lowQualScore : 1 1 222 2222222222 444444444444444444444444444 1111 111 2 1 1 1 8888 88888888888888888888888 1 11 11 22222 1 1 1 1 7777777777777777777 22 1111111 55555555555555555555555 11111111 11111 6666666666 111 11 55555555555
lowQualScore : 7 0 2 1 111 666 55 6 1111111111 777777777777777777777777777 4444 1 555 1 0 2 7 3 7 5555 99 33333333333333333333333 9 4 3 44 6 3 6 6 6 88 7 2 22222 6 7 6 5 3 5 0 0 1111111111111111111 5 1 5 22 1 8 0 4 4 6666666 55555555555555555555555 66 5 88888888 00000 1 44 8 777 3 4 777 0 3333333333 55 222 777777 3 55 4 6 5 33 11111111111
lowQualScore : . . . . ... ... .. . .......... ........................... .... . ... . . . . . . .... .. ....................... . . . .. . . . . . .. . . ..... . . . . . . . . ................... . . . .. . . . . . ....... ....................... .. . ........ ..... . .. . ... . . ... . .......... .. ... ...... . .. . . . .. ...........
lowQualScore : 8 7 7 7 222 333 88 0 9999999999 888888888888888888888888888 2222 0 888 0 3 7 0 5 0 0000 22 55555555555555555555555 2 0 2 00 0 4 7 0 7 33 8 8 22222 7 3 0 0 7 0 7 9 9999999999999999999 7 7 7 33 4 7 6 3 7 2222222 11111111111111111111111 99 0 11111111 99999 1 00 1 999 4 4 000 7 1111111111 55 555 777777 6 00 5 8 7 99 77777777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCGAAATAAAAATTTCTGCACTCGTTCAACGCACC-TAATACATAATGATAAT----------GAAAAAA---AANTTAA-------A----T----ATA----ACAG--CGGAAAAATGTTTTTGTAAGTTTAATGAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAAC--AAC----TGCAA----AATT-----TTTTCCAAATCATNAAAGTCGACACTTCTAGTAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG-AAAA--AATAATAAAAAAACA---NAA-CAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAACTGTTAAAGAATAGTGGGTGGGGAATGGGTTGATTTCAGCACTTATGAC-TTTTC------T-GGGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAAA-TAAAGAAAATTATG-AAAAT-ATAATTAAAAAAAATACTNACAATTTCTC-------TATTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTAT---AATCGAATCACGTGACTCTC-GGATTTCTCGGGGAT--GTACGTTATT---TTNA-AAATAGCCAC--TATAGCGGAAGAACGGGCTTCGAGTCTCT--TGTA-T--TATGTCTCTG
Reference ( gi|2 ) : TTTTCAAACTTACCAGTGTCATGTGTCAATTCATAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACC-TAATACACGATGATAGT----------AAAAAAA---AACTTAA-------A----T----ATA----ATAC--CGAAATAAAGTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG----AAAAAAAAAC--AAC----TGCAA----AATTGTC--TTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG-AAAA--AATAATAAAAAAATA---TTA-CAGCAGAAAAATGTTTTTATAAGTTTAATGAACAACTGTTAAAGAATAGTTGGCGTGGAATGGGTTGATCTCAGCACTTATTAC-ATAAC------T-GGGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAAA-TAAAGAAAATTATG-AAAAT-TTAATTAAAAAAAATACTTAAAATTTCTC-------TATTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTAT---AATCGAATCACGTGACTGTCGGGATTTCTCGGGGAT--GTACGTTTTT---TTTA-AAATAGCCAC--TACAGCGGAGGAACAGGCTTCCAGTCTCC-TTGT--C--TATGTCTCTG
gi|4 : AGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACC-TAATACATGACGGTAGT----------AAAAAAA---A--TTTA-------A----T----GTA----ATAC--CGAAATAAACTTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAAC--AAC----TGCAA----AATTGTC--TTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT-AAAA--AATAATAAAAAAACA---TAA-CAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAACTGTTAAAGAATAGTGGGTGGGGAATAGGTTGATTTCAGCACTTGTGAC-TTTTCT-----T-GGGAATCAAGATTCAAAAACAATAACAATCAATCTAATACACTAAA-TAAAGAAAATTATG-AAAAT-ATAATT--AAAATTTTTTTAAAATTTCTA-------TACTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTAT---AATCGAATCACGTGAC----------TCTCGGGGAT--GTGTG-TTAT---TTTA-AAATAGCCAC--TATAGCGGAAGAACAAGGTTCGAGTCT---TTGTA-T--TATGTTTCT
gi|7 : GATATCAGAATAAAAATTTCT--------GCAATGCACC-TAATACATGATGACAGT----------AAAAAAACCCAACTTAA-------A----T----
gi|3 : ATATAGAAATAAAAATTTCTGCACTCATTCAACATATT-AAATACATAATGATAAT----------GAAAAAA---AAAAAAA-------A----TAATAATA----ACAG--CGGAAAAATGTTTTTGTAAGTTTAATGAAccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|5 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACA-AAATAAATAATGATAATGAAAAATAATAAAAAAA---AAC---------------------ATA----ACAG--CGAAA-AATTTTTTTGTAAATTTAATGAAcaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|1 : tctctgattcacctaatacatgatgacagtaaaaaaaacaacttcaatccaaatcataaaagtcgacacttctaataagcATATCAAAATAAAAATT-CTGCACTC-----GTTCAACATACTACATAATGATAAT----------GAAAAAA---AA--TAATAAAAGAA----C----ACA----ACAG--TGGAAAAATGTTTTTGTAAGTTTAATGAAcaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|7 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtagatatcagaataaaaatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccATATCGAAATAAAAATTTCTGCACTCGTTCAACATACT-AAATAAATAATGATAAT----------GAAAAAA---AAAAAAA-------A----A----AAAAAACATACAGCGGAAAAATGTTTTTGTAAGTTTAATGAAcaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|5 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtaaaaaaacccaacttaaatccaaatcatagaagacgacacttctaataagcTTCACC-TAATACATGATGACAGT----------AAAAAAAAC-AACTTCA-------A----T----caactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|6 : tctctgaC-TAAT-TATAATGATAAT----------GAAAAAA---ATATTAA-------AAAAAT----ATA----ACAG--CGGAA-AATGTTTTTGTAAGTTTAATGAAccaaatcataaaagtcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|5 : taaattaaacatgcatcattcaacataAAAAAAAAC--AAC----TTCAA----------------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG-AAAAATAATAA-AAAAAAACA---TAA-CAGC-GAAAAATTTTTTTGTAAATTTAATGAACAACTGTATAAGAATAGTGGTTGGGGAATTGGTTGATTTCAGCACT-------ATAACTTTTCTT-GGGAACCAAGACTCAAAAACACTAACAATCAATCTAATACACTAAA-TAAAGAAAATAATG-AAAAT-ATCATT-AAAAAAATACTAACAATTTCAC-------TATTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTAT---AATCAAATCACGTGAC----------TCTCGGGGAA--GTACGATATT---TTAA-AAATAACCAC--TATAGCGGAAGAATAGGCTTTAAGTCTCT-ATGTA-T--TATGTCTCTGcaactgttaaataatagtgggtggggaatgggttgatttcagcactaagtgtttttgaatcttgattcccaagaaaagtcataagtgacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|7 : tctctgattcacctaatacatgatgacagtAAAAAAACCCAAC----T-TAA----A-----------TCCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATG-AAAA--AAAAAAAAAAAAAAAAACATA-CAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAACTGTAAGAGAATAGTGGGTGGGGAATGGGTTGATTTCAACACTTATGAC-TTTTCA-----T-GCGAATCAAGATTCAAAAATACTAACAATCAATCTAATAGACTAAA-TAAAGAAAATTATGAAAAAT-ATAATTAAAAAAAATACTAACAATTTCTC-------TATTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAAT
gi|10 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtAAAAAAAT--AACCTATTACAATCACAACTGACATTTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|3 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctAC--AAC----TGCA--------------TTTTTCAAA-------AGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTC
gi|1 : aataatcttttacaatcAC--AAC----TG--A----CATT------TTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|1 : ataatctattacaatcAAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG-AAAAAAAATAATAAAAGAACA---CAA-CAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAACTGTTAAAGAATAGCGGGTGGGGAATGGGTTGATTTCAGCACTTAAGAC-TTTTT------TGGGGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAAA-TAAAGAAAATTATG-AAAAT-ATAATTAAAAAAGATACTTACAATTTCTT-------TATTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTAT---TATCATAT----TAAC-GTT--------------AT--GTACGTTATT---TTAA-AAATAGCCAC--ATTAGCAGAAGAACAGGCTTCGAGTCTC---TGTAAC--TATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|3 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtagatatcagaataaaaatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG-AAAA--AAAAAAAAAATAATA---ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAACTGTTAAAGAATAGTGGGTGGGGAATGGGTT-AT----G-ACTT-TT-C-----T------T-GGGAATCAAGATTCAAAAACACTAACAATCAATCTATTACACTAAA-TAAAGAAAATTATG-AAAAT-ATAATTTAAAAAAATACTTAA------------------TTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTGTTTT--T-CAATATGGCC-GACAATGATGCTAT---AATCGAATCACGTGACACTCTGCATTTCTTGGGGAT--GTACGTTATT---TTTA-GAATAGCCAC--TATAGCGGAAGAACAGGCTTCGAGTCTC---TGTA-T--TATGTCTCTG
gi|6 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGCA-TCATTCAACATACTAATTA--TAATGATAATGAAAAA--AATATTAAAAAAATA---TAA-CAGC-GGAAAATGTTTTTGTAAGTTTAATGAACAACTGTTAAATAATAGTGGGTGGGGAATGGGTTGATTTCAGCACT
gi|8 : taaattaaacaGAATAATGGACAGGGAAAGTGTTTATTTCAACATTTGTGACTATTCT------T-GAGAATCAGCATTCAAAGACACTCGAAATCGATTTGGTATACTAAAATATAGAAAAC---A-AAAAT---AA--AACAAATATATTCGAAATATGTCCCGATTTTATTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATG-TTTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAAT---AATTTGATCACGTGA----------TTCTCGGA-----GTGCGTGCTTGCGTTTATAAATAACTAC--TACTGCAGTAGAA-GGACCT---GTCTCTGCTAT-----TATGTCACTGaagtgtttttgaatcttgattcccaagaaaagtcataagtgacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|6 : acattaatttccaaccatgtcCACTTATGAC-TTTTC------TTGGGAATCAAGATTCAAAAACACTt
gi|6 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaACTTATGAC-TTTTC------TTGGGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAAA-TAAAGAAAATTATG-AAAATATTA--TAAAAAGAATACTAACAATTCCTC-------TATTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTATTTTT---CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCGGGATTTCTCGGGGAT--GTACGATATT---TTAA-AAATAGCCAC--TATAGCGGAAGAACAGGCTTCAAGTCTCT-GTGTA-T--TATGTCTCTGacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|17 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaagtgtttttgaatcttgattcccaagaaaagtcataagtgGAATCAACATTCAAAAACACTTAAAATCGATTTAGTATACTAA
gi|11 : tttgcattcaacccaaatattggacagggacagtgtttaattcaacatttgtgaatattcttca-------TATTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGCTCC-TATT--TATTTT-TAA-ATGGCCTGACGATGACGCTAT---CATTTGATCATGTGACT-CCAGGA--GGTCAGGCTT--GT--GTTTAT--------AAATAGCTAC--TTTAGAGAAAGAA-AGACCT---GTC-----TGT--C--TCTGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTAT---AATCGAATCACATGACTCTCAAGATTTCTCGGGGAT--GTACTTTATT---TTAA-AAATAGCCAC--TATAGCGGAAGAACAGGCTACTAGTCTC---TGTA-T--TATGTCTCTGtattaagttac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTAT---AATTTGACCATGTGG----------TTCTCGTAGGTCAGCATG-TGAT---TATA-AAA-AGCTAC--TATAACAGATGAAAGGGCTGCGGGTCTC---TGC--CATTAAGTCACTG
gi|16 : tGATGACGCTAT---GATCGAATCACGTGACTCTCGGGATTTCTCGGGGAT--GTACGATATT---TGAA-AAATAGCCACTATATAGCGGAAGAATTAGCTTCAAGTCTCT-GTGTA-T--TATGTTTCTGgt
gi|19 : -AAATAGCTAC--TTTAGTGGAAGAATGACCTGTCTGTCTCTGTTGT-----TAAGTCACTGc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAAAAAAGTTTCTATACTAATTTACAACCGTGCCGAATGATGCACGGGGTACATGTCTATTTCAACATTTATAATTAGTCTTGCCGGAGAATCAGTATTCAAAACACTCTAAATAAAAAGATAAAACAACTATATGTGAAATATACGCCAACTACTTTACTCTTTCAAAAACATGT
Unaligned ( gi|14 ): AAATTTATTCACATTAACTTACAACCATGCTGAATAATGGGAAAGTGTTTATTTCAACATTAGTGATTATTCTTGAGAATCAGCATTCAAAAACGCTGGAAATTGAGTATACTAAGATATAGACAA
Unaligned ( gi|15 ): TATATATGTTCAGGTTGGTAACGATGACACCATGATTTGATCACGCGATGCTTGGAGCAAGTGCTTGCATTTATAAATTGCTATTATAGCGGGAGAAGGACCTGCCTATTTCTTATCAAGTCATTG
Unaligned ( gi|18 ): GTGAAAACTGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTGCGTCAGGAATTACGAATGTTTCTCGTGGAATC
Unaligned ( gi|20 ): GATAATTGGATCACGTGATTCTTGGAGTGCATG
Alignments
lowQualScore : 11 33333333333 1 333 1 333333 2222 11 55555555 111 1111 1111111 22222222222222222 11111111111 1111111 44444444444444444444444 11111111 1 2222222222222 11
lowQualScore : 22 8 99999999999 6 6 4 111 1 3 6 5 6 222222 4 6 4 0000 22 88888888 4 2 1 1 6 1 1 4 5 77 77 66 1 000 55 1 0 555 0 3 0000 9999999 3 55 7777 666 2 55555555555555555 666 77777777777 3 4 5 4 4 777 999999 1 5 1 3333333 4 22222222222222222222222 55 4 66666666 9999 1 5 3 2 4 555 0 4444444444444 22 3 5 44 55 6 66 3 33 3
lowQualScore : .. . ........... . . . ... . . . . . ...... . . . .... .. ........ . . . . . . . . . .. .. .. . ... .. . . ... . . .... ....... . .. .... ... . ................. ... ........... . . . . . ... ...... . . . ....... . ....................... .. . ........ .... . . . . . ... . ............. .. . . .. .. . .. . .. .
lowQualScore : 00 3 00000000000 0 0 5 222 0 2 0 0 0 555555 0 0 0 0000 11 00000000 3 1 0 9 7 7 9 3 7 99 99 11 0 000 55 1 1 888 4 3 4444 9999999 3 00 7777 444 7 55555555555555555 444 33333333333 6 0 1 4 4 888 666666 3 3 1 0000000 0 11111111111111111111111 55 4 11111111 4444 6 5 6 3 0 444 2 6666666666666 00 3 4 22 88 2 88 3 22 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGTAAAAAAA-C-AACTTAAATGTAATACCGAAATNAANGTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAG-AAAAAAAAACAACTG-CAAA--T---TTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG-AAAAAA--TAAT--AAAAAAAC-ATA---ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATT--CAAAAA----CAC---TAAC-----------------AATCGA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Reference ( family-3986 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCGAAATAAAAATTTCTGCACTCGTTCAACGCACCTAATACATAATGATAATGAAAAAA---AANTTAAATATAACAGCGGAA-AAATGTTTTTGTAAGTTTAATGAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAACAACTG-CAAAATT---TTTTCCAAATCATNAAAGTCGACACTTCTAGTAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG-AAAAAA--TAAT--AAAAAAAC-ANA---ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATT--CAAAAA----CAC---TAAC-----------------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTNAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
gi|1 : ACAACTGACA----T---TTTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTC
gi|1 : ataatctattacaatcAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG-AAAAAAAATAAT--AAAAGAAC-ACA---ACAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGCGGGTGGGG---AATGGGTTGATTTCAGCACTTA-AGACT----TTTT-T-G-G-GGAATCAAGATT--CAAAAA----CAC---TAAC-----------------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAGATACTTACAATTTCTT-------TA-TTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTA---TTATCATAT----TAAC---------GTT--------ATGTACGTTAT-TTTAAAAATAGCCAC--ATTAGCAGAAGAACAGGCT-TCGAGTCT-C--TGTAACTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|10 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtagatatcagaataaaaatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaACAACTGACA----T---TTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|11 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctaaaaaaataacctattacaatc-------TA-TTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGC-TCCTATT--TATTTT-TAA-ATGGCCTGACGATGACGCTA---TCATTTGATCATGTGACTCCA-G-G-A--GGTCAGGCTTGTGT-TTAT------AAATAGCTAC--TTTAGAGAAAGAAAGACCTGTCT-GTCT-CT-GTT-ATTAAGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTA---TAATCGAATCACATGACTCTC-AAG-ATTTCTCGGGGATGTACTTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-ACTAGTCT-C--TGT-ATTATGTCTCTGtac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTA---TAATTTGACCATGTGGTTCTC-G--------TAGGTCA-GCATGTGAT-TATAAAA--AGCTAC--TATAACAGATGAAAGGGCT-GCGGGTCT-CT-GCC-ATTAAGTCACTG
gi|14 : tACAACCATGCT---GAATAATGGG--------AAAGTGTTTATTTCAACATTAG-TGATT----ATTC-TTG-A-G-AATCAGCATT--CAAAAA----CGC---TGGA-----------------AATTG-------AGTATACTA-----------AGA-TATAGACAAgt
gi|15 : aaatttattcacattaacttACGATGACACCA---TGATTTGATCACGCGATGCTT-G-G-A--------GCAAGTGC-TTGCATTTATAAATTGCTAT--TATAGCGGGAGAA-GGACC-T
gi|16 : tatatatgttcaggttggtaGATGACGCTA---TGATCGAATCACGTGACTCTC-G-GGATTTCTCGGGGATGTACGATAT-TTGAAAAATAGCCACTATATAGCGGAAGAATTAGCT-TCAAGTCT-CTGTGT-ATTATGTTTCTGgcctatttcttatcaagtcattg
gi|17 : AATATTGGACAGGG---ACAGTGTTTAATTCAACATTTG-TGAAT----ATTC-T-TCA-G-AATCAACATT--CAAAAA----CAC---TTAA-----------------AATCGA---TTTAGTATACTA-----------A-c
gi|18 : tttgcattcaacccaTGAA-AAC--TGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTG-CGTCAGGAATTA-CGAATG---TTTC-TCGTG-G-AATC
gi|19 : gAAATAGCTAC--TTTAGTGGAAGAATGACCTGTCT-GTCT-CT-GTT-GTTAAGTCACTG
gi|2 : cAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACCTAATACACGATGATAGTAAAAAAA---AACTTAAATATAATACCGAAA-TAAAGTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG----AAAAAAAAACAACTG-CAAAATTGTCTTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG-AAAAAA--TAAT--AAAAAAAT-ATT---ACAGCAGAAAAATGTTTTTATAAGTTTAATGAACAAC--TGTTAAAGAATAGTTGGCGTGG---AATGGGTTGATCTCAGCACTTA-TTACA----TAAC-T-G-G-G-AATCAAGATT--CAAAAA----CAC---TAAC-----------------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TTT---AAT----TAAAAAAAATACTTAAAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTGTCGG-G-ATTTCTCGGGGATGTACGTTTT-TTTTAAAATAGCCAC--TACAGCGGAGGAACAGGCT-TCCAGTCTCCT-TGT--CTATGTCTCTG
gi|20 : ttttcaaacttaccagtgtcatgtgtcaattcatA---TAATTGGATCACGTGATTCTT-G-G-A
gi|3 : gACAACTG-CA----T---TTTTC--------AAAAGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTCgtgcatg
gi|3 : aataatcttttacaatcAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG-AAAAAA--AAAA--AAAATAATAATA---ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGG-------------TTA-TGACT----TTTCTT-G-G-G-AATCAAGATT--CAAAAA----CAC---TAAC-----------------AATCAA---TCTATTACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TTAAAAAAATACT------------------TA-ATTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTG--TTTTT-CAATATGGCC-GACAATGATGCTA---TAATCGAATCACGTGACACTCTG-C-ATTTCTTGGGGATGTACGTTAT-TTTTAGAATAGCCAC--TATAGCGGAAGAACAGGCT-TCGAGTCT-C--TGT-ATTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|4 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGACGGTAGT-AAAAAA---AATTTAA-TGTAATACCGAAATAAAC-TTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAACAACTG-CAAAATTGTCTTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT-AAAAAA--TAAT--AAAAAAAC-ATA---ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAAC--TGTTAAAGAATAGTGGGTGGGG---AATAGGTTGATTTCAGCACTTG-TGACT----TTTCTT-G-G-G-AATCAAGATT--CAAAAA----CAA---TAAC-----------------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----T--AAAATTTTTTTAAAATTTCTA-------TA-CTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTA---TAATCGAATCACGTGAC------------TCTCGGGGATGTGTGTTAT-TTT-AAAATAGCCAC--TATAGCGGAAGAACAAGGT-TCGAGTCT--T-TGT-ATTATGTTTCT
gi|5 : CACCTAATACATGATGACAGTAAAAAAAAC-AACTTCAAT
gi|5 : tctctgattAAAAAAAACAACTT-CAA----------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG--AAAAA--TAATAAAAAAAAAC-ATA---ACAGC-GAAAAATTTTTTTGTAAATTTAATGAACAAC--TGTATAAGAATAGTGGTTGGGG---AATTGGTTGATTTCAGCAC-TA-TAACT----TTTCTT-G-G-G-AACCAAGACT--CAAAAA----CAC---TAAC-----------------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATAATG-AAAA-TAT---CAT----T-AAAAAAATACTAACAATTTCAC-------TA-TTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTA---TAATCAAATCACGTGAC------------TCTCGGGGAAGTACGATAT-TTTAAAAATAACCAC--TATAGCGGAAGAATAGGCT-TTAAGTCT-CTATGT-ATTATGTCTCTGccaaatcataaaagtcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|6 : tctctgattcacctaatacatgatgacagtTGCA-TCATTCAACATACTAATTA--TAATGATAATGAAAAAAA--TATT--AAAAAAAT-ATA---ACAGCGG-AAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAATAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTAAGTG-TT----TTT--------G-AATCTTGATTCCCAAGAAAAGTCATAAGTGACTTATGACTTTTCTTGGGAATCAAGATTCAAAAACACTAACAATCAATCTA-A-TACACTAAATAAAG-AAAATTATGAAAATATTATAAAAAGAATACTAACAATTCCTC-------TA-TTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTA--TTTTT-CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCGG-G-ATTTCTCGGGGATGTACGATAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-TCAAGTCT-CTGTGT-ATTATGTCTCTG
gi|7 : taaattaaacaGATATCAGAATAAAAATTTCTGCA--------ATGCACCTAATACATGATGACAGTAAAAAAACCCAACTTAAAT
gi|7 : AGTAAAAAAACCCAACT--TAAA---------TCCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATG-AAAAAA--AAAA--AAAAAAAA-AAACATACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTAAGAGAATAGTGGGTGGGG---AATGGGTTGATTTCAACACTTA-TGACT----TTTCAT-G-C-G-AATCAAGATT--CAAAAA----TAC---TAAC-----------------AATCAA---TCTAATAGACTA-----------A-A-TAAAGAAAATTATGAAAAA-TAT---AAT----TAAAAAAAATACTAACAATTTCTC-------TA-TTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAATccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|8 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacGAATAATGGACAGGG---AAAGTGTTTATTTCAACATTTG-TGACT----ATTC-TTG-A-G-AATCAGCATT--CAAAGA----CAC---TCGA-----------------AATCGA---TTTGGTATACTA-----------A-AATATAGAAAAC-----AAAA--AT---AA------AACAAATATATTCGAAATATGTCCCGATTTTA-TTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATGT-TTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAA---TAATTTGATCACGTGATTCTC-G-G-AGTGC---GTGCT-TGCG-----TTTATAAATAACTAC--TACTGCAGTAGAA-GGACC-T---GTCT-CT-GCT-ATTATGTCACTG
gi|9 : acattaatttccaaccatgtcAAAAAAGTTTCTATA---CTAATTTACAAC--CGT-GCCGAATGATGCACGGGG---TACATGTCTATTTCAACATTTA-TAATTAGTCTTGC-C-G-GAG-AATCAGTATT--CA-AAA----CAC---T--------------------------------------CTA-----------A-A-TAAA-AAGATAAAA-CAAC-TAT---A------TGTGAAATATAC-GCCAACTACTT-------TACTCTTT-------------------C---AAAA--At
Alignments
lowQualScore : 1 222 1 11 22 1 333333333 1111 111 1111111 44444444444444444444444 11111111 1 2222222222222 11
lowQualScore : 6 0 888 3 2 88 1 00 1 1 5 5 77 77 555555555 4 2 1 6 1 4 7777 77 77 5 1 55 1 3 555 0 2 8888 999 5 2 2 1 2 3 4 2 4 4 6 1 5 1 3333333 4 22222222222222222222222 55 4 66666666 9999 1 5 3 2 4 555 00 4444444444444 3 3 44 55 6 66 3 33 3
lowQualScore : . . ... . . .. . .. . . . . .. .. ......... . . . . . . .... .. .. . . .. . . ... . . .... ... . . . . . . . . . . . . . . ....... . ....................... .. . ........ .... . . . . . ... .. ............. . . .. .. . .. . .. .
lowQualScore : 7 0 888 2 0 33 0 77 0 0 0 7 99 33 000000000 3 1 9 7 9 3 9999 99 99 7 7 55 1 5 888 4 9 9999 555 7 9 9 4 5 6 0 2 4 6 4 3 3 1 0000000 0 11111111111111111111111 55 4 11111111 4444 6 5 6 3 0 444 77 6666666666666 6 3 22 88 2 88 3 22 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAA--ATAAA-GTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Reference ( family-3986 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAA--ATNAANGTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
gi|1 : A-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTC
gi|1 : ataatctattacaatcAAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG----AAAAAAAATAAT--AAAAGAAC-ACAACAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGCGGGTGGGG---AATGGGTTGATTTCAGCACTTA-AGACT----TTTT-T-G-G-GGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAGATACTTACAATTTCTT-------TA-TTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTA---TTATCATAT----TAAC---------GTT--------ATGTACGTTAT-TTTAAAAATAGCCAC--ATTAGCAGAAGAACAGGCT-TCGAGTCT-C--TGTAACTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|10 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtagatatcagaataaaaatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|11 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctaaaaaaataacctattacaatc-------TA-TTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGC-TCCTATT--TATTTT-TAA-ATGGCCTGACGATGACGCTA---TCATTTGATCATGTGACTCCA-G-G-A--GGTCAGGCTTGTG-------TTTATAAATAGCTAC--TTTAGAGAAAGAAAGACCTGTCT-GTCT-CT-GTT-ATTAAGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTA---TAATCGAATCACATGACTCTC-AAG-ATTTCTCGGGGATGTACTTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-ACTAGTCT-C--TGT-ATTATGTCTCTGtac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTA---TAATTTGACCATGTGGTTCTC-G--------TAGGTCA-GCATGTGAT-TATAAAA--AGCTAC--TATAACAGATGAAAGGGCT-GCGGGTCT-CT-GCC-ATTAAGTCACTG
gi|14 : tACAACCATGCT---GAATAATGGG--------AAAGTGTTTATTTCAACATTAG-TGATT----ATTC-TTG-A-G-AATCAGCATTCAAAAACGCTGGAAATTG----AGTATACTAAGA-TATAGACAAgt
gi|15 : aaatttattcacattaacttACGATGACACCA---TGATTTGATCACGCGATGCTT-G-G-A--------GCAAGTGC-TTGCATTTATAAATTGCTAT--TATAGCGGGAGAA-GGACC-T
gi|16 : tatatatgttcaggttggtaGATGACGCTA---TGATCGAATCACGTGACTCTC-G-GGATTTCTCGGGGATGTACGATAT-TTGAAAAATAGCCACTATATAGCGGAAGAATTAGCT-TCAAGTCT-CTGTGT-ATTATGTTTCTGgcctatttcttatcaagtcattg
gi|17 : AATATTGGACAGGG---ACAGTGTTTAATTCAACATTTG-TGAAT----ATTC-T-TCA-G-AATCAACATTCAAAAACACTTAAAATCGATTTAGTATACTAA-c
gi|18 : tttgcattcaacccaTGAA-AAC--TGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTG-CGTCAGGAATTA-CGAATG---TTTC-TCGTG-G-AATC
gi|19 : gAAATAGCTAC--TTTAGTGGAAGAATGACCTGTCT-GTCT-CT-GTT-GTTAAGTCACTG
gi|2 : cAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACCTAATACACGATGATAGT-AAAAAAA---AACTTAAATATAATACCGAA--ATAAA-GTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG---AAAAAAAAA-C--AACTGCAAAATTGTCTTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG----AAAAAA--TAAT--AAAAAAAT-ATTACAGCAGAAAAATGTTTTTATAAGTTTAATGAACAAC--TGTTAAAGAATAGTTGGCGTGG---AATGGGTTGATCTCAGCACTTA-TTACA----TAAC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATTTAATTAAAAAAAATACTTAAAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTGTCGG-G-ATTTCTCGGGGATGTACGTTTT-TTTTAAAATAGCCAC--TACAGCGGAGGAACAGGCT-TCCAGTCTCCT-TGT--CTATGTCTCTG
gi|20 : ttttcaaacttaccagtgtcatgtgtcaattcatA---TAATTGGATCACGTGATTCTT-G-G-A
gi|3 : gA-C--AACTGCA-------TTTTTC--------AAAAGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTCgtgcatg
gi|3 : aataatcttttacaatcAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG----AAAAAA--AAAA--AAAATAATAATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGG-------------TTA-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTATTACACTAA-A-TAAAGAAAATTATG-AAAATATAATTTAAAAAAATACT------------------TA-ATTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTG--TTTTT-CAATATGGCC-GACAATGATGCTA---TAATCGAATCACGTGACACTCTG-C-ATTTCTTGGGGATGTACGTTAT-TTTTAGAATAGCCAC--TATAGCGGAAGAACAGGCT-TCGAGTCT-C--TGT-ATTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|4 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGACGGTAGT-AAAAAAA----ATTTAA-TGTAATACCGAA--ATAAAC-TTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAAC--AACTGCAAAATTGTCTTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAAC--TGTTAAAGAATAGTGGGTGGGG---AATAGGTTGATTTCAGCACTTG-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACAATAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATT--AAAATTTTTTTAAAATTTCTA-------TA-CTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTA---TAATCGAATCACGTGAC------------TCTCGGGGATGTGTGTTAT-TTT-AAAATAGCCAC--TATAGCGGAAGAACAAGGT-TCGAGTCT--T-TGT-ATTATGTTTCT
gi|5 : ATTCACCTAATACATGATGACAGTAAAAAAAA--CAACTTCAAT------CCAAATCATAAAAGT
gi|5 : tctctgAGTAAAAAAAA-C--AACTTCAA----------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG-----AAAAA--TAATAAAAAAAAAC-ATAACAGC-GAAAAATTTTTTTGTAAATTTAATGAACAAC--TGTATAAGAATAGTGGTTGGGG---AATTGGTTGATTTCAGCAC-TA-TAACT----TTTCTT-G-G-G-AACCAAGACTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATAATG-AAAATATCATT-AAAAAAATACTAACAATTTCAC-------TA-TTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTA---TAATCAAATCACGTGAC------------TCTCGGGGAAGTACGATAT-TTTAAAAATAACCAC--TATAGCGGAAGAATAGGCT-TTAAGTCT-CTATGT-ATTATGTCTCTGcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|6 : tctctgattcacctaatacatgatgacTGCA-TCATTCAACATACTAATTA--TAATGATAATGA---AAAAAA--TATT--AAAAAAAT-ATAACAGCGG-AAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAATAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTAAGTG-TT----TTT--------G-AATCTTGATTC
gi|6 : taaattaaacaCACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTccaagaaaagtcataagtgacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|6 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATTA-TAAAAAGAATACTAACAATTCCTC-------TA-TTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTA--TTTTT-CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCGG-G-ATTTCTCGGGGATGTACGATAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-TCAAGTCT-CTGTGT-ATTATGTCTCTGacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|7 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaagtgtttttgaatcttgattcccaagaaaagtcataagtgGATATCAGAATAAAAATTTCTGCA--------ATGCACCTAATACATGATGACAGT-AAAAAAACCCAACTTAAAT
gi|7 : AAAAAAA-CCCAACT-TAAA-----T----CCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATGAAAAAAAAAA--AAAA--AAAAAAAC-AT-ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTAAGAGAATAGTGGGTGGGG---AATGGGTTGATTTCAACACTTA-TGACT----TTTCAT-G-C-G-AATCAAGATTCAAAAATACTAACAATCAATCTAATAGACTAA-A-TAAAGAAAATTATGAAAAATATAATTAAAAAAAATACTAACAATTTCTC-------TA-TTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAATccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|8 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtGAATAATGGACAGGG---AAAGTGTTTATTTCAACATTTG-TGACT----ATTC-TTG-A-G-AATCAGCATTCAAAGACACTCGAAATCGATTTGGTATACTAA-AATATAGAAAAC-----AAAA-ATAA--AACAAATATATTCGAAATATGTCCCGATTTTA-TTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATGT-TTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAA---TAATTTGATCACGTGATTCTC-G-G-AGTGC---GTGCT-TGCG-----TTTATAAATAACTAC--TACTGCAGTAGAA-GGACC-T---GTCT-CT-GCT-ATTATGTCACTG
gi|9 : acattaatttccaaccatgtcAAAAAAGTTTCTATA---CTAATTTACAAC--CGT-GCCGAATGATGCACGGGG---TACATGTCTATTTCAACATTTA-TAATTAGTCTTGC-C-G-GAG-AATCAGTATTCA-AAACACT------------------CTAA-A-TAAA-AAGATAAAA-CAACTATA--TGTGAAATATAC-GCCAACTACTT-------TACTCTTT-------------------C---AAAA--At
Alignments
lowQualScore : 222 1 333333333 1111 111 1111111 44444444444444444444444 11111111 1 2222222222222 11
lowQualScore : 4 2 8 333 2 2 1 1 0 5 66 66 111111111 3 2 1 6 1 4 7777 77 77 5 1 55 1 3 555 0 2 8888 999 5 2 2 1 2 3 4 2 4 4 6 1 5 1 3333333 4 22222222222222222222222 55 4 66666666 9999 1 5 3 2 4 555 00 4444444444444 3 3 44 55 6 66 3 33 3
lowQualScore : . . . ... . . . . . . .. .. ......... . . . . . . .... .. .. . . .. . . ... . . .... ... . . . . . . . . . . . . . . ....... . ....................... .. . ........ .... . . . . . ... .. ............. . . .. .. . .. . .. .
lowQualScore : 0 5 0 222 8 0 0 0 3 0 99 66 111111111 9 0 9 7 9 3 9999 99 99 7 7 55 1 5 888 4 9 9999 555 7 9 9 4 5 6 0 2 4 6 4 3 3 1 0000000 0 11111111111111111111111 55 4 11111111 4444 6 5 6 3 0 444 77 6666666666666 6 3 22 88 2 88 3 22 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Reference ( family-3986 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAAGTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
gi|1 : A-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTC
gi|1 : ataatctattacaatcAGATATCAGAATAAAAATTTCTGCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNNNNNNN-----NNNNNNNNNNNNNNAAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG----AAAAAAAATAAT--AAAAGAAC-ACAACAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGCGGGTGGGG---AATGGGTTGATTTCAGCACTTA-AGACT----TTTT-T-G-G-GGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAGATACTTACAATTTCTT-------TA-TTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTA---TTATCATAT----TAAC---------GTT--------ATGTACGTTAT-TTTAAAAATAGCCAC--ATTAGCAGAAGAACAGGCT-TCGAGTCT-C--TGTAACTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|10 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtA-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|11 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctaaaaaaataacctattacaatc-------TA-TTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGC-TCCTATT--TATTTT-TAA-ATGGCCTGACGATGACGCTA---TCATTTGATCATGTGACTCCA-G-G-A--GGTCAGGCTTGTG-------TTTATAAATAGCTAC--TTTAGAGAAAGAAAGACCTGTCT-GTCT-CT-GTT-ATTAAGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTA---TAATCGAATCACATGACTCTC-AAG-ATTTCTCGGGGATGTACTTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-ACTAGTCT-C--TGT-ATTATGTCTCTGtac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTA---TAATTTGACCATGTGGTTCTC-G--------TAGGTCA-GCATGTGAT-TATAAAA--AGCTAC--TATAACAGATGAAAGGGCT-GCGGGTCT-CT-GCC-ATTAAGTCACTG
gi|14 : tACAACCATGCT---GAATAATGGG--------AAAGTGTTTATTTCAACATTAG-TGATT----ATTC-TTG-A-G-AATCAGCATTCAAAAACGCTGGAAATTG----AGTATACTAAGA-TATAGACAAgt
gi|15 : aaatttattcacattaacttACGATGACACCA---TGATTTGATCACGCGATGCTT-G-G-A--------GCAAGTGC-TTGCATTTATAAATTGCTAT--TATAGCGGGAGAA-GGACC-T
gi|16 : tatatatgttcaggttggtaGATGACGCTA---TGATCGAATCACGTGACTCTC-G-GGATTTCTCGGGGATGTACGATAT-TTGAAAAATAGCCACTATATAGCGGAAGAATTAGCT-TCAAGTCT-CTGTGT-ATTATGTTTCTGgcctatttcttatcaagtcattg
gi|17 : AATATTGGACAGGG---ACAGTGTTTAATTCAACATTTG-TGAAT----ATTC-T-TCA-G-AATCAACATTCAAAAACACTTAAAATCGATTTAGTATACTAA-c
gi|18 : tttgcattcaacccaTGAA-AAC--TGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTG-CGTCAGGAATTA-CGAATG---TTTC-TCGTG-G-AATC
gi|19 : gAAATAGCTAC--TTTAGTGGAAGAATGACCTGTCT-GTCT-CT-GTT-GTTAAGTCACTG
gi|2 : cAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACCTAATACACGATGATAGT-AAAAAAA---AACTTAAATATAATACCGAAATAAAGTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG---AAAAAAAAA-C--AACTGCAAAATTGTCTTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG----AAAAAA--TAAT--AAAAAAAT-ATTACAGCAGAAAAATGTTTTTATAAGTTTAATGAACAAC--TGTTAAAGAATAGTTGGCGTGG---AATGGGTTGATCTCAGCACTTA-TTACA----TAAC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATTTAATTAAAAAAAATACTTAAAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTGTCGG-G-ATTTCTCGGGGATGTACGTTTT-TTTTAAAATAGCCAC--TACAGCGGAGGAACAGGCT-TCCAGTCTCCT-TGT--CTATGTCTCTG
gi|20 : ttttcaaacttaccagtgtcatgtgtcaattcatA---TAATTGGATCACGTGATTCTT-G-G-A
gi|3 : gA-C--AACTGCA-------TTTTTC--------AAAAGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTCgtgcatg
gi|3 : aataatcttttacaatcAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG----AAAAAA--AAAA--AAAATAATAATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGG-------------TTA-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTATTACACTAA-A-TAAAGAAAATTATG-AAAATATAATTTAAAAAAATACT------------------TA-ATTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTG--TTTTT-CAATATGGCC-GACAATGATGCTA---TAATCGAATCACGTGACACTCTG-C-ATTTCTTGGGGATGTACGTTAT-TTTTAGAATAGCCAC--TATAGCGGAAGAACAGGCT-TCGAGTCT-C--TGT-ATTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|4 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGACGGTAGT-AAAAAAA----ATTTAA-TGTAATACCGAAATAAACTTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAAC--AACTGCAAAATTGTCTTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAAC--TGTTAAAGAATAGTGGGTGGGG---AATAGGTTGATTTCAGCACTTG-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACAATAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATT--AAAATTTTTTTAAAATTTCTA-------TA-CTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTA---TAATCGAATCACGTGAC------------TCTCGGGGATGTGTGTTAT-TTT-AAAATAGCCAC--TATAGCGGAAGAACAAGGT-TCGAGTCT--T-TGT-ATTATGTTTCT
gi|5 : ATTCACCTAATACATGATGACAGTAAAAAAAA--CAACTTCAAT
gi|5 : tctctgAGTAAAAAAAA-C--AACTTCAA----------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG-----AAAAA--TAATAAAAAAAAAC-ATAACAGC-GAAAAATTTTTTTGTAAATTTAATGAACAAC--TGTATAAGAATAGTGGTTGGGG---AATTGGTTGATTTCAGCAC-TA-TAACT----TTTCTT-G-G-G-AACCAAGACTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATAATG-AAAATATCATT-AAAAAAATACTAACAATTTCAC-------TA-TTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTA---TAATCAAATCACGTGAC------------TCTCGGGGAAGTACGATAT-TTTAAAAATAACCAC--TATAGCGGAAGAATAGGCT-TTAAGTCT-CTATGT-ATTATGTCTCTGccaaatcataaaagtcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|6 : tctctgattcacctaatacatgatgacTGCA-TCATTCAACATACTAATTA--TAATGATAATGA---AAAAAA--TATT--AAAAAAAT-ATAACAGCGG-AAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAATAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTAAGTG-TT----TTT--------G-AATCTTGATTC
gi|6 : taaattaaacaCACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTccaagaaaagtcataagtgacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|6 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATTA-TAAAAAGAATACTAACAATTCCTC-------TA-TTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTA--TTTTT-CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCGG-G-ATTTCTCGGGGATGTACGATAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-TCAAGTCT-CTGTGT-ATTATGTCTCTGacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|7 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaagtgtttttgaatcttgattcccaagaaaagtcataagtgGATATCAGAATAAAAATTTCTGCA--------ATGCACCTAATACATGATGACAGT-AAAAAAACCCAACTTAAAT
gi|7 : AAAAAAA-CCCAACT-TAAA-----T----CCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATGAAAAAAAAAA--AAAA--AAAAAAAC-AT-ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTAAGAGAATAGTGGGTGGGG---AATGGGTTGATTTCAACACTTA-TGACT----TTTCAT-G-C-G-AATCAAGATTCAAAAATACTAACAATCAATCTAATAGACTAA-A-TAAAGAAAATTATGAAAAATATAATTAAAAAAAATACTAACAATTTCTC-------TA-TTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAATccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|8 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtGAATAATGGACAGGG---AAAGTGTTTATTTCAACATTTG-TGACT----ATTC-TTG-A-G-AATCAGCATTCAAAGACACTCGAAATCGATTTGGTATACTAA-AATATAGAAAAC-----AAAA-ATAA--AACAAATATATTCGAAATATGTCCCGATTTTA-TTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATGT-TTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAA---TAATTTGATCACGTGATTCTC-G-G-AGTGC---GTGCT-TGCG-----TTTATAAATAACTAC--TACTGCAGTAGAA-GGACC-T---GTCT-CT-GCT-ATTATGTCACTG
gi|9 : acattaatttccaaccatgtcAAAAAAGTTTCTATA---CTAATTTACAAC--CGT-GCCGAATGATGCACGGGG---TACATGTCTATTTCAACATTTA-TAATTAGTCTTGC-C-G-GAG-AATCAGTATTCA-AAACACT------------------CTAA-A-TAAA-AAGATAAAA-CAACTATA--TGTGAAATATAC-GCCAACTACTT-------TACTCTTT-------------------C---AAAA--At
Alignments
lowQualScore : 222 1 333333333 1111 111 1111111 44444444444444444444444 11111111 1 2222222222222 11
lowQualScore : 1 2 8 333 2 1 1 1 0 5 66 66 111111111 3 2 1 6 1 4 7777 77 77 5 1 55 1 3 555 0 2 8888 999 5 2 2 1 2 3 4 2 4 4 6 1 5 1 3333333 4 22222222222222222222222 55 4 66666666 9999 1 5 3 2 4 555 00 4444444444444 3 3 44 55 6 66 3 33 3
lowQualScore : . . . ... . . . . . . .. .. ......... . . . . . . .... .. .. . . .. . . ... . . .... ... . . . . . . . . . . . . . . ....... . ....................... .. . ........ .... . . . . . ... .. ............. . . .. .. . .. . .. .
lowQualScore : 0 5 0 222 8 0 0 0 3 0 99 66 111111111 9 0 9 7 9 3 9999 99 99 7 7 55 1 5 888 4 9 9999 555 7 9 9 4 5 6 0 2 4 6 4 3 3 1 0000000 0 11111111111111111111111 55 4 11111111 4444 6 5 6 3 0 444 77 6666666666666 6 3 22 88 2 88 3 22 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Reference ( family-3986 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
gi|1 : A-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTC
gi|1 : ataatctattacaatcAGATATCAGAATAAAAATTTCTGCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N--NNNNNNNNN-----NNNNNNNNNNNNNNAAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG----AAAAAAAATAAT--AAAAGAAC-ACAACAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGCGGGTGGGG---AATGGGTTGATTTCAGCACTTA-AGACT----TTTT-T-G-G-GGAATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAGATACTTACAATTTCTT-------TA-TTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTA---TTATCATAT----TAAC---------GTT--------ATGTACGTTAT-TTTAAAAATAGCCAC--ATTAGCAGAAGAACAGGCT-TCGAGTCT-C--TGTAACTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|10 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtA-C--AACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|11 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctaaaaaaataacctattacaatc-------TA-TTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGC-TCCTATT--TATTTT-TAA-ATGGCCTGACGATGACGCTA---TCATTTGATCATGTGACTCCA-G-G-A--GGTCAGGCTTGTG-------TTTATAAATAGCTAC--TTTAGAGAAAGAAAGACCTGTCT-GTCT-CT-GTT-ATTAAGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTA---TAATCGAATCACATGACTCTC-AAG-ATTTCTCGGGGATGTACTTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-ACTAGTCT-C--TGT-ATTATGTCTCTGtac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTA---TAATTTGACCATGTGGTTCTC-G--------TAGGTCA-GCATGTGAT-TATAAAA--AGCTAC--TATAACAGATGAAAGGGCT-GCGGGTCT-CT-GCC-ATTAAGTCACTG
gi|14 : tACAACCATGCT---GAATAATGGG--------AAAGTGTTTATTTCAACATTAG-TGATT----ATTC-TTG-A-G-AATCAGCATTCAAAAACGCTGGAAATTG----AGTATACTAAGA-TATAGACAAgt
gi|15 : aaatttattcacattaacttACGATGACACCA---TGATTTGATCACGCGATGCTT-G-G-A--------GCAAGTGC-TTGCATTTATAAATTGCTAT--TATAGCGGGAGAA-GGACC-T
gi|16 : tatatatgttcaggttggtaGATGACGCTA---TGATCGAATCACGTGACTCTC-G-GGATTTCTCGGGGATGTACGATAT-TTGAAAAATAGCCACTATATAGCGGAAGAATTAGCT-TCAAGTCT-CTGTGT-ATTATGTTTCTGgcctatttcttatcaagtcattg
gi|17 : AATATTGGACAGGG---ACAGTGTTTAATTCAACATTTG-TGAAT----ATTC-T-TCA-G-AATCAACATTCAAAAACACTTAAAATCGATTTAGTATACTAA-c
gi|18 : tttgcattcaacccaTGAA-AAC--TGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTG-CGTCAGGAATTA-CGAATG---TTTC-TCGTG-G-AATC
gi|19 : gAAATAGCTAC--TTTAGTGGAAGAATGACCTGTCT-GTCT-CT-GTT-GTTAAGTCACTG
gi|2 : cAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACCTAATACACGATGATAGT-AAAAAAA---AACTTAAATATAATACCGAAATAAAGTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG---AAAAAAAAA-C--AACTGCAAAATTGTCTTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG----AAAAAA--TAAT--AAAAAAAT-ATTACAGCAGAAAAATGTTTTTATAAGTTTAATGAACAAC--TGTTAAAGAATAGTTGGCGTGG---AATGGGTTGATCTCAGCACTTA-TTACA----TAAC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATTTAATTAAAAAAAATACTTAAAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTGTCGG-G-ATTTCTCGGGGATGTACGTTTT-TTTTAAAATAGCCAC--TACAGCGGAGGAACAGGCT-TCCAGTCTCCT-TGT--CTATGTCTCTG
gi|20 : ttttcaaacttaccagtgtcatgtgtcaattcatA---TAATTGGATCACGTGATTCTT-G-G-A
gi|3 : gA-C--AACTGCA-------TTTTTC--------AAAAGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTCgtgcatg
gi|3 : aataatcttttacaatcAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG----AAAAAA--AAAA--AAAATAATAATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGG-------------TTA-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTATTACACTAA-A-TAAAGAAAATTATG-AAAATATAATTTAAAAAAATACT------------------TA-ATTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTG--TTTTT-CAATATGGCC-GACAATGATGCTA---TAATCGAATCACGTGACACTCTG-C-ATTTCTTGGGGATGTACGTTAT-TTTTAGAATAGCCAC--TATAGCGGAAGAACAGGCT-TCGAGTCT-C--TGT-ATTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|4 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGACGGTAGT-AAAAAAA----ATTTAA-TGTAATACCGAAATAAACTTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAAC--AACTGCAAAATTGTCTTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAAC--TGTTAAAGAATAGTGGGTGGGG---AATAGGTTGATTTCAGCACTTG-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACAATAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATT--AAAATTTTTTTAAAATTTCTA-------TA-CTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTA---TAATCGAATCACGTGAC------------TCTCGGGGATGTGTGTTAT-TTT-AAAATAGCCAC--TATAGCGGAAGAACAAGGT-TCGAGTCT--T-TGT-ATTATGTTTCT
gi|5 : ATTCACCTAATACATGATGACAGTAAAAAAAA--CAACTTCAAT
gi|5 : tctctgAGTAAAAAAAA-C--AACTTCAA----------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG-----AAAAA--TAATAAAAAAAAAC-ATAACAGC-GAAAAATTTTTTTGTAAATTTAATGAACAAC--TGTATAAGAATAGTGGTTGGGG---AATTGGTTGATTTCAGCAC-TA-TAACT----TTTCTT-G-G-G-AACCAAGACTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATAATG-AAAATATCATT-AAAAAAATACTAACAATTTCAC-------TA-TTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTA---TAATCAAATCACGTGAC------------TCTCGGGGAAGTACGATAT-TTTAAAAATAACCAC--TATAGCGGAAGAATAGGCT-TTAAGTCT-CTATGT-ATTATGTCTCTGccaaatcataaaagtcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|6 : tctctgattcacctaatacatgatgacTGCA-TCATTCAACATACTAATTA--TAATGATAATGA---AAAAAA--TATT--AAAAAAAT-ATAACAGCGG-AAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAATAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTAAGTG-TT----TTT--------G-AATCTTGATTC
gi|6 : taaattaaacaCACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTccaagaaaagtcataagtgacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|6 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaACTTA-TGACT----TTTC-TTG-G-G-AATCAAGATTCAAAAACACTAACAATCAATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATTA-TAAAAAGAATACTAACAATTCCTC-------TA-TTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTA--TTTTT-CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCGG-G-ATTTCTCGGGGATGTACGATAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-TCAAGTCT-CTGTGT-ATTATGTCTCTGacttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatattataaaaagaatactaacaattcctctattttttttgaaaaataaataaagatgatttgccatgtattatttttcaatatggccgacgatgatgctatggtaatcgaatcacgtgactctcgggatttctcggggatgtacgatattttaaaaatagccactatagcggaagaacaggcttcaagtctctgtgtattatgtctctg
gi|7 : taaattaaacatgcatcattcaacatactaattataatgataatgaaaaaaatattaaaaaaatataacagcggaaaatgtttttgtaagtttaatgaacaactgttaaataatagtgggtggggaatgggttgatttcagcactaagtgtttttgaatcttgattcccaagaaaagtcataagtgGATATCAGAATAAAAATTTCTGCA--------ATGCACCTAATACATGATGACAGT-AAAAAAACCCAACTTAAAT
gi|7 : AAAAAAA-CCCAACT-TAAA-----T----CCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATGAAAAAAAAAA--AAAA--AAAAAAAC-AT-ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTAAGAGAATAGTGGGTGGGG---AATGGGTTGATTTCAACACTTA-TGACT----TTTCAT-G-C-G-AATCAAGATTCAAAAATACTAACAATCAATCTAATAGACTAA-A-TAAAGAAAATTATGAAAAATATAATTAAAAAAAATACTAACAATTTCTC-------TA-TTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAATccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|8 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtGAATAATGGACAGGG---AAAGTGTTTATTTCAACATTTG-TGACT----ATTC-TTG-A-G-AATCAGCATTCAAAGACACTCGAAATCGATTTGGTATACTAA-AATATAGAAAAC-----AAAA-ATAA--AACAAATATATTCGAAATATGTCCCGATTTTA-TTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATGT-TTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAA---TAATTTGATCACGTGATTCTC-G-G-AGTGC---GTGCT-TGCG-----TTTATAAATAACTAC--TACTGCAGTAGAA-GGACC-T---GTCT-CT-GCT-ATTATGTCACTG
gi|9 : acattaatttccaaccatgtcAAAAAAGTTTCTATA---CTAATTTACAAC--CGT-GCCGAATGATGCACGGGG---TACATGTCTATTTCAACATTTA-TAATTAGTCTTGC-C-G-GAG-AATCAGTATTCA-AAACACT------------------CTAA-A-TAAA-AAGATAAAA-CAACTATA--TGTGAAATATAC-GCCAACTACTT-------TACTCTTT-------------------C---AAAA--At
blockSeqs : T C A CCC A G T T G A CC NN AAATTGTCT N N A G C C AAAA . AA A T CA T C TAA G AGTC TT C A . G G G A T A T A A T A CCGATTT C GAAAAACATATCGTAATAAC AT . AGTTAAGT TAGT C T A T T TGG TCTCAAGATTT T A TA AG G TA C TG .
blockSeqs : T C . C A C A A . . . GC AAATTGTCT A C A G A C A . . . A . T T . . G TC T . . T G . . T . T T A T A . . CAAA . . . . T T . T . . TCTCGGGATTT T . . CA G GG . TA .
blockSeqs : A . . . A . . GC NNNN C G A G G C . . . . A . T C . . . TT . . . A A . . T . T A T A C . . TTTG . . . . C T . T . . TGTCGGGATTT T . . AG . AA . TG .
blockSeqs : . . . . . GC CATT C T A G A A . . . . A . T T . . . TT . . . A A . . A . T A A A C . . CGA . . . . C T . T . . ACTCTGCATTT A . . TT . CA . T .
blockSeqs : . . TC AAT C T A G G A . . . . A . T T . . . TT . . . A A . . T . T A A A C . . C . . . . C T . T . . TCTCGGGATTT T . . TG . GA . T .
blockSeqs : . . G TT C T A G G . . . . . . . A T . . . TT . . . A A . . T . . G A C A . . C . . . . C . . T . . TCTCGGAGTG T . . CA . GA . T .
blockSeqs : . . T A . . A . G . T T . . . TT . . . A A . . A . . . T G C . . C . . . . C . . T . . TCCAGGAG T . . CA . AA . T .
blockSeqs : . . G . A T . . . AT . . . A A . . . . . . T . . . . C . . . . . . . A . . GCTTGGA A . . CA . AA . T .
blockSeqs : . . C . . . TT . . . C G . . . . C . . . . . . . TCTCG A . . TA . T . T .
blockSeqs : C . . . T . . . . . . . . . . T . . . CA . T . . .
blockSeqs : . . . . T . . . . T . . . G . . . . .
blockSeqs : . . C . . . . . G .
blockSeqs : . . . . . .
blockSeqCons : C** GC ** TT* TCTCGGGATTT** T*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTC-T-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTC-G-G-ATTTCTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAAC--AACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-C--AACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAAAA--TAAT--AAAAAAAC-ATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT----TTTCTT-G-G-G-AATCAAGATTCAAAAACACTAACAATCGATCTAATACACTAA-A-TAAAGAAAATTATG-AAAATATAATTAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTCGGGATTT--CTCGGGGATGTACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Alignments
lowQualScore : 222 1 33333333 1111 11111 1111111111 11111111111 1111111 44444444444444444444444 11111111 1 22222222222222 11
lowQualScore : 1 2 8 333 2 1 1 1 0 5 66 55555555 3 2 1 6 1 4 7777 77 77 5 1 55 1 3 555 2 3 3 555 22222 555 666 3 666 2 5555555555 66666 77777777777 3 4 5 4 4 777 999999 1 5 1 3333333 4 22222222222222222222222 55 4 66666666 9999 1 1 3 2 4 555 00 44444444444444 0 44 0 3 44 55 6 66 3 33 3
lowQualScore : . . . ... . . . . . . .. ........ . . . . . . .... .. .. . . .. . . ... . . . ... ..... ... ... . ... . .......... ..... ........... . . . . . ... ...... . . . ....... . ....................... .. . ........ .... . . . . . ... .. .............. . .. . . .. .. . .. . .. .
lowQualScore : 0 5 0 222 8 0 0 0 3 0 66 99999999 9 0 9 7 9 3 9999 99 99 7 7 55 1 5 888 5 3 3 888 00000 888 444 6 444 7 9999999999 55555 33333333333 6 0 1 4 4 888 666666 3 3 1 0000000 0 11111111111111111111111 55 4 11111111 4444 6 0 6 3 0 444 77 66666666666666 4 66 5 3 22 88 2 88 3 22 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-CAACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAA--AATAAT--AAAAAAACA-TAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT-TT---TCTTG----GGAAT---CAAG---ATTCAAAAAC-AC---TAAC----------AATCGA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTCG--GGATTTCTCGGGGATG--TACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
Reference ( family-3986 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATCAGAATAAANATTTCTGCACTCTTGCAATTCACCTAATACATGATGACAGT-AAAAAAA--CAACTTAAATGTAATACCGAAATAAANTTTTTGTANGTTTAATAAAGTCCCATTTAAACNCACTCGGAGAAAAAAAAA-CAACTGCAAA-----TTTTTCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAATGATAATG----AAAA--AATAAT--AAAAAAACA-TAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGCGGGG---AATGGGTTGATTTCAGCACTTA-TGACT-TT---TCTTG----GGAAT---CAAG---ATTCAAAAAC-AC---TAAC----------AATCGA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAAATACTNACAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCCTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGGATCACGTGACTCTCG--GGATTTCTCGGGGATG--TACGTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACGGGCT-TCGAGTCT-CT-TGT-ATTATGTCTCTG
gi|1 : A-CAACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAG--ATATCAGAATAAAAATTTCTGCACTC
gi|1 : ataatctattacaatcAGATATCAGAATAAAAATTTCTGCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-----NNNNNNNNNNNNNNAAAAGTCGACACTTCTAATAACCATATCAAAATAAAAATT-CTGCACTCGTTCAACATACTA----CATAATGATAATG----AAAAAAAATAAT--AAAAGAACA-CAACAGTGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGCGGGTGGGG---AATGGGTTGATTTCAGCACTTA-AGACT-TT---TTTGG----GGAAT---CAAG---ATTCAAAAAC-AC---TAAC----------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TAAAAAAGATACTTACAATTTCTT-------TA-TTTTT-------------------C---AAAA--AAACCAT--------CAA----GACTATCTGCCTTGTACTG-TTTTTT-CAATATGGCC-GACGATAACGCTA---TTATCATAT----TAAC---------GTT--------ATG--TACGTTAT-TTTAAAAATAGCCAC--ATTAGCAGAAGAACAGGCT-TCGAGTCT-C--TGTAACTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagtcgacacttctaataaccatatcaaaataaaaattctgcactcgttcaacatactacataatgataatgaaaaaaaataataaaagaacacaacagtggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagcgggtggggaatgggttgatttcagcacttaagacttttttggggaatcaagattcaaaaacactaacaatcaatctaatacactaaataaagaaaattatgaaaatataattaaaaaagatacttacaatttctttatttttcaaaaaaaccatcaagactatctgccttgtactgttttttcaatatggccgacgataacgctattatcatattaacgttatgtacgttattttaaaaatagccacattagcagaagaacaggcttcgagtctctgtaactatgtctctg
gi|10 : ataatctattacaatcacaactgacatttttcaaaaccattaagtccactttgagtA-CAACTG-ACA-----TTTTTCAAAACCATTAA-GTC--CACTTTGAGTAAAGATATCAGAATAAAAATTTCTGCA
gi|11 : tctatttcagtttcctgtacacatttccatgtattgaggttgtcaatgctgtgtattcgagcactgtgatatttttctaaaaaaataacctattacaatc-------TA-TTTTT-------------------C---AAAA--CA--TAT--------TGT----AATGATATGC-TCCTATT--TATTTT-TAA-ATGGCCTGACGATGACGCTA---TCATTTGATCATGTGACTC-CA--GGA--GGTCAGGCTTG--TG-------TTTATAAATAGCTAC--TTTAGAGAAAGAAAGACCTGTCT-GTCT-CT-GTT-ATTAAGT
gi|12 : ATCTGCCTTGTATTGTTTATT--CAATATGGCC-GACGATGACGCTA---TAATCGAATCACATGACTCTCA--AGATTTCTCGGGGATG--TACTTTAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-ACTAGTCT-C--TGT-ATTATGTCTCTGtac
gi|13 : TTTTTTTATAA-ATGGCT-GGTGATGAAACTA---TAATTTGACCATGTGGTTCTCGTAGG-----TCA-----G--CATGTGAT-TATAAAA--AGCTAC--TATAACAGATGAAAGGGCT-GCGGGTCT-CT-GCC-ATTAAGTCACTG
gi|14 : tACAACCATGCT---GAATAATGGG--------AAAGTGTTTATTTCAACATTAG-TGATT-AT---TCTTG----AGAAT---CAGC---ATTCAAAAAC-GC---TGGA----------AATTG-------AGTATACTA-----------AGA-TATAGACAAgt
gi|15 : aaatttattcacattaacttACGATGACACCA---TGATTTGATCACGCGATGCTTG-----------GAGCAAG--TGC-TTGCATTTATAAATTGCTAT--TATAGCGGGAGAA-GGACC-T
gi|16 : tatatatgttcaggttggtaGATGACGCTA---TGATCGAATCACGTGACTCTCG--GGATTTCTCGGGGATG--TACGATAT-TTGAAAAATAGCCACTATATAGCGGAAGAATTAGCT-TCAAGTCT-CTGTGT-ATTATGTTTCTGgcctatttcttatcaagtcattg
gi|17 : AATATTGGACAGGG---ACAGTGTTTAATTCAACATTTG-TGAAT-AT---TCTTC----AGAAT---CAAC---ATTCAAAAAC-AC---TTAA----------AATCGA---TTTAGTATACTA-----------A-c
gi|18 : tttgcattcaacccaTGAA-AAC--TGTTAAAGAAAAGTGGGTGGGGTAAAATAAATTG-CGTCAGGAATTA-CGAATGTT---TCTCGT---GGAAT---C
gi|19 : gAAATAGCTAC--TTTAGTGGAAGAATGACCTGTCT-GTCT-CT-GTT-GTTAAGTCACTG
gi|2 : cAGATATTAGAATAAATATTTCTACACTCTTGCAGTTCACCTAATACACGATGATAGT-AAAAAAA---AACTTAAATATAATACCGAAATAAAGTTTTTGTATGTTTAATAAAGTCCCATTTAAACTCACTCG---AAAAAAAAA-CAACTGCAAAATTGTCTTTTCCAAAGCATAAAAGTTGACATTTCTAATAAGCATATCGGAATAAAAATTTCTGCACTCGTTCAACATACTAAATACATAACGATAATG----AAAA--AATAAT--AAAAAAATA-TTACAGCAGAAAAATGTTTTTATAAGTTTAATGAACAAC--TGTTAAAGAATAGTTGGCGTGG---AATGGGTTGATCTCAGCACTTA-TTACA-TA---ACT-G----GGAAT---CAAG---ATTCAAAAAC-AC---TAAC----------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TTT---AAT----TAAAAAAAATACTTAAAATTTCTC-------TA-TTTTT-------------------C---AAAA--AAA-CAT--------CAA----GACGATCTGCTTTGTATTGTTTTTTT-CAATATGGCC-GACGATGACGCTA---TAATCGAATCACGTGACTGTCG--GGATTTCTCGGGGATG--TACGTTTT-TTTTAAAATAGCCAC--TACAGCGGAGGAACAGGCT-TCCAGTCTCCT-TGT--CTATGTCTCTG
gi|20 : ttttcaaacttaccagtgtcatgtgtcaattcatA---TAATTGGATCACGTGATTCTTG--G
gi|3 : gA-CAACTGCA-------TTTTTC--------AAAAGTC--CACTTTGAGTAAAGATATCAGAATAAATATTTCTGCACTCagtgcatg
gi|3 : aataatcttttacaatcAAGTGGACACTTCTAATAAGCATATAGAAATAAAAATTTCTGCACTCATTCAACATATTAAATACATAATGATAATG----AAAA--AAAAAA--AAAATAATAATAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAAGAATAGTGGGTGGGG---AATGGGTT-------------A-TGACT-TT---TCTTG----GGAAT---CAAG---ATTCAAAAAC-AC---TAAC----------AATCAA---TCTATTACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----TTAAAAAAATACT------------------TA-ATTTT-------------------C---AAAA--AAA-CAT--------CAA----GACAATCTGCCTTGTATTGTTTT--T-CAATATGGCC-GACAATGATGCTA---TAATCGAATCACGTGACACTCT--GCATTTCTTGGGGATG--TACGTTAT-TTTTAGAATAGCCAC--TATAGCGGAAGAACAGGCT-TCGAGTCT-C--TGT-ATTATGTCTCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtggacacttctaataagcatatagaaataaaaatttctgcactcattcaacatattaaatacataatgataatgaaaaaaaaaaaaaataataataacagcggaaaaatgtttttgtaagtttaatgaacaactgttaaagaatagtgggtggggaatgggttatgacttttcttgggaatcaagattcaaaaacactaacaatcaatctattacactaaataaagaaaattatgaaaatataatttaaaaaaatacttaattttcaaaaaaacatcaagacaatctgccttgtattgtttttcaatatggccgacaatgatgctataatcgaatcacgtgacactctgcatttcttggggatgtacgttatttttagaatagccactatagcggaagaacaggcttcgagtctctgtattatgtctctg
gi|4 : aataatcttttacaatcacaactgcatttttcaaaagtccactttgagtaaagatatcagaataaatatttctgcactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATATCAGAATAAATATTTCTGCACTCTTGCAATTCACCTAATACATGACGGTAGT-AAAAAAA----ATTTAA-TGTAATACCGAAATAAACTTTTTGTAAGTTTAATAAAGTCCCATTTAAACACACTCGGAGAAAAAAAAAACAACTGCAAAATTGTCTTTTCCAAATCATGAAAGTTGACACTTCTATTAAGCATATCAAAATTAAAATATCTGCACTCATTCAACATACTAAATACATAATGAAAATT----AAAA--AATAAT--AAAAAAACA-TAACAGCGGAAAAATGTTTTTGTAAGTTTAATGAATAAC--TGTTAAAGAATAGTGGGTGGGG---AATAGGTTGATTTCAGCACTTG-TGACT-TT---TCTTG----GGAAT---CAAG---ATTCAAAAAC-AA---TAAC----------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATTATG-AAAA-TAT---AAT----T--AAAATTTTTTTAAAATTTCTA-------TA-CTTTT-------------------CAAAAAAA--AAA-CAT--------CAA----GACAATCTACCTTGTATTGTTTTTTT--AATGTGGCC-GACGATGACGCTA---TAATCGAATCACGTGAC------------TCTCGGGGATG--TGTGTTAT-TTT-AAAATAGCCAC--TATAGCGGAAGAACAAGGT-TCGAGTCT--T-TGT-ATTATGTTTCT
gi|5 : ATTCACCTAATACATGATGACAGTAAAAAAAA--CAACTTCAAT
gi|5 : tctctgAGTAAAAAAAA-CAACTTCAA----------TCCAAATCATAAAAGTCGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACAAACAAAATAAATAATGATAATG-----AAA--AATAATAAAAAAAAACA-TAACAGC-GAAAAATTTTTTTGTAAATTTAATGAACAAC--TGTATAAGAATAGTGGTTGGGG---AATTGGTTGATTTCAGCAC-TA-TAACT-TT---TCTTG----GGAAC---CAAG---ACTCAAAAAC-AC---TAAC----------AATCAA---TCTAATACACTA-----------A-A-TAAAGAAAATAATG-AAAA-TAT---CAT----T-AAAAAAATACTAACAATTTCAC-------TA-TTTTT-------------------C---GAAAATAAA-CAT--------CAA----GACAATCTGCCATGTATTG--TTTTT-CAATATGGCT-GACGATGACACTA---TAATCAAATCACGTGAC------------TCTCGGGGAAG--TACGATAT-TTTAAAAATAACCAC--TATAGCGGAAGAATAGGCT-TTAAGTCT-CTATGT-ATTATGTCTCTGccaaatcataaaagtcgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacaaacaaaataaataatgataatgaaaaataataaaaaaaaacataacagcgaaaaatttttttgtaaatttaatgaacaactgtataagaatagtggttggggaattggttgatttcagcactataacttttcttgggaaccaagactcaaaaacactaacaatcaatctaatacactaaataaagaaaataatgaaaatatcattaaaaaaatactaacaatttcactatttttcgaaaataaacatcaagacaatctgccatgtattgtttttcaatatggctgacgatgacactataatcaaatcacgtgactctcggggaagtacgatattttaaaaataaccactatagcggaagaataggctttaagtctctatgtattatgtctctg
gi|6 : tctctgattcacctaatacatgatgacTGCA-TCATTCAACATACTAATTA--TAATGATAATGA---AAAA--AATATT--AAAAAAATA-TAACAGCGG-AAAATGTTTTTGTAAGTTTAATGAACAAC--TGTTAAATAATAGTGGGTGGGG---AATGGGTTGATTTCAGCACTAAGTGTTT-TTGAATCTTG-------ATTCCCAAGAAAAGTCATAAGTGACTTATGACTTTTCTTGGGAATCAAGATTCAAAAACACTAACAATCAATCTA-A-TACACTAAATAAAG-AAAATTATGAAAATATTATAAAAAGAATACTAACAATTCCTC-------TA-TTTTT-------------------TTTGAAAA--ATA-AAT--------AAA----GATGATTTGCCATGTATTA--TTTTT-CAATATGGCC-GACGATGATGCTATGGTAATCGAATCACGTGACTCTCG--GGATTTCTCGGGGATG--TACGATAT-TTTAAAAATAGCCAC--TATAGCGGAAGAACAGGCT-TCAAGTCT-CTGTGT-ATTATGTCTCTG
gi|7 : taaattaaacaGATATCAGAATAAAAATTTCTGCA--------ATGCACCTAATACATGATGACAGT-AAAAAAACCCAACTTAAAT
gi|7 : AAAAAAACC-CAACT-TAAA---------TCCAAATCATAGAAGACGACACTTCTAATAAGCATATCGAAATAAAAATTTCTGCACTCGTTCAACATACTAAATAAATAATGATAATGAAAAAAAA--AAAAAA--AAAAAAACA-T-ACAGCGGAAAAATGTTTTTGTAAGTTTAATGAACAAC--TGTAAGAGAATAGTGGGTGGGG---AATGGGTTGATTTCAACACTTA-TGACT-TT---TCATG----CGAAT---CAAG---ATTCAAAAAT-AC---TAAC----------AATCAA---TCTAATAGACTA-----------A-A-TAAAGAAAATTATGAAAAA-TAT---AAT----TAAAAAAAATACTAACAATTTCTC-------TA-TTTTT-------------------CGA-AAAA--AAA-CAT--------CAA-------GATCTGCCATGTATTG--TTTTT-CAATccaaatcatagaagacgacacttctaataagcatatcgaaataaaaatttctgcactcgttcaacatactaaataaataatgataatgaaaaaaaaaaaaaaaaaaaaacatacagcggaaaaatgtttttgtaagtttaatgaacaactgtaagagaatagtgggtggggaatgggttgatttcaacacttatgacttttcatgcgaatcaagattcaaaaatactaacaatcaatctaatagactaaataaagaaaattatgaaaaatataattaaaaaaaatactaacaatttctctatttttcgaaaaaaaacatcaagatctgccatgtattgtttttcaat
gi|8 : gatatcagaataaaaatttctgcaatgcacctaatacatgatgacagtGAATAATGGACAGGG---AAAGTGTTTATTTCAACATTTG-TGACT-AT---TCTTG----AGAAT---CAGC---ATTCAAAGAC-AC---TCGA----------AATCGA---TTTGGTATACTA-----------A-AATATAGAAAAC-----AAAA--AT---AA------AACAAATATATTCGAAATATGTCCCGATTTTA-TTTTTGAAAAACATATCGTAATAAC---AGAA--AAA-TATAGTTAAGTCAATAGTAATAATATGT-TTAGGTTGTTTGT---CAAAATGGCC-GACGATGACGCAA---TAATTTGATCACGTGATTCTCG--GAGT-------GCGTGCTTGCGTT-----TATAAATAACTAC--TACTGCAGTAGAA-GGACC-T---GTCT-CT-GCT-ATTATGTCACTG
gi|9 : acattaatttccaaccatgtcAAAAAAGTTTCTATA---CTAATTTACAAC--CGT-GCCGAATGATGCACGGGG---TACATGTCTATTTCAACATTTA-TAATT-AG---TCTTGCCGGAGAAT---CAGT---ATTCA-AAAC-AC---T-------------------------------CTA-----------A-A-TAAA-AAGATAAAA-CAAC-TAT---A------TGTGAAATATAC-GCCAACTACTT-------TACTCTTT-------------------C---AAAA--At