lowQualScore : 111111111111111111111 11111111111111111111111111111111 11111111111111111111111
lowQualScore : 111 1 1 11111111 111111111 333 1 111111 1 1 444444444444444444444 11111111111 2 11 777777 1 1 1 1 1 33333333333333333333333333333333 1 11111111 1 11 2222 11 1 22 1 1 4444444 22 1 1 55555555555555555555555 2222 1 1 2 222
lowQualScore : 6 7 7777 000 3 2 9 1 88 5 2 33 2 4 4 5 2 444 2 7 444 2 666 77 1 22222222 2 3 66 3 66 8888888 9999999 000000000 8888888 1 2 2 2 5 000 44 44 3 2 44 44 3 4 0 7 5 2 333333 3 6666 3 3 55 7 6 3 5 222222222222222222222 88888888888 3 7 5 5 8 0 99 3 8888 6 8 6 77 2 888888 0 0 0 5 5 2 5 2 2 77777777777777777777777777777777 4 2 3 2 4 6 2 3 99999999 2 88 3333 6 66 6 6 1 44 5 0 88 6 33 7 7 3333333 11 2 6 6 7 9 7 6 11111111111111111111111 8888 6 6 0 6 6 88 5 3 6 1 2 888
lowQualScore : . . .... ... . . . . .. . . .. . . . . . ... . . ... . ... .. . ........ . . .. . .. ....... ....... ......... ....... . . . . . ... .. .. . . .. .. . . . . . . ...... . .... . . .. . . . . ..................... ........... . . . . . . .. . .... . . . .. . ...... . . . . . . . . . ................................ . . . . . . . . ........ . .. .... . .. . . . .. . . .. . .. . . ....... .. . . . . . . . ....................... .... . . . . . .. . . . . . ...
lowQualScore : 7 0 7777 000 6 8 6 5 66 0 9 99 9 9 7 7 6 777 7 9 777 7 444 33 7 99999999 9 6 00 8 66 7777777 4444444 777777777 1111111 5 7 9 9 7 777 22 55 1 1 22 22 1 8 5 4 5 1 888888 1 5555 3 3 00 0 0 9 0 333333333333333333333 66666666666 9 6 7 0 5 2 22 5 9999 0 6 0 55 5 000000 2 8 5 0 0 5 0 5 5 66666666666666666666666666666666 5 2 2 2 7 0 0 7 33333333 0 33 0000 0 77 0 0 0 33 0 2 55 0 00 0 0 8888888 00 2 0 0 0 0 0 0 77777777777777777777777 3333 0 0 7 0 0 33 0 3 7 0 5 000
consensus : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TG--TT-CGGGCGAACGATTANGTGTCAAA-TAAAACCA---ATTG-TAACTGGA---TCG-TAC--GCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GAC--G--TTGAA-AAAAA--TTG--AA-ATTTATTCAGTTTTCTT--T-N-TT-TTTGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCGACGAATGAGGTTGCTAG----------GGTTGTTGGCAGTT-----C-----TAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAAT-CGTTTCNAAACTGCCACTG------CTGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAGGGTGGTNTACTTGGACNTCGTNCTTACGTTGGC----TTATGACGCGATGCCACCGCGTAAATCGTGTTAATTGGGCACGTACACACNATCGCTGGGTAAGGCAACAATGNAATAGCGCTCTCTTCTCCGACGAG--TCGAG-ATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGNGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGCATG-----GTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAACGCCAATATCACTCTGTTTCAACAGGATAATGC-ACAAGCCA-TAC----AGC----TAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGTCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGGAC-AAGCGTGTTAGACGTCGCNCTATTCCACCGCCG
Reference ( gi|2 ) : AAA-AAAAGAAACTTCCAATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAATATGTCAAATGGTCTACCTA-TG--TT-CGGGCGAATGATTATGTGTCAAA-TAAAAGCA---ATTG-TAATTGGA---TTG-TAT--GCA--TTACACA-----AAGAAGA-AAATGTTTATGTCGATTTCCTCGTGCATGCACAGACCAG-------CATGATC------TGT---------GTTTATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA---G--TTGGA-AAAAA--TTG--AA-ATCTATCCATTTTTTTT--T-C-TT-TTTGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTTTTGCAATGAATGATGTTGCTAG----------G----------GTT-----C-----TAGCCATACTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGACGTATGGAAGATTTACCACGTAGTGGAC--GTCTGCGCATCACGACGCATGGGCAGGACCGCTATATCATGAACA-CCACCCACACAAT-GGTTTCCAAACTGCCACTGCCACTCCTGCTAACACCCCTGGTACACATAAAAACCAAATATCTGACCAAACTGTACGCAATCTTCTGCCCGAGGTTGGTCTACGTGGACGTCGTCCTTATGTTGGCTGTGTTATGACGCGACGTCACTGCATAAATCATGTTAATTGGGCACATACACACTATCACTGGGTAACGCAACAATGGAATAGCGTTCTTTTCTCCGACCAG--TCGAT-ATTTTTCATTCATTGAAGTGATGGCAGAGTTTGAGTATACCGTAAAAGAAATGAACAATATGCCGACTGCTGTGTACTTGAACCAGATCGTTTTGAGGATGGTAGTTCCGTCATGGTCAGGGCAGGCAATGCGCACT-----GTTATTGCACATGTCTCATCATGATTGATGGGAATTTGAATGCCCAACGCTACCGAAATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATTATGCTAATTTCACTCTGTTTCAATAGGA-------------CA-TAC----AGC----TAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCACTTATTGATGATTGGCCTGCCAAAAGCCCAGATCTGAATTCCATTGAACACATGTGGGATAATTTTGAC-AA-CATGTTAGACGTCGCCCTATTCTGACGTCG
gi|3 : AAA-AAAAGAAACTTACGATTTCTATACATAT----CT---T-TCAACTGTTATAAAAAGAAATCG-------------------TA-TG--TT-CGGGCGA-CGGTTATGTATCAAA-TAAAACCA---ATTG-TAACTGGA---TTG-TAT--GCA--TTACACA-----AAAAAGA-AAACGTTCAAGTCAATTTCCTCGTGCATGCACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GAC--G--TT-GA-AAAAA--CTG--AA-ATTTATTCAGTTTTCTT--T-C-TT-TTTGA----TATGCCTA-GAAATCCACCGAAT-TAACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGAGACGAATGAGGTTGCTAG----------GGTTGTTGGCAGTT-----C-----TAGCCGTTCTATTCGAAACATT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTCACCACATAGTTGAC--GTCTGGGCGTCATGACACATGGGCGAGACCGCTATATCATGAACACCCACCTACGCAAT-CGTTTCGAAACTGCCACTG------CTGCTAATAACCCTGGTACACATAGCAACTAAATATCTGACCAAACTGTTTACAATCCTCTGTGCGAGGGTGGTATACTTGGACTTCATCCTTACGTTGGC----------CACG-----------TAAATCGTCTTAATTGGGCACATATACACCATCGCTGGGTAAGGCAACAATGAAATAGCATTCTCTTCTCCAACGAG--TC-ATGATTTTCCATTCATCAAAGTGATGACAGGGTTCGAGTATACTGTAAAAGAAATGAATGGTATGCCGACTGCTGTGTACTTAAATGAGATCGTTTTGGTGGTGGAGGTTCCATCAAGGTCTGGGCAGGCTTTGCGCATG-----GTTTTTGCACACCTCTCATCATGACCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTC
gi|5 : tacactgaacAAA-AAATGAAATTTCCGATTTCTATACATAT----CT---T-TTTACTGTTGTAAAAAGAAATCAA--------ATTACCTACGTA-TG--TT-TGGGCGAACGATTAGATGTCCAA-TAAAACCT---AATG-TAACTGGA---GTG-TAC--GCA--TTACACACA---AAAAAAACAAACGTTTACGTCGATTTTCTAGTGCATGCGCGGACCAG-------CATGATC------CGT---------GTTTATAAAATCAA-------ACCTTTCAGTCTGATGTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GAC--G--TTGAA-AAACA--TTG--AA-ATTGATTCAATTTTCTTAAT---TT-TTTGA----TATGCTTA-GAATTCCACCAAAT-TTACG--TGAACGTGTCATCGACATGCTTAATGCTGGTATTGCGACAAATGAGGTTGCTAG----------GGTTGTTGACAGTT-----C-----TAGCCGTGCTATTCGAAACCTT-AGACAACGTTTTCAAGCAA-CATGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGT-TGTCACGACGCATGGGCAAGACTGCTATATCATGAACACCCACCTACACTAT-CGTTTC
gi|7 : actgaacAAA-TAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTCACTGTTATAAAAAGGAATCAATATGTCAAATAGCCTACATA-TG--TT-CAGGCGAACTATTATGTGTCAAA-TAAAACCA---ATTG-TAACTAGA---TTG-TAC--GCA--TTACACA--------AAAA-AAACATTTATGTCGTTTTCCTCCTGCATGCACTGACCAG-------CATGATC------CGT---------GTATATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATTAGAA-AA-A-GAC--G--TTGAA-AAAAA--ATG--AA-ATTTATTCAGTTTTCTT--T-C-TC-TTTGA----TATGCATA-GAATTCCACCAA-------G--TGAACCTGCCATTGGCATGCTTAATGCTGGTATTGCGATGAATAAGGTTGCAAG----------G----------GTTGTTGGCAGTTATAGCCATGCTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTTACTAAGTAG
gi|16 : tactgaacAAATAAAAGAACCTTCCGATTTTTATACATAT----CT---T-TATACTGTTATAAAAAGAAACCAACATGTCAAATTGCCTATATA-TG--TT-CGGCCGAACGATTATGTGACAAAATAAAACCA---ATTG-TAACTGGA---TTG-TAC--GCA--TTACACACACAAAAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGTACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACCTTTCAGTCTAATTTTATAGACTTTGTTG-TCAATAAG
gi|11 : ctgaacaAAA-AAAAGAAACATATGATGTCCATACAT-T----TTAAAT-TTTAATGTTTTAAAAAGAAATAAACATGTGAAATGACTTGCATA-GT--TT-TGGGTGAACAATTAAGTGTCAGA-TAAATTCACTGATTA-TAA----A---TAG-CATGAGCACTTTAGACA-----AAg
gi|14 : ctaaacAA-ACAAGAAA-TTCTCATTTGCACATATAT----AG---T-TTTACTGTTATAAACAGATGTACACATGTCAAATG-------TA-GT--TT-CGAGCGAACGATTAATTGTCATA-TATAAACA---ATTG-AAAGTAGC---TCG-TGA--ACA--TTAGACA-----AAAAAGA-CAAAGCGAAAATCGAATTC------AATACGCA----AG-------TATAA--------CAT---------GTT-----AATTAT-------ACC---------AATTT-------CTTATTT-TCAATGAGAA-AA-A-GAC--G--TTGAA-AATCA--TTC--AA-ATTTGTTCAGTTTTTCC--T-A-TA-AAAAA----CATGCCTG-AAATTTCA-CATAT-ATAGA--TGAACGTGCCAattgataatttgaaaattgatgtgcacattggacaaaataaagtgaatgttgattttggaggagtataattattatattctgtgtttatccaatcaaacttttggtctgattttatagacttcattgtcaataaaaacaaagatgttgaaagtcattgaactttgtcagttttccttgtttttgat
gi|17 : tactgaaatAACGAACCTTCCGATTTCCATGCATAT----GT---T-TTTAATGTTATCAAAAGAA
gi|10 : tactgaaaaacacgTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAATGAAATTAACATGTCAAATGGCCTACATA-TG--TT-CGGGCGAACGATTATGTGTCAAA-TAAAACCA---ATTG-TAACTGGA---TTG-TAC--GCA--TTACACA-----AAAAAGA-AAACGTTTATGTCGATTTCCTCGTGCATGCACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACATTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GAC--G--TCGGA-AAAAA--TTG--AA-ATTTATTCAGTTTTCTT--T-C-TT-TTTGA----TATGCCTA-GAATTCCATCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATCGCgaaaaaaatgttttccgccagatcaaaattctgtcttatatattgttttgacattaagaaaaaagacgttgtaaaacattgaaactgttcagtttttatattttttaatatgcctaacattcctcgaatatcacgcatggac
gi|6 : CGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TA--TT-CGGAAAAACGATTATGTGTCAAA-TAAAACCA---ATTG-TAACTGGA---TTG-TAC--GCA--TTACACA-----AAAAAGA-AAACATTAACATTAATTTCCTCCTGCAAGCATGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACCTTTCTGTCTGATTTTATAGACTTTGTTG-CCAAAAAGAA-AA-A-GA---AATTT-----------TTG--AA-ATTTATTCAGTTTTCTT--T-CTTT-TTTGA----TATGCCTA-GGATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGTTGGTACTGCGACGAATGTGGTTGCTAG----------GGTTTTTGGTAGTT-----C-----TAGCCGTGCTATCCAAAACCTTAAGACAACACTTTCAAGCAA-CAGGACGTACTGAAGATTTACCATGTAGTGGAC--TTCCGGGCGTCACAACGCATGGGCAAGACCGCTAGATCATGAACA-CCgtcac
gi|15 : taATCTTTATACATATAGAGCTA--TGTTTAATGTTTTAAAAAGAAAT--ATACATGAAG--------CTA-TG-------GGCGAACGATTCAGTGCCAGA-TAAAACCA---ATTG-TAACCAG-----CA-CGT--GCA--TTAGATA-----ACATAGA-CACCGTGAAAGTCGATTTTCACGTGCATACACGTACCAG-------TATGTTC------TAT---------GTTT-----ATCAA-------AC----CAGTCTGGTTTTATAGACTTTA-CG-T------GAA-AC-A-AT---A--TTAG----AAT--TTGTTAG-ATTT-CCCA--------------GT-TTTGA----TATGCCTATTTTTTTCACCAAAT-GTGCG--TGCATGTGcct
gi|12 : tTACATAT----AT---T-T--AATGTTATAAAAAGAAATAAA------AGATGACCTAC--A-TGGTTT-CGGTCGCACAATAA-GTCGCAGT-TTAAACTA---ATTA-TAACTAGC---TCA-TGC--ACA--TTAGGCA-----GA--------ATG-----GACAA------CGTGCATGCACCGACAAG-------TATGTTC------TGTCTGTTTCTAGTTTATT---TCAGTCTGTTTAACTTTCAG-CTTATTGTATAGACTTCATTGGTCAATAAGAA-AATA-TAC--G--TGGGA-AAAAAACTTG--GATATTTGTTAATTTTTTCC--TAG-TG-TTTAATACGTATGTCTA-AAATTTCAGAAAAT-ATAC
gi|1 : GTTATAAAAATAAATCAACATGCCAAATGGCCTTCATA-TA--TT-CGGGCGAACGATTAC-TGTTAAA-TAAAACCA---ATTG-TAACTGGA---GTG-TAC--GCA--TTACACA-----AAAAAGA-AAACATTTACGTCGATTTCCTTGTGTATGCACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------TCCTTTCAGTCTGATTTTATAGACTTTGTCG-TCAATAAGAA-AA-A-GAT--G--TTGAA-ACAAA--TTG--AA-ATTTATTCAATTTTCTT--T-G-TT-TTTGA----TATGCTTA-GAATTGCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTATTGATGGTATTGCGACGAATAAGGTTGCTAG----------GGTTTTTGGCAGTT-----C-----TAGCCGTGCTATTCGAAACCTT-AGGCAGCGTTTCCAAGCAA-CAGGACGTAAGGAAAAAATACAACGTAAGGAAC--GTCCGGGTGTCACGCAGCACCGGCAAGACCGCTATATCATGAACACCCACCTACGCAAT-CGTTTCCAAACTGCCACTG------CTGCTAACACCCCTGGTACACATAGCAACCAAATATCTGCCTAAACTGAACGCAATcgaagaaaaaagaaacgtccgct
gi|4 : AACATGTCAAATGGCCTATATA-TG--TT-CAGGCGAACGATTATGTGTCAAA-TAAAACCA---ATTG-TAACTGGA---TTG-TAC--GCA--TTACACA-----AAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGCACGGACCAG-------CATGATC------CGT---------GTTTATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACATTGTTG-TCAATAAGAA-AA-A-AAAACG--TTAAA-AAAAA---TG--AA-ATTTATTCAATTGTCTT--T-C-TT-TTTGA----TATGCCTA-TAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCGACGAATGAGGTTGCTAGAGTTGTTGGCA----------GTT-----C-----TAGCCGTGCTATTCAAAACCTT-AGGCAGCGTTTGCAAGCAA-CAGGACGT-----------------------AC--ATCCGCGCGTCACGACGCATGGGTTAGACCGCTATATCATGAACACCCACCTACACAAT-CGTTTCAAAACTGCTACTGCCACTGCTGCTAACACCCCTGGTACACATAACAACCGAATATCTGGTCAAGCTGTACGCAATCGTCTGCGCGAGGGTGGTCTACTTGGACGTCGTAC--------------TTATGACGCGACGTCACCGCGTAAATCGTGTTAACTGGGCACGTACACACAATTGCTGGGTAAGGCAACAATGGAATAGCGCTCTCTTTTCCGACGGG--TCGGG-ATTTTCCATTCATCGAAGTGATGGCAGGGTTCGTGTATACCGTAGAAGAAATTAACATTATGCCCACTGCTGTGCACTTGAACGAGATCATTTTGGGGGTGGCGGTTCCGTCATGCTCTAGGCAGGCATTGCGCATG-----GTTATTGCACACCTTTTGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATaccgcgtaaatcgtgttaattgggcacgtacacattatcgctggataatgcaacaatgcaacaatggaatagcgtcgagattttccattcatcaaagtgaatgcagggttcgagtataccgtagaagaaatgaacgttatgccgactgctgtgtacttgaacgagattgtttgggtggtggaggttccgtcatggtctgggcaggcattgcgtatcatatggttatcgcacacctctcaacgtgatcgatgggaatttgaatgcacaacgcaaccgagatgagattctagcgagacacgtcatcccactgttttaaattaatgcgaatatcactctgtttcaacatgataatgcaacaagccatacagctagagatactatgaatttcctcaggatgaataacattacatttattgatgactggtccggcaatagcccagatctaaatcccatcgaacacatgtgggataatttggactaacacaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|13 : ACATGTAAAATAATCTACAT--TG--TTTCGGACGAACATTTATGTGTCAAAATAAATGCA---GTTG-TAACTAGC---ACG-AGC--GGA--TTAGACA-----CAATAGA-CAACGTGGGTGCAGTTCTCCACGTGCTTGCACGTACCAGTACGTTACGTGATTTTGTTATGT---------GATAATGAAAT-AA-------ATATTTTCGTCTGATTGTA---------TTG-TAAAT--GAA-AA-ATAA---G--TTCAATAAACA--TTG--AA-TTTTGGTCAGTTTTTCT--A-G-TTATGTGA----TAT
gi|18 : atactgaacacaaaaagttatatgtttaaaacttaaagtacagTGGCCTACATAGTA--TT-TGGGGGAATGATTAAATGTCAGA-TAAAACCA---AATG-TAACTAAA---ATG-TGC--ACA--TTAGA-A-----AAACAGA-ATATGTGAAT-TCAATTTCCACGT----------ACTAG-------AATGTTC------TGT---------GTTTATCAAATCAA-------A-CTTTCAATTAGATTTTATAGACTTTATTA-TTAATATTAA-AG-A-GA---ataatagtaatatgcctaataatt
gi|11 : A---ATTGATAATTTGAAAATTGATGT--GCACATTGGACA-----AA--ATA-AAGTGA--ATGTTGATTT--TGGAGGA-GTATA-ATTAT-------TATATTC------TGT---------GTTTATCCAATCAA-------ACTTTT-GGTCTGATTTTATAGACTTCATTG-TCAATAAAAACAA-A-GAT--G--TTGAA-AGTCA--TTG--AA-CTTTGT-CAGTTTTCCT--T-G-TT-TTTGA----Ta
gi|22 : ctaaacaaaaaaagaaacatatgatgtccatacattttaaattttaatgttttaaaaagaaataaacatgtgaaatgacttgcatagttttgggtgaacaattaagtgtcagataaattcactgattataaatagcatgagcactttagacaaTTTACGTCGATTTCCTCCTGCATGCATAGTCCA--------CATGATC------AGT---------GTTAATGAAAGCAG-------A
gi|17 : acactannnnnnnnnnAGATCAA-------A------ATTCTG-TCTTATATATTGTTTTG-ACATTAAGAA-AA-AAGAC--G--TTGTA-AAACA--TTG--AA-A-CTGTTCAGTTTTTAT--A-T-TT-TTTAA----TATGCCTA-ACATTCC-TCGAATATCACGCATGGACattccaccaaattta
gi|19 : tactgaaaaacacgaacgaaccttccgatttccatgcatatgtttttaatgttatcaaaagaagaaaaaaatgttttccgcc-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTAGTATTGCGACGAATGAGGTTGCTAG----------GGTTGTTGGCAGTT-----C-----TAGCCGTGCTATTCGAATCCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAG
gi|21 : TTTCTAGCAAACCGGAAGTACTGAAGACCTGTCATACAGTGAACCCGTCCATCTGTCACAATTCGCTCCCAACACGGCTATATCATTAATA-CCAAATACAGGATCGGTTT
gi|20 : acgcaCGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAGT-CGTTTCCAAACTGCCACTG------TTGCTAACAACCCTGGTACACATAACAACCGAATATCCGAttacagtgacta
gi|25 : atgcttaatgctggtatACACCCCTGGTACACATAAAAAACGAATATCTG
gi|10 : TGACGCGATACCA--GCATTAAGCATGCCAAT--GGCACGTTCAC
gi|1 : ttccgatttctatacatatctttttactgttataaaatgaaattaacatgtcaaatggcctacatatgttcgggcgaacgattatgtgtcaaataaaaccaattgtaactggattgtacgcattacacaaaaaagaaaacgtttatgtcgatttcctcgtgcatgcacggaccagcatgatccgtgtttatgaaatcaaacatttcagtctgattttatagactttgttgtcaataagaaaaagacgtcggaaaaaattgaaatttattcagttttctttctttttgatatgcctagaattccatcaaatttacACGCAAT---ACCGCGTAAATCGTGTTAATTGGGCACGTACACATTATCGCTGGATAATGCAACAATGCAACAATG-----------GAATAGCGTCGAG-ATTTTCCATTCATCAAAGTGAATGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATTGTTTGGGTGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGTATCATATGGTTATCGCACACCTCTCAACGTGATCGATGGGAATTTGAATGCACAACGCAACCGAGATGAGATTCTAGCGAGACACGTCATCCCACTGTTTTAAATTAATGCGAATATCACTCTGTTTCAACATGATAATGCAACAAGCCA-TAC----AGC----TAGAGATACTATGAATTTCCTCAGGATGAATAACATTACATTTATTGATGACTGGTCCGGCAATAGCCCAGATCTAAATCCCATCGAACACATGTGGGATAATTTGGACTAA-CAc
gi|8 : gttataaaaataaatcaacatgccaaatggccttcatatattcgggcgaacgattactgttaaataaaaccaattgtaactggagtgtacgcattacacaaaaaagaaaacatttacgtcgatttccttgtgtatgcacggaccagcatgatccgtgtttatgaaatcaatcctttcagtctgattttatagactttgtcgtcaataagaaaaagatgttgaaacaaattgaaatttattcaattttctttgtttttgatatgcttagaattgcaccaaatttacgtgaacgtgccattggcatgcttattgatggtattgcgacgaataaggttgctagggtttttggcagttctagccgtgctattcgaaaccttaggcagcgtttccaagcaacaggacgtaaggaaaaaatacaacgtaaggaacgtccgggtgtcacgcagcaccggcaagaccgctatatcatgaacacccacctacgcaatcgtttccaaactgccactgctgctaacacccctggtacacatagcaaccaaatatctgcctaaactgaAGATCTTTTTTGGGGTGGATGTTCCGTCATGGCCTGGGCAGCCATTGAGCATG-----GTTATCGCACACCTCTCGTCGCGATCGATGGGAATTTGAATGCCAAACGCTACCGAGATGAGATTCTTGCGAGGCACGCCATTCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTAAACAGGATAATGTCACAAGCCA-TAC----AGC----TAGAGAAAATGTCACTTTCCTCAGGACGAATAACATTGCATTTATTGATGACGGGCCCGCCAAAAGCCCAGATCTGAATCCCATCACACACATGTGGGATAATTTGGTC-AAGCGTGTTAGACGTTGCCCTATTCCATCGTCGcaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|9 : aggAGATTCTTGCGAGGTACGTCATCGCAGTGTTTCAAAATAACGCCAATATCATTCTGTTTCAACAGGA-------------TAATGCCGCAAGCCATATAGAGATACTGTGAATTTCCTCAGAACGAAATACATTGCATTTATTGATGACTGATCCGCCAAAAGCCCCGATCTGAATCCCA-TGAACACATGTGGGGTAATTTGGAC-AAGCGTGTTAGACGTCACACTATTCCACCGCCGaacgtcaatgaactagcacaagcctgaaatcaggattggaacaacattccacaggccgaaatcgacacacttggcggttctatgcttcaatgatgccaggcagtcctcgatgcc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): TTGTAAAACACTGAAATTGGTCAGTTTTCCTAATTTTTGTTCCTCAAAATTTACCTGAACAT
Unaligned ( gi|24 ): AGTTCAATTTTCTTGATTTAGAAATTGTTTCCAAA
Alignments
lowQualScore : 111111111 111111111111 222222 222222 1 1 111 555555555555555555555555555 1 11 22222 2222 222222
lowQualScore : 5 7777 999 3 1 11 2 1 2 1 5 444 333 33 0 99999 44 1 2 0 000000000 2 222222222222 7777777 0 0 2 5 2 33 0 2 44 33 2 2 1 444 2 2 5555 2 2 44 55 2 5 4 77 1 1 333333 333333 0 0 2 1 44 1 777 777777777777777777777777777 1 2 1 0 0 0 33 0 1 3 1 1 00000 2 0 3 7777 2 6 888888 2 1 3 0
lowQualScore : . .... ... . . .. . . . . . ... ... .. . ..... .. . . . ......... . ............ ....... . . . . . .. . . .. .. . . . ... . . .... . . .. .. . . . .. . . ...... ...... . . . . .. . ... ........................... . . . . . . .. . . . . . ..... . . . .... . . ...... . . . .
lowQualScore : 7 1111 222 3 2 44 7 5 7 0 3 777 666 44 9 77777 99 9 2 9 000000000 5 888888888888 6666666 8 2 5 3 7 77 7 7 99 77 7 7 0 333 7 7 7777 9 9 22 55 5 0 4 99 0 0 000000 000000 8 0 5 0 22 0 555 222222222222222222222222222 0 5 0 5 2 2 88 8 2 5 0 0 00000 0 2 2 0000 5 5 888888 5 0 7 7
consensus : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-T-----ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATGGAATAGCGTTCTCTTCTCCGAC--GAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
Reference ( family-4113 ) : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA--CGTTGAA-AAAA-A--TTGAA-ATTTATTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCNAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTNTACTTGGACNTCGTNC---TTA-CGTTGGCT----TATGACGCGATGCCACCGCGTAAATCGTGTTAATTGGGCACGTACACACNATCGCTGGGTAAGGCAACAATGNAATAGCGCTCTCTTCTCCGAC--GAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGNGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAACGCCAATATCACTCTGTTTCAACAGGATAATG-C-ACAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGTCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCNCTATTCCACCGCCG
gi|1 : GTTATAAAAATAAATCAACATGCCAAATGGCCTTCATA-TATT-CGGGCGAACGATTAC-TGTTAAA-TAAA---ACCAATTGTAACTGGAGTGTACGCA--TTACACA-----AAAAAGA-AAACATTTACGTCGATTTCCTTGTGTATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------TCCTTTCAGTCTGATTTTATAGACTTTGTC-GTCAATAAGAA-AA-AGA--TGTTGAA-ACAA-A--TTGAA-ATTTATTCA-ATTTTCTTT-GTT-TT-TGA----TATGCTTA-GAATTGCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTATTGATGGTATTGCG--ACGAATAAGGTTGCTAGGGTTTTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAGCGTTTCCAAGCAA-CAGGACGTAAGGAAAAAATACAACGTAAGGAAC--GTCCGGGTGTCACGCAGCACCGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAGCAACCAAATATCTGCCTAAACTGAACGCAATA--CCGCGTAAATCGTG--TTAATTGGGCA-CGTACACATTATCGCTGGAT----AATGCAACAATGCAAC
gi|1 : ACGCAAT---ACCGCGTAAATCGTGTTAATTGGGCACGTACACATTATCGCTGGATAATGCAACAATGCAACAATG-----------GAATAGCGTCGAGATTTTCCATTCATCAAAGTGAATGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATTGTTTGGGTGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGTATCATATGGTTATCGCACACCTCTCAACGTGATCGATGGGAATTTGAATGCACAACGCAACCGAGATGAGATTCTAGCGAGACACGTCATCCCACTGTTTTAAATTAATGCGAATATCACTCTGTTTCAACATGATAATG-CAACAAGCCATACAGCTAGAGATACTATGAATTTCCTCAGGATGAATAACATTACATTTATTGATGACTGGTCCGGCAATAGCCCAGATCTAAATCCCATCGAACACATGTGGGATAATTTGGACTAACACAAGCGTaatggaatagcgtcgagattttccattcatcaaagtgaatgcagggttcgagtataccgtagaagaaatgaacgttatgccgactgctgtgtacttgaacgagattgtttgggtggtggaggttccgtcatggtctgggcaggcattgcgtatcatatggttatcgcacacctctcaacgtgatcgatgggaatttgaatgcacaacgcaaccgagatgagattctagcgagacacgtcatcccactgttttaaattaatgcgaatatcactctgtttcaacatgataatgcaacaagccatacagctagagatactatgaatttcctcaggatgaataacattacatttattgatgactggtccggcaatagcccagatctaaatcccatcgaacacatgtgggataatttggactaacacaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|10 : gttataaaaataaatcaacatgccaaatggccttcatatattcgggcgaacgattactgttaaataaaaccaattgtaactggagtgtacgcattacacaaaaaagaaaacatttacgtcgatttccttgtgtatgcacggaccagcatgatccgtgtttatgaaatcaatcctttcagtctgattttatagactttgtcgtcaataagaaaaagatgttgaaacaaattgaaatttattcaattttctttgtttttgatatgcttagaattgcaccaaatttacgtgaacgtgccattggcatgcttattgatggtattgcgacgaataaggttgctagggtttttggcagttctagccgtgctattcgaaaccttaggcagcgtttccaagcaacaggacgtaaggaaaaaatacaacgtaaggaacgtccgggtgtcacgcagcaccggcaagaccgctatatcatgaacacccacctacgcaatcgtttccaaactgccactgctgctaacacccctggtacacatagcaaccaaatatctgcctaaactgaTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAATGAAATTAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTATGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACATTTCAGTCTGATTTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA--CGTCGGA-AAAA-A--TTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAATTCCATCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATCGCG--taattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|11 : AAA-AAAAGAAACATATGATGTCCATACAT-T----TTAAAT-TTTAATGTTTTAAAAAGAAATAAACATGTGAAATGACTTGCATA-GTTT-TGGGTGAACAATTAAGTGTCAGA-TAAATTCACTGATTATAAATAG--CATGAGCACTTTAGACA-----AAAtcac
gi|11 : ctaaacTTGAAAATTGAT-GTGCACA--TTGGACA-----AAATAAA-----GTGAATGTTGATTT--TGGAGGA-GTATA-ATTATTATATTCTGT---------G-TTT------------ATCCAATCAA-------ACTTTT-GGTCTGATTTTATAGACTTCATT-GTCAATAAAAACAA-AGA--TGTTGAA-AGTC-A--TTGAA-CTTTG-TCA-GTTTTCCTT-GTT-TT-TGA----Tttgataatttgaaaattgatgtgcacattggacaaaataaagtgaatgttgattttggaggagtataattattatattctgtgtttatccaatcaaacttttggtctgattttatagacttcattgtcaataaaaacaaagatgttgaaagtcattgaactttgtcagttttccttgtttttgat
gi|12 : ctaaacaaaaaaagaaacatatgatgtccatacattttaaattttaatgttttaaaaagaaataaacatgtgaaatgacttgcatagttttgggtgaacaattaagtgtcagataaattcactgattataaatagcatgagcactttagacaaaattgataatTACATAT----AT---T-T--AATGTTATAAAAAGAAATAAA------AGATGACCTACATG-GTTT-CGGTCGCACAA-TAAGTCGCAGT-TTAA---ACTAATTATAACTAGCTCATGCACA--TTAGGCA-----GAATGGA-CAA------------------CGTGCATGCACCGACAAGTATGTTCTGTCTGTTTCTAG-TTT------------ATT---TCAGTCTGTTTAACTTTCAG-CTTATTGTATAGACTTCATTGGTCAATAAGAA-AATATA--CGTGGGA-AAAA-AACTTGGATATTTGTTAATTTTTTCCTA-GTG-TT-TAATACGTATGTCTA-AAATTTCAGAAAAT-ATAC
gi|13 : ACATGTAAAATAATCTACAT--TGTTTCGGACGAACATTTATGTGTCAAAATAAA---TGCAGTTGTAACTAGCACGAGCGGA--TTAGACA-----CAATAGA-CAACGTGGGTGCAGTTCTCCACGTGCTTGCACGTACCAGTACGTTACGT---------GATTTTGTTATGTGATAATGAAAT-AA-------ATATTTTCGTCTGATTGTA---------TT-GTAAAT--GAA-AA-ATA--AGTTCAATAAAC-A--TTGAA-TTTTGGTCA-GTTTTTCTA-GTTATG-TGA----TATcgaagaaaaaagaaacgtccgct
gi|14 : atactgaacacaaaaagttatatgtttaaaacttaaagtacagAA-ACAAGAAA-TTCTCATTTGCACATATAT----AG---T-TTTACTGTTATAAACAGATGTACACATGTCAAATG-------TA-GTTT-CGAGCGAACGATTAATTGTCATA-TATA---AACAATTGAAAGTAGCTCGTGAACA--TTAGACA-----AAAAAGA-CAAAGCGAAAATCGAATTC------AAT--ACG--CAAGTATAA--CAT---------G-TT-----------------AATTAT-------ACC---------AATTT-------CTTATT-TTCAATGAGAA-AA-AGA--CGTTGAA-AATC-A--TTCAA-ATTTGTTCA-GTTTTTCCT-ATA-AA-AAA----CATGCCTG-AAATTTCA-CATAT-ATAGA--TGAACGTGCCAataatagtaatatgcctaataatt
gi|15 : tactgaaatATCTTTATACATATAGAGCTA--TGTTTAATGTTTTAAAAAGAAATATACATG--AA---GC-----TA-T-----GGGCGAACGATTCAGTGCCAGA-TAAA---ACCAATTGTAACCAGCACGT--GCA--TTAGATA-----ACATAGA-CACCGTGAAAGTCGATTTTCACGTGCATACACGTACCAGTATGTTCTAT---------G-TTT-----------------ATCAA-------AC----CAGTCTGGTTTTATAGACTTT---------------------A--CG-TGAA-ACAATA--TTAGA-ATTTGTT-A-GATTTC-CC-AGT-TT-TGA----TATGCCTATTTTTTTCACCAAAT-GTGCG--TGCATGTG
gi|16 : tAAATAAAAGAACCTTCCGATTTTTATACATAT----CT---T-TATACTGTTATAAAAAGAAACCAACATGTCAAATTGCCTATATA-TGTT-CGGCCGAACGATTATGTGACAAAATAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACACACAAAAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGTACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTAATTTTATAGACTTTGTT-GTCAATAAG
gi|17 : ctgaacaAACGAACCTTCCGATTTCCATGCATAT----GT---T-TTTAATGTTATCAAAAGAAg
gi|17 : tactgaaaaacacgAGATCAA-------A------ATTCTG-TCTTATATATTGTTTT-GACATTAAGAAAAA-AGA--CGTTGTA-AAAC-A--TTGAA-A-CTGTTCA-GTTTTTATA-TTT-TT-TAA----TATGCCTA-ACATTCC-TCGAATATCACGCATGGACgaaaaaaatgttttccgccagatcaaaattctgtcttatatattgttttgacattaagaaaaaagacgttgtaaaacattgaaactgttcagtttttatattttttaatatgcctaacattcctcgaatatcacgcatggac
gi|18 : tactgaaaaacacgaacgaaccttccgatttccatgcatatgtttttaatgttatcaaaagaagaaaaaaatgttttccgccTGGCCTACATAGTATT-TGGGGGAATGATTAAATGTCAGA-TAAA---ACCAAATGTAACTAAAATGTGCACA--TTAGA-A-----AAACAGA-ATATGTGAAT-TCAATTTC----------CACGTACTAGAATGTTCTGT---------G-TTT------------ATCAAATCAA-------A-CTTTCAATTAGATTTTATAGACTTTATT-ATTAATATTAA-AG-AGA--
gi|19 : -GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTAGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAATCCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGa
gi|2 : AAA-AAAAGAAACTTCCAATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAATATGTCAAATGGTCTACCTA-TGTT-CGGGCGAATGATTATGTGTCAAA-TAAA---AGCAATTGTAATTGGATTGTATGCA--TTACACA-----AAGAAGA-AAATGTTTATGTCGATTTCCTCGTGCATGCACAGACCAGCATGATCTGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA---GTTGGA-AAAA-A--TTGAA-ATCTATCCA-TTTTTTTTT-CTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTTTTGCA--ATGAATGATGTTGCTAGGGTT----------CTAGCCATACTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGACGTATGGAAGATTTACCACGTAGTGGAC--GTCTGCGCATCACGACGCATGGGCAGGACCGCTATATCATGAACACC-ACCCACACAATGGTTTCCAAACTGC------CACTGCCACTCCTGCTAACACCCCTGGTACACATAAAAACCAAATATCTGACCAAACTGTACGCAATCTTCTGCCCGAG-GTTGGTCTACGTGGACGTCGTCC---TTA-TGTTGGCTGTGTTATGACGCGACGTCACTGCATAAATCATGTTAATTGGGCACATACACACTATCACTGGGTAACGCAACAATGGAATAGCGTTCTTTTCTCCGAC--CAGTCGATATTTTTCATTCATTGAAGTGATGGCAGAGTTTGAGTATACCGTAAAAGAAATGAACAATATGCCGACTGCTGTGTACTTGAACCAGATCGTTTTGAGGATGGTAGTTCCGTCATGGTCAGGGCAGGCAATGCG-----CACTGTTATTGCACATGTCTCATCATGATTGATGGGAATTTGAATGCCCAACGCTACCGAAATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATTATGCTAATTTCACTCTGTTTCAATAGGA--------------CATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCACTTATTGATGATTGGCCTGCCAAAAGCCCAGATCTGAATTCCATTGAACACATGTGGGATAATTTTG------ACAA-CATGTTAGACGTCGCCCTATTCTGACGTCG
gi|20 : ATGCTTAATGCTGGTATCGCGTCACGA
gi|20 : GCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAGTCGTTTCCAAACTGC------CACTGT------TGCTAACAACCCTGGTACACATAACAACCGAATATCCGAcgcacgggcaagaccgctatatcatgaacacccacctacgcagtcgtttccaaactgccactgttgctaacaaccctggtacacataacaaccgaatatccga
gi|21 : atgcttaatgctggtatcTTTCTAGCAAACCGGAAGTACTGAAGACCTGTCATACAGTGAACCCGTCCATCTGTCACAATTCGCTCCCAACACGGCTATATCATTAATACC
gi|22 : acgcaTTTACGTCGATTTCCTCCTGCATGCATAGTCCA-CATGATCAGT---------G-TTA------------ATGAAAGCAG-------Aaaatacaggatcggtttttacagtgacta
gi|23 : acactannnnnnnnnnTTGTA-AAAC-A--CTGAA-ATTGGT-CA-GTTTTCCTA-ATT-TT-TG-----------------TTCCTCAAAAT-TTACC--TGAACATattccaccaaattta
gi|25 : ACACCCCTGGTACACATAAAAAACGAATATCTG
gi|3 : AAA-AAAAGAAACTTACGATTTCTATACATAT----CT---T-TCAACTGTTATAAAAAGAAATCG-------------------TA-TGTT-CGGGCGA-CGGTTATGTATCAAA-TAAA---ACCAATTGTAACTGGATTGTATGCA--TTACACA-----AAAAAGA-AAACGTTCAAGTCAATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA--CGTTGAA-AAAA----CTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAAATCCACCGAAT-TAACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGAG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTTCTATTCGAAACATT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTCACCACATAGTTGAC--GTCTGGGCGTCATGACACATGGGCGAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCGAAACTGC------CACTGC------TGCTAATAACCCTGGTACACATAGCAACTAAATATCTGACCAAACTGTTTACAATCCTCTGTGCGAG-GGTGGTATACTTGGACTTCATCC---TTA-CGTTGG---------------------CCACGTAAATCGTCTTAATTGGGCACATATACACCATCGCTGGGTAAGGCAACAATGAAATAGCATTCTCTTCTCCAAC--GAGTCATGATTTTCCATTCATCAAAGTGATGACAGGGTTCGAGTATACTGTAAAAGAAATGAATGGTATGCCGACTGCTGTGTACTTAAATGAGATCGTTTTGGTGGTGGAGGTTCCATCAAGGTCTGGGCAGGCTTTGCG-----CATGGTTTTTGCACACCTCTCATCATGACCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTC
gi|4 : tacactgaacAACATGTCAAATGGCCTATATA-TGTT-CAGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACATTGTT-GTCAATAAGAA-AA-AAAAACGTTAAA-AAAA-A--T-GAA-ATTTATTCA-ATTGTCTTT-CTT-TT-TGA----TATGCCTA-TAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGAGTTGTTGGCAGTTCTAGCCGTGCTATTCAAAACCTT-AGGCAGCGTTTGCAAGCAA-CAGGACGTACA-------------------------TCCGCGCGTCACGACGCATGGGTTAGACCGCTATATCATGAACACCCACCTACACAATCGTTTCAAAACTGCTACTGCCACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGGTCAAGCTGTACGCAATCGTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTAC---TTA---------------TGACGCGACGTCACCGCGTAAATCGTGTTAACTGGGCACGTACACACAATTGCTGGGTAAGGCAACAATGGAATAGCGCTCTCTTTTCCGAC--GGGTCGGGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGTGTATACCGTAGAAGAAATTAACATTATGCCCACTGCTGTGCACTTGAACGAGATCATTTTGGGGGTGGCGGTTCCGTCATGCTCTAGGCAGGCATTGCG-----CATGGTTATTGCACACCTTTTGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGAT
gi|5 : AAA-AAATGAAATTTCCGATTTCTATACATAT----CT---T-TTTACTGTTGTAAAAAGAAATCAA--------ATTACCTACGTA-TGTT-TGGGCGAACGATTAGATGTCCAA-TAAA---ACCTAATGTAACTGGAGTGTACGCA--TTACACACA---AAAAAAACAAACGTTTACGTCGATTTTCTAGTGCATGCGCGGACCAGCATGATCCGT---------G-TTT------------ATAAAATCAA-------ACCTTTCAGTCTGATGTTATAGACTTTGTT-GTCAATAAGAA-AA-AGA--CGTTGAA-AAAC-A--TTGAA-ATTGATTCA-ATTTTCTTA-ATT-TTTTGA----TATGCTTA-GAATTCCACCAAAT-TTACG--TGAACGTGTCATCGACATGCTTAATGCTGGTATTGCG--ACAAATGAGGTTGCTAGGGTTGTTGACAGTTCTAGCCGTGCTATTCGAAACCTT-AGACAACGTTTTCAAGCAA-CATGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGT-TGTCACGACGCATGGGCAAGACTGCTATATCATGAACACCCACCTACACTATCGTTTC
gi|6 : actgaacCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TATT-CGGAAAAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACATTAACATTAATTTCCTCCTGCAAGCATGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCTGTCTGATTTTATAGACTTTGTT-GCCAAAAAGAA-AA-AGA--AATTT-----------TTGAA-ATTTATTCA-GTTTTCTTTCTTT-TT-TGA----TATGCCTA-GGATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGTTGGTACTGCG--ACGAATGTGGTTGCTAGGGTTTTTGGTAGTTCTAGCCGTGCTATCCAAAACCTTAAGACAACACTTTCAAGCAA-CAGGACGTACTGAAGATTTACCATGTAGTGGAC--TTCCGGGCGTCACAACGCATGGGCAAGACCGCTAGATCATGAACACCC
gi|7 : taAAA-TAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTCACTGTTATAAAAAGGAATCAATATGTCAAATAGCCTACATA-TGTT-CAGGCGAACTATTATGTGTCAAA-TAAA---ACCAATTGTAACTAGATTGTACGCA--TTACACA-----AAAAA----AACATTTATGTCGTTTTCCTCCTGCATGCACTGACCAGCATGATCCGT---------G-TAT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACTTTGTT-GTCAATTAGAA-AA-AGA--CGTTGAA-AAAA-A--ATGAA-ATTTATTCA-GTTTTCTTT-CTC-TT-TGA----TATGCATA-GAATTCCACCAA-------G--TGAACCTGCCATTGGCATGCTTAATGCTGGTATTGCG--ATGAATAAGGTTGCAAGGGTTGTTGGCAGTTATAGCCATGCTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTTACTAAGTAGct
gi|8 : tactgaacGAGATCTTTTTTGGGGTGGATGTTCCGTCATGGCCTGGGCAGCCATTGAG-----CATGGTTATCGCACACCTCTCGTCGCGATCGATGGGAATTTGAATGCCAAACGCTACCGAGATGAGATTCTTGCGAGGCACGCCATTCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTAAACAGGATAATGTC-ACAAGCCATACAGCTAGAGAAAATGTCACTTTCCTCAGGACGAATAACATTGCATTTATTGATGACGGGCCCGCCAAAAGCCCAGATCTGAATCCCATCACACACATGTGGGATAATTTGG------TCAAGCGTGTTAGACGTTGCCCTATTCCATCGTCG
gi|9 : agAGATTCTTGCGAGGTACGTCATCGCAGTGTTTCAAAATAACGCCAATATCATTCTGTTTCAACAGGATAATG-CCGCAAGCCATA----TAGAGATACTGTGAATTTCCTCAGAACGAAATACATTGCATTTATTGATGACTGATCCGCCAAAAGCCCCGATCTGAATCCCAT-GAACACATGTGGGGTAATTTGG------ACAAGCGTGTTAGACGTCACACTATTCCACCGCCGaacgtcaatgaactagcacaagcctgaaatcaggattggaacaacattccacaggccgaaatcgacacacttggcggttctatgcttcaatgatgccaggcagtcctcgatgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGTTCAATTTTCTTGATTTAGAAATTGTTTCCAAA
Alignments
lowQualScore : 111111111 111111111111 222222 222222 1 1 111 555555555555555 111 33333333 22222 3333 222222
lowQualScore : 5 7777 999 3 1 11 2 1 2 1 5 444 333 33 0 99999 44 33 2 0 000000000 2 222222222222 7777777 0 0 2 2 2 2 33 0 2 44 33 2 2 1 444 2 2 5555 2 2 44 55 2 5 4 77 1 333333 333333 0 0 2 0 33 1 777 666666666666666 0 1 444 1 1 66666666 3 0 0 0 33 1 1 1 00000 0 3 0000 2 6 888888 2 11
lowQualScore : . .... ... . . .. . . . . . ... ... .. . ..... .. .. . . ......... . ............ ....... . . . . . . .. . . .. .. . . . ... . . .... . . .. .. . . . .. . ...... ...... . . . . .. . ... ............... . . ... . . ........ . . . . .. . . . ..... . . .... . . ...... . ..
lowQualScore : 7 1111 222 3 2 44 7 5 7 0 3 777 666 44 9 77777 99 44 2 9 000000000 5 888888888888 6666666 8 2 5 7 7 7 77 7 7 99 77 7 7 0 333 7 7 7777 9 9 22 55 5 0 4 99 0 000000 000000 8 0 5 2 55 0 555 222222222222222 2 4 222 2 0 22222222 2 2 2 2 22 2 0 0 00000 2 2 5555 5 5 888888 5 77
consensus : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
Reference ( family-4113 ) : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG------TATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
gi|1 : GTTATAAAAATAAATCAACATGCCAAATGGCCTTCATA-TATT-CGGGCGAACGATTAC-TGTTAAA-TAAA---ACCAATTGTAACTGGAGTGTACGCA--TTACACA-----AAAAAGA-AAACATTTACGTCGATTTCCTTGTGTATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------TCCTTTCAGTCTGATTTTATAGACTTTGTCG-TCAATAAGAA-AA-A-GA--TGTTGAA-ACAA-A--TTGAA-ATTTATTCA-ATTTTCTTT-GTT-TT-TGA----TATGCTTA-GAATTGCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTATTGATGGTATTGCG--ACGAATAAGGTTGCTAGGGTTTTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAGCGTTTCCAAGCAA-CAGGACGTAAGGAAAAAATACAACGTAAGGAAC--GTCCGGGTGTCACGCAGCACCGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAGCAACCAAATATCTGCCTAAACTGAACGCAATA--CCGCGTAAATCGTG--TTAATTGGGCA-CGTACACATTATCGCTGG-------ATAATGCAAC
gi|1 : ACGCAAT---ACCGCGTAAATCGTGTTAATTGGGCACGTACACATTATCGCTGGATAATGCAACAATGCAACAATGGAATAGCGT-----------------CGAGATTTTCCATTCATCAAAGTGAATGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATTGTTTGGGTGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGTATCATATGGTTATCGCACACCTCTCAACGTGATCGATGGGAATTTGAATGCACAACGCAACCGAGATGAGATTCTAGCGAGACACGTCATCCCACTGTTTTAAATTAATGCGAATATCACTCTGTTTCAACATGATAATG-CAACAAGCCATACAGCTAGAGATACTATGAATTTCCTCAGGATGAATAACATTACATTTATTGATGACTGGTCCGGCAATAGCCCAGATCTAAATCCCATCGAACACATGTGGGATAATTTGGACTAACACAAGCGTaatgcaacaatggaatagcgtcgagattttccattcatcaaagtgaatgcagggttcgagtataccgtagaagaaatgaacgttatgccgactgctgtgtacttgaacgagattgtttgggtggtggaggttccgtcatggtctgggcaggcattgcgtatcatatggttatcgcacacctctcaacgtgatcgatgggaatttgaatgcacaacgcaaccgagatgagattctagcgagacacgtcatcccactgttttaaattaatgcgaatatcactctgtttcaacatgataatgcaacaagccatacagctagagatactatgaatttcctcaggatgaataacattacatttattgatgactggtccggcaatagcccagatctaaatcccatcgaacacatgtgggataatttggactaacacaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|10 : gttataaaaataaatcaacatgccaaatggccttcatatattcgggcgaacgattactgttaaataaaaccaattgtaactggagtgtacgcattacacaaaaaagaaaacatttacgtcgatttccttgtgtatgcacggaccagcatgatccgtgtttatgaaatcaatcctttcagtctgattttatagactttgtcgtcaataagaaaaagatgttgaaacaaattgaaatttattcaattttctttgtttttgatatgcttagaattgcaccaaatttacgtgaacgtgccattggcatgcttattgatggtattgcgacgaataaggttgctagggtttttggcagttctagccgtgctattcgaaaccttaggcagcgtttccaagcaacaggacgtaaggaaaaaatacaacgtaaggaacgtccgggtgtcacgcagcaccggcaagaccgctatatcatgaacacccacctacgcaatcgtttccaaactgccactgctgctaacacccctggtacacatagcaaccaaatatctgcctaaactgaTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAATGAAATTAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTATGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACATTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTCGGA-AAAA-A--TTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAATTCCATCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATCGCG--taattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|11 : AAA-AAAAGAAACATATGATGTCCATACAT-T----TTAAAT-TTTAATGTTTTAAAAAGAAATAAACATGTGAAATGACTTGCATA-GTTT-TGGGTGAACAATTAAGTGTCAGA-TAAATTCACTGATTATAAATAG--CATGAGCACTTTAGACA-----AAAtcac
gi|11 : ctaaacTTGAAAATTGAT-GTGCACA--TTGGACA-----AAATAAA-----GTGAATGTTGATTT--TGGAGGA-GTATA-ATTATTATATTCTGT---------G-TTT------------ATCCAATCAA-------ACTTTT-GGTCTGATTTTATAGACTTCATTG-TCAATAAAAACAA-A-GA--TGTTGAA-AGTC-A--TTGAA-CTTTG-TCA-GTTTTCCTT-GTT-TT-TGA----Tttgataatttgaaaattgatgtgcacattggacaaaataaagtgaatgttgattttggaggagtataattattatattctgtgtttatccaatcaaacttttggtctgattttatagacttcattgtcaataaaaacaaagatgttgaaagtcattgaactttgtcagttttccttgtttttgat
gi|12 : ctaaacaaaaaaagaaacatatgatgtccatacattttaaattttaatgttttaaaaagaaataaacatgtgaaatgacttgcatagttttgggtgaacaattaagtgtcagataaattcactgattataaatagcatgagcactttagacaaaattgataatTACATAT----AT---T-T--AATGTTATAAAAAGAAATAAA------AGATGACCTACATG-GTTT-CGGTCGCACAAT-AAGTCGCAGT-TTAA---ACTAATTATAACTAGCTCATGCACA--TTAGGCA-----GAATGGA-CAACGT------------------GCATGCACCGACAAGTATGTTCTGTCTGTTTCTAG-TTT------------ATT---TCAGTCTGTTTAACTTTCAG-CTTATTGTATAGACTTCATTGGTCAATAAGAA-AATA-TA--CGTGGGA-AAAA-AACTTGGATATTTGTTAATTTTTTCCTA-GTG-TT-TAATACGTATGTCTA-AAATTTCAGAAAAT-ATAC
gi|13 : ACATGTAAAATAATCTACAT--TGTTTCGGACGAACATTTATGTGTCAAAATAAA---TGCAGTTGTAACTAGCACGAGCGGA--TTAGACA-----CAATAGA-CAACGTGGGTGCAGTTCTCCACGTGCTTGCACGTACCAGTACGTTACGT---------GATTTTGTTATGTGATAATGAAAT-AA-------ATATTTTCGTCTGATTGTA---------TTG-TAAAT--GAA-AA-A-TA--AGTTCAATAAAC-A--TTGAA-TTTTGGTCA-GTTTTTCTA-GTTATG-TGA----TATcgaagaaaaaagaaacgtccgct
gi|14 : atactgaacacaaaaagttatatgtttaaaacttaaagtacagAA-ACAAGAAA-TTCTCATTTGCACATATAT----AG---T-TTTACTGTTATAAACAGATGTACACATGTCAAATG-------TA-GTTT-CGAGCGAACGATTAATTGTCATA-TATA---AACAATTGAAAGTAGCTCGTGAACA--TTAGACA-----AAAAAGA-CAAAGCGAAAATCGAATTC------AAT--ACG--CAAGTATAA--CAT---------G-TT-----------------AATTAT-------ACC---------AATTT-------CTTATTT-TCAATGAGAA-AA-A-GA--CGTTGAA-AATC-A--TTCAA-ATTTGTTCA-GTTTTTCCT-ATA-AA-AAA----CATGCCTG-AAATTTCA-CATAT-ATAGA--TGAACGTGCCAataatagtaatatgcctaataatt
gi|15 : tactgaaatATCTTTATACATATAGAGCTA--TGTTTAATGTTTTAAAAAGAAATATACATG--AA---GC-----TA-T-----GGGCGAACGATTCAGTGCCAGA-TAAA---ACCAATTGTAACCAGCACGT--GCA--TTAGATA-----ACATAGA-CACCGTGAAAGTCGATTTTCACGTGCATACACGTACCAGTATGTTCTAT---------G-TTT-----------------ATCAA-------AC----CAGTCTGGTTTTATAGACTTT----------------------A--CG-TGAA-ACAATA--TTAGA-ATTTGTT-A-GATTTC-CC-AGT-TT-TGA----TATGCCTATTTTTTTCACCAAAT-GTGCG--TGCATGTG
gi|16 : tAAATAAAAGAACCTTCCGATTTTTATACATAT----CT---T-TATACTGTTATAAAAAGAAACCAACATGTCAAATTGCCTATATA-TGTT-CGGCCGAACGATTATGTGACAAAATAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACACACAAAAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGTACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTAATTTTATAGACTTTGTTG-TCAATAAG
gi|17 : ctgaacaAACGAACCTTCCGATTTCCATGCATAT----GT---T-TTTAATGTTATCAAAAGAAg
gi|17 : tactgaaaaacacgAGATCAA-------A------ATTCTG-TCTTATATATTGTTTTG-ACATTAAGAA-AA-AAGA--CGTTGTA-AAAC-A--TTGAA-ACT-GTTCA-GTTTTTATA-TTT-TT-TAA----TATGCCTA-ACATTCC-TCGAATATCACGCATGGACgaaaaaaatgttttccgccagatcaaaattctgtcttatatattgttttgacattaagaaaaaagacgttgtaaaacattgaaactgttcagtttttatattttttaatatgcctaacattcctcgaatatcacgcatggac
gi|18 : tactgaaaaacacgaacgaaccttccgatttccatgcatatgtttttaatgttatcaaaagaagaaaaaaatgttttccgccTGGCCTACATAGTATT-TGGGGGAATGATTAAATGTCAGA-TAAA---ACCAAATGTAACTAAAATGTGCACA--TTAGA-A-----AAACAGA-ATATGTGAAT-TCAATTTC----------CACGTACTAGAATGTTCTGT---------G-TTT------------ATCAAATCAA-------A-CTTTCAATTAGATTTTATAGACTTTATTA-TTAATATTAA-AG-A-GA--
gi|19 : -GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTAGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAATCCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGa
gi|2 : AAA-AAAAGAAACTTCCAATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAATATGTCAAATGGTCTACCTA-TGTT-CGGGCGAATGATTATGTGTCAAA-TAAA---AGCAATTGTAATTGGATTGTATGCA--TTACACA-----AAGAAGA-AAATGTTTATGTCGATTTCCTCGTGCATGCACAGACCAGCATGATCTGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA---GTTGGA-AAAA-A--TTGAA-ATCTATCCA-TTTTTTTTT-CTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTTTTGCA--ATGAATGATGTTGCTAGGGTT----------CTAGCCATACTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGACGTATGGAAGATTTACCACGTAGTGGAC--GTCTGCGCATCACGACGCATGGGCAGGACCGCTATATCATGAACACC-ACCCACACAATGGTTTCCAAACTGC------CACTGCCACTCCTGCTAACACCCCTGGTACACATAAAAACCAAATATCTGACCAAACTGTACGCAATCTTCTGCCCGAG-GTTGGTCTACGTGGACGTCGTCC---TTA-TGTTGGCTGTGTTATGACGCGACGTCACTGCATAAATCATGTTAATTGGGCACATACACACTATCACTGGGTAACGCAACAATG--------GAATAGCGTTCTTTTCTCCGACCAGTCGATATTTTTCATTCATTGAAGTGATGGCAGAGTTTGAGTATACCGTAAAAGAAATGAACAATATGCCGACTGCTGTGTACTTGAACCAGATCGTTTTGAGGATGGTAGTTCCGTCATGGTCAGGGCAGGCAATGCG-----CACTGTTATTGCACATGTCTCATCATGATTGATGGGAATTTGAATGCCCAACGCTACCGAAATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATTATGCTAATTTCACTCTGTTTCAATAGGA--------------CATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCACTTATTGATGATTGGCCTGCCAAAAGCCCAGATCTGAATTCCATTGAACACATGTGGGATAATTTTG------ACAA-CATGTTAGACGTCGCCCTATTCTGACGTCG
gi|20 : ATGCTTAATGCTGGTATCGCGTCACGA
gi|20 : GCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAGTCGTTTCCAAACTGC------CACTGT------TGCTAACAACCCTGGTACACATAACAACCGAATATCCGAcgcacgggcaagaccgctatatcatgaacacccacctacgcagtcgtttccaaactgccactgttgctaacaaccctggtacacataacaaccgaatatccga
gi|21 : atgcttaatgctggtatcTTTCTAGCAAACCGGAAGTACTGAAGACCTGTCATACAGTGAACCCGTCCATCTGTCACAATTCGCTCCCAACACGGCTATATCATTAATACC
gi|22 : acgcaTTTACGTCGATTTCCTCCTGCATGCATAGTCCA-CATGATCAGT---------G-TTA------------ATGAAAGCAG-------Aaaatacaggatcggtttttacagtgacta
gi|23 : acactannnnnnnnnnTTGTA-AAAC-A--CTGAA-ATTGGT-CA-GTTTTCCTA-ATT-TT-TG-----------------TTCCTCAAAAT-TTACC--TGAACATattccaccaaattta
gi|25 : ACACCCCTGGTACACATAAAAAACGAATATCTG
gi|3 : AAA-AAAAGAAACTTACGATTTCTATACATAT----CT---T-TCAACTGTTATAAAAAGAAATCG-------------------TA-TGTT-CGGGCGA-CGGTTATGTATCAAA-TAAA---ACCAATTGTAACTGGATTGTATGCA--TTACACA-----AAAAAGA-AAACGTTCAAGTCAATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA----CTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAAATCCACCGAAT-TAACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGAG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTTCTATTCGAAACATT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTCACCACATAGTTGAC--GTCTGGGCGTCATGACACATGGGCGAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCGAAACTGC------CACTGC------TGCTAATAACCCTGGTACACATAGCAACTAAATATCTGACCAAACTGTTTACAATCCTCTGTGCGAG-GGTGGTATACTTGGACTTCATCC---TTA-CGTTGG---------------------CCACGTAAATCGTCTTAATTGGGCACATATACACCATCGCTGGGTAAGGCAACAATG--------AAATAGCATTCTCTTCTCCAACGAGTCATGATTTTCCATTCATCAAAGTGATGACAGGGTTCGAGTATACTGTAAAAGAAATGAATGGTATGCCGACTGCTGTGTACTTAAATGAGATCGTTTTGGTGGTGGAGGTTCCATCAAGGTCTGGGCAGGCTTTGCG-----CATGGTTTTTGCACACCTCTCATCATGACCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTC
gi|4 : tacactgaacAACATGTCAAATGGCCTATATA-TGTT-CAGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACATTGTTG-TCAATAAGAA-AA-A-AAAACGTTAAA-AAAA-A--T-GAA-ATTTATTCA-ATTGTCTTT-CTT-TT-TGA----TATGCCTA-TAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGAGTTGTTGGCAGTTCTAGCCGTGCTATTCAAAACCTT-AGGCAGCGTTTGCAAGCAA-CAGGACGTACA-------------------------TCCGCGCGTCACGACGCATGGGTTAGACCGCTATATCATGAACACCCACCTACACAATCGTTTCAAAACTGCTACTGCCACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGGTCAAGCTGTACGCAATCGTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTAC---TTA---------------TGACGCGACGTCACCGCGTAAATCGTGTTAACTGGGCACGTACACACAATTGCTGGGTAAGGCAACAATG--------GAATAGCGCTCTCTTTTCCGACGGGTCGGGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGTGTATACCGTAGAAGAAATTAACATTATGCCCACTGCTGTGCACTTGAACGAGATCATTTTGGGGGTGGCGGTTCCGTCATGCTCTAGGCAGGCATTGCG-----CATGGTTATTGCACACCTTTTGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGAT
gi|5 : AAA-AAATGAAATTTCCGATTTCTATACATAT----CT---T-TTTACTGTTGTAAAAAGAAATCAA--------ATTACCTACGTA-TGTT-TGGGCGAACGATTAGATGTCCAA-TAAA---ACCTAATGTAACTGGAGTGTACGCA--TTACACACA---AAAAAAACAAACGTTTACGTCGATTTTCTAGTGCATGCGCGGACCAGCATGATCCGT---------G-TTT------------ATAAAATCAA-------ACCTTTCAGTCTGATGTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAC-A--TTGAA-ATTGATTCA-ATTTTCTTA-ATT-TTTTGA----TATGCTTA-GAATTCCACCAAAT-TTACG--TGAACGTGTCATCGACATGCTTAATGCTGGTATTGCG--ACAAATGAGGTTGCTAGGGTTGTTGACAGTTCTAGCCGTGCTATTCGAAACCTT-AGACAACGTTTTCAAGCAA-CATGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGT-TGTCACGACGCATGGGCAAGACTGCTATATCATGAACACCCACCTACACTATCGTTTC
gi|6 : actgaacCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TATT-CGGAAAAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACATTAACATTAATTTCCTCCTGCAAGCATGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCTGTCTGATTTTATAGACTTTGTTG-CCAAAAAGAA-AA-A-GA--AATTT-----------TTGAA-ATTTATTCA-GTTTTCTTTCTTT-TT-TGA----TATGCCTA-GGATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGTTGGTACTGCG--ACGAATGTGGTTGCTAGGGTTTTTGGTAGTTCTAGCCGTGCTATCCAAAACCTTAAGACAACACTTTCAAGCAA-CAGGACGTACTGAAGATTTACCATGTAGTGGAC--TTCCGGGCGTCACAACGCATGGGCAAGACCGCTAGATCATGAACACCC
gi|7 : taAAA-TAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTCACTGTTATAAAAAGGAATCAATATGTCAAATAGCCTACATA-TGTT-CAGGCGAACTATTATGTGTCAAA-TAAA---ACCAATTGTAACTAGATTGTACGCA--TTACACA-----AAAAA----AACATTTATGTCGTTTTCCTCCTGCATGCACTGACCAGCATGATCCGT---------G-TAT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATTAGAA-AA-A-GA--CGTTGAA-AAAA-A--ATGAA-ATTTATTCA-GTTTTCTTT-CTC-TT-TGA----TATGCATA-GAATTCCACCAA-------G--TGAACCTGCCATTGGCATGCTTAATGCTGGTATTGCG--ATGAATAAGGTTGCAAGGGTTGTTGGCAGTTATAGCCATGCTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTTACTAAGTAGct
gi|8 : tactgaacGAGATCTTTTTTGGGGTGGATGTTCCGTCATGGCCTGGGCAGCCATTGAG-----CATGGTTATCGCACACCTCTCGTCGCGATCGATGGGAATTTGAATGCCAAACGCTACCGAGATGAGATTCTTGCGAGGCACGCCATTCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTAAACAGGATAATGTC-ACAAGCCATACAGCTAGAGAAAATGTCACTTTCCTCAGGACGAATAACATTGCATTTATTGATGACGGGCCCGCCAAAAGCCCAGATCTGAATCCCATCACACACATGTGGGATAATTTGG------TCAAGCGTGTTAGACGTTGCCCTATTCCATCGTCG
gi|9 : agAGATTCTTGCGAGGTACGTCATCGCAGTGTTTCAAAATAACGCCAATATCATTCTGTTTCAACAGGATAATG-CCGCAAGCCATA----TAGAGATACTGTGAATTTCCTCAGAACGAAATACATTGCATTTATTGATGACTGATCCGCCAAAAGCCCCGATCTGAATCCCAT-GAACACATGTGGGGTAATTTGG------ACAAGCGTGTTAGACGTCACACTATTCCACCGCCGaacgtcaatgaactagcacaagcctgaaatcaggattggaacaacattccacaggccgaaatcgacacacttggcggttctatgcttcaatgatgccaggcagtcctcgatgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGTTCAATTTTCTTGATTTAGAAATTGTTTCCAAA
Alignments
lowQualScore : 111111111 111111111111 222222 222222 1 1 111 444444444444444 111 33333333 22222 3333 222222
lowQualScore : 5 7777 999 3 1 11 2 1 2 1 5 444 333 33 0 99999 44 33 2 0 000000000 2 222222222222 7777777 0 0 2 2 2 2 33 0 2 44 33 2 2 1 444 2 2 5555 2 2 44 55 2 5 4 77 1 333333 333333 0 0 2 0 33 1 777 444444444444444 0 1 444 1 1 66666666 3 0 0 0 33 1 1 1 00000 0 3 0000 2 6 888888 2 11
lowQualScore : . .... ... . . .. . . . . . ... ... .. . ..... .. .. . . ......... . ............ ....... . . . . . . .. . . .. .. . . . ... . . .... . . .. .. . . . .. . ...... ...... . . . . .. . ... ............... . . ... . . ........ . . . . .. . . . ..... . . .... . . ...... . ..
lowQualScore : 7 1111 222 3 2 44 7 5 7 0 3 777 666 44 9 77777 99 44 2 9 000000000 5 888888888888 6666666 8 2 5 7 7 7 77 7 7 99 77 7 7 0 333 7 7 7777 9 9 22 55 5 0 4 99 0 000000 000000 8 0 5 2 55 0 555 888888888888888 2 4 222 2 0 22222222 2 2 2 2 22 2 0 0 00000 2 2 5555 5 5 888888 5 77
consensus : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
Reference ( family-4113 ) : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
gi|1 : GTTATAAAAATAAATCAACATGCCAAATGGCCTTCATA-TATT-CGGGCGAACGATTAC-TGTTAAA-TAAA---ACCAATTGTAACTGGAGTGTACGCA--TTACACA-----AAAAAGA-AAACATTTACGTCGATTTCCTTGTGTATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------TCCTTTCAGTCTGATTTTATAGACTTTGTCG-TCAATAAGAA-AA-A-GA--TGTTGAA-ACAA-A--TTGAA-ATTTATTCA-ATTTTCTTT-GTT-TT-TGA----TATGCTTA-GAATTGCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTATTGATGGTATTGCG--ACGAATAAGGTTGCTAGGGTTTTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAGCGTTTCCAAGCAA-CAGGACGTAAGGAAAAAATACAACGTAAGGAAC--GTCCGGGTGTCACGCAGCACCGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAGCAACCAAATATCTGCCTAAACTGAACGCAATA--CCGCGTAAATCGTG--TTAATTGGGCA-CGTACACATTATCGCTGG-------ATAATGCAAC
gi|1 : ACGCAAT---ACCGCGTAAATCGTGTTAATTGGGCACGTACACATTATCGCTGGATAATGCAACAATGCAACAATGGAATAGCGT-----------------CGAGATTTTCCATTCATCAAAGTGAATGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATTGTTTGGGTGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGTATCATATGGTTATCGCACACCTCTCAACGTGATCGATGGGAATTTGAATGCACAACGCAACCGAGATGAGATTCTAGCGAGACACGTCATCCCACTGTTTTAAATTAATGCGAATATCACTCTGTTTCAACATGATAATG-CAACAAGCCATACAGCTAGAGATACTATGAATTTCCTCAGGATGAATAACATTACATTTATTGATGACTGGTCCGGCAATAGCCCAGATCTAAATCCCATCGAACACATGTGGGATAATTTGGACTAACACAAGCGTaatgcaacaatggaatagcgtcgagattttccattcatcaaagtgaatgcagggttcgagtataccgtagaagaaatgaacgttatgccgactgctgtgtacttgaacgagattgtttgggtggtggaggttccgtcatggtctgggcaggcattgcgtatcatatggttatcgcacacctctcaacgtgatcgatgggaatttgaatgcacaacgcaaccgagatgagattctagcgagacacgtcatcccactgttttaaattaatgcgaatatcactctgtttcaacatgataatgcaacaagccatacagctagagatactatgaatttcctcaggatgaataacattacatttattgatgactggtccggcaatagcccagatctaaatcccatcgaacacatgtgggataatttggactaacacaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|10 : gttataaaaataaatcaacatgccaaatggccttcatatattcgggcgaacgattactgttaaataaaaccaattgtaactggagtgtacgcattacacaaaaaagaaaacatttacgtcgatttccttgtgtatgcacggaccagcatgatccgtgtttatgaaatcaatcctttcagtctgattttatagactttgtcgtcaataagaaaaagatgttgaaacaaattgaaatttattcaattttctttgtttttgatatgcttagaattgcaccaaatttacgtgaacgtgccattggcatgcttattgatggtattgcgacgaataaggttgctagggtttttggcagttctagccgtgctattcgaaaccttaggcagcgtttccaagcaacaggacgtaaggaaaaaatacaacgtaaggaacgtccgggtgtcacgcagcaccggcaagaccgctatatcatgaacacccacctacgcaatcgtttccaaactgccactgctgctaacacccctggtacacatagcaaccaaatatctgcctaaactgaTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAATGAAATTAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTATGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACATTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTCGGA-AAAA-A--TTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAATTCCATCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATCGCG--taattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|11 : AAA-AAAAGAAACATATGATGTCCATACAT-T----TTAAAT-TTTAATGTTTTAAAAAGAAATAAACATGTGAAATGACTTGCATA-GTTT-TGGGTGAACAATTAAGTGTCAGA-TAAATTCACTGATTATAAATAG--CATGAGCACTTTAGACA-----AAAtcac
gi|11 : ctaaacTTGAAAATTGAT-GTGCACA--TTGGACA-----AAATAAA-----GTGAATGTTGATTT--TGGAGGA-GTATA-ATTATTATATTCTGT---------G-TTT------------ATCCAATCAA-------ACTTTT-GGTCTGATTTTATAGACTTCATTG-TCAATAAAAACAA-A-GA--TGTTGAA-AGTC-A--TTGAA-CTTTG-TCA-GTTTTCCTT-GTT-TT-TGA----Tttgataatttgaaaattgatgtgcacattggacaaaataaagtgaatgttgattttggaggagtataattattatattctgtgtttatccaatcaaacttttggtctgattttatagacttcattgtcaataaaaacaaagatgttgaaagtcattgaactttgtcagttttccttgtttttgat
gi|12 : ctaaacaaaaaaagaaacatatgatgtccatacattttaaattttaatgttttaaaaagaaataaacatgtgaaatgacttgcatagttttgggtgaacaattaagtgtcagataaattcactgattataaatagcatgagcactttagacaaaattgataatTACATAT----AT---T-T--AATGTTATAAAAAGAAATAAA------AGATGACCTACATG-GTTT-CGGTCGCACAAT-AAGTCGCAGT-TTAA---ACTAATTATAACTAGCTCATGCACA--TTAGGCA-----GAATGGA-CAACGT------------------GCATGCACCGACAAGTATGTTCTGTCTGTTTCTAG-TTT------------ATT---TCAGTCTGTTTAACTTTCAG-CTTATTGTATAGACTTCATTGGTCAATAAGAA-AATA-TA--CGTGGGA-AAAA-AACTTGGATATTTGTTAATTTTTTCCTA-GTG-TT-TAATACGTATGTCTA-AAATTTCAGAAAAT-ATAC
gi|13 : ACATGTAAAATAATCTACAT--TGTTTCGGACGAACATTTATGTGTCAAAATAAA---TGCAGTTGTAACTAGCACGAGCGGA--TTAGACA-----CAATAGA-CAACGTGGGTGCAGTTCTCCACGTGCTTGCACGTACCAGTACGTTACGT---------GATTTTGTTATGTGATAATGAAAT-AA-------ATATTTTCGTCTGATTGTA---------TTG-TAAAT--GAA-AA-A-TA--AGTTCAATAAAC-A--TTGAA-TTTTGGTCA-GTTTTTCTA-GTTATG-TGA----TATcgaagaaaaaagaaacgtccgct
gi|14 : atactgaacacaaaaagttatatgtttaaaacttaaagtacagAA-ACAAGAAA-TTCTCATTTGCACATATAT----AG---T-TTTACTGTTATAAACAGATGTACACATGTCAAATG-------TA-GTTT-CGAGCGAACGATTAATTGTCATA-TATA---AACAATTGAAAGTAGCTCGTGAACA--TTAGACA-----AAAAAGA-CAAAGCGAAAATCGAATTC------AAT--ACG--CAAGTATAA--CAT---------G-TT-----------------AATTAT-------ACC---------AATTT-------CTTATTT-TCAATGAGAA-AA-A-GA--CGTTGAA-AATC-A--TTCAA-ATTTGTTCA-GTTTTTCCT-ATA-AA-AAA----CATGCCTG-AAATTTCA-CATAT-ATAGA--TGAACGTGCCAataatagtaatatgcctaataatt
gi|15 : tactgaaatATCTTTATACATATAGAGCTA--TGTTTAATGTTTTAAAAAGAAATATACATG--AA---GC-----TA-T-----GGGCGAACGATTCAGTGCCAGA-TAAA---ACCAATTGTAACCAGCACGT--GCA--TTAGATA-----ACATAGA-CACCGTGAAAGTCGATTTTCACGTGCATACACGTACCAGTATGTTCTAT---------G-TTT-----------------ATCAA-------AC----CAGTCTGGTTTTATAGACTTT----------------------A--CG-TGAA-ACAATA--TTAGA-ATTTGTT-A-GATTTC-CC-AGT-TT-TGA----TATGCCTATTTTTTTCACCAAAT-GTGCG--TGCATGTG
gi|16 : tAAATAAAAGAACCTTCCGATTTTTATACATAT----CT---T-TATACTGTTATAAAAAGAAACCAACATGTCAAATTGCCTATATA-TGTT-CGGCCGAACGATTATGTGACAAAATAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACACACAAAAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGTACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTAATTTTATAGACTTTGTTG-TCAATAAG
gi|17 : ctgaacaAACGAACCTTCCGATTTCCATGCATAT----GT---T-TTTAATGTTATCAAAAGAAg
gi|17 : tactgaaaaacacgAGATCAA-------A------ATTCTG-TCTTATATATTGTTTTG-ACATTAAGAA-AA-AAGA--CGTTGTA-AAAC-A--TTGAA-ACT-GTTCA-GTTTTTATA-TTT-TT-TAA----TATGCCTA-ACATTCC-TCGAATATCACGCATGGACgaaaaaaatgttttccgccagatcaaaattctgtcttatatattgttttgacattaagaaaaaagacgttgtaaaacattgaaactgttcagtttttatattttttaatatgcctaacattcctcgaatatcacgcatggac
gi|18 : tactgaaaaacacgaacgaaccttccgatttccatgcatatgtttttaatgttatcaaaagaagaaaaaaatgttttccgccTGGCCTACATAGTATT-TGGGGGAATGATTAAATGTCAGA-TAAA---ACCAAATGTAACTAAAATGTGCACA--TTAGA-A-----AAACAGA-ATATGTGAAT-TCAATTTC----------CACGTACTAGAATGTTCTGT---------G-TTT------------ATCAAATCAA-------A-CTTTCAATTAGATTTTATAGACTTTATTA-TTAATATTAA-AG-A-GA--
gi|19 : -GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTAGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAATCCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGa
gi|2 : AAA-AAAAGAAACTTCCAATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAATATGTCAAATGGTCTACCTA-TGTT-CGGGCGAATGATTATGTGTCAAA-TAAA---AGCAATTGTAATTGGATTGTATGCA--TTACACA-----AAGAAGA-AAATGTTTATGTCGATTTCCTCGTGCATGCACAGACCAGCATGATCTGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA---GTTGGA-AAAA-A--TTGAA-ATCTATCCA-TTTTTTTTT-CTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTTTTGCA--ATGAATGATGTTGCTAGGGTT----------CTAGCCATACTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGACGTATGGAAGATTTACCACGTAGTGGAC--GTCTGCGCATCACGACGCATGGGCAGGACCGCTATATCATGAACACC-ACCCACACAATGGTTTCCAAACTGC------CACTGCCACTCCTGCTAACACCCCTGGTACACATAAAAACCAAATATCTGACCAAACTGTACGCAATCTTCTGCCCGAG-GTTGGTCTACGTGGACGTCGTCC---TTA-TGTTGGCTGTGTTATGACGCGACGTCACTGCATAAATCATGTTAATTGGGCACATACACACTATCACTGGGTAACGCAACAATG--------GAATAGCGTTCTTTTCTCCGACCAGTCGATATTTTTCATTCATTGAAGTGATGGCAGAGTTTGAGTATACCGTAAAAGAAATGAACAATATGCCGACTGCTGTGTACTTGAACCAGATCGTTTTGAGGATGGTAGTTCCGTCATGGTCAGGGCAGGCAATGCG-----CACTGTTATTGCACATGTCTCATCATGATTGATGGGAATTTGAATGCCCAACGCTACCGAAATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATTATGCTAATTTCACTCTGTTTCAATAGGA--------------CATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCACTTATTGATGATTGGCCTGCCAAAAGCCCAGATCTGAATTCCATTGAACACATGTGGGATAATTTTG------ACAA-CATGTTAGACGTCGCCCTATTCTGACGTCG
gi|20 : ATGCTTAATGCTGGTATCGCGTCACGA
gi|20 : GCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAGTCGTTTCCAAACTGC------CACTGT------TGCTAACAACCCTGGTACACATAACAACCGAATATCCGAcgcacgggcaagaccgctatatcatgaacacccacctacgcagtcgtttccaaactgccactgttgctaacaaccctggtacacataacaaccgaatatccga
gi|21 : atgcttaatgctggtatcTTTCTAGCAAACCGGAAGTACTGAAGACCTGTCATACAGTGAACCCGTCCATCTGTCACAATTCGCTCCCAACACGGCTATATCATTAATACC
gi|22 : acgcaTTTACGTCGATTTCCTCCTGCATGCATAGTCCA-CATGATCAGT---------G-TTA------------ATGAAAGCAG-------Aaaatacaggatcggtttttacagtgacta
gi|23 : acactannnnnnnnnnTTGTA-AAAC-A--CTGAA-ATTGGT-CA-GTTTTCCTA-ATT-TT-TG-----------------TTCCTCAAAAT-TTACC--TGAACATattccaccaaattta
gi|25 : ACACCCCTGGTACACATAAAAAACGAATATCTG
gi|3 : AAA-AAAAGAAACTTACGATTTCTATACATAT----CT---T-TCAACTGTTATAAAAAGAAATCG-------------------TA-TGTT-CGGGCGA-CGGTTATGTATCAAA-TAAA---ACCAATTGTAACTGGATTGTATGCA--TTACACA-----AAAAAGA-AAACGTTCAAGTCAATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA----CTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAAATCCACCGAAT-TAACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGAG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTTCTATTCGAAACATT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTCACCACATAGTTGAC--GTCTGGGCGTCATGACACATGGGCGAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCGAAACTGC------CACTGC------TGCTAATAACCCTGGTACACATAGCAACTAAATATCTGACCAAACTGTTTACAATCCTCTGTGCGAG-GGTGGTATACTTGGACTTCATCC---TTA-CGTTGG---------------------CCACGTAAATCGTCTTAATTGGGCACATATACACCATCGCTGGGTAAGGCAACAATG--------AAATAGCATTCTCTTCTCCAACGAGTCATGATTTTCCATTCATCAAAGTGATGACAGGGTTCGAGTATACTGTAAAAGAAATGAATGGTATGCCGACTGCTGTGTACTTAAATGAGATCGTTTTGGTGGTGGAGGTTCCATCAAGGTCTGGGCAGGCTTTGCG-----CATGGTTTTTGCACACCTCTCATCATGACCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTC
gi|4 : tacactgaacAACATGTCAAATGGCCTATATA-TGTT-CAGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACATTGTTG-TCAATAAGAA-AA-A-AAAACGTTAAA-AAAA-A--T-GAA-ATTTATTCA-ATTGTCTTT-CTT-TT-TGA----TATGCCTA-TAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGAGTTGTTGGCAGTTCTAGCCGTGCTATTCAAAACCTT-AGGCAGCGTTTGCAAGCAA-CAGGACGTACA-------------------------TCCGCGCGTCACGACGCATGGGTTAGACCGCTATATCATGAACACCCACCTACACAATCGTTTCAAAACTGCTACTGCCACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGGTCAAGCTGTACGCAATCGTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTAC---TTA---------------TGACGCGACGTCACCGCGTAAATCGTGTTAACTGGGCACGTACACACAATTGCTGGGTAAGGCAACAATG--------GAATAGCGCTCTCTTTTCCGACGGGTCGGGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGTGTATACCGTAGAAGAAATTAACATTATGCCCACTGCTGTGCACTTGAACGAGATCATTTTGGGGGTGGCGGTTCCGTCATGCTCTAGGCAGGCATTGCG-----CATGGTTATTGCACACCTTTTGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGAT
gi|5 : AAA-AAATGAAATTTCCGATTTCTATACATAT----CT---T-TTTACTGTTGTAAAAAGAAATCAA--------ATTACCTACGTA-TGTT-TGGGCGAACGATTAGATGTCCAA-TAAA---ACCTAATGTAACTGGAGTGTACGCA--TTACACACA---AAAAAAACAAACGTTTACGTCGATTTTCTAGTGCATGCGCGGACCAGCATGATCCGT---------G-TTT------------ATAAAATCAA-------ACCTTTCAGTCTGATGTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAC-A--TTGAA-ATTGATTCA-ATTTTCTTA-ATT-TTTTGA----TATGCTTA-GAATTCCACCAAAT-TTACG--TGAACGTGTCATCGACATGCTTAATGCTGGTATTGCG--ACAAATGAGGTTGCTAGGGTTGTTGACAGTTCTAGCCGTGCTATTCGAAACCTT-AGACAACGTTTTCAAGCAA-CATGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGT-TGTCACGACGCATGGGCAAGACTGCTATATCATGAACACCCACCTACACTATCGTTTC
gi|6 : actgaacCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TATT-CGGAAAAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACATTAACATTAATTTCCTCCTGCAAGCATGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCTGTCTGATTTTATAGACTTTGTTG-CCAAAAAGAA-AA-A-GA--AATTT-----------TTGAA-ATTTATTCA-GTTTTCTTTCTTT-TT-TGA----TATGCCTA-GGATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGTTGGTACTGCG--ACGAATGTGGTTGCTAGGGTTTTTGGTAGTTCTAGCCGTGCTATCCAAAACCTTAAGACAACACTTTCAAGCAA-CAGGACGTACTGAAGATTTACCATGTAGTGGAC--TTCCGGGCGTCACAACGCATGGGCAAGACCGCTAGATCATGAACACCC
gi|7 : taAAA-TAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTCACTGTTATAAAAAGGAATCAATATGTCAAATAGCCTACATA-TGTT-CAGGCGAACTATTATGTGTCAAA-TAAA---ACCAATTGTAACTAGATTGTACGCA--TTACACA-----AAAAA----AACATTTATGTCGTTTTCCTCCTGCATGCACTGACCAGCATGATCCGT---------G-TAT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATTAGAA-AA-A-GA--CGTTGAA-AAAA-A--ATGAA-ATTTATTCA-GTTTTCTTT-CTC-TT-TGA----TATGCATA-GAATTCCACCAA-------G--TGAACCTGCCATTGGCATGCTTAATGCTGGTATTGCG--ATGAATAAGGTTGCAAGGGTTGTTGGCAGTTATAGCCATGCTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTTACTAAGTAGct
gi|8 : tactgaacGAGATCTTTTTTGGGGTGGATGTTCCGTCATGGCCTGGGCAGCCATTGAG-----CATGGTTATCGCACACCTCTCGTCGCGATCGATGGGAATTTGAATGCCAAACGCTACCGAGATGAGATTCTTGCGAGGCACGCCATTCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTAAACAGGATAATGTC-ACAAGCCATACAGCTAGAGAAAATGTCACTTTCCTCAGGACGAATAACATTGCATTTATTGATGACGGGCCCGCCAAAAGCCCAGATCTGAATCCCATCACACACATGTGGGATAATTTGG------TCAAGCGTGTTAGACGTTGCCCTATTCCATCGTCG
gi|9 : agAGATTCTTGCGAGGTACGTCATCGCAGTGTTTCAAAATAACGCCAATATCATTCTGTTTCAACAGGATAATG-CCGCAAGCCATA----TAGAGATACTGTGAATTTCCTCAGAACGAAATACATTGCATTTATTGATGACTGATCCGCCAAAAGCCCCGATCTGAATCCCAT-GAACACATGTGGGGTAATTTGG------ACAAGCGTGTTAGACGTCACACTATTCCACCGCCGaacgtcaatgaactagcacaagcctgaaatcaggattggaacaacattccacaggccgaaatcgacacacttggcggttctatgcttcaatgatgccaggcagtcctcgatgcc
blockSeqs : T AGAG AAA G C TC G G T T A TTC ATT CT CACAA CA TT T CTGTTTCTA A TGTTATGTGATA TCTGTTT G C T A AA T AT AC T T T TCT A T TACG T A CA TC G A A CC C TACTGC CACTCC T . G GT C . TGTTGGCTGTGTTA A GTC T C . T CA A A T . T TCA C T . G AT
blockSeqs : . . A . C TG . T . A A . CTC . CA A GA T . . . . . . . . . . A . . . C TC . . . . . . . G . . . T . . C . G TT C . CGTTGG G GTC C G . T GA T G A . T CCG C C . G AC
blockSeqs : . . . . C TA . T . A . . CAC . . C GG T . . . . . . . . . . C . . . C TG . . . . . . . G . . . G . . G . G GT A . . G . A G . T GG G T C . . . . . . .
blockSeqs : . . . . C TC . G . T . . CTC . . C GA A . . . . . . . . . . A . . . C AG . . . . . . . G . . . C . . . A .
blockSeqs : . . . . C TC . T . A . . CAC . . C GA A . . . . . . . . . . C . . . C AG . . . . . . . T . . . T
blockSeqs : . . . . C TC . G . A . . ATT . . C TT C . . . . . . . . . . C . . . A TA . . . . . . . G . . . G
blockSeqs : . . . T TC . A . T . . AAT . . A GA T . . . . . . . . . . C . . . T CA . . . . . . . . . .
blockSeqs : . . . C TC . G . A . . ATT . . A TT T . . . . . . . . . . A . . . C AT . . . . . . . .
blockSeqs : . . . C TC . G . T . . ATT . . A TT C . . . . . . . . . . C . . . T TC . . . . . . .
blockSeqs : . . . T . . G . T . . ATT . . A TC A . . . . . . . . . . A . . . T AA . . . . . .
blockSeqs : . . . . . . G . T . . AGT . . A TT C . . . . . . . . . . A . . . T TC . . . . . .
blockSeqs : . . . A . G . . ATT . . A TT C . . . . . . . . . . C . . . T TC . . . . . .
blockSeqs : . . . G . T . . ATT . . . TA C . . . . . . . . . . A . . . T AA . . . . .
blockSeqs : . . . T . . AT . . . TT T . . . . . . . . . . . . . . . TC . . .
blockSeqs : C . . . . . . . . .
blockSeqs : .
blockSeqCons : *****
originalCons : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
finalCons : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGTTCAATTTTCTTGATTTAGAAATTGTTTCCAAA
Alignments
lowQualScore : 111111111 111111111111 222222 222222 1 1 111 444444444444444 111 33333333 22222 3333 222222
lowQualScore : 5 7777 999 3 1 11 2 1 2 1 5 444 333 33 0 99999 44 33 2 0 000000000 2 222222222222 7777777 0 0 2 2 2 2 33 0 2 44 33 2 2 1 444 2 2 5555 2 2 44 55 2 5 4 77 1 333333 333333 0 0 2 0 33 1 777 444444444444444 0 1 444 1 1 66666666 3 0 0 0 33 1 1 1 00000 0 3 0000 2 6 888888 2 11
lowQualScore : . .... ... . . .. . . . . . ... ... .. . ..... .. .. . . ......... . ............ ....... . . . . . . .. . . .. .. . . . ... . . .... . . .. .. . . . .. . ...... ...... . . . . .. . ... ............... . . ... . . ........ . . . . .. . . . ..... . . .... . . ...... . ..
lowQualScore : 7 1111 222 3 2 44 7 5 7 0 3 777 666 44 9 77777 99 44 2 9 000000000 5 888888888888 6666666 8 2 5 7 7 7 77 7 7 99 77 7 7 0 333 7 7 7777 9 9 22 55 5 0 4 99 0 000000 000000 8 0 5 2 55 0 555 888888888888888 2 4 222 2 0 22222222 2 2 2 2 22 2 0 0 00000 2 2 5555 5 5 888888 5 77
consensus : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
Reference ( family-4113 ) : AAA-AAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTANGTGTCAAA-TAAA---ACCAATTGTAACTGGATCGTACGCA--TTACACA-----AAAAAGA-AAACGTTNACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA-A--TTGAA-ATTTGTTCA-GTTTTCTTT-NTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGNGCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGACCAAACTGTACGCAATCNTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTNC---TTA-CGTTGG-------ATGACGCGACGTCACCGCGTAAATCGTGTTAATTGGGCACGTACACACTATCGCTGGGTAANGCAACAATG--------GAATAGCGTTCTCTTCTCCGACGAGTCGAGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGNTATGCCGACTGCTGTGTACTTGAACGAGATCGTTTTGGGGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCG-----CATGGTTATCGCACACCTCTCGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTCAACAGGATAATG-C-GCAAGCCATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCATTTATTGATGACTGGCCCGCCAAAAGCCCAGATCTGAATCCCATCGAACACATGTGGGATAATTTGG------ACAAGCGTGTTAGACGTCGCCCTATTCCGNCGTCG
gi|1 : GTTATAAAAATAAATCAACATGCCAAATGGCCTTCATA-TATT-CGGGCGAACGATTAC-TGTTAAA-TAAA---ACCAATTGTAACTGGAGTGTACGCA--TTACACA-----AAAAAGA-AAACATTTACGTCGATTTCCTTGTGTATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------TCCTTTCAGTCTGATTTTATAGACTTTGTCG-TCAATAAGAA-AA-A-GA--TGTTGAA-ACAA-A--TTGAA-ATTTATTCA-ATTTTCTTT-GTT-TT-TGA----TATGCTTA-GAATTGCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTATTGATGGTATTGCG--ACGAATAAGGTTGCTAGGGTTTTTGGCAGTTCTAGCCGTGCTATTCGAAACCTT-AGGCAGCGTTTCCAAGCAA-CAGGACGTAAGGAAAAAATACAACGTAAGGAAC--GTCCGGGTGTCACGCAGCACCGGCAAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCCAAACTGC------CACTGC------TGCTAACACCCCTGGTACACATAGCAACCAAATATCTGCCTAAACTGAACGCAATA--CCGCGTAAATCGTG--TTAATTGGGCA-CGTACACATTATCGCTGG-------ATAATGCAAC
gi|1 : ACGCAAT---ACCGCGTAAATCGTGTTAATTGGGCACGTACACATTATCGCTGGATAATGCAACAATGCAACAATGGAATAGCGT-----------------CGAGATTTTCCATTCATCAAAGTGAATGCAGGGTTCGAGTATACCGTAGAAGAAATGAACGTTATGCCGACTGCTGTGTACTTGAACGAGATTGTTTGGGTGGTGGAGGTTCCGTCATGGTCTGGGCAGGCATTGCGTATCATATGGTTATCGCACACCTCTCAACGTGATCGATGGGAATTTGAATGCACAACGCAACCGAGATGAGATTCTAGCGAGACACGTCATCCCACTGTTTTAAATTAATGCGAATATCACTCTGTTTCAACATGATAATG-CAACAAGCCATACAGCTAGAGATACTATGAATTTCCTCAGGATGAATAACATTACATTTATTGATGACTGGTCCGGCAATAGCCCAGATCTAAATCCCATCGAACACATGTGGGATAATTTGGACTAACACAAGCGTaatgcaacaatggaatagcgtcgagattttccattcatcaaagtgaatgcagggttcgagtataccgtagaagaaatgaacgttatgccgactgctgtgtacttgaacgagattgtttgggtggtggaggttccgtcatggtctgggcaggcattgcgtatcatatggttatcgcacacctctcaacgtgatcgatgggaatttgaatgcacaacgcaaccgagatgagattctagcgagacacgtcatcccactgttttaaattaatgcgaatatcactctgtttcaacatgataatgcaacaagccatacagctagagatactatgaatttcctcaggatgaataacattacatttattgatgactggtccggcaatagcccagatctaaatcccatcgaacacatgtgggataatttggactaacacaagcgttaattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|10 : gttataaaaataaatcaacatgccaaatggccttcatatattcgggcgaacgattactgttaaataaaaccaattgtaactggagtgtacgcattacacaaaaaagaaaacatttacgtcgatttccttgtgtatgcacggaccagcatgatccgtgtttatgaaatcaatcctttcagtctgattttatagactttgtcgtcaataagaaaaagatgttgaaacaaattgaaatttattcaattttctttgtttttgatatgcttagaattgcaccaaatttacgtgaacgtgccattggcatgcttattgatggtattgcgacgaataaggttgctagggtttttggcagttctagccgtgctattcgaaaccttaggcagcgtttccaagcaacaggacgtaaggaaaaaatacaacgtaaggaacgtccgggtgtcacgcagcaccggcaagaccgctatatcatgaacacccacctacgcaatcgtttccaaactgccactgctgctaacacccctggtacacatagcaaccaaatatctgcctaaactgaTTCCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAATGAAATTAACATGTCAAATGGCCTACATA-TGTT-CGGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTATGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACATTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTCGGA-AAAA-A--TTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAATTCCATCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATCGCG--taattcaggtgttgaataacattccacaggccgaaatcaacacatttgtcggttctgtgcgccaccgatgccaggcagtcctcgatgcccaaggtggccgtacccagtattaatatgtgattttggtgtacgacccctaccaca
gi|11 : AAA-AAAAGAAACATATGATGTCCATACAT-T----TTAAAT-TTTAATGTTTTAAAAAGAAATAAACATGTGAAATGACTTGCATA-GTTT-TGGGTGAACAATTAAGTGTCAGA-TAAATTCACTGATTATAAATAG--CATGAGCACTTTAGACA-----AAAtcac
gi|11 : ctaaacTTGAAAATTGAT-GTGCACA--TTGGACA-----AAATAAA-----GTGAATGTTGATTT--TGGAGGA-GTATA-ATTATTATATTCTGT---------G-TTT------------ATCCAATCAA-------ACTTTT-GGTCTGATTTTATAGACTTCATTG-TCAATAAAAACAA-A-GA--TGTTGAA-AGTC-A--TTGAA-CTTTG-TCA-GTTTTCCTT-GTT-TT-TGA----Tttgataatttgaaaattgatgtgcacattggacaaaataaagtgaatgttgattttggaggagtataattattatattctgtgtttatccaatcaaacttttggtctgattttatagacttcattgtcaataaaaacaaagatgttgaaagtcattgaactttgtcagttttccttgtttttgat
gi|12 : ctaaacaaaaaaagaaacatatgatgtccatacattttaaattttaatgttttaaaaagaaataaacatgtgaaatgacttgcatagttttgggtgaacaattaagtgtcagataaattcactgattataaatagcatgagcactttagacaaaattgataatTACATAT----AT---T-T--AATGTTATAAAAAGAAATAAA------AGATGACCTACATG-GTTT-CGGTCGCACAAT-AAGTCGCAGT-TTAA---ACTAATTATAACTAGCTCATGCACA--TTAGGCA-----GAATGGA-CAACGT------------------GCATGCACCGACAAGTATGTTCTGTCTGTTTCTAG-TTT------------ATT---TCAGTCTGTTTAACTTTCAG-CTTATTGTATAGACTTCATTGGTCAATAAGAA-AATA-TA--CGTGGGA-AAAA-AACTTGGATATTTGTTAATTTTTTCCTA-GTG-TT-TAATACGTATGTCTA-AAATTTCAGAAAAT-ATAC
gi|13 : ACATGTAAAATAATCTACAT--TGTTTCGGACGAACATTTATGTGTCAAAATAAA---TGCAGTTGTAACTAGCACGAGCGGA--TTAGACA-----CAATAGA-CAACGTGGGTGCAGTTCTCCACGTGCTTGCACGTACCAGTACGTTACGT---------GATTTTGTTATGTGATAATGAAAT-AA-------ATATTTTCGTCTGATTGTA---------TTG-TAAAT--GAA-AA-A-TA--AGTTCAATAAAC-A--TTGAA-TTTTGGTCA-GTTTTTCTA-GTTATG-TGA----TATcgaagaaaaaagaaacgtccgct
gi|14 : atactgaacacaaaaagttatatgtttaaaacttaaagtacagAA-ACAAGAAA-TTCTCATTTGCACATATAT----AG---T-TTTACTGTTATAAACAGATGTACACATGTCAAATG-------TA-GTTT-CGAGCGAACGATTAATTGTCATA-TATA---AACAATTGAAAGTAGCTCGTGAACA--TTAGACA-----AAAAAGA-CAAAGCGAAAATCGAATTC------AAT--ACG--CAAGTATAA--CAT---------G-TT-----------------AATTAT-------ACC---------AATTT-------CTTATTT-TCAATGAGAA-AA-A-GA--CGTTGAA-AATC-A--TTCAA-ATTTGTTCA-GTTTTTCCT-ATA-AA-AAA----CATGCCTG-AAATTTCA-CATAT-ATAGA--TGAACGTGCCAataatagtaatatgcctaataatt
gi|15 : tactgaaatATCTTTATACATATAGAGCTA--TGTTTAATGTTTTAAAAAGAAATATACATG--AA---GC-----TA-T-----GGGCGAACGATTCAGTGCCAGA-TAAA---ACCAATTGTAACCAGCACGT--GCA--TTAGATA-----ACATAGA-CACCGTGAAAGTCGATTTTCACGTGCATACACGTACCAGTATGTTCTAT---------G-TTT-----------------ATCAA-------AC----CAGTCTGGTTTTATAGACTTT----------------------A--CG-TGAA-ACAATA--TTAGA-ATTTGTT-A-GATTTC-CC-AGT-TT-TGA----TATGCCTATTTTTTTCACCAAAT-GTGCG--TGCATGTG
gi|16 : tAAATAAAAGAACCTTCCGATTTTTATACATAT----CT---T-TATACTGTTATAAAAAGAAACCAACATGTCAAATTGCCTATATA-TGTT-CGGCCGAACGATTATGTGACAAAATAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACACACAAAAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGTACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTAATTTTATAGACTTTGTTG-TCAATAAG
gi|17 : ctgaacaAACGAACCTTCCGATTTCCATGCATAT----GT---T-TTTAATGTTATCAAAAGAAg
gi|17 : tactgaaaaacacgAGATCAA-------A------ATTCTG-TCTTATATATTGTTTTG-ACATTAAGAA-AA-AAGA--CGTTGTA-AAAC-A--TTGAA-ACT-GTTCA-GTTTTTATA-TTT-TT-TAA----TATGCCTA-ACATTCC-TCGAATATCACGCATGGACgaaaaaaatgttttccgccagatcaaaattctgtcttatatattgttttgacattaagaaaaaagacgttgtaaaacattgaaactgttcagtttttatattttttaatatgcctaacattcctcgaatatcacgcatggac
gi|18 : tactgaaaaacacgaacgaaccttccgatttccatgcatatgtttttaatgttatcaaaagaagaaaaaaatgttttccgccTGGCCTACATAGTATT-TGGGGGAATGATTAAATGTCAGA-TAAA---ACCAAATGTAACTAAAATGTGCACA--TTAGA-A-----AAACAGA-ATATGTGAAT-TCAATTTC----------CACGTACTAGAATGTTCTGT---------G-TTT------------ATCAAATCAA-------A-CTTTCAATTAGATTTTATAGACTTTATTA-TTAATATTAA-AG-A-GA--
gi|19 : -GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTAGTATTGCG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTGCTATTCGAATCCTT-AGGCAACGTTTTCAAGCAA-CAGGACGTACGGAAGATTTACCACGTAGa
gi|2 : AAA-AAAAGAAACTTCCAATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAATATGTCAAATGGTCTACCTA-TGTT-CGGGCGAATGATTATGTGTCAAA-TAAA---AGCAATTGTAATTGGATTGTATGCA--TTACACA-----AAGAAGA-AAATGTTTATGTCGATTTCCTCGTGCATGCACAGACCAGCATGATCTGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA---GTTGGA-AAAA-A--TTGAA-ATCTATCCA-TTTTTTTTT-CTT-TT-TGA----TATGCCTA-GAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTTTTGCA--ATGAATGATGTTGCTAGGGTT----------CTAGCCATACTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGACGTATGGAAGATTTACCACGTAGTGGAC--GTCTGCGCATCACGACGCATGGGCAGGACCGCTATATCATGAACACC-ACCCACACAATGGTTTCCAAACTGC------CACTGCCACTCCTGCTAACACCCCTGGTACACATAAAAACCAAATATCTGACCAAACTGTACGCAATCTTCTGCCCGAG-GTTGGTCTACGTGGACGTCGTCC---TTA-TGTTGGCTGTGTTATGACGCGACGTCACTGCATAAATCATGTTAATTGGGCACATACACACTATCACTGGGTAACGCAACAATG--------GAATAGCGTTCTTTTCTCCGACCAGTCGATATTTTTCATTCATTGAAGTGATGGCAGAGTTTGAGTATACCGTAAAAGAAATGAACAATATGCCGACTGCTGTGTACTTGAACCAGATCGTTTTGAGGATGGTAGTTCCGTCATGGTCAGGGCAGGCAATGCG-----CACTGTTATTGCACATGTCTCATCATGATTGATGGGAATTTGAATGCCCAACGCTACCGAAATGAGATTCTTGCGAGGCACGTCATCCCACTGTTTCAAAATTATGCTAATTTCACTCTGTTTCAATAGGA--------------CATACAGCTAGAGATACTGTGAATTTCCTCAGGACGAATAACATTGCACTTATTGATGATTGGCCTGCCAAAAGCCCAGATCTGAATTCCATTGAACACATGTGGGATAATTTTG------ACAA-CATGTTAGACGTCGCCCTATTCTGACGTCG
gi|20 : ATGCTTAATGCTGGTATCGCGTCACGA
gi|20 : GCGTCACGACGCACGGGCAAGACCGCTATATCATGAACACCCACCTACGCAGTCGTTTCCAAACTGC------CACTGT------TGCTAACAACCCTGGTACACATAACAACCGAATATCCGAcgcacgggcaagaccgctatatcatgaacacccacctacgcagtcgtttccaaactgccactgttgctaacaaccctggtacacataacaaccgaatatccga
gi|21 : atgcttaatgctggtatcTTTCTAGCAAACCGGAAGTACTGAAGACCTGTCATACAGTGAACCCGTCCATCTGTCACAATTCGCTCCCAACACGGCTATATCATTAATACC
gi|22 : acgcaTTTACGTCGATTTCCTCCTGCATGCATAGTCCA-CATGATCAGT---------G-TTA------------ATGAAAGCAG-------Aaaatacaggatcggtttttacagtgacta
gi|23 : acactannnnnnnnnnTTGTA-AAAC-A--CTGAA-ATTGGT-CA-GTTTTCCTA-ATT-TT-TG-----------------TTCCTCAAAAT-TTACC--TGAACATattccaccaaattta
gi|25 : ACACCCCTGGTACACATAAAAAACGAATATCTG
gi|3 : AAA-AAAAGAAACTTACGATTTCTATACATAT----CT---T-TCAACTGTTATAAAAAGAAATCG-------------------TA-TGTT-CGGGCGA-CGGTTATGTATCAAA-TAAA---ACCAATTGTAACTGGATTGTATGCA--TTACACA-----AAAAAGA-AAACGTTCAAGTCAATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAA----CTGAA-ATTTATTCA-GTTTTCTTT-CTT-TT-TGA----TATGCCTA-GAAATCCACCGAAT-TAACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGAG--ACGAATGAGGTTGCTAGGGTTGTTGGCAGTTCTAGCCGTTCTATTCGAAACATT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTCACCACATAGTTGAC--GTCTGGGCGTCATGACACATGGGCGAGACCGCTATATCATGAACACCCACCTACGCAATCGTTTCGAAACTGC------CACTGC------TGCTAATAACCCTGGTACACATAGCAACTAAATATCTGACCAAACTGTTTACAATCCTCTGTGCGAG-GGTGGTATACTTGGACTTCATCC---TTA-CGTTGG---------------------CCACGTAAATCGTCTTAATTGGGCACATATACACCATCGCTGGGTAAGGCAACAATG--------AAATAGCATTCTCTTCTCCAACGAGTCATGATTTTCCATTCATCAAAGTGATGACAGGGTTCGAGTATACTGTAAAAGAAATGAATGGTATGCCGACTGCTGTGTACTTAAATGAGATCGTTTTGGTGGTGGAGGTTCCATCAAGGTCTGGGCAGGCTTTGCG-----CATGGTTTTTGCACACCTCTCATCATGACCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGATTC
gi|4 : tacactgaacAACATGTCAAATGGCCTATATA-TGTT-CAGGCGAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACGTTTACGTCGATTTCCTCGTGCATGCACGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACATTGTTG-TCAATAAGAA-AA-A-AAAACGTTAAA-AAAA-A--T-GAA-ATTTATTCA-ATTGTCTTT-CTT-TT-TGA----TATGCCTA-TAATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGCTGGTATTGCG--ACGAATGAGGTTGCTAGAGTTGTTGGCAGTTCTAGCCGTGCTATTCAAAACCTT-AGGCAGCGTTTGCAAGCAA-CAGGACGTACA-------------------------TCCGCGCGTCACGACGCATGGGTTAGACCGCTATATCATGAACACCCACCTACACAATCGTTTCAAAACTGCTACTGCCACTGC------TGCTAACACCCCTGGTACACATAACAACCGAATATCTGGTCAAGCTGTACGCAATCGTCTGCGCGAG-GGTGGTCTACTTGGACGTCGTAC---TTA---------------TGACGCGACGTCACCGCGTAAATCGTGTTAACTGGGCACGTACACACAATTGCTGGGTAAGGCAACAATG--------GAATAGCGCTCTCTTTTCCGACGGGTCGGGATTTTCCATTCATCGAAGTGATGGCAGGGTTCGTGTATACCGTAGAAGAAATTAACATTATGCCCACTGCTGTGCACTTGAACGAGATCATTTTGGGGGTGGCGGTTCCGTCATGCTCTAGGCAGGCATTGCG-----CATGGTTATTGCACACCTTTTGTCGTGATCGATGGGAATTTGAATGCCCAACGCTACCGAGATGAGAT
gi|5 : AAA-AAATGAAATTTCCGATTTCTATACATAT----CT---T-TTTACTGTTGTAAAAAGAAATCAA--------ATTACCTACGTA-TGTT-TGGGCGAACGATTAGATGTCCAA-TAAA---ACCTAATGTAACTGGAGTGTACGCA--TTACACACA---AAAAAAACAAACGTTTACGTCGATTTTCTAGTGCATGCGCGGACCAGCATGATCCGT---------G-TTT------------ATAAAATCAA-------ACCTTTCAGTCTGATGTTATAGACTTTGTTG-TCAATAAGAA-AA-A-GA--CGTTGAA-AAAC-A--TTGAA-ATTGATTCA-ATTTTCTTA-ATT-TTTTGA----TATGCTTA-GAATTCCACCAAAT-TTACG--TGAACGTGTCATCGACATGCTTAATGCTGGTATTGCG--ACAAATGAGGTTGCTAGGGTTGTTGACAGTTCTAGCCGTGCTATTCGAAACCTT-AGACAACGTTTTCAAGCAA-CATGACGTACGGAAGATTTACCACGTAGTGGAC--GTCCGT-TGTCACGACGCATGGGCAAGACTGCTATATCATGAACACCCACCTACACTATCGTTTC
gi|6 : actgaacCGATTTCTATACATAT----CT---T-TTTACTGTTATAAAAAGAAATCAACATGTCAAATGGCCTACATA-TATT-CGGAAAAACGATTATGTGTCAAA-TAAA---ACCAATTGTAACTGGATTGTACGCA--TTACACA-----AAAAAGA-AAACATTAACATTAATTTCCTCCTGCAAGCATGGACCAGCATGATCCGT---------G-TTT------------ATGAAATCAA-------ACCTTTCTGTCTGATTTTATAGACTTTGTTG-CCAAAAAGAA-AA-A-GA--AATTT-----------TTGAA-ATTTATTCA-GTTTTCTTTCTTT-TT-TGA----TATGCCTA-GGATTCCACCAAAT-TTACG--TGAACGTGCCATTGGCATGCTTAATGTTGGTACTGCG--ACGAATGTGGTTGCTAGGGTTTTTGGTAGTTCTAGCCGTGCTATCCAAAACCTTAAGACAACACTTTCAAGCAA-CAGGACGTACTGAAGATTTACCATGTAGTGGAC--TTCCGGGCGTCACAACGCATGGGCAAGACCGCTAGATCATGAACACCC
gi|7 : taAAA-TAAAGAAACTTCCGATTTCTATACATAT----CT---T-TTCACTGTTATAAAAAGGAATCAATATGTCAAATAGCCTACATA-TGTT-CAGGCGAACTATTATGTGTCAAA-TAAA---ACCAATTGTAACTAGATTGTACGCA--TTACACA-----AAAAA----AACATTTATGTCGTTTTCCTCCTGCATGCACTGACCAGCATGATCCGT---------G-TAT------------ATGAAATCAA-------ACTTTTCAGTCTGATTTTATAGACTTTGTTG-TCAATTAGAA-AA-A-GA--CGTTGAA-AAAA-A--ATGAA-ATTTATTCA-GTTTTCTTT-CTC-TT-TGA----TATGCATA-GAATTCCACCAA-------G--TGAACCTGCCATTGGCATGCTTAATGCTGGTATTGCG--ATGAATAAGGTTGCAAGGGTTGTTGGCAGTTATAGCCATGCTATTCGAAACCTT-AGGCAACATTTTCAAGCAA-CAGGATGTACGGAAGATTTACTAAGTAGct
gi|8 : tactgaacGAGATCTTTTTTGGGGTGGATGTTCCGTCATGGCCTGGGCAGCCATTGAG-----CATGGTTATCGCACACCTCTCGTCGCGATCGATGGGAATTTGAATGCCAAACGCTACCGAGATGAGATTCTTGCGAGGCACGCCATTCCACTGTTTCAAAATAATGCCAATATCACTCTGTTTAAACAGGATAATGTC-ACAAGCCATACAGCTAGAGAAAATGTCACTTTCCTCAGGACGAATAACATTGCATTTATTGATGACGGGCCCGCCAAAAGCCCAGATCTGAATCCCATCACACACATGTGGGATAATTTGG------TCAAGCGTGTTAGACGTTGCCCTATTCCATCGTCG
gi|9 : agAGATTCTTGCGAGGTACGTCATCGCAGTGTTTCAAAATAACGCCAATATCATTCTGTTTCAACAGGATAATG-CCGCAAGCCATA----TAGAGATACTGTGAATTTCCTCAGAACGAAATACATTGCATTTATTGATGACTGATCCGCCAAAAGCCCCGATCTGAATCCCAT-GAACACATGTGGGGTAATTTGG------ACAAGCGTGTTAGACGTCACACTATTCCACCGCCGaacgtcaatgaactagcacaagcctgaaatcaggattggaacaacattccacaggccgaaatcgacacacttggcggttctatgcttcaatgatgccaggcagtcctcgatgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGTTCAATTTTCTTGATTTAGAAATTGTTTCCAAA