lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 11 3333 2222222 2 11 1 1 444444444444 1 888888888888888888888 1 1111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 22
lowQualScore : 5 3 00 1111 33 5555555 0 3 0 3 00 6 2 1 1 2 7 1 3 6 888888 000000000000 3 3 6 333333333333333333333 9 11 3 4 1 9999999 99 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 2 6 5 77 8 6 8
lowQualScore : . . .. .... .. ....... . . . . .. . . . . . . . . . ...... ............ . . . ..................... . .. . . . ....... .. ........................................................................................................................................................................................................... ... . . . .. . . .
lowQualScore : 4 9 00 7777 88 8888888 4 3 5 3 00 8 7 4 4 7 3 2 0 4 666666 444444444444 6 2 6 888888888888888888888 8 66 0 8 8 6666666 00 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 5 0 0 22 8 0 8
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAACAGGAAGTATATGA-TTANATTTTCTTGT-CTCCCCT-TATGACAGGC--ATTCTCAGATATCGTAACTTTGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCATATTTTCAA-CTNG-ATAT----AT------A-ATATATTTAAAGGCAATACGTTCATATA-AG--CA-AAT-G---TTTCGGTGGTATATAAATATCTATTTGAGAAGGC--GTAT-AAAA-TATATGATATTATAACAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCACGCATATGTATG-------------TATGC----TACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTG---T--------------------TTTGTTGTTTTTTCTTT--T--TCGTTGTTT-ATTG-TTATATCAATA-TNTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
Reference ( gi|1 ) : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAACAGGAAGTATATGA-TGAACTTTTCTTGT-TTCTCCT-TATGACAGGC--ATTCACAGATATTATAACTTTGTATGT-GGACAGGACACACTAGCACACAAATGGATGCATATTTTCAA-TTAA-ATAT----TT------A-ATATATTTCAAGGCAAAACGTTCATATG-AA--TA-AAT-G---T---GGTGATATATAAATATCCATTTGAGTAGGC--GTA--AAAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCACGCATCT-TAT--------------TATG-----TACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTG---TATA---------------TATTTATTAATTTATCATTAATA-TCATCATTT-ACTA-TTATATCAAAA-TCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|12 : CATTTTATAAGCAGATAAAA-----------AATA-----TATATGA-TTA--------TAT-TTC-CGT-TATGACAGGC--ATTCTCAGATATCATAACTTTGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTGTATTATTAA-CTTA-ATAT----AT------A-ATATATTT
gi|4 : ATGTTATAAGCAGAGAAAA----AAAG--AAGTAAGAAGTATATGA-TTAACTTTTCTTGT-CTCCCCC-TATGAAATGC--ATTCTCAGATATCATAACTTTGCATTT-GGACAGGACACACCAGCACACAAATGGATGCATATTTTCAA-CTTA-ATAC----AC------A-ATACATTTAAAGGCAAAACGTTCATATA-A----A-AAT-GATTT---GGTAGTATATAAATCTCCATTTAAGTAGAC--TTG--AAAA-AATAT--T-TCATTACAA----TTTCATTACAATa
gi|9 : ATTTTGTAAGCAGATAAAAGAAAAATAGTAAA----AAGTATATGA-TTATATTTTCTTGT-CTC-CCT-TATGATAGGC--ATTCTCAGATATCATAACTTTGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTATATTTTTAA-CTAG-ATAT----AT------A-CTATATTg
gi|8 : ATTTTGTAAGCAGATAAAA--AAAAAA--TAGTAAAAAGTATATGA-TTATATTTTCTTGT-CTC-CCT-TATGACAGGC--ATTCTCAGATATCGTAACTTGGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTATATTTT-AA-CTAG-ATAA----AT------A-ATAT-TTT
gi|14 : aagTTTTATAAGCAGATAAAAAAAAGAAG--AAA---GAAGTATATGATTAAATTTTTATTGT-CTTCCCT-T
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA----AAGTATATGA-TTATATTATCTTGT-CTC-CCT-TATGACAGGC--ATTCTCAGATATCATAACTTTGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTATATTTTTAA-CTAG-ATAT----AT------A-ATATATTTtaatatataatatatttaaaagcaaaactttcat
gi|11 : AGCAGATAAAAGAAAAAAT--AG-TAAAAAGTATATGA-TTATATTTTCTTGT-CTC-CCT-TATGAAAGGC--ATTCTCAGATATCATAACTTTGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTATATTTTTAA-CTAG-ATAT----AT------A-ATATATTTaa
gi|6 : ttAAACAGAGAAA--AAACA---AGTATATCG-TTAACTTTTCTTGT-TTCCACC-TATGACA-----------------------TTT-----T-GGACAGGACATACTAGCACACCAATAGGTGCAATTTTTCAACTTAAGATATAACATT------ACATGCATGTAAAGACAAAACGTTCATATA-CA--TC-AATTG---TTTCGGTTATATATCAATCTCTATTTGAGAAGGT--GTA--AAAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|15 : ttatAAAAAAA--GAA----AAATATATGA-TTATATTTTCTTGT-TTC-CCT-TATGACAGGT--ATTCTCAGATATCATAACTTTGTGTTT-GAACA
gi|7 : cagatAGAAA--AAACTGAAAGCGTATT--TGAG-------TGTATTCTTTC-AATGACATGCGTATTCTCAGATCGTATAA-TTTATATTTTAAACAGGACAC--TAGCTCAGAGATGTGTGCTCATT---AA-TTTA-ATATAATTTT------A-ATATATTTTTAGGCAATAAGTTCATAC--AG--CA-ACT-G---TTTCGCTGGTATGTATATATCTATaca
gi|2 : aaggttatattagctgA--AAAAAGGAAGTATACGA-------------GT-CTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTAA-TTTATATGTTAGACAGGACACACTAGTACACAGATGCGTGCACATCTTCAA-TCTA-ATATAA--TTCTAATAA-ATATATTTAAAGGCAATACGTTCATATA-CAGCTATGAT-T---C---GGTG---------------TTTGAGAACGCATATA--GAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTATAATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTA---T--------------------TTTGTTGTTTTTTCTTT--TACTTGTT-TTT-CTTAGTTATATCAATA-TATATGCGTTTCTT-TATAAAATTATGAACATAATGCACA
gi|13 : gcattatatacgctgatAACAGAGACCATATG--TGTAC----ATTGT-TTGTCGT-C-TGCC-GGC--GTTCTCAGATATTGTGACTTTGTGTTT-AGACAGGACATACAAGCATACAGATGTAAAC-TATTT---A-T----ATAT--------------ATATAT
gi|3 : ttat-ATATATTTAAAGGCAATATGTTCATATACAG--CA-ATT-G---TTTCAGTGGTATATAACTATCTATTTGAGAAGGC--ATATAGAAA-TATATGATATTATAATAATTTG----------GCTCTATCA---------AGTTGAAGAAAGCACGCAT----ATG-------------TATAC----TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTG---T--------------------TTTGTTG-TTT-TCTTTCAT--TTGTTGTTC-ATAG-TTATAACAATA-TCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACAa
gi|5 : agATATATATTTGAGAAGAC--ATAT-AAAACTATAT--G---ATA----------TTGTTATAATTTAGCTAGA---T-CGAGTTGAACAAAGCACGCATATATAT--------------AA-------TACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGTTTTACAGTGTGTGTTTTCTTTCATTTTTTTTTTTTTCATT-TTT-TCATAGTTTAACTG-TTAGATCAACA-TCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCAC
gi|17 : tTATAAAAAGTATATGCGTATCTTTAATAGAATTATTAACAGCATCCACA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 22222 111 1111111 1111111 222 1 111 1111 5555555555555555555555555555 000000000000000000000000 22222 111 1 5555555555555 1 222222 444444444 11111
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 4 22 9999999 3 3 0000000 4 444 1 3 1 2 999 6 5555 6 1111111111111111111111111111 6 888888888888888888888888 0 2 0 0 0 55555 777 0 5555555555555 1 0 222222 222222222 33333 1 1 1 5 0 3
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . .. ....... . . ....... . ... . . . . ... . .... . ............................ . ........................ . . . . . ..... ... . ............. . . ...... ......... ..... . . . . . .
lowQualScore : 7 22 44444 22 1 22 1 000 8 22 4 3 3 3 9 00 5555555 3 3 8888888 0 333 8 7 3 2 888 7 0000 3 5555555555555555555555555555 5 888888888888888888888888 2 0 2 2 2 00000 555 0 0000000000000 2 0 555555 888888888 00000 2 0 4 6 6 2
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCATATTTTCAACTNAATATA-------TA-A-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCACGCATATGTA-----------------TATATG-TACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTTTC-TT--TT--TCGTT--------GTTT-ACT-GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTANATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCATATTTTCAACTNGATATA-------TA-A-TAT-------ATTTAAAGGCAATACGTTCATATA-AGCAAATGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAACAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCACGCATATGTA-----------------TGTATGCTACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTTTC-TT--TT--TCGTT--------GTTT-ATT-GTTATATCAATATNTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCATATTTTCAATTAAATATT-------TA-A-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCACGCATCT-TA-----------------T-TATG-TACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT-TAA-------------TTTATCATTAATA--TCATC--------ATTT-ACT-ATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTATATTTTTAACTAGATATA-------TA-A-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTATATTTTTAACTAGATATA-------TA-A-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTGTATTATTAACTTAATATA-------TA-A-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGATG------TA-----AACTATTTATA-------TATA-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|15 : CAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACAtaatatataatatatttaaaagcaaaactttcat
gi|17 : TATATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCACATCTTCAATCTAATATAATTCTAATA-AATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTATAATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT-TGT-------------TTTTTC-TT--TTACTTGTT---------TTT-CTTAGTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgat-A-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCACGCATATGTA-----------------TA----CTACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTCTT-TC--AT--TTGTT--------GTTC-ATA-GTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCATATTTTCAACTTAATACA-------CA-A-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCACGCATATATA-----------------TA-AT---ACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTGTTTTCTTTCATTTTTTTT-TT--TT--TCATTTTTTCATAGTTTAACT-GTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCAATTTTTCAACTTAAGATA-------TA-A-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCTCATT---AATTTAATATAATTT---TA-A-TAT-------ATTTTTAGGCAATAAGTTCATACA--GCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTATATTTT-AACTAGATAAA-------TA-A-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTATATTTTTAACTAGATATA-------TA-C-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 55555 22222 111 1 5555555555555 1 11 1 4444444444 1 11
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 11111 0 2 0 0 0 55555 777 0 5555555555555 1 0 33 0 0000000000 0 33 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . ..... . . . . . ..... ... . ............. . . .. . .......... . .. . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 00000 2 0 2 2 2 00000 555 0 0000000000000 2 0 88 5 2222222222 0 88 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTATAC--ATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTTTC-TT--TTTCGTC--------G-TTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTATATATGTACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTTTC-TT--TTTCGTT--------G-TTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TAT-TATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT-TAA-------------TTTATCATTAATATCATC--------A-TTT-ACT--ATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTATA---ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT-TGT-------------TTTTTC-TT--TTAC-TT--------GTTTT-TCTTAGTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTATAC---TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT-TGT-------------TTTCTT-TC--ATTTGTT--------G-TTC-ATA--GTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATATA---ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTGTTTTCTTTCATTTTTTTT-TT--TTTCATTTTTTCATAG-TTTAACT--GTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 1 22 22222 22222222 11 8888888888888888888888888 11 1 11
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 0 66 0 2 0 0 0 55555 00000000 33 1 8888888888888888888888888 33 0 33 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . . .. . . . . . ..... ........ .. . ......................... .. . .. . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 0 00 2 0 2 2 2 00000 00000000 88 2 2222222222222222222222222 00 0 88 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTT--TTTCA----------------TT--TT--TCGTCGTTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTT--TTTC-----------------TT--TT--TCGTCGTTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TATTATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT---TAATT--TATCA----------------TTAATA--TCATCATTT-ACT--ATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTA-TA-ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT---TGTTT--TTTC-----------------TT--TTACTTGT--TTT-TCTTAGTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTA-TAC-TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTT--TCTT-----------------TC--AT--TTGTTGTTC-ATA--GTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATA-TA-ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTGTTTTCTTTCATTTTTTTTTTTTTCATTT--TT--TCATAGTTTAACT--GTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 1 22 22222 22222222 22 7777777777777777777777777 11 1 11
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 0 66 0 2 0 0 0 55555 00000000 77 9999999999999999999999999 0 33 0 33 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . . .. . . . . . ..... ........ .. ......................... . .. . .. . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 0 00 2 0 2 2 2 00000 00000000 55 8888888888888888888888888 2 00 0 88 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTTTCTTTCA----------------TT--TT--TCGTCGTTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTT--TTTCA----------------TT--TT--TCGTCGTTT-ACT--GTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TATTATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT---TAATT--TATCA----------------TTAATA--TCATCATTT-ACT--ATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTA-TA-ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT---TGTTT--TTTC-----------------TT--TTACTTGT--TTT-TCTTAGTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTA-TAC-TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT---TGTTTTCTTTCA----------------TT--T-----GTTGTTC-ATA--GTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATA-TA-ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTGTTTTCTTTCATTTTTTTTTTTTTCATTT--TT--TCATAGTTTAACT--GTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 1 22 22222 22222222 11 77777777777777777777777777 1111
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 0 66 0 2 0 0 0 55555 00000000 33 3 88888888888888888888888888 66 1111 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . . .. . . . . . ..... ........ .. . .......................... .. .... . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 0 00 2 0 2 2 2 00000 00000000 88 2 00000000000000000000000000 88 0000 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TATTATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT---TA--ATTTA--TCA----------------TTAAT-ATCATCATTT-ACTATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTA-TA-ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT---TGTTTTTTCTTTTA----------------CT--TGTTTTTC--TT-A--GTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTA-TAC-TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T----GTTGTTC-ATAGTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATA-TA-ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTG--TTTTCTTTCATTTTTTTTTTTTTCATTT--T-TTCATAGTTTAACTGTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 1 22 22222 22222222 11 77777777777777777777777777 1111
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 0 66 0 2 0 0 0 55555 00000000 33 3 88888888888888888888888888 66 1111 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . . .. . . . . . ..... ........ .. . .......................... .. .... . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 0 00 2 0 2 2 2 00000 00000000 88 2 00000000000000000000000000 88 0000 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TATTATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT---TA--ATTTA--TCA----------------TTAAT-ATCATCATTT-ACTATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTA-TA-ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT---TGTTTTTTCTTTTA----------------CT--TGTTTTTC--TT-A--GTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTA-TAC-TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T----GTTGTTC-ATAGTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATA-TA-ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTG--TTTTCTTTCATTTTTTTTTTTTTCATTT--T-TTCATAGTTTAACTGTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
blockSeqs : G GT GTAAG CG T GT A CTC C GT A T A T C T A ATTCTAA A TACATGC A C G T G A A TAG C GATA T GCTTTATCA CACATATGTATAATACCTACA G . A A . ACAGTGTG TT T TTTTTTTTTTTTTCATTTTTTCA TG AACT T A A C
blockSeqs : G GT TAAA . T . . GT A GT A . . . . T A ATTT . . T C G A G C A TAG . GATA T GCTCTATCA . G . C G . GT . T CTTGTTTT AG ATA T T A A
blockSeqs : A . CAGA . T . . CT C . A . . . . T T . . . T C T T A A T TA . TTCA T GCTAGATCG . A . A A . GT . T TTTG C A C G A G
blockSeqs : A . AAGG . C . . CC C . G . . . . C T . . . A C G C G C A A . GATA C G . G
blockSeqs : G . CTGA . A . . CC C . A . . . . C T . . . A . . . . A G A . T .
blockSeqs : C . TAAA . T . . T A . G . . . . C T . . . T .
blockSeqs : G . TA . A . . T C . A . . . . T T . . .
blockSeqs : . . CA . A . . T C . G . . . . . T . . .
blockSeqs : . . G . T . . T T . G . . . . . A . . .
blockSeqs : . . . T . . T . . A . . . . . A . . .
blockSeqs : . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : CT* GATA
originalCons : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
finalCons : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG
Alignments
lowQualScore : 22222 111 1111111 1111111 111 1111 5555555555555555555555555555 888888888888888888888 1 22 22222 22222222 11 77777777777777777777777777 1111
lowQualScore : 5 99 77777 44 2 44 3 777 1 99 1 3 3 3 3 4 2 7777777 3 0000000 1 6 5 7 3 1 2 999 6 5555 4 1111111111111111111111111111 555555555555555555555 6 0 66 0 2 0 0 0 55555 00000000 33 3 88888888888888888888888888 66 1111 1 1 5 0 1
lowQualScore : . .. ..... .. . .. . ... . .. . . . . . . . ....... . ....... . . . . . . . ... . .... . ............................ ..................... . . .. . . . . . ..... ........ .. . .......................... .. .... . . . . .
lowQualScore : 7 22 44444 22 0 22 1 000 8 22 4 3 3 3 6 9 2 9999999 1 0000000 0 7 2 5 7 3 2 888 7 0000 2 5555555555555555555555555555 000000000000000000000 5 0 00 2 0 2 2 2 00000 00000000 88 2 00000000000000000000000000 88 0000 2 4 6 6 0
consensus : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
Reference ( family-418 ) : CATTTTGTAAGCAGATAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATTATATT--TTC-TTGTCTCCCCT-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGCA-TATTTTCAACTNAATATA-------TAA-TAT-------ATTTAAAGGCAANACGTTCATATACAGCAANTGTTTCGGTGGTATATAAATATCTATTTGAGAAGGCGTATA-AAA-TATATGATATTATAATAATTTGTTTCGTTACAATTTTATCA---------AGTTGAACAAAGCA---------------------CGCATATGTA-TACATACCTATGCGTGGTTTGTTCAACTCGACTAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T-TTCGTCGTTT-ACTGTTATATCAATATCTATGCGTGTCTTTAATAAAATTATGAACAGNATCCACA
gi|1 : CATTTTATAAGCAGAAAAAAGAAAAAAA--AAA-CAGGAAG--TATATGATGAACTT--TTC-TTGTTTCTCCT-TATGACAGGC--ATTCACAGATATTATA-ACTT-TGTATGT-GGACAGGACACACTAGCACACAAATGGATGCA-TATTTTCAATTAAATATT-------TAA-TAT-------ATTTCAAGGCAAAACGTTCATATG-AATAAATGT---GGTGATATATAAATATCCATTTGAGTAGGCGTA-A-AAA-TATAT--T-TCATAACAATTTGTTTTATTATAATTTTATTAGAATTTACTAGTTGGACTAAGCA---------------------CGCATCT-TATTATGTACCTTTACATAGTTTATTCAGTTCTACCAACCAAATTGTAACTATTTGTATATATTT---AT---TA--ATTTA--TCA----------------TTAAT-ATCATCATTT-ACTATTATATCAAAATCTATGTGTATCTTCCATAACATTATGGACAGCATCCACA
gi|10 : TGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--ATC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGGCATACTAGCACACAAATGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTTAA
gi|11 : AGCAGATAAAAGAAAAAAT--AG--TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGAAAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGGCAGGACATACTAGCACACAAGTGGGTGTA-TATTTTTAACTAGATATA-------TAA-TAT-------ATTT
gi|12 : ttCATTTTATAAGCAGATAAAA-----------AA-TA-------TATATGATTATATT--T----------CCGT-TATGACAGGC--ATTCTCAGATATCATA-ACTT-TGTGTTT-GGACAGGACATACTAGCACACAAATGGGTGTG-TATTATTAACTTAATATA-------TAA-TAT-------ATTTA
gi|13 : AA-CAGAGAC--CATATGTGTACATTGTTTG-TCGTCTGCC----------GGC--GTTCTCAGATATTGTG-ACTT-TGTGTTT-AGACAGGACATACAAGCATACAGAT--GTAAACTATTT--------ATATA-------T-A-TAT-------AT
gi|14 : ttatTTTTATAAGCAGATAAAAAAAAGAAG--AAA----GAAG--TATATGATTAAATT--TTTATTGTCTTCCCT-Ta
gi|14 : TTAATATA-------TAA-TAT-------ATTTAAAAGCAAAACTTTCATtaatatataatatatttaaaagcaaaactttcat
gi|15 : ttttataagcagataaaaaaaagaagaaagaagtatatgattaaatttttattgtcttccctCAGATAAAAAAAGAAAA--A------------TATATGATTATATT--TTC-TTGTTTCCC-T-TATGACAGGT--ATTCTCAGATATCATA-ACTT-TGTGTTT-GAACA
gi|17 : TATGCGTATCTTTAATAGAATTATTAACAGCATCCACAaca
gi|2 : tataaaaagtaA--AAA-AAGGAAG--TATACGA---------------GTCTCCTCTCTGCAACAGGCGTATTCTCAGATCGTGTA-ATTTATATGTT--AGACAGGACACACTAGTACACAGATGCGTGCA-CATCTTCAATCTAATATAATTCTAATAAATAT-------ATTTAAAGGCAATACGTTCATATACAGCTA-TGATTCGGTG---------------TTTGAGAACGCATATAGAAA-TATATGATATTATAATAATTTG----------GCTTTATCA---------AGTTGAACAAAGCACACATATGTATAATACCTACACGCATATGTA-TA-ATACCTATGCATGGCTTGTTCAACTCAACTAGTCAAACCGTAACTATTTAT-----TTT---GT---TGTTTTTTCTTTTA----------------CT--TGTTTTTC--TT-A--GTTATATCAATATATATGCGTTTCTTT-ATAAAATTATGAACATAATGCACA
gi|3 : gcattatatacgctgatA-TAT-------ATTTAAAGGCAATATGTTCATATACAGCAATTGTTTCAGTGGTATATAACTATCTATTTGAGAAGGCATATAGAAA-TATATGATATTATAATAATTTGGCTC----------TATCA---------AGTTGAAGAAAGCA---------------------CGCATATGTA-TAC-TACCTATCTGTGGTTTGTTCAACTCGAATAGTCAAACCGTAACTATTTGT-----TTT---GT---TG--TTTTCTTTCA----------------TT--T----GTTGTTC-ATAGTTATAACAATATCTATGCGTGTCTTTAATAAAATTATGAACAGGATCCACA
gi|4 : agATGTTATAAGCAGA-----GAAAAAAA--GAAGTAAGAAG--TATATGATTAACTT--TTC-TTGTCTCCCCC-TATGAAATGC--ATTCTCAGATATCATA-ACTT-TGCATTT-GGACAGGACACACCAGCACACAAATGGATGCA-TATTTTCAACTTAATACA-------CAA-TAC-------ATTTAAAGGCAAAACGTTCATATA-A--AAATGATTTGGTAGTATATAAATCTCCATTTAAGTAGACTTG-A-AAA-AATATTTCATTACAA-------TTTCATTACAAT
gi|5 : ATATATATTTGAGAAGACATATA-AAACTATATGATATTGTTATAATTTA----GCTAGA------TCG---------AGTTGAACAAAGCA---------------------CGCATATATA-TA-ATACCTATGCATGATTTCTTCAACTCGACTATTCAAACCATAATTATCTGT-----TTTACAGTGTGTG--TTTTCTTTCATTTTTTTTTTTTTCATTT--T-TTCATAGTTTAACTGTTAGATCAACATCAATGCGTGTTGTTAAAAACATTATGAACAGGCTCCACg
gi|6 : tAAACAGAGAAA--AAA-CA---AG--TATATCGTTAACTT--TTC-TTGTTTCCACC-TATGA----C--ATT------------------------TT-GGACAGGACATACTAGCACACCAATAGGTGCA-ATTTTTCAACTTAAGATA-------TAA-CATTACATGCATGTAAAGACAAAACGTTCATATACATCAATTGTTTCGGTTATATATCAATCTCTATTTGAGAAGGTGTA-A-AAA-GATAT--T-TTATTACAATTTATTTTGTTACAATT
gi|7 : ttatAGAAA--AAA-CTGAAAGCGTATTTGAGTGTATT--CTT-TCA----------ATGACATGCGTATTCTCAGAT--CGTATAATT-TATATTTTAAACAGGACA--CTAGCTCAGAGATGTGTGCT-CATT---AATTTAATATAATTT---TAA-TAT-------ATTTTTAGGCAATAAGTTCATA--CAGCAACTGTTTCGCTGGTATGTATATATCTAT
gi|8 : aaggttatattagctgATTTTGTAAGCAGATAAAA--AAAAAA--TAG-TAAAAAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGACAGGC--ATTCTCAGATATCGTA-ACTT-GGTGTTT-GGACAGGACATACTAGCACACAAGTGGGTGTA-TATTTT-AACTAGATAAA-------TAA-TAT--------TTT
gi|9 : aagATTTTGTAAGCAGATAAAAGAAAAATAGTAAA-----AAG--TATATGATTATATT--TTC-TTGTCTCCC-T-TATGATAGGC--ATTCTCAGATATCATA-ACTT-TGTACTT-GGACAGGACATACTAGCACACAAGTGGGTTTA-TATTTTTAACTAGATATA-------TAC-TAT-------ATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTCAGGTCTTTAACTGATATAGAACTGGAAGCCATACATGCACATCTATGTATATTTATATATATATACATGTG