lowQualScore : 1 1 222 22 1 1 88888888888888888888888888888888888 1 111 1111 1111111 222 111 1 1 11111111 2222222222222222 4444444444444444444 1 1 333333333333333333333
lowQualScore : 7 7 333 2 33 5 6 6 4 6 5 5 6 22222222222222222222222222222222222 8 8 8 7 5 4 6 222 66 0 5 0000 888 6666666 000 66 666 4 777 2 3 0 4 44444444 55 1 6666666666666666 5 4 4 2 8888 4 44 4 5555555555555555555 55 55 4 6 3 7777 888888888888888888888 666 777
lowQualScore : . . ... . .. . . . . . . . . ................................... . . . . . . . ... .. . . .... ... ....... ... .. ... . ... . . . . ........ .. . ................ . . . . .... . .. . ................... .. .. . . . .... ..................... ... ...
lowQualScore : 0 0 000 0 00 0 0 0 6 0 0 6 0 00000000000000000000000000000000000 0 0 0 0 0 4 7 111 99 5 0 6666 888 2222222 444 99 999 4 888 6 7 9 5 55555555 55 2 5555555555555555 5 0 0 5 5555 0 77 0 5555555555555555555 55 55 1 8 3 4444 555555555555555555555 444 000
consensus : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG-------TTA--TGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACG--------AACTGCG--CAAAT----------------TAAACA-GAA-AGCGTATCTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TT---ATA-----T--T----T--TT--AAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---TAGAAT---T---CA-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
Reference ( gi|1 ) : AAACAATGTTCTACTGTATATTAAACTAATCAATAAACAATCAAGTAACCTTTAGGGTACTCCTCCTATGTTTCTTAAATTATCTCCTCTTTGCCTGCTTGCCTGCTTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATGGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCTTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCACAAGTTATTTTTGAG-AAAATGCA--ATG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG-------TTT--TGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGAATACTTTTATAAAACTCTGACAATATCTTTTGAATAAATGTAATAGATATGCATACG--------AACTGCG--CAAAT----------------TGAATA-GAA-AGCGTATCTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TT-G-ATA-----T--T----T--TT--ATATCCAAAACACATAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AACAAT---T---CA-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|16 : CAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|15 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|14 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|4 : gaaacagtATAAAACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTTCC
gi|3 : TCCTCCTGCGTTTCTTAAATTCTCTCCTCTCTGCGTGCCTGCCTacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatggtaataaatagtcttatgttattttgtattaccattttccttatactaatccacctcgtgtcaggtttggtggaaaaaaagcaagctacagatctacattgctcaagttacttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacacttaacaggtgtcattgttcaaagaatgacagctagtattacgcatactattataaaactctgacactgtcttttgaacaaatgtaatagatagcgtttcttaatagtatatatttatgcagacgttaatgtagttttatatatggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttgaataacttttataacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatcccatt
gi|2 : TTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTATTGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGG-GGGAAA-AAGCAAGCTATAGATCTACATAGCTCAAGTTATTTTTGAG-AAAATGCA--GTG--ACATATTTTACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGAGTTTATGTACTGCA---CTAAAGAGG-------TTA--TGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTGTGACAATATCTTTTGAACAAATGTAATAGATATACACACG--------AACTGCG--CAAAT----------------TGAATA-GAA-AGCGTATCTT-------------TATTTATGCAGACGTTAA-TA-A-TTT-TT-T-ATA-----T--T----T--TT--ATATCCAAAAAAAAAATTATCTGAATGTCTCGTACTTATATGA-TTTTAGATA--A-CTTTTATAACGATTTTATTGCTGAGTATTCTCTT------ACAAT---T---CA-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATCtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatactatccttatggtgataaatagtcttatgttattttgtattaccgctttccttatactgatccagagtccgtggcaggcttggtggaaaaaagcaagctatagatctacatagctcagtttaattttgagaaaaatgcagtgacatattataccaacgttttcattaaaacgtgcttagatttgtgtttatgtactgcactaaagagattgtgtacactaaacgggtgtcattatacaaagaatgacagctagtattacgcatacaattataaatctcttacaatatctttaaaagaaatgtaatagatatgcccacgaactgcacaacttaaacagatagcgtatctttatagtatatatttatgcaaacgttaatatattttaatatttggtttaaaatccaaaacataaattatctgactgtctcgtacttaaatgattttaaataacttttaaaacgattttgttgctgagtattctcttactagaattagtcttcattcattccaaaat
gi|3 : nnnnnnnnnnnnnnnnaccctaaccctattcaccctaaccctatatcccatgttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtatttgtatcaaggagtttgtgggaagcggaacaaccccccccccccccccccccaaaccttaacacgcacgcacgcacgcgcatcccggggaaatttcaaacgtcatcagatgttgcattctaaaatgTTCGTGTGAAAATTGAATTCTCTGATACTA-TCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCGCTTTCCTTATACTGATCCAGAGTCCGTGGCA----------G----------GCT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTAATTTTGAGAAAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACGTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGA-------TTG--TGTAC--ACTA--AACGG-GTGT---CATTATACAAAGAATGACAGCTAGTATTACGCATACAATTATAAATCTCTTACAATATCTTTAAAAGAAATGTAATAGATATGCCCACG--------AACTGCA--CAACT----------------TAAACA-GAT-AGCGTATCTTTATA----GTATATATTTATGCAAACGTTAA-TATA--TT-TT-A-ATA-----T--T----TGGTTTAAAATCCAAAACATAAATTATCTGACTGTCTCGTACTTAAATGA-TTTTAAATA--A-CTTTTAAAACGATTTTGTTGCTGAGTATTCTCTTAC---TAGAATTAGT---C--TTCATTCATTCCAAAAT---g
gi|4 : tcctcctgcgtttcttaaattctctcctctctgcgtgcctgccttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgTTTGTGTGAAAATTGAATTCTCTGATG------------GTAATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTAATC------------CACCTCGTGTCAG----------GTT-TGGT-GGAAAAAAAGCAAGCTACAGATCTACATTGCTCAAGTTACTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AATCTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG-------TTA--TGTAC--ACTT--AACAG-GTGT---CATTGTTCAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACACTGTCTTTTGAACAAATGTAATAGATA-GCGT--------------TTC-------T----------------T-AATA-G-------------TATA---------TATTTATGCAGACGTTAA-TGTA-GTT-TT-ATATA-----TGGT----T--TT--AAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTGAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTT------ACAAT---T---CA-TTCATTCATTCCAAAAT---TAA---AT
gi|5 : ataaaactaatcaataaacaatcgatttacctttagggagctcctcctatgtttcttaaattctctcctctctgcctgccttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgTTCGTGTGAAAATTGAATTCACTGATGCTAATCTTTATGGTGATAAATAGTTTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------TCCGTGGCAGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTATTTTTGAG-AAAATGCA--GTG--TCATAT---ACCAACGTTTTCATT-T----AAACTTGCTTACATTTGTGTTTATGTACTGCA---CTTAAGAGG-------TTA--TGTAC--ACT----------------------------AA--ACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATATAATAGATATGCACAAG--------AACTGCG--CAAAT----------------CTAACA-GAA-AGCGTACCTTTATA----GTATATATTAATGCAAACGTTA---------T-TT-G-G----------T----T--TT--AAATCCAAAACACAAAATATCTGAATGTCTCATACTTATATGA--TTTAAATA--ACCTTTTATAACGATTTTGTTGCTGAATATTCTCTTAC---TAGAAT---TAGAC--TTCATTCATTCCAAAAT---TAA---ATatttgtatatatgagacatgagcatcccatt
gi|6 : tctttgctttttgtatctgtatttctatcaaggagtttgtgggaatacatgagacacacacatcccggggaaatttcaaacgttaatcagatgctgcattctaaaatgTGCTAATCCTTATGGTGATAAATTGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------GTCCGCGGCAGGTT-TGGT-GAAAAA-AAGCAAGCTATAGATATACATAGCTCAGTTTAATTTTGAG-AAAATGCACAGTG--ATATATTATACCAACGTTTTCTTT-A----AAACTTGCTTAGATTTGTGTTTAAAAACTGCA---CTAAAGAGA-------TTA--TGTAC--ACTA--AACAG-GTGC---CATTGAACAAAGAAAGACAGCTAGTATTATGCATAATGTTATAAAACTCTGACAATATCTTTTGAATAAATATAATAAATATGCACACG--------AACTGCG--CATAT----------------TAAACA-GAA-AGTGTATGTTTACA----GTATATATTTATGCAGACGTAAA-TATA-TTT-TC---ATA-----T--TTGGGT--TT--AAATTCAAAACACAAAATATCTGAATTTCTCGTACTTATATGA-TTTTAAATA--A-ATTTTATAACGATTATGTTGCTGAGTACTCTCTTAC---TAGAAT---TAGAC--TTCATTCATTCCAAAAT---TAA---ATatatgtatatatgagacataatcatcccatt
gi|7 : ttgcatttcagtcaaatgttaacaaaacaaagcTCTTGGG-AAAATACA--CTGCAATATATTATTCCAACTTTTTCATTCAGCCCAAACTTAATGAGATGGATGGT-ATATATTGAATATCTAAAGAGGAGAATGCTTTCATGTATTTACTATAAATTG-ATGTTTTCATTGTATAATGAATGATAGCTACTAGTATGCATA---------AACTCTGACAATATCTTTTGAACAAATTTTACAGATATGCACACGGATGTCACAAATTCAATCAAATCTTGTTTTTATATACATGTATA-GGCTAGCATATGTTTACAACTTGTATATATTCAGGCCGATGTTAAATACAATTTATTAG-ATT-----TGGT----T--TG--AAATTCAAAACA----------AAATGTCTTATACTTATATGA-CTTTATATA--T-CTTTTATAAAGATTTTGTTGTTGATTATTCTCTTAC---TAGAAT---T---AA---GACTTATTCCAAAAT---TAT---ATataaatgaaatgtgtatatatgagatatgagcatcgctt
gi|8 : tcATGCA--GTG--ACATATTATACAAACATTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGAACTGCA---TTTAAGAGG-------TTA--TTTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACTGCTAGTATTACGCATACTATTATAAAACTCTGACAATATATTTTGAACAAATGTAATAGATATGCACATG--------AACTGCG--CAAAT----------------TAAACA-GAA-AGCGTATCTTTATA----GTATATATTCATGGAGACCTTAA-TATA-TTT-TT---ATATTTGGT--T----T--TT--A-ATCCAAAACACAAAATATCTGAATGTATCGTACTTATATGA-GTTTAAATA--A-CTTTTTTAACGATTTTGTTGCTGAGTATTCTCTTACTTGAATAAG---A---C--TTCATTCATTTTAAAATATATGAGTCATGAGCATCCCATTCTCacatataaatgaaatatgaatacattaggatcgcattctctcattgtgtctgtctgttctttctctccctctctgtctgtctctctcaatctctcaacaattat
gi|9 : --ATG--ACATATTTTACCAATGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG-------TTA--TGTAC--ACTC--AACAG-GTGT---CCTTGTACAAAGAATGACAGCTAGTATTACGAATACCTTTATAAAACTCTGACAATATATTTTGAATAAATGTAATAGATATGCACACG--------AACTGCG--CAAAT----------------TGAATACAAA-AGCGTATCTTTATA----GTATATTTTTATGCAGACGTTAA-TATA-TTT-TT---ATA-----T--T----T--TT--ATATCC-AAACACAAAATATCTGAATGTCTCATACTTATATGATTTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTT------ACAAT---T---CA-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|12 : --AATAGCGTGT---CATTGTATAATGAATGACAGTTAGTATTACGCATA
gi|10 : aatatgtaatactgtggtattaTACGCATACTATTATAAAACT--GACAAAATCATTTGAATAAATATAATAGATATGCACACA--------AACTGCG--CATAT----------------TAAACA-GAA-ATTGTATGCTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TC---ATG-----T--TTGAGT--TT--AAATTCAAAACACAAAATATCTGAATGTCTCGTACTTTTATGA-T------------CTTTTATAACGATTTTGTTGCTGAATATTCTCTTAC---TAGAAT---TAGAC--TTCATTCATTCCAAAAT---TAA---ATaatacaatttatttgatttggtttgaaaatttcttatacttatactatttcaaatataacttttgtaacgattttgttgttgattattctcctagaattagacttattccaaaactaaatacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|11 : TCTGACAATATCTTTTGAATGAATATAATAAATATGCACACG--------AACTGCG--CATAT----------------TAAACA-GAA-AGTGTATGTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TC---ATA-----T--TTGGGT--TT--AAATTCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--T-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---TAGAAT---TA--TACTTCATTCATTCCAAAAT---TAA---ATataaatgaaatgtgtatacatgtatatgagacatgagcatcgcattct
gi|12 : AATTTCTTATACTTATACTA-TTTCAAATATAA-CTTTTGTAACGATTTTGTTGTTGATTATTCTCCTAG---AA-------T---TA---GACTTATTCCAAAAC---TAA---ATatgaatgaaatgtgtatatatgagacatgagcatcgcatttt
gi|17 : aatatgtaatactgtggtattaaatagcgtgtcattgtataatgaatgacagttagtattacgcataaatacaatttatttgatttggtttgaaAATGCATTGTACTTAAATGA-TTTTAAATA--T-CTTTTATAACAATTTacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTCTTTTTATCTATAATATACTCTATAAAGTTGTTGTTATGATTTATTCTATAACACGAATTGAATTTATCCAATATTCCAATATGAATGAAATATGATGTATGTATAAAGATGGACTTGTACACAAAACGATCGCATTC
Unaligned ( gi|18 ): ACTCTAACCCTATATCTCATGTTCCACATTTCCTGAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66666666666666666666666666666666666 111111111 44444444444444444444 2222222222222222222 3333333333333
lowQualScore : 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 33333333333333333333333333333333333 6 6 6 3 1 5 66 66 4 9999 777 777777777 55 666 4 777 0 3 0 3 3 0 3 666 3 55555555555555555555 55 8888888888888888888 3 6666 5 8888888888888 555 666
lowQualScore : . .................................................................................................................................................... . ................................... . . . . . . .. .. . .... ... ......... .. ... . ... . . . . . . . ... . .................... .. ................... . .... . ............. ... ...
lowQualScore : 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 55555555555555555555555555555555555 7 7 7 0 0 7 99 11 4 4444 888 888888888 55 333 0 000 1 6 5 6 6 5 6 444 6 22222222222222222222 00 2222222222222222222 1 2222 4 3333333333333 888 444
consensus : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
Reference ( family-4295 ) : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|1 : CAATGTTCTACTGTATATTAAACTAATCAATAAACAATCAAGTAACCTTTAGGGTACTCCTCCTATGTTTCTTAAATTATCTCCTCTTTGCCTGCTTGCCTGCTTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATGGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCTTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCACAAGTTATTTTTGAG-AAAATGCA--ATG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTTTGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGAATACTTTTATAAAACTCTGACAATATCTTTTGAATAAATGTAATAGATATGCATACGAACTG-CGCAAATTGAA-TA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTTGATAT----T----T----------TT--ATATCCA-------------------AAACACATAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACAACAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|10 : aaaTACGCATACTATTATAAAACT--GACAAAATCATTTGAATAAATATAATAGATATGCACACAAACTG-CGCATATTAAA-CA-GAAATTGTATGCTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTC-ATGT----TTGAGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTTTATGA-T------------CTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---AT
gi|11 : TCTGACAATATCTTTTGAATGAATATAATAAATATGCACACGAACTG-CGCATATTAAA-CA-GAAAGTGTATGTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTC-ATAT----TTGGGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--T-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---TA--TAC---TTCATTCATTCCAAAAT---TAA---ATataaatgaaatgtgtatacatgtatatgagacatgagcatcgcattct
gi|12 : --ATTA--AATAGCGTGT---CATTGTATAATGAATGACAGTTAGTATTACGCATAatgaatgaaatgtgtatatatgagacatgagcatcgcatttt
gi|12 : aatatgtaatactgtggtAATTTCTTATACTTATACTA-TTTCAAATATAA-CTTTTGTAACGATTTTGTTGTTGATTATTCTC---CTAGAAT---T---AG-------ACTTATTCCAAAAC---TAA---ATaatacaatttatttgatttggtttgaaaatttcttatacttatactatttcaaatataacttttgtaacgattttgttgttgattattctcctagaattagacttattccaaaactaaatacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|14 : aatatgtaatactgtggtattaaatagcgtgtcattgtataatgaatgacagttagtattacgcataaatacaatttatttgatttggtttgaaCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|15 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|16 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|17 : gaaacagtAATGCATTGTACTTAAATGA-TTTTAAATA--T-CTTTTATAACAATTT
gi|2 : TTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTATTGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGG-GGGAAA-AAGCAAGCTATAGATCTACATAGCTCAAGTTATTTTTGAG-AAAATGCA--GTG--ACATATTTTACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGAGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTGTGACAATATCTTTTGAACAAATGTAATAGATATACACACGAACTG-CGCAAATTGAA-TA-GAAAGCGTATCTT---------TATTTATGC-AG---ACGTTAATAATTTTTT-ATAT----T----T----------TT--ATATCCA-------------------AAAAAAAAATTATCTGAATGTCTCGTACTTATATGA-TTTTAGATA--A-CTTTTATAACGATTTTATTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATCc
gi|3 : nnnnnnnnnnnnnnnnaccctaaccctattcaccctaaccctatatcccatgttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtatttgtatcaaggagtttgtgggaagcggaacaaccccccccccccccccccccaaaccttaacacgcacgcacgcacgcgcatcccggggaaatttcaaacgtcatcagatgttgcattctaaaatgTCCTCCTGCGTTTCTTAAATTCTCTCCTCTCTGCGTGCCTGCCTg
gi|3 : TTCGTGTGAAAATTGAATTCTCTGATACTA-TCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCGCTTTCCTTATACTGATCCAGAGTCCGTGGCA----------G----------GCT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTAATTTTGAGAAAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACGTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGA---------TTGTGTAC--ACTA--AACGG-GTGT---CATTATACAAAGAATGACAGCTAGTATTACGCATACAATTATAAATCTCTTACAATATCTTTAAAAGAAATGTAATAGATATGCCCACGAACTG-CACAACTTAAA-CA-GATAGCGTATCTTTATAGTATATATTTATGC-AA---ACGTTAATATATTTTA-ATAT----T----TGG--------TTTAAAATCCA-------------------AAACATAAATTATCTGACTGTCTCGTACTTAAATGA-TTTTAAATA--A-CTTTTAAAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGT---C-----TTCATTCATTCCAAAAT---tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatactatccttatggtgataaatagtcttatgttattttgtattaccgctttccttatactgatccagagtccgtggcaggcttggtggaaaaaagcaagctatagatctacatagctcagtttaattttgagaaaaatgcagtgacatattataccaacgttttcattaaaacgtgcttagatttgtgtttatgtactgcactaaagagattgtgtacactaaacgggtgtcattatacaaagaatgacagctagtattacgcatacaattataaatctcttacaatatctttaaaagaaatgtaatagatatgcccacgaactgcacaacttaaacagatagcgtatctttatagtatatatttatgcaaacgttaatatattttaatatttggtttaaaatccaaaacataaattatctgactgtctcgtacttaaatgattttaaataacttttaaaacgattttgttgctgagtattctcttactagaattagtcttcattcattccaaaat
gi|4 : tcctcctgcgtttcttaaattctctcctctctgcgtgcctgccttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgATAAAACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTTCC
gi|4 : TTTGTGTGAAAATTGAATTCTCTGATG------------GTAATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTAATC------------CACCTCGTGTCAG----------GTT-TGGT-GGAAAAAAAGCAAGCTACAGATCTACATTGCTCAAGTTACTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AATCTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTT--AACAG-GTGT---CATTGTTCAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACACTGTCTTTTGAACAAATGTAATAGATA------------G-CGTTTCTTA-------ATAGTATATATTTAT-GCAGACGTTAATGT-AG---------------TTTT-ATATATGGT----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTGAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatggtaataaatagtcttatgttattttgtattaccattttccttatactaatccacctcgtgtcaggtttggtggaaaaaaagcaagctacagatctacattgctcaagttacttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacacttaacaggtgtcattgttcaaagaatgacagctagtattacgcatactattataaaactctgacactgtcttttgaacaaatgtaatagatagcgtttcttaatagtatatatttatgcagacgttaatgtagttttatatatggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttgaataacttttataacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatcccatt
gi|5 : ataaaactaatcaataaacaatcgatttacctttagggagctcctcctatgtttcttaaattctctcctctctgcctgccttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgTTCGTGTGAAAATTGAATTCACTGATGCTAATCTTTATGGTGATAAATAGTTTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------TCCGTGGCAGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTATTTTTGAG-AAAATGCA--GTG--TCATAT---ACCAACGTTTTCATT-T----AAACTTGCTTACATTTGTGTTTATGTACTGCA---CTTAAGAGG---------TTATGTAC--ACTA--AACAG----------------------------CTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATATAATAGATATGCACAAGAACTG-CGCAAATCTAA-CA-GAAAGCGTACCTTTATAGTATATATTAATGC-AA---ACGT-----TATT-----TGG----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCATACTTATATGA--TTTAAATA--ACCTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---ATatttgtatatatgagacatgagcatcccatt
gi|6 : tctttgctttttgtatctgtatttctatcaaggagtttgtgggaatacatgagacacacacatcccggggaaatttcaaacgttaatcagatgctgcattctaaaatgTGCTAATCCTTATGGTGATAAATTGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------GTCCGCGGCAGGTT-TGGT-GAAAAA-AAGCAAGCTATAGATATACATAGCTCAGTTTAATTTTGAG-AAAATGCACAGTG--ATATATTATACCAACGTTTTCTTT-A----AAACTTGCTTAGATTTGTGTTTAAAAACTGCA---CTAAAGAGA---------TTATGTAC--ACTA--AACAG-GTGC---CATTGAACAAAGAAAGACAGCTAGTATTATGCATAATGTTATAAAACTCTGACAATATCTTTTGAATAAATATAATAAATATGCACACGAACTG-CGCATATTAAA-CA-GAAAGTGTATGTTTACAGTATATATTTATGC-AG---ACGTAAATATATTTTC-ATAT----TTGGGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATTTCTCGTACTTATATGA-TTTTAAATA--A-ATTTTATAACGATTATGTTGCTGAGTACTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---ATatatgtatatatgagacataatcatcccatt
gi|7 : ttgcatttcagtcaaatgttaacaaaacaaagcTCTTGGG-AAAATACA--CTGCAATATATTATTCCAACTTTTTCATTCAGCCCAAACTTAATGAGATGGATGGT-ATATATTGAATATCTAAAGAGGAGAATGCTTTCATGTATTTACTATAAATTG-ATGTTTTCATTGTATAATGAATGATAGCTACTAGTATGCATA---------AACTCTGACAATATCTTTTGAACAAATTTTACAGATATGCACACGGA-TGTCACAAATTCAATC---AAATCTTGTTTTTATA-TACATGTATAGGCTAGCATATGTTTACA-ACTTGT-ATATA---T----TCAGGCCGATGTT--AAATACAATTTATTAGATTTGGTTTGAAATTCAAAACA---AAATGTCTTATACTTATATGA-CTTTATATA--T-CTTTTATAAAGATTTTGTTGTTGATTATTCTCTTACTAGAAT---T---AA------GACTTATTCCAAAAT---TAT---ATataaatgaaatgtgtatatatgagatatgagcatcgctt
gi|8 : tcATGCA--GTG--ACATATTATACAAACATTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGAACTGCA---TTTAAGAGG---------TTATTTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACTGCTAGTATTACGCATACTATTATAAAACTCTGACAATATATTTTGAACAAATGTAATAGATATGCACATGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTCATGG-AG---ACCTTAATATATTTTT-ATATTTGGT----T----------TT--TAATCCA-------------------AAACACAAAATATCTGAATGTATCGTACTTATATGA-GTTTAAATA--A-CTTTTTTAACGATTTTGTTGCTGAGTATTCTCTTACTTGAAT--------AAGACTTCATTCATTTTAAAATATATGAGTCATGAGCATCCCATTCTCacatataaatgaaatatgaatacattaggatcgcattctctcattgtgtctgtctgttctttctctccctctctgtctgtctctctcaatctctcaacaattat
gi|9 : TG--ACATATTTTACCAATGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CCTTGTACAAAGAATGACAGCTAGTATTACGAATACCTTTATAAAACTCTGACAATATATTTTGAATAAATGTAATAGATATGCACACGAACTG-CGCAAATTGAA-TACAAAAGCGTATCTTTATAGTATATTTTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--ATATCC--------------------AAACACAAAATATCTGAATGTCTCATACTTATATGATTTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTCTTTTTATCTATAATATACTCTATAAAGTTGTTGTTATGATTTATTCTATAACACGAATTGAATTTATCCAATATTCCAATATGAATGAAATATGATGTATGTATAAAGATGGACTTGTACACAAAACGATCGCATTC
Unaligned ( gi|18 ): ACTCTAACCCTATATCTCATGTTCCACATTTCCTGAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66666666666666666666666666666666666 111111111 44444444444444444444 2222222222222222222 3333333333333
lowQualScore : 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 33333333333333333333333333333333333 6 6 6 1 1 5 66 66 4 9999 777 777777777 55 666 4 777 0 3 0 3 3 0 3 666 3 55555555555555555555 55 8888888888888888888 3 6666 5 8888888888888 555 666
lowQualScore : . .................................................................................................................................................. . ................................... . . . . . . .. .. . .... ... ......... .. ... . ... . . . . . . . ... . .................... .. ................... . .... . ............. ... ...
lowQualScore : 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 55555555555555555555555555555555555 7 7 7 0 0 7 99 11 4 4444 888 888888888 55 333 0 000 1 6 5 6 6 5 6 444 6 22222222222222222222 00 2222222222222222222 1 2222 4 3333333333333 888 444
consensus : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
Reference ( family-4295 ) : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|1 : CAATGTTCTACTGTATATTAAACTAATCAATAAACAATCAAGTAACCTTTAGGGTACTCCTCCTATGTTTCTTAAATTATCTCCTCTTTGCCTGCTTGCCTGCTTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATGGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCTTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCACAAGTTATTTTTGAG-AAAATGCA--ATG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTTTGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGAATACTTTTATAAAACTCTGACAATATCTTTTGAATAAATGTAATAGATATGCATACGAACTG-CGCAAATTGAA-TA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTTGATAT----T----T----------TT--ATATCCA-------------------AAACACATAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACAACAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|10 : aaaTACGCATACTATTATAAAACT--GACAAAATCATTTGAATAAATATAATAGATATGCACACAAACTG-CGCATATTAAA-CA-GAAATTGTATGCTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTC-ATGT----TTGAGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTTTATGA-T------------CTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---AT
gi|11 : TCTGACAATATCTTTTGAATGAATATAATAAATATGCACACGAACTG-CGCATATTAAA-CA-GAAAGTGTATGTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTC-ATAT----TTGGGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--T-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---TA--TAC---TTCATTCATTCCAAAAT---TAA---ATataaatgaaatgtgtatacatgtatatgagacatgagcatcgcattct
gi|12 : --ATTA--AATAGCGTGT---CATTGTATAATGAATGACAGTTAGTATTACGCATAatgaatgaaatgtgtatatatgagacatgagcatcgcatttt
gi|12 : aatatgtaatactgtggtAATTTCTTATACTTATACTA-TTTCAAATATAA-CTTTTGTAACGATTTTGTTGTTGATTATTCTC---CTAGAAT---T---AG-------ACTTATTCCAAAAC---TAA---ATaatacaatttatttgatttggtttgaaaatttcttatacttatactatttcaaatataacttttgtaacgattttgttgttgattattctcctagaattagacttattccaaaactaaatacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|14 : aatatgtaatactgtggtattaaatagcgtgtcattgtataatgaatgacagttagtattacgcataaatacaatttatttgatttggtttgaaCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|15 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|16 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|17 : gaaacagtAATGCATTGTACTTAAATGA-TTTTAAATA--T-CTTTTATAACAATTT
gi|2 : TTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTATTGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGG-GGGAAA-AAGCAAGCTATAGATCTACATAGCTCAAGTTATTTTTGAG-AAAATGCA--GTG--ACATATTTTACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGAGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTGTGACAATATCTTTTGAACAAATGTAATAGATATACACACGAACTG-CGCAAATTGAA-TA-GAAAGCGTATCTT---------TATTTATGC-AG---ACGTTAATAATTTTTT-ATAT----T----T----------TT--ATATCCA-------------------AAAAAAAAATTATCTGAATGTCTCGTACTTATATGA-TTTTAGATA--A-CTTTTATAACGATTTTATTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATCc
gi|3 : nnnnnnnnnnnnnnnnaccctaaccctattcaccctaaccctatatcccatgttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtatttgtatcaaggagtttgtgggaagcggaacaaccccccccccccccccccccaaaccttaacacgcacgcacgcacgcgcatcccggggaaatttcaaacgtcatcagatgttgcattctaaaatgTCCTCCTGCGTTTCTTAAATTCTCTCCTCTCTGCGTGCCTGCCTg
gi|3 : TTCGTGTGAAAATTGAATTCTCTGATACTA-TCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCGCTTTCCTTATACTGATCCAGAGTCCGTGGCA----------G----------GCT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTAATTTTGAGAAAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACGTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGA---------TTGTGTAC--ACTA--AACGG-GTGT---CATTATACAAAGAATGACAGCTAGTATTACGCATACAATTATAAATCTCTTACAATATCTTTAAAAGAAATGTAATAGATATGCCCACGAACTG-CACAACTTAAA-CA-GATAGCGTATCTTTATAGTATATATTTATGC-AA---ACGTTAATATATTTTA-ATAT----T----TGG--------TTTAAAATCCA-------------------AAACATAAATTATCTGACTGTCTCGTACTTAAATGA-TTTTAAATA--A-CTTTTAAAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGT---C-----TTCATTCATTCCAAAAT---tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatactatccttatggtgataaatagtcttatgttattttgtattaccgctttccttatactgatccagagtccgtggcaggcttggtggaaaaaagcaagctatagatctacatagctcagtttaattttgagaaaaatgcagtgacatattataccaacgttttcattaaaacgtgcttagatttgtgtttatgtactgcactaaagagattgtgtacactaaacgggtgtcattatacaaagaatgacagctagtattacgcatacaattataaatctcttacaatatctttaaaagaaatgtaatagatatgcccacgaactgcacaacttaaacagatagcgtatctttatagtatatatttatgcaaacgttaatatattttaatatttggtttaaaatccaaaacataaattatctgactgtctcgtacttaaatgattttaaataacttttaaaacgattttgttgctgagtattctcttactagaattagtcttcattcattccaaaat
gi|4 : tcctcctgcgtttcttaaattctctcctctctgcgtgcctgccttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgATAAAACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTTCC
gi|4 : TTTGTGTGAAAATTGAATTCTCTGATG------------GTAATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTAATC------------CACCTCGTGTCAG----------GTT-TGGT-GGAAAAAAAGCAAGCTACAGATCTACATTGCTCAAGTTACTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AATCTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTT--AACAG-GTGT---CATTGTTCAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACACTGTCTTTTGAACAAATGTAATAGATA------------G-CGTTTCTTA-------ATAGTATATATTTAT-GCAGACGTTAATGT-AG---------------TTTT-ATATATGGT----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTGAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatggtaataaatagtcttatgttattttgtattaccattttccttatactaatccacctcgtgtcaggtttggtggaaaaaaagcaagctacagatctacattgctcaagttacttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacacttaacaggtgtcattgttcaaagaatgacagctagtattacgcatactattataaaactctgacactgtcttttgaacaaatgtaatagatagcgtttcttaatagtatatatttatgcagacgttaatgtagttttatatatggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttgaataacttttataacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatcccatt
gi|5 : ataaaactaatcaataaacaatcgatttacctttagggagctcctcctatgtttcttaaattctctcctctctgcctgccttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgTTCGTGTGAAAATTGAATTCACTGATGCTAATCTTTATGGTGATAAATAGTTTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------TCCGTGGCAGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTATTTTTGAG-AAAATGCA--GTG--TCATAT---ACCAACGTTTTCATT-T----AAACTTGCTTACATTTGTGTTTATGTACTGCA---CTTAAGAGG---------TTATGTAC--ACTA--AACAG----------------------------CTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATATAATAGATATGCACAAGAACTG-CGCAAATCTAA-CA-GAAAGCGTACCTTTATAGTATATATTAATGC-AA---ACGT-----TATT-----TGG----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCATACTTATATGA--TTTAAATA--ACCTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---ATatttgtatatatgagacatgagcatcccatt
gi|6 : tctttgctttttgtatctgtatttctatcaaggagtttgtgggaatacatgagacacacacatcccggggaaatttcaaacgttaatcagatgctgcattctaaaatgTGCTAATCCTTATGGTGATAAATTGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------GTCCGCGGCAGGTT-TGGT-GAAAAA-AAGCAAGCTATAGATATACATAGCTCAGTTTAATTTTGAG-AAAATGCACAGTG--ATATATTATACCAACGTTTTCTTT-A----AAACTTGCTTAGATTTGTGTTTAAAAACTGCA---CTAAAGAGA---------TTATGTAC--ACTA--AACAG-GTGC---CATTGAACAAAGAAAGACAGCTAGTATTATGCATAATGTTATAAAACTCTGACAATATCTTTTGAATAAATATAATAAATATGCACACGAACTG-CGCATATTAAA-CA-GAAAGTGTATGTTTACAGTATATATTTATGC-AG---ACGTAAATATATTTTC-ATAT----TTGGGT----------TT--AAATTCA-------------------AAACACAAAATATCTGAATTTCTCGTACTTATATGA-TTTTAAATA--A-ATTTTATAACGATTATGTTGCTGAGTACTCTCTTACTAGAAT---TAGAC-----TTCATTCATTCCAAAAT---TAA---ATatatgtatatatgagacataatcatcccatt
gi|7 : ttgcatttcagtcaaatgttaacaaaacaaagcTCTTGGG-AAAATACA--CTGCAATATATTATTCCAACTTTTTCATTCAGCCCAAACTTAATGAGATGGATGGT-ATATATTGAATATCTAAAGAGGAGAATGCTTTCATGTATTTACTATAAATTG-ATGTTTTCATTGTATAATGAATGATAGCTACTAGTATGCATA---------AACTCTGACAATATCTTTTGAACAAATTTTACAGATATGCACACGGA-TGTCACAAATTCAATC---AAATCTTGTTTTTATA-TACATGTATAGGCTAGCATATGTTTACA-ACTTGT-ATATA---T----TCAGGCCGATGTT--AAATACAATTTATTAGATTTGGTTTGAAATTCAAAACA---AAATGTCTTATACTTATATGA-CTTTATATA--T-CTTTTATAAAGATTTTGTTGTTGATTATTCTCTTACTAGAAT---T---AA------GACTTATTCCAAAAT---TAT---ATataaatgaaatgtgtatatatgagatatgagcatcgctt
gi|8 : tcATGCA--GTG--ACATATTATACAAACATTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGAACTGCA---TTTAAGAGG---------TTATTTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACTGCTAGTATTACGCATACTATTATAAAACTCTGACAATATATTTTGAACAAATGTAATAGATATGCACATGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTCATGG-AG---ACCTTAATATATTTTT-ATATTTGGT----T----------TT--TAATCCA-------------------AAACACAAAATATCTGAATGTATCGTACTTATATGA-GTTTAAATA--A-CTTTTTTAACGATTTTGTTGCTGAGTATTCTCTTACTTGAAT--------AAGACTTCATTCATTTTAAAATATATGAGTCATGAGCATCCCATTCTCacatataaatgaaatatgaatacattaggatcgcattctctcattgtgtctgtctgttctttctctccctctctgtctgtctctctcaatctctcaacaattat
gi|9 : TG--ACATATTTTACCAATGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CCTTGTACAAAGAATGACAGCTAGTATTACGAATACCTTTATAAAACTCTGACAATATATTTTGAATAAATGTAATAGATATGCACACGAACTG-CGCAAATTGAA-TACAAAAGCGTATCTTTATAGTATATTTTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--ATATCC--------------------AAACACAAAATATCTGAATGTCTCATACTTATATGATTTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
blockSeqs : A CAGAGTCCGTGGCAG G A A G T A CA CA C GCCC TAT AGAATGCTT TT ATA C TTT T T C T CAT . ATTCAGGCCGATG TA ATTTATTAGATTTGGTTTG T TAA T TAGAC ATA GTC
blockSeqs : A CACCTCGTGTCAG . . . T A . . . . . . . . A . . . . . . . . TTGAGT . . . AC T TATAC . .
blockSeqs : A CAGTCCGCGGCAG . . . G C . . . . . . . . C . . . . . . . . TTGGGT . . . T T TAGTC . .
blockSeqs : . CAG . . . T T . . . . . . . . A . . . . . . . . ATGGTT . . . T T TAGAC . .
blockSeqs : . CAG . . . T A . . . . . . . . T . . . . . . . . TTGGGT . . . A T TAGAC . .
blockSeqs : . . . . . . . . A . . . . . . . . TTGGTT . . . A T AAGAC . .
blockSeqs : . . . . . . . A . . . . . . . . TTGG . . . A T TAG . .
blockSeqs : . . . . . . A . . . . . . . . TT . . . A T TCA . .
blockSeqs : . C . . . . . . . . TT . . . T . TCA . .
blockSeqs : . . . . . . TT . . . A . TAA . .
blockSeqs : . A . TCA .
blockSeqs : . .
blockSeqCons : CACCCGTGCAG************************ TTGGT*************** TAGAC********
originalCons : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATC------------CA----------G----------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATAT----T----T----------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAAT---T---CA----TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
finalCons : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATCCACCCGTGCAG------------------------GTT-TGGT-GGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAG-AAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCACACGAACTG-CGCAAATTAAA-CA-GAAAGCGTATCTTTATAGTATATATTTATGC-AG---ACGTTAATATATTTTT-ATATTTGGT---------------TT--AAATCCA-------------------AAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC--------TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTCTTTTTATCTATAATATACTCTATAAAGTTGTTGTTATGATTTATTCTATAACACGAATTGAATTTATCCAATATTCCAATATGAATGAAATATGATGTATGTATAAAGATGGACTTGTACACAAAACGATCGCATTC
Unaligned ( gi|18 ): ACTCTAACCCTATATCTCATGTTCCACATTTCCTGAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 66666666666 111111111 111111111 1111111111 111111 111111 111111
lowQualScore : 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 77777777777 1 6 1 1 5 66 66 4 9999 777 777777777 55 666 4 777 0 444444444 55 0 5555555555 7 000000 1 7777 3 3 3 3 999999 7 3 6666 5 555555 555 666
lowQualScore : . .................................................................................................................................................. . ........... . . . . . .. .. . .... ... ......... .. ... . ... . ......... .. . .......... . ...... . .... . . . . ...... . . .... . ...... ... ...
lowQualScore : 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 88888888888 7 7 0 0 0 99 11 4 4444 888 888888888 55 333 0 000 1 555555555 00 5 9999999999 3 555555 4 7777 6 6 6 6 888888 3 1 2222 4 666666 888 444
consensus : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATCCAG--TC-CGTGGCAGGTTTGGTGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAGAAAA-TGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCAC---------ACGAACTGCG--CAAAT----------TAAACA-GAA------AGCGTATCTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TT-ATATTT-G-G-TTT-AAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATT-AGAC-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
Reference ( family-4295 ) : NNNCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATCCA---CC-CGTG-CAGGTTTGGTGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGNTTANTTTTGAGAAAA-TGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATGTAATAGATATGCAC---------ACGAACTGCG--CAAAT----------TAAACA-GAA------AGCGTATCTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TT-ATATTT-G-G-TTT-AAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATT-AGAC-TTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|1 : CAATGTTCTACTGTATATTAAACTAATCAATAAACAATCAAGTAACCTTTAGGGTACTCCTCCTATGTTTCTTAAATTATCTCCTCTTTGCCTGCTTGCCTGCTTGCCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGTGAAAATGGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCATTTTCTTTATACTGATCCA-------------GGTTTGGTGGAAAA-AAGCAAGCTATAGATCTACATAGCACAAGTTATTTTTGAGAAAA-TGCA--ATG--ACATATTATACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTTTGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGAATACTTTTATAAAACTCTGACAATATCTTTTGAATAAATGTAATAGATATGCAT---------ACGAACTGCG--CAAAT----------TGAATA-GAA------AGCGTATCTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TTGATATT------TTT-ATATCCAAAACACATAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACAACAATT----CATTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
gi|10 : aaaTACGCATACTATTATAAAACT--GACAAAATCATTTGAATAAATATAATAGATATGCAC---------ACAAACTGCG--CATAT----------TAAACA-GAA------ATTGTATGCTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TC-ATGTTT-GAG-TTT-AAATTCAAAACACAAAATATCTGAATGTCTCGTACTTTTATGA-T------------CTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAATT-AGAC-TTCATTCATTCCAAAAT---TAA---AT
gi|11 : TCTGACAATATCTTTTGAATGAATATAATAAATATGCAC---------ACGAACTGCG--CATAT----------TAAACA-GAA------AGTGTATGTTTATA----GTATATATTTATGCAGACGTTAA-TATA-TTT-TC-ATATTT-G-GGTTT-AAATTCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTAAATA--T-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATT-ATAC-TTCATTCATTCCAAAAT---TAA---ATataaatgaaatgtgtatacatgtatatgagacatgagcatcgcattct
gi|12 : --ATTA--AATAGCGTGT---CATTGTATAATGAATGACAGTTAGTATTACGCATAatgaatgaaatgtgtatatatgagacatgagcatcgcatttt
gi|12 : aatatgtaatactgtggtAATTTCTTATACTTATACTA-TTTCAAATATAA-CTTTTGTAACGATTTTGTTGTTGATTATTCTC---CTAGAATT-AGAC-TT-----ATTCCAAAAC---TAA---ATaatacaatttatttgatttggtttgaaaatttcttatacttatactatttcaaatataacttttgtaacgattttgttgttgattattctcctagaattagacttattccaaaactaaatacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|14 : aatatgtaatactgtggtattaaatagcgtgtcattgtataatgaatgacagttagtattacgcataaatacaatttatttgatttggtttgaaCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCacaaatgaaatatgtatgcatacataaggatcgaattgtacgcatgaggatcgtattct
gi|15 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|16 : gaaacagtCAAAGTTCTTCTGTATATTAAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGC
gi|17 : gaaacagtAATGCATTGTACTTAAATGA-TTTTAAATA--T-CTTTTATAACAATTT
gi|2 : TTCGTGTGAAAATTGAATTCTCTGATGCTAATCCTTATGGTGATAAATAGTCTATTGTTATTTTGTATTACCATTTTCCTTATACTGATCCA-------------GGTTTGGGGGGAAA-AAGCAAGCTATAGATCTACATAGCTCAAGTTATTTTTGAGAAAA-TGCA--GTG--ACATATTTTACCAACGTTTTCATT-A----AAACTTGCTTAGATTTGAGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTGTGACAATATCTTTTGAACAAATGTAATAGATATACAC---------ACGAACTGCG--CAAAT----------TGAATA-GAA------AGCGTATCTT-------------TATTTATGCAGACGTTAA-TAAT-TTT-TT-ATATT------TTT-ATATCCAAAAAAAAAATTATCTGAATGTCTCGTACTTATATGA-TTTTAGATA--A-CTTTTATAACGATTTTATTGCTGAGTATTCTCTTAC---AATT----CATTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATCc
gi|3 : nnnnnnnnnnnnnnnnaccctaaccctattcaccctaaccctatatcccatgttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtatttgtatcaaggagtttgtgggaagcggaacaaccccccccccccccccccccaaaccttaacacgcacgcacgcacgcgcatcccggggaaatttcaaacgtcatcagatgttgcattctaaaatgTCCTCCTGCGTTTCTTAAATTCTCTCCTCTCTGCGTGCCTGCCTg
gi|3 : TTCGTGTGAAAATTGAATTCTCTGATACTA-TCCTTATGGTGATAAATAGTCTTATGTTATTTTGTATTACCGCTTTCCTTATACTGATCCAGAGTC-CGTGGCAGGCTTGGTGGAAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTAATTTTGAGAAAAATGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AAACGTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGA---------TTGTGTAC--ACTA--AACGG-GTGT---CATTATACAAAGAATGACAGCTAGTATTACGCATACAATTATAAATCTCTTACAATATCTTTAAAAGAAATGTAATAGATATGCCC---------ACGAACTGCA--CAACT----------TAAACA-GAT------AGCGTATCTTTATA----GTATATATTTATGCAAACGTTAA-TATA-TTT-TA-ATATTT-G-G-TTTAAAATCCAAAACATAAATTATCTGACTGTCTCGTACTTAAATGA-TTTTAAATA--A-CTTTTAAAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATT-AGTC-TTCATTCATTCCAAAAT---tcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatactatccttatggtgataaatagtcttatgttattttgtattaccgctttccttatactgatccagagtccgtggcaggcttggtggaaaaaagcaagctatagatctacatagctcagtttaattttgagaaaaatgcagtgacatattataccaacgttttcattaaaacgtgcttagatttgtgtttatgtactgcactaaagagattgtgtacactaaacgggtgtcattatacaaagaatgacagctagtattacgcatacaattataaatctcttacaatatctttaaaagaaatgtaatagatatgcccacgaactgcacaacttaaacagatagcgtatctttatagtatatatttatgcaaacgttaatatattttaatatttggtttaaaatccaaaacataaattatctgactgtctcgtacttaaatgattttaaataacttttaaaacgattttgttgctgagtattctcttactagaattagtcttcattcattccaaaat
gi|4 : tcctcctgcgtttcttaaattctctcctctctgcgtgcctgccttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgATAAAACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTTCC
gi|4 : TTTGTGTGAAAATTGAATTCTCTGATG------------GTAATAAATAGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTAATCCA---CCTCGTGTCAGGTTTGGTGGAAAAAAAGCAAGCTACAGATCTACATTGCTCAAGTTACTTTTGAGAAAA-TGCA--GTG--ACATATTATACCAACGTTTTCATT-A----AATCTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTT--AACAG-GTGT---CATTGTTCAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTCTGACACTGTCTTTTGAACAAATGTAATAGATA---------------------GCG--TTTCT----------TA------AT------AGTATATATTTAT-----GCAGACGTTAATGTAG--------------TT-TT-ATATAT-G-GTTTT-AAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGA-TTTTGAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT----CATTCATTCATTCCAAAAT---TAA---ATacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatggtaataaatagtcttatgttattttgtattaccattttccttatactaatccacctcgtgtcaggtttggtggaaaaaaagcaagctacagatctacattgctcaagttacttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacacttaacaggtgtcattgttcaaagaatgacagctagtattacgcatactattataaaactctgacactgtcttttgaacaaatgtaatagatagcgtttcttaatagtatatatttatgcagacgttaatgtagttttatatatggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttgaataacttttataacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatcccatt
gi|5 : ataaaactaatcaataaacaatcgatttacctttagggagctcctcctatgtttcttaaattctctcctctctgcctgccttccacatttcctgagcgtttttaatatcttttctttactttttgaatctgtataaagtttgtatacacgcacacgtacgcacacatatccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgTTCGTGTGAAAATTGAATTCACTGATGCTAATCTTTATGGTGATAAATAGTTTTATGTTATTTTGTATTACCATTTTCCTTATACTGATCCAG--TC-CGTGGCAGG--------AAAA-AAGCAAGCTATAGATCTACATAGCTCAGTTTATTTTTGAGAAAA-TGCA--GTG--TCATAT---ACCAACGTTTTCATT-T----AAACTTGCTTACATTTGTGTTTATGTACTGCA---CTTAAGAGG---------TTATGTAC--ACTA--AACAG----------------------------CTAGTATTACGCATACTATTATAAAACTCTGACAATATCTTTTGAACAAATATAATAGATATGCAC---------AAGAACTGCG--CAAAT----------CTAACA-GAA------AGCGTACCTTTATA----GTATATATTAATGCAAACGT-----------------TATTT-G-GTTTT-AAATCCAAAACACAAAATATCTGAATGTCTCATACTTATATGA--TTTAAATA--ACCTTTTATAACGATTTTGTTGCTGAATATTCTCTTACTAGAATT-AGAC-TTCATTCATTCCAAAAT---TAA---ATatttgtatatatgagacatgagcatcccatt
gi|6 : tctttgctttttgtatctgtatttctatcaaggagtttgtgggaatacatgagacacacacatcccggggaaatttcaaacgttaatcagatgctgcattctaaaatgTGCTAATCCTTATGGTGATAAATTGTCTTATGTTATTTTGTATTACCATTTTCCTTATACTGATCCAG--TC-CGCGGCAGGTTTGGTGAAAAA-AAGCAAGCTATAGATATACATAGCTCAGTTTAATTTTGAGAAAA-TGCACAGTG--ATATATTATACCAACGTTTTCTTT-A----AAACTTGCTTAGATTTGTGTTTAAAAACTGCA---CTAAAGAGA---------TTATGTAC--ACTA--AACAG-GTGC---CATTGAACAAAGAAAGACAGCTAGTATTATGCATAATGTTATAAAACTCTGACAATATCTTTTGAATAAATATAATAAATATGCAC---------ACGAACTGCG--CATAT----------TAAACA-GAA------AGTGTATGTTTACA----GTATATATTTATGCAGACGTAAA-TATA-TTT-TC-ATATTTGG-G-TTT-AAATTCAAAACACAAAATATCTGAATTTCTCGTACTTATATGA-TTTTAAATA--A-ATTTTATAACGATTATGTTGCTGAGTACTCTCTTACTAGAATT-AGAC-TTCATTCATTCCAAAAT---TAA---ATatatgtatatatgagacataatcatcccatt
gi|7 : ttgcatttcagtcaaatgttaacaaaacaaagcTCTTGGGAAAA-TACA--CTGCAATATATTATTCCAACTTTTTCATTCAGCCCAAACTTAATGAGATGGATGGT-ATATATTGAATATCTAAAGAGGAGAATGCTTTCATGTATTTACTATAAATTG-ATGTTTTCATTGTATAATGAATGATAGCTACTAGTATGCATA---------AACTCTGACAATATCTTTTGAACAAATTTTACAGATATGCACACGGATGTCACAAATT-CAATCAAATCTTGTTTTTATATACATGTATAGGCTAGCATATGTTTACAACTTGTATATATTCAGGCCGATGTTAAATACAATTTATT-AGATTT-G-G-TTTGAAATTCAAAACA----------AAATGTCTTATACTTATATGA-CTTTATATA--T-CTTTTATAAAGATTTTGTTGTTGATTATTCTCTTACTAGAATTAAGAC-TT-----ATTCCAAAAT---TAT---ATataaatgaaatgtgtatatatgagatatgagcatcgctt
gi|8 : tcA-TGCA--GTG--ACATATTATACAAACATTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGAACTGCA---TTTAAGAGG---------TTATTTAC--ACTA--AACAG-GTGT---CATTGTACAAAGAATGACTGCTAGTATTACGCATACTATTATAAAACTCTGACAATATATTTTGAACAAATGTAATAGATATGCAC---------ATGAACTGCG--CAAAT----------TAAACA-GAA------AGCGTATCTTTATA----GTATATATTCATGGAGACCTTAA-TATA-TTT-TT-ATATTT-G-GTTTT-TAATCCAAAACACAAAATATCTGAATGTATCGTACTTATATGA-GTTTAAATA--A-CTTTTTTAACGATTTTGTTGCTGAGTATTCTCTTACTTGAATA-AGAC-TTCATTCATTTTAAAATATATGAGTCATGAGCATCCCATTCTCacatataaatgaaatatgaatacattaggatcgcattctctcattgtgtctgtctgttctttctctccctctctgtctgtctctctcaatctctcaacaattat
gi|9 : TG--ACATATTTTACCAATGTTTTCATT-A----AAACTTGCTTAGATTTGTGTTTATGTACTGCA---CTAAAGAGG---------TTATGTAC--ACTC--AACAG-GTGT---CCTTGTACAAAGAATGACAGCTAGTATTACGAATACCTTTATAAAACTCTGACAATATATTTTGAATAAATGTAATAGATATGCAC---------ACGAACTGCG--CAAAT----------TGAATACAAA------AGCGTATCTTTATA----GTATATTTTTATGCAGACGTTAA-TATA-TTT-TT-ATATT------TTT-ATATCC-AAACACAAAATATCTGAATGTCTCATACTTATATGATTTTTAAATA--A-CTTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT----CATTCATTCATTCCAAAAT---TAA---ATGAGCATCCCATTATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTCTTTTTATCTATAATATACTCTATAAAGTTGTTGTTATGATTTATTCTATAACACGAATTGAATTTATCCAATATTCCAATATGAATGAAATATGATGTATGTATAAAGATGGACTTGTACACAAAACGATCGCATTC
Unaligned ( gi|18 ): ACTCTAACCCTATATCTCATGTTCCACATTTCCTGAGC