lowQualScore : 3 2 2222 111 1 111 8 11 9 1 44 1
lowQualScore : . . .... ... . ... . .. . . .. .
lowQualScore : 4 4 4444 999 1 999 9 22 1 1 11 4
consensus : CCC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
Reference ( gi|22 ) : CTC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|18 : CCC-CACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTTG-AGAGCACAGCGAGA
gi|20 : tCCC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TGTTTTTATCAATGAAAATTGTCGTA-T-TTTTT--AGAGCACAGCGAGAT
gi|8 : CTCTCACCAGATGACGTAAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGTACAGCGAGAT
gi|16 : ccCCC-CACCAGATAACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-ATTTTTTATCAATGAATATTGCCGTG-T-TTTTT--AGGACACAGCGAGAT
gi|12 : cCCC-CACCAGATGACGCCAC----TATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTATATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|11 : cCCC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|4 : catCCC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|7 : cccatCCC-CACCAGATGACGTCAC----TATGCA---T-A---GCAGTAAATGCGTAAAAC-A-ATTTTTTTTCCATGAAAATTGCCACG-T-TTTTT--AGAGCACAGCGGGA
gi|9 : cccccCTCTCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTTTGTCAATGAAAATTGCCACG-T-TTTTT--AGTGCACAGCGAGA
gi|5 : tcCCC-CACCAGATGACTTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATGAATGAAAATTGCCGTG-T-ATTTT--AGTGCACAGCGAGAT
gi|15 : cctcCCC-CACCAGATGACGTTAC----TATGTA---T-A---GTAGTAAATGCGTAAAACAA-TGTTTTTATAAATGAAAATTGCCGCA-T-CTTTT--AGTGCACAGCGAGAT
gi|33 : cCCC-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--
gi|23 : aCCC-CACCAGATGACCTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTT----ATGAAAATTGCCGCG-T-TTTTT--AGTGTACAGCGAGA
gi|3 : cCCC-CACCAGATGACATCAC----TATGCAAAGT-ACCGGTAGTAAATGCCTAAGAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCAAAGTGAGA
gi|35 : CTC-CACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TT
gi|31 : CCC-CACCAGATGACGTCAC----TATGTA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--
gi|34 : cccCCC-CACCAGATGACGTCAC----TATGTA---T-T---GTTGTAAATGCGTAAAAA-A-AATTTTTATGAATGAAAATTGCCGCA-T-TTTTt
gi|19 : C-CACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|37 : cgC-TACCAGTTGACGTCAC----TATGCA---TAA---ATGGCAAA
gi|21 : ccccccccccccccccccaccca-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|6 : cg-CACCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|1 : ccccct-CACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGAGTAAAAC-A-TTTTTTTATCAATGAAAACTGCCGCA-T-TTTTTTAAGAGCACAGCGAGAT
gi|14 : cccccat-CGCCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCTGCATT-TTTTT--AGAGCACAGCGAGAT
gi|2 : cccct-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCATAGAAC-ATTTTTTTTATCAATGAAAATTGACGCG-T-TTTTTA-AGAGCACAGAGAGAT
gi|13 : ccccact-CACTAGATGATGTCACTCACTATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCAC--T-TTTTT--AAAGCACAGCGAGA
gi|17 : caca-CACCAGATGAAGTCAC----TATGCA---T-A---GAAGTAAATGCGTAAAAC-A--TTTTTAATCAATGAAAATTGCTGCA-T-TTTTT--AGAGCATAGCGAGAT
gi|30 : ccact-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATTAATGAAAATTGCCGCG-T-TTTTT--
gi|25 : ccccct-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-TATTTTT--A
gi|28 : ccccct-CAACAGATGACGTCAC----TATGCA---T-A---GTAGTGAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-CTTTT--
gi|24 : cctcct-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGTGGAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCG-T-TTTTT--ta
gi|27 : ccctcact-CACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAAGGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--t
gi|32 : cccccat-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCCTAAAAC-A--TTTTTTATCAATGAAAATTGCGGCG-T-TTTTT--t
gi|29 : cccct-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGAAAATC-A-TTTTTTTATCAATGAAAATTGCCAAA-T-TTTTT--c
gi|36 : ccccct-CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATAAATGAAAAATGCt
gi|10 : cccccttcaACCAGATGACGTCAC----TATGCA---T-A---GTAGCAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGTGCACAGCGAGAT
gi|26 : ccccaACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGACGCGTT-TTTTT--AGTTCACAGCGAGAT
gi|38 : -A-TTTTTTTATCAATGAAAAATGCCGCG-----TTT--AGTGCACAGCGAGAT
Alignments
lowQualScore : 2222 111 1 111 8 1 8 1 44 1
lowQualScore : .... ... . ... . . . . .. .
lowQualScore : 3333 999 1 999 6 1 9 1 00 0
consensus : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
Reference ( family-3950 ) : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|1 : CACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGAGTAAAAC-A-TTTTTTTATCAATGAAAACTGCCGCA-T-TTTTTTAAGAGCACAGCGAGAT
gi|10 : cccccatCCCAACCAGATGACGTCAC----TATGCA---T-A---GTAGCAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGTGCACAGCGAGAT
gi|11 : cCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|12 : catCCCCACCAGATGACGCCAC----TATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTATATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|13 : cCACTAGATGATGTCACTCACTATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCAC--T-TTTTT--AAAGCACAGCGAGA
gi|14 : cacaCCTCGCCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCTGCATT-TTTTT--AGAGCACAGCGAGAT
gi|15 : ccCCCCACCAGATGACGTTAC----TATGTA---T-A---GTAGTAAATGCGTAAAACAA-TGTTTTTATAAATGAAAATTGCCGCA-T-CTTTT--AGTGCACAGCGAGAT
gi|16 : cCCCCACCAGATAACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-ATTTTTTATCAATGAATATTGCCGTG-T-TTTTT--AGGACACAGCGAGAT
gi|17 : cCTCACCAGATGAAGTCAC----TATGCA---T-A---GAAGTAAATGCGTAAAAC-A--TTTTTAATCAATGAAAATTGCTGCA-T-TTTTT--AGAGCATAGCGAGAT
gi|18 : ccaCCCCACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTTG-AGAGCACAGCGAGA
gi|19 : tCCACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|2 : cgCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCATAGAAC-ATTTTTTTTATCAATGAAAATTGACGCG-T-TTTTTA-AGAGCACAGAGAGAT
gi|20 : ccccaCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TGTTTTTATCAATGAAAATTGTCGTA-T-TTTTT--AGAGCACAGCGAGAT
gi|21 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|22 : cgCTCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|23 : CCCCACCAGATGACCTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTT----ATGAAAATTGCCGCG-T-TTTTT--AGTGTACAGCGAGA
gi|24 : cCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGTGGAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCG-T-TTTTT--
gi|25 : ccctcaCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-TATTTTT--t
gi|26 : cccACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGACGCGTT-TTTTT--AGTTCACAGCGAGAT
gi|27 : CACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAAGGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--
gi|28 : cccccatCCTCAACAGATGACGTCAC----TATGCA---T-A---GTAGTGAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-CTTTT--t
gi|29 : cctCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGAAAATC-A-TTTTTTTATCAATGAAAATTGCCAAA-T-TTTTT--ta
gi|3 : cccCCCCACCAGATGACATCAC----TATGCAAAGT-ACCGGTAGTAAATGCCTAAGAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCAAAGTGAGAt
gi|30 : CCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATTAATGAAAATTGCCGCG-T-TTTTT--
gi|31 : cccCCCCACCAGATGACGTCAC----TATGTA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--
gi|32 : cccCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCCTAAAAC-A--TTTTTTATCAATGAAAATTGCGGCG-T-TTTTT--t
gi|33 : ccCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--c
gi|34 : aCCCCACCAGATGACGTCAC----TATGTA---T-T---GTTGTAAATGCGTAAAAA-A-AATTTTTATGAATGAAAATTGCCGCA-T-TTTT
gi|35 : CTCCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TT
gi|36 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATAAATGAAAAATGC
gi|37 : cccccttcaCTACCAGTTGACGTCAC----TATGCA---TAA---ATGGCAAA
gi|38 : ccccccccccccccccccaccca-A-TTTTTTTATCAATGAAAAATGCCGCG-----TTT--AGTGCACAGCGAGAT
gi|4 : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|5 : cccatCCCCACCAGATGACTTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATGAATGAAAATTGCCGTG-T-ATTTT--AGTGCACAGCGAGAT
gi|6 : cctcCCTCACCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|7 : cccCCCCACCAGATGACGTCAC----TATGCA---T-A---GCAGTAAATGCGTAAAAC-A-ATTTTTTTTCCATGAAAATTGCCACG-T-TTTTT--AGAGCACAGCGGGA
gi|8 : cccccCTCACCAGATGACGTAAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGTACAGCGAGAT
gi|9 : ccctCTCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTTTGTCAATGAAAATTGCCACG-T-TTTTT--AGTGCACAGCGAGA
Alignments
lowQualScore : 2222 111 1 111 8 1 8 1 44 1
lowQualScore : .... ... . ... . . . . .. .
lowQualScore : 3333 999 1 999 6 1 9 1 00 0
consensus : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
Reference ( family-3950 ) : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|1 : CACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGAGTAAAAC-A-TTTTTTTATCAATGAAAACTGCCGCA-T-TTTTTTAAGAGCACAGCGAGAT
gi|10 : cccccatCCCAACCAGATGACGTCAC----TATGCA---T-A---GTAGCAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGTGCACAGCGAGAT
gi|11 : cCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|12 : catCCCCACCAGATGACGCCAC----TATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTATATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|13 : cCACTAGATGATGTCACTCACTATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCAC--T-TTTTT--AAAGCACAGCGAGA
gi|14 : cacaCCTCGCCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCTGCATT-TTTTT--AGAGCACAGCGAGAT
gi|15 : ccCCCCACCAGATGACGTTAC----TATGTA---T-A---GTAGTAAATGCGTAAAACAA-TGTTTTTATAAATGAAAATTGCCGCA-T-CTTTT--AGTGCACAGCGAGAT
gi|16 : cCCCCACCAGATAACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-ATTTTTTATCAATGAATATTGCCGTG-T-TTTTT--AGGACACAGCGAGAT
gi|17 : cCTCACCAGATGAAGTCAC----TATGCA---T-A---GAAGTAAATGCGTAAAAC-A--TTTTTAATCAATGAAAATTGCTGCA-T-TTTTT--AGAGCATAGCGAGAT
gi|18 : ccaCCCCACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTTG-AGAGCACAGCGAGA
gi|19 : tCCACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|2 : cgCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCATAGAAC-ATTTTTTTTATCAATGAAAATTGACGCG-T-TTTTTA-AGAGCACAGAGAGAT
gi|20 : ccccaCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TGTTTTTATCAATGAAAATTGTCGTA-T-TTTTT--AGAGCACAGCGAGAT
gi|21 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|22 : cgCTCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|23 : CCCCACCAGATGACCTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTT----ATGAAAATTGCCGCG-T-TTTTT--AGTGTACAGCGAGA
gi|24 : cCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGTGGAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCG-T-TTTTT--
gi|25 : ccctcaCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-TATTTTT--t
gi|26 : cccACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGACGCGTT-TTTTT--AGTTCACAGCGAGAT
gi|27 : CACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAAGGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--
gi|28 : cccccatCCTCAACAGATGACGTCAC----TATGCA---T-A---GTAGTGAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-CTTTT--t
gi|29 : cctCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGAAAATC-A-TTTTTTTATCAATGAAAATTGCCAAA-T-TTTTT--ta
gi|3 : cccCCCCACCAGATGACATCAC----TATGCAAAGT-ACCGGTAGTAAATGCCTAAGAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCAAAGTGAGAt
gi|30 : CCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATTAATGAAAATTGCCGCG-T-TTTTT--
gi|31 : cccCCCCACCAGATGACGTCAC----TATGTA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--
gi|32 : cccCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCCTAAAAC-A--TTTTTTATCAATGAAAATTGCGGCG-T-TTTTT--t
gi|33 : ccCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--c
gi|34 : aCCCCACCAGATGACGTCAC----TATGTA---T-T---GTTGTAAATGCGTAAAAA-A-AATTTTTATGAATGAAAATTGCCGCA-T-TTTT
gi|35 : CTCCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TT
gi|36 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATAAATGAAAAATGC
gi|37 : cccccttcaCTACCAGTTGACGTCAC----TATGCA---TAA---ATGGCAAA
gi|38 : ccccccccccccccccccaccca-A-TTTTTTTATCAATGAAAAATGCCGCG-----TTT--AGTGCACAGCGAGAT
gi|4 : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|5 : cccatCCCCACCAGATGACTTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATGAATGAAAATTGCCGTG-T-ATTTT--AGTGCACAGCGAGAT
gi|6 : cctcCCTCACCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|7 : cccCCCCACCAGATGACGTCAC----TATGCA---T-A---GCAGTAAATGCGTAAAAC-A-ATTTTTTTTCCATGAAAATTGCCACG-T-TTTTT--AGAGCACAGCGGGA
gi|8 : cccccCTCACCAGATGACGTAAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGTACAGCGAGAT
gi|9 : ccctCTCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTTTGTCAATGAAAATTGCCACG-T-TTTTT--AGTGCACAGCGAGA
blockSeqs : TCAC AAG A CCG A T T A G
blockSeqs : . . . . A . T . A
blockSeqs : . . . . A . T . .
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blockSeqCons : **
originalCons : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
finalCons : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
Alignments
lowQualScore : 2222 111 1 111 8 1 8 1 44 1
lowQualScore : .... ... . ... . . . . .. .
lowQualScore : 3333 999 1 999 6 1 9 1 00 0
consensus : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
Reference ( family-3950 ) : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|1 : CACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGAGTAAAAC-A-TTTTTTTATCAATGAAAACTGCCGCA-T-TTTTTTAAGAGCACAGCGAGAT
gi|10 : cccccatCCCAACCAGATGACGTCAC----TATGCA---T-A---GTAGCAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGTGCACAGCGAGAT
gi|11 : cCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|12 : catCCCCACCAGATGACGCCAC----TATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTATATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|13 : cCACTAGATGATGTCACTCACTATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCAC--T-TTTTT--AAAGCACAGCGAGA
gi|14 : cacaCCTCGCCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCTGCATT-TTTTT--AGAGCACAGCGAGAT
gi|15 : ccCCCCACCAGATGACGTTAC----TATGTA---T-A---GTAGTAAATGCGTAAAACAA-TGTTTTTATAAATGAAAATTGCCGCA-T-CTTTT--AGTGCACAGCGAGAT
gi|16 : cCCCCACCAGATAACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-ATTTTTTATCAATGAATATTGCCGTG-T-TTTTT--AGGACACAGCGAGAT
gi|17 : cCTCACCAGATGAAGTCAC----TATGCA---T-A---GAAGTAAATGCGTAAAAC-A--TTTTTAATCAATGAAAATTGCTGCA-T-TTTTT--AGAGCATAGCGAGAT
gi|18 : ccaCCCCACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTTG-AGAGCACAGCGAGA
gi|19 : tCCACCAGATGACATCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGTGTT-TTTTT--AGAGCACAGCGAGAT
gi|2 : cgCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCATAGAAC-ATTTTTTTTATCAATGAAAATTGACGCG-T-TTTTTA-AGAGCACAGAGAGAT
gi|20 : ccccaCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TGTTTTTATCAATGAAAATTGTCGTA-T-TTTTT--AGAGCACAGCGAGAT
gi|21 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|22 : cgCTCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCACAGCGAGAT
gi|23 : CCCCACCAGATGACCTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTT----ATGAAAATTGCCGCG-T-TTTTT--AGTGTACAGCGAGA
gi|24 : cCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGTGGAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCG-T-TTTTT--
gi|25 : ccctcaCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-TATTTTT--t
gi|26 : cccACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATCAATGAAAATTGACGCGTT-TTTTT--AGTTCACAGCGAGAT
gi|27 : CACCAGATGAAGTCAC----TATGCA---T-A---GTAGTAAAGGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--
gi|28 : cccccatCCTCAACAGATGACGTCAC----TATGCA---T-A---GTAGTGAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-CTTTT--t
gi|29 : cctCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGAAAATC-A-TTTTTTTATCAATGAAAATTGCCAAA-T-TTTTT--ta
gi|3 : cccCCCCACCAGATGACATCAC----TATGCAAAGT-ACCGGTAGTAAATGCCTAAGAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--AGAGCAAAGTGAGAt
gi|30 : CCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATTAATGAAAATTGCCGCG-T-TTTTT--
gi|31 : cccCCCCACCAGATGACGTCAC----TATGTA---T-A---GTAGTAAATGCGTAAAAC-A--TTTTTTATCAATGAAAATTGCCGCG-T-TTTTT--
gi|32 : cccCCTCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCCTAAAAC-A--TTTTTTATCAATGAAAATTGCGGCG-T-TTTTT--t
gi|33 : ccCCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCACG-T-TTTTT--c
gi|34 : aCCCCACCAGATGACGTCAC----TATGTA---T-T---GTTGTAAATGCGTAAAAA-A-AATTTTTATGAATGAAAATTGCCGCA-T-TTTT
gi|35 : CTCCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCG-T-TT
gi|36 : CACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATAAATGAAAAATGC
gi|37 : cccccttcaCTACCAGTTGACGTCAC----TATGCA---TAA---ATGGCAAA
gi|38 : ccccccccccccccccccaccca-A-TTTTTTTATCAATGAAAAATGCCGCG-----TTT--AGTGCACAGCGAGAT
gi|4 : CCCCACCAGATGACGTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAAA-A-ATTTTTTATGAATGAAAATTGCCGCG-T-TGTTT--AGTGCACAGCGAGAT
gi|5 : cccatCCCCACCAGATGACTTCAC----TATGCA---T-A---GTAGTAAATGCGTAAAACAA-TTTTTTTATGAATGAAAATTGCCGTG-T-ATTTT--AGTGCACAGCGAGAT
gi|6 : cctcCCTCACCAGATGACGTCAC----TATACA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCTGCGTT-TTTTT--AGAGCACAGCGAGAT
gi|7 : cccCCCCACCAGATGACGTCAC----TATGCA---T-A---GCAGTAAATGCGTAAAAC-A-ATTTTTTTTCCATGAAAATTGCCACG-T-TTTTT--AGAGCACAGCGGGA
gi|8 : cccccCTCACCAGATGACGTAAC----TATGCA---T-A---GTAGTAAATGCGTAAAAC-A-TTTTTTTATCAATGAAAATTGCCGCGTT-TTTTT--AGAGTACAGCGAGAT
gi|9 : ccctCTCACCAGATGACGTCAC----AATGCA---T-A---GTAGTAAATGTGTAAAACAA-TTTTTTTGTCAATGAAAATTGCCACG-T-TTTTT--AGTGCACAGCGAGA