lowQualScore : 1111111111111111111111111111 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111
lowQualScore : 1 8888888888888888888888888888888888888888 2222222 0000000000000000000000000000 555555 22222222222 4444444444444444444 1 11 111111 2222222 2222222222222222 11 1 333 1111111 000000000000000000000000000000000000000000 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222 111111 22222222222222222 1 22222 333 1 1 11111111111111111111111111111111111111111 33333333333333333
lowQualScore : 0 8888888888888888888888888888888888888888 444 3 0000000 3 6666666666666666666666666666 4 3 3 1 1 1 0 0 222222 2 22 1 1 4444 333 22 4 22 00000000000 33 444 8888888888888888888 2 888 4 00 666666 2 5555555 5555555555555555 00 2 0 222 0 2222222 0 666666666666666666666666666666666666666666 7777 1 33333 2 5555 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 666 3 6 6666 44 3 9 333333 33 11 77 33 88 444 8888888 000000 2 77777 22222222222222222 33 3 6666 0 3 1 11111 333 3333 1 44 22 222 22 1 1 22 4 4 0 22 7 22 44444444444444444444444444444444444444444 555555555 55555555 666666666 1 1 77777777777777777 22 1
lowQualScore : . ........................................ ... . ....... . ............................ . . . . . . . . ...... . .. . . .... ... .. . .. ........... .. ... ................... . ... . .. ...... . ....... ................ .. . . ... . ....... . .......................................... .... . ..... . .... .......................................................................................................................................................... ... . . .... .. . . ...... .. .. .. .. .. ... ....... ...... . ..... ................. .. . .... . . . ..... ... .... . .. .. ... .. . . .. . . . .. . .. ......................................... ......... ........ ......... . . ................. .. .
lowQualScore : 4 2222222222222222222222222222222222222222 444 1 1111111 8 2222222222222222222222222222 7 6 5 7 7 7 5 2 555555 8 66 9 9 0000 333 66 9 66 11111111111 77 777 1111111111111111111 4 555 9 00 444444 9 9999999 2222222222222222 11 6 9 111 8 0000000 7 666666666666666666666666666666666666666666 7777 2 00000 5 3333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 3 3 5555 00 1 2 777777 66 88 33 77 99 777 7777777 777777 4 11111 11111111111111111 88 1 5555 5 8 1 11111 000 7777 7 77 44 777 33 6 6 33 9 8 7 22 1 00 22222222222222222222222222222222222222222 999999999 44444444 222222222 5 7 44444444444444444 55 7
consensus : TATACTGAACGACAAAAA-----A------C---AA---C---NT----T------TAT---TTCTAAGGGTCATAAAA-CCA-T---ACCAAGTCCAT-----------------------T---GGAGGGAA-A-TAAT-ATCGACCGATTATTTACTGT---TGTAGGACGGTA--TACTA-A-T----AAT---TAGCA--AGT--GTTTCCATTCC--TT-AACGGTTA--CACAAA---TG-C-T-G-T-----------ACCTCTGACAGGTATTG---TTTCCGCAT---G--AAGTG-CAC-----GTGCACCGA-TTAG-GC--NGAAAAAATCCGTGC-AA-AATGTTTC------GCATA-----------GAC-----------AC---------------GAC---ACAATCACA-----AAG-T----TAAA------A--------------T-------T----TAAAT---GTT--CGCGAACG---AAA----TC--AAG--------AAT-TT-TAA-CTT-----T------GTGAT---TGTGTC----AGGTTA----------TT--CGCG-----TCTAT--GTG-AAACATTTT----GCACGG-A-TTT-TN---CAGCCTAA-TCGGTGCACGTGCACTT--C--ATGCGGAAACA---AT-------AC-----CTGTCA-----GAGGTA----CAG----GCATTT-GTGTAA-C----CGTTAAGGAA-TGGAAACACTTGCTA---ATT----A-T-TAGTA--TAC-CGT--CCT-A-CAG--TAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-TTGGTATG------T---------T---T-----------A---------TG--------ACCCT---------TAGAA-ATATGT-T----G--T-G--TG---TTTTTT--GTCGTTCAGTATA
Reference ( gi|1 ) : TATACTGAAAGACAAAAA-----A------T---AA---C---TT----TT-----TAT---TTCTAAGGGTCATAAAA-CTA-A---ACCAAGTCTAT---------TGG--------AGGT---GGGGGGGA-A-TAAT-ATTGACCGATTATTTACTGTTACTGTAGGACGGTA--TACTA-A-T----AAT---TAGCA--AAT--GTTTCCATTTA--TT-ATTGGTTA--CACAAA---TG-C-T-G-TA----------ACCTCTGACACGTATTG---TTCCTGCAT---A--AAGTG-CAT-----TTGCACAAA-TTAG-AC--AGAAAAAAACTGTGC-AA-C-TGTTTC------GCACA-----------AAC-----------AC---------------GAC---ACAGTCACA-----AAG-T----TAAA------A--------------T-------T----TAAAT---ATT--CACGAACA---AAA----TC--AAG--------AAT-TT-TAA-CTTG----T------GTGAT---TGTGTC----AGGTTA----------GC--CGCA-----TCTAT--GTG-AAATATTTT----GCATAG-A-TTT-TA---CAGCCTAA-TCGGTGCACGTGCACTT--C--ATGTAGAAACA---AT-------AC-----TTGTTA-----GAGATA----CAC----GCTTTT-GTGTAA-C----TGTTAATGGA-TGGCAACACTTGCTA---ATT----A-T-TAGTA--TAC-C-T--CCT-A-CAG--TATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA---------------T---------T---T-----------A---------TG--------ACCCT---------TAGAA-ATATGT-T----G--T-A--TG---TTTTTT--GTTGTTCAGTATAT
gi|3 : TATACTGAACAACTAAAA-----A----------GA---C---TC----CCAACA-TAT---TTCCAATTGTTATTAA--CCA-T---ACCAAGTACAT---------------------------GGAGGGAG-A-TAAT-ATCGGCTGATAATTTATTGT------AGGATGGTA--TACTA-A-T----AAT---TAGCA--AGT--ATTTCTATTCC--TTGATT-GTTA--CGCAAA---TG-CTT-G-T-----------ACATCTGACAGGTAATG---TTTCCCCAT---A--AAGGG-CAT-----AAGCACTGA-TTAG-GC--TAAATAAATATACGC-AA-A-TA-TTC------GCACA-----------AACAGTTGTTAATAACCCCA-----------AAC---ACAATCACATT---TAG-T----TAAA------AG-------------T-------C----TTGATTTCATT--CGTGAACATTTAAA-----C--AAGC-------CAT-TT-TAA-ATTC----T------ATGA
gi|5 : TATACTGAATAACAAAAA-----AACAAAGC---AA---C---AT------------AT---TTCTAAAGGTCATAAAA-TCA-T---ACCAAATCCA----------------------AAT---AGGGGAAA-A--AAT-ATCAACCGATTATTTATTGT------AGAACAGTA--TACTA-A-T----AAT---TAGCA--AGT--GTTTCCATTCC--TT-AACAGTTA--CACAAA---TGCC-T-G-T-----------ACTTCTAACAGGTATTG---CT-CTGCAT---G--AAGTG-CAC-----ATGCACCGA-TTAG-GC--TGAaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|4 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatgatttaaTATACTGAACAACAAAAATAAC-A------C---AA---C---CT------------AT---TTCTAAGGGTAATAAAA-CCA-T---ACCAAATCT------------------------GT---GGACGGAA-A-TAAT-ATTGACCGATTAT------TTATTGTAGAACAGTA--TAAAA-A-T----ACT---TCACA--AA---GTTc
gi|6 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcttgtttaaatgttcacaaatgaaatcaagtctttTATACTGAACGCCAAAAA-----A-----------A---C---CCGAG-TT-----T-T---TTCTAAGGGTCATACAA-CCA-T---ACCAGGTCCAC---------TGA-------------------GGGA-ACTAAA-AATGACTGATTATTTATT----CTGT--GACGGTA--TAATATACT----AAT---TAGCA--AGT--GTTTATATTTG--TT-AACGGTTACTCGCAGA---T--C-T-G-C-----------ACCTCTGACAGGTATTG---TTTCCGCAT---G--AAGTG-CACGTAGGCTGAACAAA-TCCGTAC--AAAA------TGTAT-AACC-TG----------ACACA-----------ATC-----------AC---------------GA------AGTTAT------AAG-T----TAAA------ATTTGAAACGACTCGT-------T----TAAAT---GTT--CAGGAACG---AAT----TA--AAG--------
gi|21 : TATAATGAAAGACAAAAA-----A------A---AAAACC---AA----AA-----TAT---TTCTCAGGGTCATACGA-CCA-T---ATCATGTCCAT---------------------------GGAGGGAA-A-TAAT-ATTGACTGATTAT-----GT-ACTGTAGGACCGTA--TACTA-A-T----AGT---TAGCA--AGT--GTTTCtctcagtccactctgtg
gi|20 : TATACTTAACGACAAAAT-----AGACTG-C---AA---CATATT----TC-----TACACATACTAAGGGTCATAAAA-CCA-T---ACCAAGTCCAT---------------------------GGAGGGAA-A-TTAT-ATCGACCGATTATTTATTGT------AGGACGGTA--TGCTA-A-T----GAT---TA--A--AATGCGTTTCCATT
gi|8 : TATACGGAACGACACAAC-----A------C---CA---C---CCCCAATG-----TGT---TTCTAAGGGTCA--AAA-CTA-T---ACCAAGTCCAT---------TGA------------------GGGAA-A-TAAT-ATTGA----TTATTTACTGT------AGGACAGTA--TAC----------AAC---TAGTA--ATT--GTTTTCATTTC--TT-ACTGATTA--CACAGA---ccataa
gi|22 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTATACTGAACGACAAAAACCCCCA------A---AA---C---AT----TT-----T------TTTAAGAGTCATAAAAACTA-T---ACCAATTCAAC--------------------AGAC---GAA----A-A-TAAT-ATTGACC--------ACT-TTACTGTAGGACATTA--TACTT-A-T----AAT---TTGCG--AGT--GTTCC
gi|29 : TGTACTGAAAGACA-------------------------T---TT----TT-----TTT---TTCTAAGGACCATAAAA-CCA-T---ACCATGTCCA------------------------T---GGAGGGAA-G-TAAT-ATTGACCCATT
gi|33 : cTATACTGAAAGACAAAAG--------------------------T----TT-----T-T---TTATAAGGGTCATTAAA-CCA-T---ACCAAGT
gi|2 : ataATACTGAAA---AAACA-----C------T---GA---C---AT------------AT---TTTTAAGGGTCATAAAA-TCA-T---ACCCAGTCCAT---------------------------GGAGGGAA-G-TAAT-ATTATCTGATTATTTACTGT------GGGATGGTA--TACTA-A-T----AAT---TAGCA--AGT--GTTTCCG-TTA--TCAAATGGTTA--AAACAA---TG-C-C-A-CT----------TCCTCTGGCAGGTATTG---TTTCCGCATTAGA--AA---------------CACCAA-CTAG-GC--GGAAAAAATCTCTGC-AA-a
gi|9 : ATACTGAA---CAACAA-----A------T---AA---C---AC----TCATACATGTA--TTCTAAGGGTCATTATA--TC-A---ACTGATTATATACTGTAAGATGGTAAGTAGCAAGTCACGGAGGGAA-A-TAAT-ATTGATGGATTATTTACTG--A----AGGACTGTT--TACTA-A-T----AA-----A--A--AGT--GTTTCCATTCC--TT-AACTGTTA--TACAAA---C--------------------ATCTCTAACAGGTATTG---TTTCAGCAT---G--AAGTG-CAC-----ATGCACTGA-TTAA-AT--Aaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgcgtacagccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|23 : ATAATGAAAGACAAAAA-----A------CCAAAA--------------------TAT---TTCTCAGGGTCATA-------------TCATGTCTAT---------------------------GGAGGGAA-A-CAAT-ATTGACTGATTAT-----GT-ACTGTAGGACCGTA--TATTA-A-T----AGT---TAGCA--AGT--GTTTCCtcctgaataacgtctgatatttttccccta
gi|8 : ATACCGAGTGACAAAAAGCCCAA------A---AG---C-----------------AT---TTCTAAGGGTCATAAAA-CCATACATACCAAGTCCA------------------------T---GGAGGGAA-A-TAAT-ATT----GATTAT------TTACTGTAGGACAGTA--TAC----------AAC---TATTA--ATT--GTTTCTATTTT--TT-ACAGATT--------A---TG-C-T-GAAA----------ACTTCTG
gi|31 : ATACTGAATGA-AACAA-----A------C---AA---C---AT------------AT---TTCTGAGAGTCATCATA-CCA-T---ACCAAGTCCA----------TGG--------AGGtgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|4 : aTACTGAATGAAAAAAAC----A------C---AA---C---TT------------AT---TTCTAAGGGTAAAAAAAAC---A---ACCA-GTCCAT----------------------------GGAGGGATA-TAAT-ATTGACCCGTTATTTACTGTT------GGACGGTA--TAATA-A-TTACTAATCCTTAACA--AGT--GTTTCCGTTCC--TT-AACAGTTA--CACAAA---TG-C-------------------------CAGGTATTGC--TTCCT-CAT---T--AAGTG-CAT-----GTGCACCGA-TTTG-GC----AAAAATATTCTGCAAA-A-TGTTTTACATCGGCACATTGTT------AAT-----------A-----------------ACCTGACAGTCACA-----AAGTT----TAAA------ATTGAAATGGCTTG-T-------T----TAAAT---GTT--CACAAATG---AAA----TC--AAG----------TCTT-TAA-CTT-----T------GTGAgaaat
gi|2 : TACTGAACCACAAAAA-----AA-----C---AA---C---AT------------AT---TTCTAAGGGTCATAAAA-CCA-T---ACCAACTCCA------------------------T---GGATGGAA-A-TAAT-ACTTACCGATTATTTACTGTT--TGC----CAGTG--TTCTC-A-T----AAT---TAGCAAGAGT--ATTTCagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|24 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgcgtacagccattttgtTACTGAACGACAAAAA------------C---A---------------------TAT---TTCTAATGGTTATAAAA-CCA-T---AACAAGCCCAT---------------------------GGAGGGAA-A-TACT-ATCGGCCGATTCTTTACTGTC------GGGCGGTA--TACTA-A-T----AGT---TGGCA--AGT--GTT
gi|5 : ACTGAACAACAAAAA-----AA-----TCA-AA---C---AT------------AT---TTCTAAGGGTTATAAAA-CCA-T---ACCAAATCCA------------------------T---GGAGGGAA-A-TGAT-ATCGACCAACTATTTACTGT
gi|30 : aaaaAAAAA-----A------G---AG---C---CCAA--TT-----TAT---TTCTAAGGGTCATAAAT-CTA-aggcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|27 : aaacagtaaatatctgcgagttagtatttcccttcgA-----A------C---AA---C---AT----TT-----T------TCTAAGGATCATAAAA-TCA---------------------------------------T---GGAGGGAT-A-TAAT-ATCTACTGATTATCTACTGT------AGGATGGTA--TACTT-A-T----AAT---AAGCA--AAT--GTTTCCAT
gi|3 : ac-----TAT---TTCTTAGGGTCTTAAAA-CCA-T---GCCAAGTCCAT---------------------------GGAAGGAA-A-TAAT-ATCAACTGATTATT-A-----ACTGTAGGACAGTA--TACTA-A-T----AAT---TAGTA--TGT--GTTTCCGTTT
gi|16 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaacaagccattttaaattctatg-----TAT---TTGTAAGGGTCATTAAA-CAA-T---ACCAAATCCAT----------------------------GAAGGGA-A-TCATTATAGATTGATTATTTACT------GTAGGACAAGA--TACTG-T-T----AAT---TAGCA--AGT--GTTTCCATTC------------------CCAA---TGTC-T-G-T-----------TCCTGCGACAAGTGTTG---TTTCCACAT---G--AAGTG-CAC-----Ttgtacggtgagttgattttcttttgtcta
gi|7 : taatcAT---TTCTAAAGTTCATAA------------TCAAGACTGT---------TTG-----------T---GGAGAGAA-A-TAAT-ATTGACCATTTATTTACTGT--------------A--TACCA-A-T----AAT---AGGCA--AGT--GTTTTAATTCC--TT-AACAGTTA--CAAAAA---TA-CCT-G-TGCCTCAAAAATACCTGTGCCTCAGATTGATGTTTCGGCAT---G--AAGTG-CAT-----ATGCACCGA-TTAG-GC--TGAAAAAAA-TCTGC-AA-AATGTTTC------GCATAAGTGTGTTAATAAC-----------CT---------------GAT---ACAATCACAGTTGTAAT-T----TGAA------A--------------TGGC----TTGCATAGAT---GTTCACACGGATG---GAA----CC--AAG--------ACT-TT-Ttgtttatttggatttttttgcaatttagta
gi|35 : agac---TTCTAAAGGTCATACAA-TGA-T---ACCAAGTCCA----------TAG--------AGG
gi|19 : GGCCATAAAA-TCA-T---ACCTAGTCTAT----------------------------GGAGGGACA-TAAT-ATCGACCGATTATTAATTGTgatataata
gi|10 : CAAGTCCAT---------------------------GGAGGGAA-A-TAAT-ATTGATCGATTATTTACTGT------AGGAATGCAAATAC---A-T----AAT---TTGCA--AGT--GTT--CATTCC--TT-ATCAGTTA--CACAAA---TGCC-T-G-T-----------ACCTCTGACATGCATTG---TTTTCACGT---G--TAGTG-CAT-----GTGTACATA-TTAG-GC--TG-TAAAATCCGTGC-AA-A-ATTTTC------GCATA-----------GAC-----------ACGTTAATAACCTGTCAGAC---ACAATCACA-----AAG-T----TAAA------A--------------T-------T----TGAAgaagtatccatattttcatgtgtttactatttggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|14 : tctgtgaacatttaaacaagagatGTAGGGCAGTA--TACTC-A-T----AAT---TAGCA--AGT--GTTTCC-------TT-AATGGTTA--CACAAGGCCTG-C-C-T-CT----------ACCTTTGACAGGTATTG---TTTTCGCTG---G--AAGTG-GA------------AAA-T------------AAAACCTGTGCAAA-A-TGTTTT------ACATA-----------GGC-----------ACTTTGTTAATAACCT-GAC---ACAATCACA-----AAG-T----TAAA------A--------------T-------T----TGAA
gi|25 : TTCC--TTAATTT-ACCAGTTA--CACA-----TG-C-TTG-TA-----------CCTCTGACAGATATTG---TTTCTGCAT---G--AAGTG-CAC-----ATGAACCGATTTGG-GCTGAAAAAAAAACTGTGCAAA-A-TGTTTC------ACatggctcatttaaatgttcacaaaagaaaaaagt
gi|18 : --CACAGT---TG-CCT-G--A----------ACCTCTGACAGGTATTT---TTCC-ACAT---GTGAAGTT-CAC-----GTGCACCAC-T---------GTAAAAATCCATAC-AA-AATGTTTC------ACTTA-----------GAC-----------CT---------------GAC---ACAATCACA-----AAG-T----TAAA------AGTTAAAATTC----T-------T----CAAAT---GCT--CACGAACA---AAA----TA--AAG----------TCTT-TAA-TTT-----T------GTGAtgc
gi|17 : --CACAGT---TG-CCT-G--A----------ACCTCTGACAGGTATTT---TTCC-ACAT---GTGAAGTT-CAC-----GTGCACCAC-T---------GTAAAAATCCATAC-AA-AATGTTTC------ACTTA-----------GAC-----------CT---------------GAC---ACAATCACA-----AAG-T----TAAA------AGTTAAAATTC----T-------T----CAAAT---GCT--CACGAACA---AAA----TA--AAG----------TCTT-TAA-TTT-----T------GTGA
gi|2 : gCAC---A--AAATGGC--------TGTACGCA-TTAG-GC--TAAAAAAATCCATGC-AA-AATGTTTC------TGATA-----------GAC-----------ACTGTTAATCT------GAT---ACAATCACA-----AAT-T----TAAG-----------------------------T----TAAA----ATC--TG---------AAA----TC--A-----------------TGG-CTTG----T----------T---TA---C----ATGTT---------------CACA--------A---ACG-AAATCTTTTTTTTGCAGAG-A-TTT-TTT--CCGCCTAG-TTGGTGT--------TT--CTAATGCGGAAACA---AT-------AC-----CTGCCA-----GAGGAA----GTG----GCATTG-TTTTAA-CCATTTGATAACGGA-----AACACTTGCTA---ATT----A-T-TAGTA--TAC-CAT--CCC-A-CAG--TAAATAATCAGATAA--TATTACTTCCCTCCA--TGGACTGGGTATGAT----T---------T---T-----------A---------TG--------ACCCT---------TAAAA-ATATGT-C----A----G--TG---TTTT--------TTCAGTAT
gi|28 : -----------AAC-----------CC---------------CAG---ACAGTAACA-----AGG-T----TAAA------AAGCTTG--------T-------T----TAAAT---ATT--CACAAAAG---AAA----TG--ATG----------T-CTGTAA-CTT-----T------GTGAaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|3 : ttatatacacaagttaatTCATAG----AAT-T----TAAA------A--------------TGGCTTGTT----TAAAT---GTT--CACGAATG---AAA----TC--AAG--------ACT-TT-TAA-CTAAA---T------GTGAT---TGTGTTTG--GGGTTA----------TT--AACA-----ACTGTTTGTGCGAATATTT-----GCGTAT-A-TTTATT---TAGCCTAA-TCAGTGCTTATGCCCTT--T--ATGGGGAAACA---TT-------AC-----CTGTCA-----GATGTA----CAA----GCATTT-GCGTAA-C----AATCAAGGAA-TAGAAATACTTGCTA---ATT----A-T-TAGTA--TAC-CAT--CCT-A-CAA--TAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTA---------------C---------T---TGGTATGGTTA-A---------TA--------ACAAT---------TGGAA-ATATGT-T----G--G-G--AG---TCTTTTTAGTTGTTCAGTATA
gi|4 : TCACA-----AAG-T----TAAAG-----A--------------C-------T----TGATTTC-ATT--TGTGAACATTTAAA-----C--AAGCCATTTC-AAT-TT-TAAACTT-----T------GTGAC---TGT--C----AGGTTATTAACAATGTGC--CG----------AT--GTA-AAACATTTT----GCAGAATA-TTT-TT-----GCCAAA-TCGGTGCACATGCACTT--A--ATGAGGAAGCA---AT-------AC-----CTG-------------------------GCATTT-GTGTAA-C----TGTTAAGGAA-CGGAAACACTTGTTAAGGATTAGTAA-T-TATTA--TAC-CGT--CCA-A-CAG--TAAATAACGGGTCAA--TATTATATCCCTCCA--TGGACTGGTTGTT------T---------T---T-----------T---------TT--------ACCCT---------TAGAA-ATAAGT-T----G-------TG---TTTTTT---TCATTCAGTAaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|18 : TCACA-----AAA-T----TAAAGACTTTA--------------T-------T----T---T---GTT--CGTGAGCA----------TTTGAAG--------AAT-TT-TAA-CTTT----TAACTTTGTGAT---TGTGTC----AGG--------------------------TCTAA--GTG-AAACATTTT----GTATGG-ATTTT-TA---CAG-------TGGTGCACGTGAACTTCAC--ATGTGGAAA-A---AT-------AC-----CTGTCA-----GAGGTT----CAG----GCagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|17 : cacagttTCACA-----AAA-T----TAAAGACTTTA--------------T-------T----T---T---GTT--CGTGAGCA----------TTTGAAG--------AAT-TT-TAA-CTTT----TAACTTTGTGAT---TGTGTC----AGG--------------------------TCTAA--GTG-AAACATTTT----GTATGG-ATTTT-TA---CAG-------TGGTGCACGTGAACTTCAC--ATGTGGAAA-A---AT-------AC-----CTGTCA-----GAGGTT----CAG----GC
gi|6 : gcacagttCACA-----GAG-TGGACTGAG------A--------------C-------T----TTAATTC-GTT--CCTGAACATTTAAA-----C--GAGTCGTTTCAAAT-TT-TAA-CTTA----TAACTTCGTGAT---TGTGTC----AGGTTA-------------------------------T----ACATTTT----GTACGG-A-TTTGTT---CAGCCTA----------CGTGCACTT--C--ATGCGGAAACA---AT-------AC-----CTGTCA-----GAGGTG----CAG----ATCTGC-GAGTAA-C----CGTTAACAAA-TATAAACACTTGCTA---ATT----AGTATATTA--TAC-CGT--C---A-CAGAATAAATAATCAGTCAT--TTTTAGTTCCCTCAG--TGGACCTGGTATGG-----T---------TG--T-----------A---------TG--------ACCCT---------TAGAA-AAAACT-C----G--G-G--T----TTTTTT--GGCGTTCAGTATA
gi|14 : G-T----GAAC------A--------------T-------T----TAAAT-----------GAGCC---ATT----TC--AA----------AT-TT-TAA-CTT-----T------GTGAT---TGTGTC----AGGTTA----------TT--AACAAAGTGCCTAT--GTA-AAACATTTT----GCACAG-G-TTT-TA---T---TT---TC----------CACTT--C--CAGCGAAAACA---AT-------AC-----CTGTCA-----AAGGTAGAGGCAG----GCCTT--GTGTAA-C----CATTAA-GGA-----AACACTTGCTA---ATT----A-T-GAGTA--TAC-TGC--CCT-A-C
gi|10 : ----TGAAC---ATT--TA--AACA---AGAGATTTC--AA----------AT-TT-TAA-CTT-----T------GTGAT---TGTGTCTGACAGGTTA----------TTAACGTG-----TCTAT--GCG-AAA-ATTTT----GCACGG-A-TTT-TA---CAGCCTAA-TATGTACACATGCACTA--C--ACGTGAAAACA---AT-------GC-----ATGTCA-----GAGGTA----CAG----GCATTT-GTGTAA-C----TGATAAGGAA-TG--AACACTTGCAA---ATT----A-T---GTATTTGCAT-T--CCT-A-CAG--TAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA---------------C---------T---T-----------aaaagaaaaaagt
gi|7 : tctg--------AAT-TA-CAA-CT-------------GTGAT---TGTATC----AGGTTA----------TTAACACA-----CTTAT--GCG-AAACATTTT----GCAGAT-T-TTT-TT---CAGCCTAA-TCGGTGCATATGCACTT--C--ATGCCGAAACATCAATCTGAGGCACAGGTATTTTT------GAGGCA----CAG----GTATTT-TTGTAA-C----TGTTAAGGAA-TTAAAACACTTGCCT---ATT----A-T-TGGTA-------------T-A-CAG--TAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA---------------CAGTCTTGA-T---T-----------A---------TG--------AACTT---------TAGAA-ATg
gi|2 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaAT-TT-TAA-CTTAAATTT------GTGAT---TGTATC----AGATTA----------AC--AGTG-----TCTAT--CAG-AAACATTTT----GCATGG-ATTTT-TT---TAGCCTAA-T--GCGTACAGCCATTT------TGT-GAAATA---CT--------C-----TTGCTAATTATGAGA-A----CAC----
gi|15 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagAT-TC-CAA-CTCT----T------GTGGTAAATTTATC----AGCTTA----------TT--AACAAATTATCAAT--GTG-AAACATTTT----ACGCGG-A-TTT--AGT-CAGCATAA-TCGTTGCACGTGCATTT--C--ATGCAGAAACA---AC-------Atggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|25 : --GTG-AAACATTTT----GCACAG-T-TTT-TTTTTCAGCCCAAATCGGTTCATGTGCACTT--C--ATGCAGAAACA---AT-------AT-----CTGTCA-----GAGGTA----CAA----GC--AT-GTGTAA-C----TGGTAAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|5 : ----GCAT-G-A-TTT-AAT--CAGCCTAA-TCGGTGCATGTGCACTT--C--ATGCAGAG-CA---AT-------AC-----CTGTTA-----GAAGTA----CAG----GCATTT-GTGTAA-C----TGTTAAGGAA-TGGAAACACTTGCTA---ATT----A-T-TAGTA--TAC-TGT--TCT-A-CAA--TAAATAATCGGTTGA--TATTTTTTC-CCCTATTTGGATTTGGTATGAT----T---------T---T-----------A---------TG--------ACCTT---------TAGAA-ATATGT-T----GC-T-T--TGT--TTTTTT--GTTATTCAGTATAattaaggaatgc
gi|9 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtagTAA-TCAGTGCATGTGCACTT--C--ATGCTGAAACA---AT-------AC-----CTGTTA-----GAGATG--------------TTT-GTATAA-C----AGTTAAGGAA-TGGAAACACTT--T-----TT----A-T-TAGTA--AACAG-T--CCT-T-CAG--TAAATAATCCATCAA--TATTATTTCCCTCCG--TGc
gi|16 : atactgaacaacaaataacactcatacatgtattctaagggtcattatatcaactgattatatactgtaagatggtaagtagcaagtGTGCACTT--C--ATGTGGAAACA---AC-------AC-----TTGTCG-----CAGGAA----CAG----AC----------A-T----TGGGAATGGA-----AACACTTGCTA---ATT----A-A-CAGTA--T-C-T-TGTCCT-A-CAG--TAAATAATCAATCTA--TAATGATTCCCTTCA--TGGA---------------T---------T---TGGTATTGTTTAA---------TG--------ACCCT---------TACAA-ATATGT-T-------T-ATTTGGATTTTTTT--GCAATTTAGTAaatatcctgaataacgtctgatatttttccccta
gi|8 : taatcaTA----CACAGAAGTTTTCAGCATAATC----TGTAAA-AAA-TAGAAACAATTAATA---GTT----------GTA--TAC-TGT--CCT-A-CAG--TAAATAATCA----A--TATTATTTCCCTCCA--TGGACTTGGTATGTATGGTT---------T---T-----------A---------TG--------ACCCT---------TAGAA-ATGC-T-T----T--T-G--GG---CTTTTT--GTCACTCGGTAT
gi|8 : CTTCT-GTGTAA-T----CAGTAAGAAA-TGAAAACAATTACTA---GTT----------GTA--TAC-TGT--CCT-A-CAG--TAAATAATCA----A--TATTATTTCCCTCAA--TGGA---------------C---------T---T-----------GGTATAGTTTTG--------ACCCT---------TAGAA-ACACAT-TGGGGG--T-G---G---TGTTGT--GTCGTTCCGTATAatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|20 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaaATGGAATGGAAACGCATTTTA---ATC----A-T-TAGCA--TAC-CGT--CCT-A-CAA--TAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACTTGGTATGGT----T---------T---T-----------A---------TG--------ACCCTTAGTATGTGTAGAA-ATATGT-T----G--C-AG-TC---TATTTT--GTCGTTAAGTATA
gi|3 : A-CGGAAACACATACTA---ATT----A-T-TAGTA--TAC-TGT--CCT-A-CAG--TTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACTTGGCATGGT----T---------T---T-----------A---------AG--------ACCCT---------AAGAA-ATATGT-aa
gi|27 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaacaagccattttaaattctatgaaA-TGGAAACATTTGCTT---ATT----A-T-AAGTA--TAC-CAT--CCT-A-CAG--TAGATAATCAGTAGA--TATTATATCCCTCCA--TGAT---------------T---------T---T-----------A---------TG--------ATCCT---------TAGAA-AAATGT-T----G--T----TG---Tacggtgagttgattttcttttgtcta
gi|23 : GGAAACACTTGCTA---ACT----A-T-TAATA--TACGG-T--CCT-A-CAG--TACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA---------------CA--------TGA-T-----------A---------TG--------ACCCT---------GAGAA-ATATTT-T----G--------G---TTTTTT--GTCTTTCATTAT
gi|21 : AACACTTGCTA---ACT----A-T-TAGTA--TAC-GGT--CCT-A-CAG--TACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA---------------CATGATATGGTCG-T-----------A---------TG--------ACCCT---------GAGAA-ATATTT-T----GGTT-T--TT---TTTTTT--GTCTTTCATTATA
gi|24 : AACACTTGCCA---ACT----A-T-TAGTA--TAC-C-G--CCCGA-CAG--TAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCTTGTTATGGT----T---------T---T-----------A---------TA--------ACCAT---------TAGAA-ATATG---------------------TTTTT--GTCGTTCAGTAtc
gi|22 : AACACTCGCAA---ATT----A-T-AAGTA--TAA-TGT--CCT-A-CAG--TAAA-GT--GGTCAA--TATTATTTTCGTCTG--TTGAATTGGTATAGTT---T---------T---T-----------A---------TG--------ACTCT---------TAAAA-AAATGT-T----T--TGG--GG---GTTTTT--GTCGTTCAGTATA
gi|19 : ggAACACATGAAA---AT-----A-T---GGA--TAC-T-T--C---A-CAA--TTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA---------------C---------TAGGT-----------A---------TG--------A
gi|2 : ggccataaaaACTCTTGCTA---ATT----A-T-GAGAA--CAC-T-G--GCA-AACAG--TAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGTTGGTATGGT----T---------T---T-----------A---------TG--------ACCCT---------TAGAA-ATATGT-T----G--T---------TTTTTT--GTGGTTCAGTAtactatttggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|9 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgcgtacagccattttgtgaaatACTTGCTA---CTT----A-C-CA-----------T--CTT-A-CAG--TATATAATCAGTTGA--TAT-----------------A-----------------------------------------A---------TG--------ACCCT---------TAGAATACATGTAT----G--A-G--TG---TTATTT--GTTGTTCAGTAT
gi|4 : TTGTGA---AGT----A-T-TTTTA--TAC-TGT--TCT-A-CAA--TAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA---------------T---------T---TGGT--------A---------TGGTTTTATTACCCT---------TAGAA-ATAGGT-T----G--T-G--TT---ATTTTT--GTTGTTCAGTATAcacggagggaaataatattgatggattatttactgaaggactgtttactaataaaaagtgtttccattccttaactgttatacaaacatctctaacaggtattgtttcagcatgaagtgcacatgcactgattaaatatcctgaataacgtctgatatttttccccta
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcttgtttaaatgttcacaaatgaaatcaagtctttaact--CCT-A-CAG--TAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATTTGGTATGGT----T---------T---T-----------A---------TA--------ACCCT---------TAGAA-ATATGT-T----T--G-A--T----TTTTTT--GTTGTTCAGT
gi|30 : aaaa-A-CAG--TAAATAT-CTG-CGAGTTAGTATTTCCCTTCG--TAGA---------------T---------T---T-----------A---------TG--------ACCCT---------TAGAA-ATAAAT-T----G--G-GC-TC---TTTTTT--catgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|29 : aaGTCAA--TATTACTTCCCTCCA--TGGACATGGTATGGT----T---------T---T-----------A---------TG--------GTCCT---------TAGAA-A
gi|31 : ctgtactgaaagacatttttttATTTCCCTCCA--TGGA---------------C---------T---TGGTATGGTATGA---------TG--------ACTCT---------CAGAA-ATATGT-T----G--T-T--TG---TT-------TCATTCAGTATccatt
gi|26 : aA--TGGT---------------C---------T---T-----------A---------TG--------ACCTA---------TAGGA-ATATGA-T----G--T-G--GGCT-TTTTTT--GTTGTTCAGTAT
gi|13 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcatagt---T-----------G---------TG--------ACCCT---------TAGAA-ATATGT-T----G--T-G--TT---TATTTT--GTTATTCAGTAT
gi|11 : ---T-----------G---------TG--------ACCCT---------TAGAA-ATATGT-T----G--T-G--TT---TATTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Unaligned ( gi|34 ): TTTAATTGATACATTGTTAATAACCTGACAATCACAAAGTTGAAGAT
Alignments
lowQualScore : 4444444444444444444444 11 111111 3333333 11 1111111 1 22222 3333333 1111 11111 666666666666666666 1111 222222222 1111 555555555555555555555 111111 11111111111 1111111 555555555555555555555555555555555555555555 222222222222
lowQualScore : 4 0 6666666666666666666666 77 111111 4 0 6666666 888 11 55 99 1 9999999 0 66666 5 5 6666666 1 1 1 7777 0 0 55555 6 88 0 5 4 111111111111111111 4 66 999 3333 22 555555555 6 3 3 8888 777 0 5555 222222222222222222222 6 99 999999 3 2 0 0 55 55 44444444444 3 555 5555 2222222 2 9999999999 333 4444 3 22 4 22 44 333333333333333333333333333333333333333333 22 999999 888888888 2 2 55 000000000000 7777777 33 0
lowQualScore : . . ...................... .. ...... . . ....... ... .. .. .. . ....... . ..... . . ....... . . . .... . . ..... . .. . . . .................. . .. ... .... .. ......... . . . .... ... . .... ..................... . .. ...... . . . . .. .. ........... . ... .... ....... . .......... ... .... . .. . .. .. .......................................... .. ...... ......... . . .. ............ ....... .. .
lowQualScore : 5 8 1111111111111111111111 88 555555 2 7 8888888 333 00 55 22 0 8888888 0 22222 0 6 0000000 0 4 4 0000 8 8 00000 4 22 8 0 4 444444444444444444 4 11 222 2222 66 444444444 7 3 3 5555 888 9 6666 777777777777777777777 4 55 999999 6 0 5 4 00 55 66666666666 1 444 7777 4444444 1 2222222222 777 5555 5 99 2 88 88 666666666666666666666666666666666666666666 66 333333 000000000 0 1 00 888888888888 2222222 11 5
consensus : TATACTGAACGACAAAAAA---CA---ACG-----TT-T-ATTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGAGG------GAAATAATATCGACCGATTATTTACTGTT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTTNTTANTGGTTAC--ACAGATGCCTG-NA-CCTCTGACAGGTATTGTTTCCGCAT--GTGAAGTNCACGTGCACCAA-TAGGCTGAAAAAATCCGTAC----AAAATGTTTCG--CNTAGACCTGACACAATCACA-AAGTTAAA-A----------T-------TT-AAAT--GTTCGCGAACG---AAATCAAG-------AAT-TT-TAA-CT-T--TGTGAT---TGTGTC----AGGTTATTAA---C---GC----G-----TCTATGCGAAACATTTTGCACGGA--TTT-TT---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAACTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTA-TGGT----T------T--T------ATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CA---ACN-----TT-T-ATTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGAGG------GAAATAATATCGACCGATTATTTACTGTT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTCCTTAACGGTTAC--ACAAATGC-TG-TA-CCTCTGACAGGTATTGTTTCCGCAT--G--AAGTGCACGTGCACCGATTAGGCNGAAAAAATCCGTGC----AAAATGTTTCG--CATAGACACGACACAATCACA-AAGTTAAA-A----------T-------TT-AAAT--GTTCGCGAACG---AAATCAAG-------AAT-TT-TAA-CT-T--TGTGAT---TGTGTC----AGGTTATT-----C---GC----G-----TCTATGTGAAACATTTTGCACGGA--TTT-TN---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAACCG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTA-TG------T------T--T------ATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA---ACT-----TT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGAGGTGGGGGGGAATAATATTGACCGATTATTTACTGTTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTTAC--ACAAATGC-TG-TAACCTCTGACACGTATTGTTCCTGCAT--A--AAGTGCATTTGCACAAATTAGACAGAAAAAAACTGTGC----AAC-TGTTTCG--CACAAACACGACACAGTCACA-AAGTTAAA-A----------T-------TT-AAAT--ATTCACGAACA---AAATCAAG-------AAT-TT-TAA-CT-TG-TGTGAT---TGTGTC----AGGTTAGC-----C---GC----A-----TCTATGTGAAATATTTTGCATAGA--TTT-TA---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAACTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-----------------------------------T------T--T------ATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : -------AAT-TT-TAA-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAA---C---GT----G-----TCTATGCGAAA-ATTTTGCACGGA--TTT-TA---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAACTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttca--T------GTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : --T------GTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : GTGAAC-A----------T-------TT-AAAT--G------AGCC---ATTTCAA---------AT-TT-TAA-CT-T--TGTGAT---TGTGTC----AGGTTATTAA---CAAAGT----G-----CCTATGTAAAACATTTTGCACAGG--TTT-T-----------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAACCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CAA-CTCT--TGTGGTAAATTTATC----AGCTTATT-----A---AC----AAATTATCAATGTGAAACATTTTACGCGGA--TTTAGT---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Aaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT---------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTATTG------T------T--TA-----ATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA-CCTCTGACAGGTATT-TTTCCACAT--GTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCA--CTTAGACCTGACACAATCACA-AAGTTAAA-AGTTAAAATTCT-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TAA-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA-CCTCTGACAGGTATT-TTTCCACAT--GTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCA--CTTAGACCTGACACAATCACA-AAGTTAAA-AGTTAAAATTCT-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TAA-TT-T--TGTGA
gi|19 : GGCCATAAAATCATACCTAGTCTAT-GGAGG------GACATAATATCGACCGATTATTAATTGT
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTA-TGAT----T------T--T------ATGGCCgaagtatccatattttcatgtgtttactatttggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : ATACTGAA------AAAA---CACTGACA-----T----ATTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGAGG------GAAGTAATATTATCTGATTATTTACTGT------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAA--AACAATGC-CACTT-CCTCTGGCAGGTATTGTTTCCGCATTAG--AA--------ACACCAACTAGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTGTGAACATG---TAA--AC--AAGCCATG-A----------T-------TTCAGAT--TTT----AAC------------------------T-TAA-AT-T--TGTGAT---TGTATC----AGATTAAC-----A---GT----G-----TCTATCAGAAACATTTTGCATGGAT-TTT-TT---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT----TGT--------------GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTA-TGGT----T------T--T------ATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTA-TGGT----T------T--T------ATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATA-TG------G------TCGT------ATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTA-TAGTT---T------T--T------ATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CA-TG-------------A--T------ATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : TACTGAACGACAAAAA----CA--------------T-ATTTCTAATGGTTATAAAACCATAACAAGCCCA-TGGAGG------GAAATACTATCGGCCGATTCTTTACTGTC------GGGCGGTATACTA-A-TAGTTGGCAAGTGTT
gi|25 : GTGAAACATTTTGCACAGT--TTT-TTTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAACTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC---ACA-----TCAT-ATTCCTATAGGTCATAAGACCATACTAc
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCCA--T-GA-T---------------------------------T------T--T------ATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACAGTAACA-AGGTTAAA-AAGCTTG----T-------TT-AAAT--ATTCACAAAAG---AAATGATG---------T-CTGTAA-CT-T--TGTGA
gi|29 : ttatatacacaagttaataaccccagAAAGA---CA---TTT-----TT-T-TTTTCTAAGGACCATAAAACCATACCATGTCCA-TGGAGG------GAAGTAATATTGACCCATT
gi|3 : ctgtactgTCATAGAATTTAAA-A----------TGGCTTGTTT-AAAT--GTTCACGAATG---AAATCAAG-------ACT-TT-TAA-CT-AAATGTGAT---TGTGTTTG--GGGTTATT-----A---ACAACTG-----TTTGTGCGAA-TATTT-GCGTATA--TTTATT---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAACAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTA-TG------G------T--TA-----ATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAAATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCA-TGGT----T------T--T------AAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|3 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaa-T-ATTTCTTAGGGTCTTAAAACCATGCCAAGTCCAT-GGAAG------GAAATAATATCAACTGATTATTAACTGT------AGGACAGTATACTA-A-TAATTAGTATGTGTTTCCGTTTCATAta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaacaagccattttaaattcACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T-----------------------------------------T------ATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--tgtacggtgagttgattttcttttgtcta
gi|31 : aaATACTGAATGA-AACAAA---CA---ACA-----T----ATTTCTGAGAGTCATCATACCATACCAAGTCCA-TGGAGG------GAAAT
gi|33 : aTATACTGAAAGACAAAA------------G-----TT-T-TTTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CAA-CT-T--TGTGAT-----TGTC----AGGTTATT-----a
gi|35 : tttaattgatacattgttTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGAGG------GATATAATAgat
gi|4 : TCACA-AAGTTAAAGA----------C-------TT-GATTTCATTTGTGAACATTTAAA-CAAGCCATTTCAAT-TT-TAAACT-T--TGTGAC---TGT--C----AGGTTATTAACAAT---GT----G-----CCGATGTAAAACATTTTGCA-GAA--TAT-TT---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAACTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT--TGTT----T------T--T------TTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAAATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGATT-T-G-----------------GTA-TGGT----T------T--T------ATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTA-TGGT----T------T--T------ATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT--CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAACTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTA-TGAT----T------T--T------ATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG---A-G-----TT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-AGG------GAACTAAAAATGACTGATTATTTATT-CT---GT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTTACTCGCAGAT-C-TG-CA-CCTCTGACAGGTATTGTTTCCGCAT--G--AAGTGCACG---------TAGGCTGAACAAATCCGTAC----AAAATGT-------ATA-ACCTGACACAATCACG-AAGTTATA-A----------G-------TT-AAA---ATTTG-AAACG---Ac
gi|7 : -------AAT-TA-CAA-CT-----GTGAT---TGTATC----AGGTTATTAA---C---AC----A-----CTTATGCGAAACATTTTGCA--GATTTTT-TT---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAACTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCT-TG------A------T--T------ATGAACTT---------TAGAA-ATctcgtttaaatgttcaggaacgaattaaagtctcagtccactctgtg
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCT-----GTAAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAA----TCAA--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTA-TGTATGGTT------T--T------ATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC---ACCCCCAATG-T-GTTTCTAAGGGTCA--AAACTATACCAAGTCCATT-GAGG------GAAATAATAT----TGATTATTTAC---T---GTAGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATTAC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAACAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTA-TA------TAATCAGT--TGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 1 55555555555555555555555 111111 4444444 11111 1 1 444444 11111 1 888888888888888888888888888888888888 1111 222222222 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 0 0 33333333333333333333333 9 6 999999 6 1 2 5555555 77777 0 0 2 1 1 0 99 1 5 99 0 666 3 3 000000 1 1 1 77777 0 1 1 3 2 6 5 444444444444444444444444444444444444 4 66 666 3333 3 888888888 6 3 6666 3 8888 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . . ....................... . . ...... . . . ....... ..... . . . . . . .. . . .. . ... . . ...... . . . ..... . . . . . . . .................................... . .. ... .... . ......... . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 0 6 33333333333333333333333 8 7 222222 0 4 5 5555555 22222 2 2 0 0 0 0 22 0 0 00 0 888 8 2 666666 0 4 4 88888 8 4 0 2 5 7 0 000000000000000000000000000000000000 4 11 444 2222 9 000000000 2 1 5555 1 3333 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAANGACAAAAAA---CA---AC-----GTTT-NTTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGAGG------GAAATAATATTGACCGATTATTTACTGT---TGTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AACCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-TAGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACA-AAGTTA--------------AA-A----------T-------TT-AAAT--GTTCACGAACG---AAATNAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CA---AC-----GTTT-ATTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGAGG------GAAATAATATCGACCGATTATTTACTGT---TGTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTTNTTANTGGTT-AC--ACAGATGCCTG-NACCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-TAGGCTGAAAAAATCCGTAC----AAAATGTTTCGCNTAGACCTGACACA-ATCACA-AAGTTA--------------AA-A----------T-------TT-AAAT--GTTCGCGAACG---AAATCAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA---AC-----TTTTTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGAGGTGGGGGGGAATAATATTGACCGATTATTTACTGTTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATG-CTGTAACCTCTGACACGTATTGTTCCTGCA--TAAAGTGCATTTGCACAAATTAGACAGAAAAAAACTGTGC-----AACTGTTTCGCACAAACACGACACA-GTCACA-AAGTTA--------------AA-A----------T-------TT-AAAT--ATTCACGAACA---AAATCAAG-------AAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTA--GCC---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : -------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : GTGA--------------AC-A----------T-------TT-AAAT--G------AGCC---ATTTCAA---------AT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Aaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AACCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTA--------------AA-AGTTAAAATTCT-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AACCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTA--------------AA-AGTTAAAATTCT-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA------AAAA---CACTGAC-----AT---ATTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGAGG------GAAGTAATATTATCTGATTATTTACTGT------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCCAC-TTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACTAGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAAC-AAGCCA--------------TG-A----------T-------TTCAGAT--TTT----AAC------------------------T-TA----A-AT-T--TGTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : -T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTATc
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACA-AGGTTA--------------AA-AAGCTTG----T-------TT-AAAT--ATTCACAAAAG---AAATGATG---------T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA---TT-----TTTT-TTTTCTAAGGACCATAAAACCATACCATGTCCA-TGGAGG------GAAGTAATATTGACCCATT
gi|3 : ctgtactgTCATAGAATTTA--------------AA-A----------TGGCTTGTTT-AAAT--GTTCACGAATG---AAATCAAG-------ACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA-----------------GTTT-TTTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGAGG------GATATAATAgat
gi|4 : TCACA-AAGTTA--------------AAGA----------C-------TT-GATTTCATTTGTGAACATTTAAA-CAAGCCATTTCAAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG---A------GTTT--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-AGG------GAACTAAAAATGACTGATTATTTATT-C---TGT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CACCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGT---------AGGCTGAACAAATCCGTAC----AAAATGT-----ATA-ACCTGACACA-ATCACG-AAGTTATAAGTTAAAATTTGAA-ACGACTCG---T-------TT-AAAT--GTTCAGGAACG---AATTAAAG---------T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : -------AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC---ACCCCCAATGT-GTTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-AGG------GAAATAATATTGA----TTATTTACTGT------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 666666666666666666666666 111111 44444444444444 11111 1111 111 1 11 333333 11111 111111 99999999999999999999999 1111 222222222 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 6 1 555555555555555555555555 7 4 5 666666 5 1 6 55555555555555 77777 0 0 1 1 0000 1 5 0 88 444 0 55 3 5 555555 1 1 1 77777 1 1 6 0 2 6 5 444444 5 88888888888888888888888 5 66 3333 22 555555555 6 3 6666 3 8888 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . . ........................ . . . ...... . . . .............. ..... . . . . .... . . . .. ... . .. . . ...... . . . ..... . . . . . . . ...... . ....................... . .. .... .. ......... . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 6 6 111111111111111111111111 1 3 7 444444 7 0 7 88888888888888 22222 2 2 0 0 2222 0 0 8 66 000 0 66 8 6 888888 0 4 4 88888 4 0 4 7 5 7 0 444444 0 55555555555555555555555 0 99 0000 99 888888888 2 1 5555 1 3333 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN---AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--T---TGTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-A--CACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-TAGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACA-AAGTTA------AA-AGTT--AA--------T-------TT-AAAT--GTTCACGAACG---AAATNAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAANGACAAAAAA---CA---AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--T---TGTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-A--CACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-TAGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACA-AAGTTA------AA-A---------------T-------TT-AAAT--GTTCACGAACG---AAATNAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA---AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTAC--TG--TTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-A--CACAAATG-CTGTAA---CCTCTGACACGTATTGTTCCTGCA--TAAAGTGCATTTGCACAAATTAGACAGAAAAAAACTGTGC-----AACTGTTTCGCACAAACACGACACA-GTCACA-AAGTTA------AA-A---------------T-------TT-AAAT--ATTCACGAACA---AAATCAAG-------AAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTA--GCC---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : -------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : -------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Atgaaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatca--CACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTA------AA-AGTTAAAATTC-----T-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|18 : g--CACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTA------AA-AGTTAAAATTC-----T-------TC-AAAT--GCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA------AAAA---CACTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTAC--TG--T------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAA--AACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACTAGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAAC-AAGCCA------TG-A---------------T-------TTCAGAT--TTT----AAC------------------------T-TA----A-AT-T--TGTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC---AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGTGATT---TGT--GACAGTc
gi|26 : c-T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACA-AGGTTA------AA-AAGCTTG---------T-------TT-AAAT--ATTCACAAAAG---AAATGATG---------T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataTGTACTGAAAGACAT-------------T-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : cTCATAGAATTTA------AA-A---------------TGGCTTGTTT-AAAT--GTTCACGAATG---AAATCAAG-------ACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA-----------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGA-GG------GATA-TAATAgat
gi|4 : TCACA-AAGTTA------AAGA---------------C-------TT-GATTTCATTTGTGAACATTTAAA-CAAGCCATTTCAAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG---A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTAT--T---C---TGT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCA--TGAAGTGCACG---------TAGGCTGAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACG-AAGTTATAAGTTAA-AATTTGAAACGACTCGT-------TT-AAAT--GTTCAGGAACG---AATTAAAG---------T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : -------AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC---ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTAC--TG--T------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-A--CACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 5555555555555555555555 111111 44444444444444 11111 1 111 1 1 4444444 1111 66666666666666666666666 1111 222222222 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 6 2222222222222222222222 7 4 5 666666 5 1 6 55555555555555 77777 0 0 1 1 0 99 1 0 88 444 0 5 3 3 0000000 1 1 1 7777 0 1 1 6 0 2 6 5 0 5 99999999999999999999999 5 0 3333 1 0 111111111 6 3 6666 3 8888 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . ...................... . . . ...... . . . .............. ..... . . . . . .. . . .. ... . . . . ....... . . . .... . . . . . . . . . . ....................... . . .... . . ......... . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 7 4444444444444444444444 1 3 7 444444 7 0 7 88888888888888 22222 2 2 0 0 0 22 0 8 66 000 0 8 8 2 6666666 0 4 4 0000 8 4 0 4 7 5 7 0 4 0 22222222222222222222222 0 2 0000 0 4 666666666 2 1 5555 1 3333 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACA-AAGTTAAA-A--GTTNAAATT------------TTT-AAATGTTCACGAACG---AAATNAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACA-AAGTTAAA-A--GTTAA----------------TTT-AAATGTTCACGAACG---AAATNAAG-------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA-AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTAC--TG--TTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATGC-TGTAA---CCTCTGACACGTATTGTTCCTGCATA--AAGTGCATTTGCACAAA-TTAGACAGAAAAAAACTGTGC----AAC-TGTTTCGCACAAACACGACACA-GTCACA-AAGTTAAA-A-----------------------TTT-AAATATTCACGAACA---AAATCAAG-------AAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTAGC--C---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : -------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : -------AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Atgaaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTAAA-A--GTTAAAATTC-----------TTC-AAATGCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACA-AAGTTAAA-A--GTTAAAATTC-----------TTC-AAATGCTCACGAACA---AAATAAAG---------TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA----AAAACA---CTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTAC--TG--T------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACT-AGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAAC-AAGCCA--------TGA----------------TTTCAGATTTT----AAC-------TTA---------AAT---------------T--TGTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC-AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGTGATTT---GT--GACAGTc
gi|26 : c-T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACA-AGGTTAAA-AA-GCTTG----------------TTT-AAATATTCACAAAAG---AAATGATG---------T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA-TT-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : ctgtactgTCATAGAATTTAAA-ATGGCTTG----------------TTT-AAATGTTCACGAATG---AAATCAAG-------ACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA---------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGA-GG------GATA-TAATAgat
gi|4 : TCACA-AAGTTAAAGA--CTTGA----------------TTT-CA---TTTGTGAACATTTAAA-CAAGCCATTTCAAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG-A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTAT--T---CT---GT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGT----------AGGCTGAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACG-AAGTTATA-A--GTTAAAATTTGAAACGACTCGTTT-AAATGTTCAGGAACG---AATTAAAG---------T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : -------AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC-ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTAC--TG--T------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 5555555555555555555555 111111 44444444444444 11111 1 111 1 1 4444444 1111 44444444444444444444444444444444 11 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 6 2222222222222222222222 7 4 5 666666 5 1 6 55555555555555 77777 0 0 1 1 0 99 1 0 88 444 0 5 3 3 0000000 1 1 1 7777 0 1 1 6 0 2 6 77777777777777777777777777777777 0 2 4 66 2 0 44 6 3 6666 3 8888 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . ...................... . . . ...... . . . .............. ..... . . . . . .. . . .. ... . . . . ....... . . . .... . . . . . . . ................................ . . . .. . . .. . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 7 4444444444444444444444 1 3 7 444444 7 0 7 88888888888888 22222 2 2 0 0 0 22 0 8 66 000 0 8 8 2 6666666 0 4 4 0000 8 4 0 4 7 5 7 55555555555555555555555555555555 9 5 2 99 8 2 00 2 1 5555 1 3333 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAAA-GTTAAA----AT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAAA-GTTNAA----AT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA-AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTAC--TG--TTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATGC-TGTAA---CCTCTGACACGTATTGTTCCTGCATA--AAGTGCATTTGCACAAA-TTAGACAGAAAAAAACTGTGC----AAC-TGTTTCGCACAAACACGACACA-GTCACAAAGTTAAAA-------------------T------------TTAAATATTCACGAACAAA--ATCAAGAAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTAGC--C---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Atgaaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAAA-GTTAAA----AT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAAA-GTTAAA----AT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA----AAAACA---CTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTAC--TG--T------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACT-AGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAACAAGCCATGA-TTTCAG----AT----T-T------------T------------AAC----------------T-TA----A-AT-T--TGTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC-AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGTGATTT---GT--GACAGTc
gi|26 : c-T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACAAGGTTAAAAAGCT--------T----G-T------------TTAAATATTCACAAAAGAA--ATGATG--T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA-TT-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : ctgtactgTAGAA-TTTAAA----ATGGCTTGT------------TTAAATGTTCACGAATGAA--ATCAAGACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCtgaaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA---------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGA-GG------GATA-TAATAgat
gi|4 : TCACAAAGTTAAAG-ACTTGATTTCAT----T-T------------GTGAACATTTA--AACAAGCCATTTC-AAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG-A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTAT--T---CT---GT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGT----------AGGCTGAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACGAAGTTATAA-GTTAAA----AT----T-TGAAACGACTCGTTTAAATGTTCAGGAACGAA--TTAAAG--T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC-ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTAC--TG--T------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 5555555555555555555555 111111 44444444444444 11111 1 111 1 1 4444444 1111 4444444444444444444444444444444 1111 1111 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 6 2222222222222222222222 7 4 5 666666 5 1 6 55555555555555 77777 0 0 1 1 0 99 1 0 88 444 0 5 3 3 0000000 1 1 1 7777 0 1 1 6 0 2 6 5 3333333333333333333333333333333 0 2 4 66 1 2222 6 3 6666 3 0000 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . ...................... . . . ...... . . . .............. ..... . . . . . .. . . .. ... . . . . ....... . . . .... . . . . . . . . ............................... . . . .. . .... . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 7 4444444444444444444444 1 3 7 444444 7 0 7 88888888888888 22222 2 2 0 0 0 22 0 8 66 000 0 8 8 2 6666666 0 4 4 0000 8 4 0 4 7 5 7 0 4444444444444444444444444444444 9 5 2 99 0 6666 2 1 5555 1 2222 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-A-GTTAA---AAT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-A-GTTAA---AAT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA-AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTAC--TG--TTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATGC-TGTAA---CCTCTGACACGTATTGTTCCTGCATA--AAGTGCATTTGCACAAA-TTAGACAGAAAAAAACTGTGC----AAC-TGTTTCGCACAAACACGACACA-GTCACAAAGTTAAA-A------------------T------------TTAAATATTCACGAACAAA--ATCAAGAAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTAGC--C---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Atgaaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-A-GTTAA---AAT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-A-GTTAA---AAT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA----AAAACA---CTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTAC--TG--T------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACT-AGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAACAAGCCATG-A-TTTCA---GAT----T-T------------T------------AAC------TTA--AAT-TT----------------GTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC-AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGTGATTT---GT--GACAGTc
gi|26 : c-T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACAAGGTTAAA-AAGCT-------T----G-T------------TTAAATATTCACAAAAGAA--ATGATG--T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA-TT-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : ctgtactgTAGA-A-TTTAA---AATGGCTTGT------------TTAAATGTTCACGAATGAA--ATCAAGACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCtgaaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA---------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGA-GG------GATA-TAATAgat
gi|4 : TCACAAAGTTAAAGA-CTTGATTTCAT----T-T------------GTGAACATTTA--AACAAGCCATTTC-AAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG-A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTAT--T---CT---GT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGT----------AGGCTGAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACGAAGTTATA-A-GTTAA---AAT----T-TGAAACGACTCGTTTAAATGTTCAGGAACGAA--TTAAAG--T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC-ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTAC--TG--T------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 5555555555555555555555 111111 44444444444444 11111 1 111 1 1 4444444 1111 4444444444444444444444444444444 1111 1111 1111 33333333 1111111 11111111111 22222222222222222222222 222222222222
lowQualScore : 6 2222222222222222222222 7 4 5 666666 5 1 6 55555555555555 77777 0 0 1 1 0 99 1 0 88 444 0 5 3 3 0000000 1 1 1 7777 0 1 1 6 0 2 6 5 3333333333333333333333333333333 0 2 4 66 1 2222 6 3 6666 3 0000 777 0 5555 33333333 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 44 77777777777777777777777 999999 1 3333 777777777 1 1 44 222222222222 6666666 22
lowQualScore : . ...................... . . . ...... . . . .............. ..... . . . . . .. . . .. ... . . . . ....... . . . .... . . . . . . . . ............................... . . . .. . .... . . .... . .... ... . .... ........ . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. ....................... ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 7 4444444444444444444444 1 3 7 444444 7 0 7 88888888888888 22222 2 2 0 0 0 22 0 8 66 000 0 8 8 2 6666666 0 4 4 0000 8 4 0 4 7 5 7 0 4444444444444444444444444444444 9 5 2 99 0 6666 2 1 5555 1 2222 888 9 6666 66666666 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 66 33 88888888888888888888888 111111 8 9999 000000000 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-A-GTTAA---AAT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-A-GTTAA---AAT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA-AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTAC--TG--TTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATGC-TGTAA---CCTCTGACACGTATTGTTCCTGCATA--AAGTGCATTTGCACAAA-TTAGACAGAAAAAAACTGTGC----AAC-TGTTTCGCACAAACACGACACA-GTCACAAAGTTAAA-A------------------T------------TTAAATATTCACGAACAAA--ATCAAGAAT-TT-TA----A-CT-TG-TGTGAT---TGTGTC----AGGTTAGC--C---G---CATCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-------------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---G---TGTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGA-C-T-t
gi|11 : tctgtgaacatttaaacaagagatttcaTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtg
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : AAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAG---TGCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : AT-TC-CA----A-CTCT--TGTGGTAAATTTATC----AGCTTATTAAC---AAATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Atgaaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATT-T-G-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-A-GTTAA---AAT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGTGCACCA-------CTGTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-A-GTTAA---AAT----TCT------------TCAAATGCTCACGAACAAA--ATAAAG--TCTT-TA----A-TT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGA-C-TAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA----AAAACA---CTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTAC--TG--T------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--------ACACCAACT-AGGCGGAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAACAAGCCATG-A-TTTCA---GAT----T-T------------T------------AAC------TTA--AAT-TT----------------GTGAT---TGTATC----AG---ATTAACA--G---TGTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGT-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGA-CAT-G-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTGT-TGAA-T-T-G-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGA------------------------CAT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCT-T-G-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC-AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGTGATTT---GT--GACAGTc
gi|26 : c-T-A-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC--------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACAAGGTTAAA-AAGCT-------T----G-T------------TTAAATATTCACAAAAGAA--ATGATG--T-CTGTA----A-CT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA-TT-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : ctgtactgTAGA-A-TTTAA---AATGGCTTGT------------TTAAATGTTCACGAATGAA--ATCAAGACT-TT-TA----A-CT-AAATGTGAT---TGTGTTTG--GGGTTATTAAC---AAC-TGTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACT-T-G-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACT-T-G-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCtgaaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-T-T---------------------------------------TATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACT-T-G-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA---------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----A-CT-T--TGTGAT-----TGTC----AGGTTATTAAC---a
gi|35 : tttaattgatacattTTCTAAAGGTCATACAATGATACCAAGTCCA-TAGA-GG------GATA-TAATAgat
gi|4 : TCACAAAGTTAAAGA-CTTGATTTCAT----T-T------------GTGAACATTTA--AACAAGCCATTTC-AAT-TT-TA----AACT-T--TGTGAC---TGT--C----AGGTTATTAACAATG---TGCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGA-C-T-G-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGA-T-TTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATT-T-G-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATT-T-G-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG-A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTAT--T---CT---GT--GACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGT----------AGGCTGAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACGAAGTTATA-A-GTTAA---AAT----T-TGAAACGACTCGTTTAAATGTTCAGGAACGAA--TTAAAG--T-CT-CAGTCCA-CT-C--TGTGc
gi|7 : AAT-TA-CA----A-CT-----GTGAT---TGTATC----AGGTTATTAAC---A---CACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAA-C-A-G-----------------TCTT------GA-------TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccatttcaA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACT-T-G-----------------GTATGTAT--GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC-ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTAC--TG--T------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGATG---------------------TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--TGAC-T-T-GCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
blockSeqs : C CACCACCCCCAATGTG T G T . T A G GGTGATTTGT TATAC T A A TC G A CTT G T T G ACTAGG T T A AAAA A T G C T G GTTAAAATTTGAAACGACTCGT C A CC A AGAC C G GTCC A AAA AAA TGAC AAAGT C C TT TTTTT A T CA GA TTTTTGAGGCA C GGC TCAG T GTAAA T AGTCTTTAAC GGA GTAA G TT A GT TT TTGCTACTTACCATCTTACA ATAATC T GATA TAGTATGTG T T AC TTTGGAT GATTTTC TA
blockSeqs : A AAAGCCCACATCATA T G . . . G C TCTGT TAA G A . . G A . G T T G AGG T T A . A T G C . . TTTAAAATGGCTTGT C A . A CAA C . . . CT . TG AAATT T C T AGT . G . . . . . G . . . . . . C . T . T TTTG GTAT . . . . . A GTTTTT . .
blockSeqs : C AAACCCGAGTTT C G . . . G G TGTG . C C . . G C . . A G A . G A C . G T A G . . CTTGATTTCATTT C G . T AG . . . . T . . AATGT T C . ATT . C . . . . . G . . . . . . G . T . . CTAG . . . . . . . TGGGCT . .
blockSeqs : C GACATTTTTTT T G . . . G . TGTA . G . . . . . . . T A G . . . . C . . GTTAAAATTCT C G . G AG . . . . T . . AACT A T . AAT . G . . . . . G . . . . . . T . T . . GTTG . . . . . . . CTTTGT . .
blockSeqs : . CACTGACATA . . . . . . . . . . . . GTTAAAATTCT G A . C AA . . . . T . . AGT T C . TA . A . . . . . G . . . . . . T . T . . CTTG . . . . . . . CAGTC . .
blockSeqs : GTTTT . . . . . . TTTCAGATTT . G . T TG . . . . T . . GT C T . TT . G . . . . . G . . . . . . A . C . . CATG . . . . . . . TGGGG . .
blockSeqs : . AGCTTGT . . . A AG . . . . T . . AC T . . TT . G . . . . . G . . . . . . T . G . . CTTG . . . . . . . GGCTC . .
blockSeqs : . . . . T . . C . . TT . G . . . . . G . . . . . . T . T . . CTTG . . . . . . . TGTT . .
blockSeqs : . . . . T . T . A . . . . . T . . . . . . A . G . . CTTG . . . . . . . TGTT . .
blockSeqs : . . . . C . . . . . . G . . . . . . T . C . . CTTG . . . . . . . GGAG . .
blockSeqs : . . . . . . . . . . . . . . . T . C . . TTTG . . . . . . . TGAG . .
blockSeqs : . . . . . . . . . . . . . . . T . C . . TTTG . . . . . . . TTTG . .
blockSeqs : . . . . . . . T . T . . TTTG . . . . . . . TGTT . .
blockSeqs : . . . . . T . C . . CTTG . . . . . . . TGAT . .
blockSeqs : . . . . T . T . . TTG . . . . . . . TGGG . .
blockSeqs : . . . . T . T . . CTG . . . . . . . AGTG . .
blockSeqs : . . . . . . T . . CAG . . . . . . . TTG . .
blockSeqs : . . . . . . A . . TT . . . . . . . TGT . .
blockSeqs : . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . G . .
blockSeqs : . . . . . . . . .
blockSeqs : . .
blockSeqCons : ****** TGTG********** A* ******* NTTAAAATTT********************* AG** T*** AAGT**** CTTG*******************
originalCons : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTAC--TG--TT---GTAGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCAA-T-AGGCTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-A-GTTAA---AAT----T-T------------TTAAATGTTCACGAACGAA--ATNAAGAAT-TT-TA----A-CT-T--TGTGAT---TGTGTC----AGGTTATTAAC---G---CGTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGA-T-T-G-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
finalCons : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTACTGTG----------GGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTGA-A---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGTGCACCA-------CTGAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-ANTTAAAATTT---------------------TTAAATGTTCACGAACGAA--ATNAAG--T-TT-TA----A-CTT---TGTGAT---TGTGTC----AGGTTATTAACAAGT----GTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGACTTG-------------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT
Alignments
lowQualScore : 5555555555555555555555 111111 222222 11111 1 111 1 1 111111 2222222222 1111 444444444444444444444444444444 1111 1111 1111111 11111111111 11111111111111111 222222222222
lowQualScore : 6 2222222222222222222222 0 1 6 6 999999 6 1 6 333333 77777 0 0 1 1 0 99 1 0 88 444 0 5 1 111111 3 4444444444 1 1 7777 0 1 1 6 0 2 6 5 222222222222222222222222222222 0 66 5 0 2 99 6 3 6666 8888 777 6 5555 9999 4 1 6 99 6666666 3 2 0 0 55 55 44444444444 3 555 5555 2 66666 0 2 8888888888 333 4444 2 22 3 22 22 22 55555555555555555 555555 1 3333 666666666 1 1 44 222222222222 6666666 22
lowQualScore : . ...................... . . . . ...... . . . ...... ..... . . . . . .. . . .. ... . . . ...... . .......... . . .... . . . . . . . . .............................. . .. . . . .. . . .... .... ... . .... .... . . . .. ....... . . . . .. .. ........... . ... .... . ..... . . .......... ... .... . .. . .. .. .. ................. ...... . .... ......... . . .. ............ ....... ..
lowQualScore : 7 4444444444444444444444 6 7 7 7 222222 7 0 7 000000 22222 2 2 0 0 0 22 0 8 66 000 0 8 0 888888 2 8888888888 4 4 0000 8 4 0 4 7 5 7 0 444444444444444444444444444444 9 99 4 5 3 22 2 1 5555 3333 888 4 6666 9999 4 7 4 55 1111111 6 0 5 4 00 55 66666666666 1 444 7777 9 77777 1 1 8888888888 555 2222 8 88 5 55 44 00 22222222222222222 000000 7 7777 777777777 7 8 33 000000000000 2222222 66
consensus : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTACTGT------GGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGT-GC-ACCA--CT------GAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-ANTTAA---AAT----T-T------------TTAAATGTTCA--CGAACGAAATCAAG--T-TT-TA----ACT-T--TGTGAT---TGTGTC----AGGTTATTAACAA-GT-GTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGACTTG-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
Reference ( family-3959 ) : TATACTGAACGACAAAAAA---CN-AC-----GTT-TN-TTTCTAAGGGTCATAAAACCATACCAAGTCCATTGGA-GG------GAAA-TAATATTGACCGATTATTTACTGT------GGGACGGTATACTA-A-TAATTAGCAAGTGTTTCCATTTNTTANTGGTT-AC--ACAGATGCCTG-AA---CCTCTGACAGGTATTGTTTCCGCATGTGAAGTNCACGT-GC-ACCA--CT------GAAAAAATCCGTAC----AAAATGTTTCGCTTAGACCCGACACA-GTCACAAAGTTAAA-ANTTAA---AAT----T-T------------TTAAATGTTCA--CGAACGAAATNAAG--T-TT-TA----ACT-T--TGTGAT---TGTGTC----AGGTTATTAACAA-GT-GTCTATGCGAAACATTTTGCACGGA--TTT-T-T---CAGCCTAA-TCGGTGCACGTGCACTTCATGCGGAAACAAT--ACCT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACCGTCCTACAGTAAATAATCGGTCGA--TATTATTTCCCTCCA--TGGACTTG-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T-G-TG---TT-------TTTT--GTCGTTCAGTATA
gi|1 : TATACTGAAAGACAAAAAA---TA-AC-----TTT-TTATTTCTAAGGGTCATAAAACTAAACCAAGTCTATTGGA-GGTGGGGGGGAA-TAATATTGACCGATTATTTACTGTTACTGTAGGACGGTATACTA-A-TAATTAGCAAATGTTTCCATTTATTATTGGTT-AC--ACAAATGC-TGTAA---CCTCTGACACGTATTGTTCCTGCATA--AAGTGCATTT-GC-ACAA--ATTAGACAGAAAAAAACTGTGC----AAC-TGTTTCGCACAAACACGACACA-GTCACAAAGTTAAA-A-----------------T------------TTAAATATTCA--CGAACAAAATCAAGAAT-TT-TA----ACT-TG-TGTGAT---TGTGTC----AGGTTAGCCGCA------TCTATGTGAAATATTTTGCATAGA--TTT-T-A---CAGCCTAA-TCGGTGCACGTGCACTTCATGTAGAAACAAT--ACTT--GTTAGAGATA-----------CACGC-T---TTT---GTGTAA-CTG-----TTAATGGATGG-CAACA----------CTTGCTAA---TTA----TTAGTA--TACC-TCCTACAGTATATATTCAGTCGA--TATTATTTCTCTCCA--TGGA-----------------------------------T----TTATGACCCT---------TAGAA-ATATG-T--TG---T-A-TG---TT-------TTTT--GTTGTTCAGTATA
gi|10 : TCAAA--T-TT-TA----ACT-T--TGTGAT---TGTGTCTGACAGGTTATTAAC---GT-GTCTATGCGAAA-ATTTTGCACGGA--TTT-T-A---CAGCCTAA-TATGTACACATGCACTACACGTGAAAACAAT--GCAT--GTCAGAGGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----ATAAGGAATG---AACA----------CTTGCAAA---TTA----T--GTATTTGCATTCCTACAGTAAATAATCGATCAA--TATTATTTCCCTCCA--TGGACTTG-----------------t
gi|11 : tctgtgaacatttaaacaagagattTGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTAT
gi|13 : TGTGACCCT---------TAGAA-ATATG-T--TG---T-G-TT---TA-------TTTT--GTTATTCAGTATtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgta
gi|14 : TCAAA--T-TT-TA----ACT-T--TGTGAT---TGTGTC----AGGTTATTAACAAAGT-GCCTATGTAAAACATTTTGCACAGG--TTT-T------------A-TT--TTC-----CACTTCCAGCGAAAACAAT--ACCT--GTCAAAGGTA-----------GAGGC-AGGCCTT---GTGTAA-CCA-----TTAAGGAA------ACA----------CTTGCTAA---TTA----TGAGTA--TACTGCCCTACtgaaactgttgctacactgatgttcaggttgactctcattatctcaaatcttgatttaagaaataatgtttccattaccacacagaccaagtgaagttaagaaaatcaaatattaagttactgtattgaatgaaaattctgacaaaatgattaggtataaagtacatatcatgt
gi|15 : --T-TC-CA----ACTCT--TGTGGTAAATTTATC----AGCTTATTAACAA-ATTATCAATGTGAAACATTTTACGCGGA--TTTAG-T---CAGCATAA-TCGTTGCACGTGCATTTCATGCAGAAACAAC--Aaatggctcatttaaatgttcacaaaagaaaaaagt
gi|16 : GTGCACTTCATGTGGAAACAAC--ACTT--GTCGCAGGAA-----------CAGAC-A---TT----------------------GGGAATGG-AAACA----------CTTGCTAA---TTA----ACAGTA--TCTTGTCCTACAGTAAATAATCAATCTA--TAATGATTCCCTTCA--TGGATTTG-----------------GTAT------TG-TT----TAATGACCCT---------TACAA-ATATGTT--TA---T-T-TGGATTT-------TTTT--GCAATTTAGTAtaccaagattagaaatcctggatccacatctgtattttactgaaagcagatatttgaccgtgcttcatgtattttta
gi|17 : taatcaC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGT-GC-ACCA--CT------GTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-AGTTAA---AAT----TCT------------TCAAATGCTCA--CGAACAAAATAAAG--TCTT-TA----ATT-T--TGTGA
gi|18 : gC--ACAGTTGCCTG-AA---CCTCTGACAGGTATT-TTTCCACATGTGAAGTTCACGT-GC-ACCA--CT------GTAAAAATCCATAC----AAAATGTTTCACTTAGACCTGACACA-ATCACAAAGTTAAA-AGTTAA---AAT----TCT------------TCAAATGCTCA--CGAACAAAATAAAG--TCTT-TA----ATT-T--TGTGA
gi|19 : AATAGTAAACA----------CATGAAAA---T-A----T--GGA--TACT-TC--ACAATTAATAATCGGTCGA--TATTATGTCCCTCCA--TAGACTAG-----------------GTAT------GA-TT----TTATGGCC
gi|2 : ATACTGAA----AAAACA---CTGAC-----AT---A-TTTTTAAGGGTCATAAAATCATACCCAGTCCAT-GGA-GG------GAAG-TAATATTATCTGATTATTTACTGT------GGGATGGTATACTA-A-TAATTAGCAAGTGTTTCCGTTATCAAATGGTTAAA--ACA-ATGCC----ACTTCCTCTGGCAGGTATTGTTTCCGCATTAGAA--ACAC----CAACTAGGCG------GAAAAAATCTCTGCAAAAAAAAGATTTCGTTTG----TGA-ACATGTAAACAAGCCATG-ATTTCA---GAT----T-T------------T--------------AAC--------------T-TA----AAT-T--TGTGAT---TGTATC----AG---ATTAAC-A-GT-GTCTATCAGAAACATTTTGCATGGAT-TTT-T-T---TAGCCTAA-TGCGTACAtggtaatcaatatgttaaatactatggctggggaaattactgctgttccgcagtcagtaaaa
gi|2 : GTA-----------CAGCC-A---TTT-----------TG-----T---GAAAT-----ACT----------CTTGCTAA---TTA----TGAGAA--CACTGGCAAACAGTAAATAATCGGTAAG--TATTATTTCCATCCA--TGGAGTTG-----------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATATG-T--TG---T--------TT-------TTTT--GTGGTTCAGTAgccattttgtgaaatactcttgctaattatgagaacactggcaaacagtaaataatcggtaagtattatttccatccatggagttggtatggttttatgacccttagaaatatgttgtttttttgtggttcagta
gi|20 : atactgaaaaaacactgacatatttttaagggtcataaaatcatacccagtccatggagggaagtaatattatctgattatttactgtgggatggtatactaataattagcaagtgtttccgttatcaaatggttaaaacaatgccacttcctctggcaggtattgtttccgcattagaaacaccaactaggcggaaaaaatctctgcaaaaaaaagatttcgtttgtgaacatgtaaacaagccatgatttcagattttaacttaaatttgtgattgtatcagattaacagtgtctatcagaaacattttgcatggatttttttagcctaatgc-----TTATGGAATGG-AAACG----------CATTTTAA---TCA----TTAGCA--TACCGTCCTACAATAAATAATCGGTCGA--TATAATTTCCCTCCA--TGGACTTG-----------------GTAT------GG-TT----TTATGACCCTTAGTATGTGTAGAA-ATATG-T--TG---CAG-TC---TA-------TTTT--GTCGTTAAGTATA
gi|21 : G-AAACA----------CTTGCTAA---CTA----TTAGTA--TACGGTCCTACAGTACATAATCAGTCAA--TATTATTTCCCTCCA--TGGACATG-----------------ATAT------GG-TC----GTATGACCCT---------GAGAA-ATATT-T--TGGT-T-T-TT---TT-------TTTT--GTCTTTCATTATA
gi|22 : G-GAACA----------CTCGCAAA---TTA----TAAGTA--TAATGTCCTACAGTAA--AGT-GGTCAA--TATTATTTTCGTCTG--TTGAATTG-----------------GTAT------AGTTT----TTATGACTCT---------TAAAA-AAATG-T--TT---TGG-GG---GT-------TTTT--GTCGTTCAGTATA
gi|23 : GG-AAACA----------CTTGCTAA---CTA----TTAATA--TACGGTCCTACAGTACATAATCAGTCAA--TATTGTTTCCCTCCA--TAGAC----------------------AT------GA--------TATGACCCT---------GAGAA-ATATT-T--TG--------G---TT-------TTTT--GTCTTTCATTAT
gi|24 : AACA----------CTTGCCAA---CTA----TTAGTA--TACCGCCCGACAGTAAAGAATCGGCCGA--TAGTATTTCCCTCCA--TGGGCTTG-----------------TTAT------GG-TT----TTATAACCAT---------TAGAA-ATATG-------------------T-------TTTT--GTCGTTCAGTA
gi|25 : GTGAAACATTTTGCACAGT--TTT-T-TTTTCAGCCCAAATCGGTTCATGTGCACTTCATGCAGAAACAAT--ATCT--GTCAGAGGTA-----------CAAGC-A-----T---GTGTAA-CTGGTAAATTAAGGAATG
gi|26 : ATACTGAACAACAAAAAAAGCCC-AC-----ATCATA-TTCCTATAGGTCATAAGACCATACTATG---ATTTGATGA------GACATTCATACT--CC--TTATTTATGGT------Gc
gi|26 : cactgtcacaaatTA-----------------GTAT------GG-TC----TTATGACCTA---------TAGGA-ATATG-A--TG---T-G-GGCT-TT-------TTTT--GTTGTTCAGTAT
gi|27 : cactgtcacaaatcaccataaataaggagtatgaatgtctcatcaaatcaATGG-AAACA----------TTTGCTTA---TTA----TAAGTA--TACCATCCTACAGTAGATAATCAGTAGA--TATTATATCCCTCC------------------------------AT------GA-TT----TTATGATCCT---------TAGAA-AAATG-T--TG---T---TG---T
gi|28 : ACCCCAGACA-GTAACAAGGTTAAA-A----A---GCT----TGT------------TTAAATATTCA--CAAAAGAAATGATG--T-CTGTA----ACT-T--TGTGA
gi|29 : ttatatacacaagttaataAAAGA---CA-TT-----TTT-TT-TTTCTAAGGACCATAAAACCATACCATGTCCA-TGGA-GG------GAAG-TAATATTGACCCATT
gi|3 : ctgtactgTAGA-ATTTAA---AATGGCTTGT------------TTAAATGTTCA--CGAATGAAATCAAGACT-TT-TA----ACT-AAATGTGAT---TGTGTTTG--GGGTTATTAACAA-CT-GTTTGTGCGAA-TATTT-GCGTATA--TTTAT-T---TAGCCTAA-TCAGTGCTTATGCCCTTTATGGGGAAACATT--ACCT--GTCAGATGTA-----------CAAGC-A---TTT---GCGTAA-CAA-----TCAAGGAATAG-AAATA----------CTTGCTAA---TTA----TTAGTA--TACCATCCTACAATAAATTATCAGCCGA--TATTATCTCCCTCCA--TGTACTTG-----------------GTAT------GG--T----TAATAACAAT---------TGGAA-ATATG-T--TG---G-G-AG---TC-------TTTTTAGTTGTTCAGTATA
gi|3 : A-----------CAAGCCA---TTT------TAA-ATT-----CTATGAAACGG-AAACA----------CATACTAA---TTA----TTAGTA--TACTGTCCTACAGTTAATAATCAGTTGA--TATTATTTCCTTCCA--TGGACTTG-----------------GCAT------GG-TT----TTAAGACCCT---------AAGAA-ATATG-TACGG---T-G-AG---TTGATTTTCTTTT--GTCtgaaacggaaacacatactaattattagtatactgtcctacagttaataatcagttgatattatttccttccatggacttggcatggttttaagaccctaagaaatatgtacggtgagttgattttcttttgtcta
gi|30 : tatactgaacaactaaaaagactcccaacatatttccaattgttattaaccataccaagtacatggagggagataatatcggctgataatttattgtaggatggtatactaataattagcaagtatttctattccttgattgttacgcaaatgcttgtacatctgacaggtaatgtttccccataaagggcataagcactgattaggctaaataaatatacgcaaatattcgcacaaacagttgttaataaccccaaacacaatcacatttagttaaaagtcttgatttcattcgtgaacatttaaACAGTAAATA-TCTG-CGAGTTAGTATTTCCCTTCG--TAGA-----------------------------------T----TTATGACCCT---------TAGAA-ATAAA-T--TG---G-GCTC---TT-------TTTT--ta
gi|31 : aaATTTCCCTCCA--TGGACTTG-----------------GTAT------GG-TA----TGATGACTCT---------CAGAA-ATATG-T--TG---T-T-TG---TT--------------TCATTCAGTAT
gi|33 : aTATACTGAAAGACAAAA---------------GTT-TT-TTTATAAGGGTCATTAAACCATACCAAGT
gi|34 : ata-TT-CA----ACT-T--TGTGAT---TGT--C----AGGTTATTAACAATGT-ATCAATa
gi|35 : ttta--TATTATATCCCTCTA--TGGACTTG-----------------GTAT------CA-TT----GTATGACCTT---------TAGAA-gat
gi|4 : TCACAAAGTTAAAGACTTGATTTCAT----T-T------------GTGAACATTTAAACAAGCCATTTCAAT--T-TT-AA----ACT-T--TGTGAC---TGT--C----AGGTTATTAACAATGT-GCCGATGTAAAACATTTTGCA-GAA--TAT-T-T---TTGCCAAA-TCGGTGCACATGCACTTAATGAGGAAGCAAT--ACCT--G-----------------------GC-A---TTT---GTGTAA-CTG-----TTAAGGAACGG-AAACA----------CTTGTTAAGGATTAGTAATTATTA--TACCGTCCAACAGTAAATAACGGGTCAA--TATTATATCCCTCCA--TGGAC-TG-----------------GT-T------GT-TT----TTTTTACCCT---------TAGAA-ATAAG-T--TG---T-G-T----TT-------TTT----TCATTCAGTA
gi|4 : TT---GTTTAA-ATG-----TTCACAAATGA-AATCAAGTCTTTAACTTTGTGAA---GTA----TTTTTA--TACTGTTCTACAATAAATAATCGGTCAA--TATTATTTCCGTCCA--CAGATTTG-----------------GTAT------GG-TT----TTATTACCCT---------TAGAA-ATAGG-T--TG---T-G-TT---AT-------TTTT--GTTGTTCAGTATAagtatttttatactgttctacaataaataatcggtcaatattatttccgtccacagatttggtatggttttattacccttagaaataggttgtgttatttttgttgttcagtata
gi|5 : tactgaatgaaaaaaacacaacttatttctaagggtaaaaaaaacaaccagtccatggagggatataatattgacccgttatttactgttggacggtataataattactaatccttaacaagtgtttccgttccttaacagttacacaaatgccaggtattgcttcctcattaagtgcatgtgcaccgatttggcaaaaatattctgcaaaatgttttacatcggcacattgttaataacctgacagtcacaaagtttaaaattgaaatggcCCTACAGTAAATAGTTGGTCGA--TATCATTTCCCTCCA--TGGATTTG-----------------GTAT------GG-TT----TTATAACCCT---------TAGAA-ATATG-T--T----T-G-AT---TT-------TTTT--GTTGTTCAGT
gi|5 : aaaaGA--TTT-AAT---CAGCCTAA-TCGGTGCATGTGCACTTCATGCAGAG-CAAT--ACCT--GTTAGAAGTA-----------CAGGC-A---TTT---GTGTAA-CTG-----TTAAGGAATGG-AAACA----------CTTGCTAA---TTA----TTAGTA--TACTGTTCTACAATAAATAATCGGTTGA--TATTTTTTCCC-CTATTTGGATTTG-----------------GTAT------GA-TT----TTATGACCTT---------TAGAA-ATATG-T--TGCTTT-G-T----TT-------TTTT--GTTATTCAGTATAcatgatttaatcagcctaatcggtgcatgtgcacttcatgcagagcaatacctgttagaagtacaggcatttgtgtaactgttaaggaatggaaacacttgctaattattagtatactgttctacaataaataatcggttgatattttttcccctatttggatttggtatgattttatgacctttagaaatatgttgctttgtttttttgttattcagtatac
gi|6 : aaaaactgaacaacaaaaaaatcaaacatatttctaagggttataaaaccataccaaatccatggagggaaatgatatcgaccaactatttactgtaggcatTATACTGAACGCCAAAAAAACCCG-A------GTT-T--TTTCTAAGGGTCATACAACCATACCAGGTCCACTG-A-GG------GAAC-TAAAAATGACTGATTATTTATTCT------GTGACGGTATAATATACTAATTAGCAAGTGTTTATATTTGTTAACGGTT-ACTCGCAGAT--CTG-CA---CCTCTGACAGGTATTGTTTCCGCATG--AAGTGCACGTAG-----G--CT------GAACAAATCCGTAC----AAAATGTAT------AACCTGACACA-ATCACGAAGTTATA-AGTTAA---AAT----T-TGAAACGACTCGTTTAAATGTTCA--GGAACGAATTAAAG--T-CT-CAGTCCACT-C--TGTGc
gi|7 : TCAAA--T-TA-CA----ACT-----GTGAT---TGTATC----AGGTTATTAACA---C-ACTTATGCGAAACATTTTGCA--GATTTTT-T-T---CAGCCTAA-TCGGTGCATATGCACTTCATGCCGAAAC-ATCAATCTGAGGCACAGGTATTTTTGAGGCACAGGT-A---TTT---TTGTAA-CTG-----TTAAGGAATTA-AAACA----------CTTGCCTA---TTA----TTGGTA----------TACAGTAAATAAATGGTCAA--TATTATTTCTCTCCA--CAAAC--A-----------------GTCT------TG--A----TTATGAACTT---------TAGAA-AT
gi|8 : agacaaaagtcttggttccatccgtgtgaacatctatgcaagccattA-----------CAGAA-G---TTTTCAGCATAATCTG-----T-AAAAAATAG-AAACA----------ATTAATAG---TT--------GTA--TACTGTCCTACAGTAAATAATCA----A--TATTATTTCCCTCCA--TGGACTTGGTAT-------------GTAT------GG-TT----TTATGACCCT---------TAGAA-ATGC--T--TT---T-G-GG---CT-------TTTT--GTCACTCGGTAT
gi|8 : TATACGGAACGACACAACA---CC-ACCCCCAATG-TG-TTTCTAAGGGTCA--AAACTATACCAAGTCCATTG-A-GG------GAAA-TAATATTGA----TTATTTACTGT------AGGACAGTATAC------AACTAGTAATTGTTTTCATTTCTTACTGATT-AC--ACAGAgtaatcagtaagaaatgaaaacaattactagttgtatactgtcctacagtaaataatcaatattatttccctcaatggacttggtatagttttgacccttagaaacacattgggggtggtgttgtgtcgttccgtata
gi|9 : ataccgagtgacaaaaagcccaaaagcatttctaagggtcataaaaccatacataccaagtccatggagggaaataatattgattatttactgtaggacagtatacaactattaattgtttctattttttacagattatgctgaaaactTAA-TCAGTGCATGTGCACTTCATGCTGAAACAAT--ACCT--GTTAGAGAT------------------G---TTT---GTATAA-CAG-----TTAAGGAATGG-AAACA----------CTT--T-----TTA----TTAGTA--AACAGTCCTTCAGTAAATAATCCATCAA--TATTATTTCCCTCCG--T-GACTTGCTACTTACCATCTTACAGTATATAATCAG-TTGATATAATGACCCT---------TAGAATACATG-TA-TG---A-G-TG---TT-------ATTT--GTTGTTCAGTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTTGGTTATATATTGCTATATTACGATATTACAGTAACCTAAGTCATTTTCTGACCTGCTTGAATATTATGAAGCACTTCATACTCTGTTTTTAGCAGGAGACCAAGAATTACATTGGTCTGCACATCTTCATATAGATTAGCCAATCAAACATCAGCTTACAAAAAAGTGATCATCTGGACCTGTCATAACTGTAAACAAGTTATGATGTAACAATTC
Unaligned ( gi|32 ): TAGCAATACTTCTGACTATCCTGAAACCAGCATATTAACGTATATGTTCTTGCAATTT