------ACTT-AAATGGAAC-GT--TTTCATCTCTTAATATTTCAAAATTGAATGAAAA---TATGAAAACAT-TACTTGAGGATCCCATTACATATGAAGAACTGCTATATT---TTTTTT---GAAAAAGATGTCgaat
gi|4 : acCCAGGATATAGAACTGACCCT-TATTTGATCCGTT-------T-AATACTTGAATTTGGAAAAT-TTGAAAAA-GGAAAATCATATTGGAAATTCAACAATACACTTTTAAAAGATA-T-AAACTACA-------TTGATAAAATAAAGAAT--ACAATAAACC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TAATAATGATATAAATAATGTTCCAAATGCGGAGT-TACAATTTGATATA---AGTGATCAACTATTTTAAGAAGTGTTT--TTATT-TTAAATTCGTGGAGTACCTATTTCTCATTCCTCTTACATCAAACGCCAACAAGACCAAAGGGAAGCTATAC--TTTATA--AT-GAAAT--T-----GAAAATCTAGAA-AAAGAAATCT--TACTTTTTTTCTTTTTTCTTTCTTCAAAAC--CAT-ACT-T-TA-AA----AGAA---T--AAAA-AAAAGAAT-------TTA--TT-GATATAAGAGAGAAAAAATAAGAAGGGATAAGAATAAGATAACGGACATAATGGGTACAAGAAGGAGAAAA---G-A-ACTCTTAATA--------T-TTTTGCAATTTAG-AAAATAGGAAC------TATACATCAAAATCAA-TGTTA---CAACTTCAAGCATCTAATGGTTAAA----TTTT-T--AAA-ACA--CAAGATGAAATACTGAAAGAAACAAAACGG--TTCTATAAAGAATTATATTCAATTAGGGAAATTAAAA----AC----ATAA-------ACTC-AAATGATAC-TT--TTTCACATTTAAATATATCAAAATTGAACGAAAT---TAAGAAAACAT-TACTCGAGGGTCCCATTACCTATGAGGAACTGC--TTGT---TTTTTTTTCGAAAATTATGT
gi|5 : ---T---TACTTTTTAATCTCAACATGTTTAATGATGGATATTGATACTATAGATATAAAACCAGGATATTGAACTGACCAC-TCTCTGATCCGTT-------T-AAT------ACTTG---AAT-TTG-------GAAAAT----TTGAAA----AAGGA---------AAATCATA-T----------------TGGA--AATTCAACAATTCACATTTAA--------AAGAT----ATAAACTATATTGAGACTT----T-TAATAATGATACGAATAATGTTCCAAATGCGGAGT-TACAATTTAATATA---AGTGATCAACTATTTTTAGAAATGCTT--TTATT-TGAAATTCATGGAGTAACTATTTCTGATTCCTCTTACATCAAACGACAA---GACCAAAGGGAAGCAACACGTT--ATA--AT-GAAAT--T-----GAAAACCTAGAA-AAAGAAATCT--TAC----------------------AAAAC--AAT-ACT-T-TA-AT----TAAA---T--AAAA-AAAAAGAA-------TTAATT--GATATAAGAGAGAAAAAATTAAAAGGGATAAGAATAAGATCACGGGCAAAATGGGTGCAAGAAGGAGAAAA---GTATACTCAAAAT---------------------TAG-AAAAAAGAAAC------TATACATCAAAATCAA-TATTA---CAACTTCAGGCGTCTAATGGTCAAA----TTTT-A--AAA-ACA--CAAGATGAAATACTTAAAGAAACAAAACGG--TTCTATAAAGAATTATATTCACCCAGGGAAATTAAAA----AC----ATAA-------ATTT-AAATGATACTTT--TTTCTAATTTAAATATATCAAAATTGAATAAAAT---TAAGAAAACAT-TACTTGAGGGTCCCATTACCTATGAGGAACTGC--TAGC---TTTTTT---AAAAAAGATGTC
gi|6 : GATAGATATTGATACAGAAGATATAAAGTCAGGATATAAAACTGACCATGTCTTT------------------ATATCAGAATTTGGAA----CT----------ATATCATATTGGAAATGCAGCAATTCACTTT-------------------G-------TAAATAAAACAAACACT--ATAAT-AATTAAGCTTAAA-TTACACTATACTAA---GTGTCGTGTCCTGTCACAATGACATAAATATTGTTCTAAATGAGG--TCTACACTTTGATATATTAAGTGATCAATTATTTTCAGAAAT--TTCATTAAT-TGAAATACGAGGAGTTACT--TTCTCATTTCTCTTATGTTGAACAACACCATGATCAACGGGTTGCGATGC--T--ATAC-ATTGAAGTACC-----GAAA--CAAAGA-ACAGAAATCA--TAC----------------------AAAAT--CAT-ATT-T-TA-A---------------AAAG-AGAATGAA-------CAA------ATATAAGTGAGAAAAAAT-AGAAGGAATAAGAA------CACGGACAAAGTGCATGCAAGAAGGAGAATG---G-A-ATTCTAAATA--------CAATTTGCAAATTAG-AAAGTAGGTAT------TTT--ATCTAAATCAA-TGCTA---CAGCTTCAGGCACTTCATAGTCAAA----CTTTAA--AAA-ACG--CAAGGTGTAATAC
gi|7 : TTTTTA---GCATTTTTTCTAGCTGGCCTAGAGGTGTAGCTATGCTTTTCAATACTTATTGGAATTTA--A----AA--TAAATT-CC------GTGGAAACAGACCAAAA---TAAAA-C-AA-TTAAACTTATCAACAACTATGGCCCAAATACAGATGA-ACC-------TCTATT----GCTTACTTGAAGGATAAAATTAAAGT--A--ACTGCGTTTTAT-AA-CAT-CAT-TACTGAACACTCCAATGTAGCCCTGGATCCTAATATAGATTGTTTT-GATTACATTAATAGAACTATCCC---TGCTCGAAAAAGTATTCAT-GAGTTATTGATTAAATGTAATTTGAAAAACTGT--------A--AACTTTTACAAGAAAAAAA---aataaaattaaaatagacataaattatgcttttcatatttaagtatactacagatgaataagtataataacataataacgcacggtgaactactggct
gi|7 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaataAACATGTATGATGAAGGATATTAATACTGTAGATATAAAACCAGGATATATAACTAGCAAT-TCAGTTATTCGCT-------T-AATACTTGAATTTcatgtatgatgaaggatattaatactgtagatataaaaccaggatatataactagcaattcagttattcgcttaatacttgaattttt
gi|8 : atctctaaatgtacagggtcttggagacagaaataagcgacaatgtacatttgactttgtctaaagtaaacattttttttttctgcaagatactcactttacagattcagatataacttgtgtacatactcagtagggttataaatatttttagcattttttctagctggcctagaggtgtagctatgcttttcaatacttattggaatttaaaataaattccgtggaaacagaccaaaataaaacaattaaacttatcaacaactatggcccaaatacagatgaacctctattgcttacttgaaggataaaattaaagtaactgcgttttataacatcattactgaacactccaatgtagccctggatcctaatatagattgttttgattacattaatagaactatccctgctcgaaaaagtattcatgagttattgattaaatgtaatttgaaaaactgtaaacttttacaagaaaaaTA--------TT--G----GA--AACAAC--T------ATAGC---------AAA---TAAAA-A-AA-T-ACTCTCATTAAAAGTTATGGTCCTAATAAAGATGAGCCCTA-C-TTCGT--T----AATCAAATTAAAAATAATATTTTAGCTTA--A--G-ATACTTT-TTGTAT-TAT-AGCAGGAAATTTCAACCTGGTTTTGAACCCAGATATAGATTGCTAT-GAATATATACATTTAAATAATCCAAATGCTCGAAATACTGTATAA-GAATTAATGGTGGAATGAAATTTAAtt
gi|9 : gtccatgaatgtacaggatcttgctgataaaacagatacatttaattttcttaaagaaaaaaaatctctatctattttttacaagacatgcattttacagataaagaaattaataacatacgcattctgtggggctatgaatgttattttagtaattttacaagccagtctagaggagttgccattattttaaataataattttaaatttaatattcactccgaagaaacggatcaaaatggaaacaaactcaTAAATCCAAGATATAGAAGCGATTAT-TCCCTTTTTAGCT-------T-AATTCTAGAATTT------------AAAAAGTA---TCATATTGGAAATTCAACAATTCACTTTTAAAAGAT--C-AG-CTACA-------AAGATAAGATAAAGAAT--ACAATAAATC--GCGTAAAATTACAATACGCTAAA--GAGACGT----T-TCATCATGATAGTTATAATGTTCCAA-TGAGGCTT-TACATTTTAATATA---ACGGATCAACTTTTTTCAAAAGTGCTA--TTATT-TGAAATTCGAGGAGTAACTATTTCTCATTACTC---CGTTA--CGATAACAAGACCAAAGGGAAGCAATG---------------AAAT--T-----GAATACGTAGAA-AAA-----------------------------------AAAT--CAT-TCT-T-TA-AT----AGAA---C--AAGA-ATA--GAA-------T-------------AGATAGAAAAAAC----AGGTATAGGAATAAGATCACGGGCAAATTGGGTGCAAGAAGGATAAAA---G-A-ACTCTAAATA--------T-TTTTGCAATTTAA-AAAAAAGGAACTACTCGTATACATCAAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCATCTAAATATATATCGGGATTCAACTTCTGTAAACATGGCTGATTTGCTCTCTCATCTAAATATACATGTACCTTAGAATGGTGAACAATCTTAACTTTAACTTGATGGACTATTACAAAGGATGAA
Unaligned ( gi|18 ): AAACGATCAAGATAAAATTATTAAGGAAACAGTAAAATTCTATAAAAAAAAATGAAACTGTAGAAGTAGATTTAAATAATATATTTTCTGATATTAATGTCCCTAAGCTAAATAATGACTTGAAAAAATCACTTGAAGGTC
Unaligned ( gi|22 ): TCGGGATTTCCTTCTGTAAACATAGATGATTTGCTCTCTCGTCTAAATATAC
Unaligned ( gi|23 ): TATAACATATGAAGAAATATTGGGCTGTCTGAAGAATATGTCAAAT