lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 111 2222 222 1 1 55555555555555 222222 222222222222 1 555555555555555555 1 11 22222222 11111111 4444444444444444444 1111
lowQualScore : 5 6 6 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 555 9999 888 6 111 6 0 2 8 5 2 2 11111111111111 8 888888 8 6 333333333333 0 0 888888888888888888 8 3 22 11111111 4 3 4 55555555 1 3 9999999999999999999 2 555555555 1 333333 2 8 1 2222 1
lowQualScore : . . . ................................................................................................................ .. ... .... ... . ... . . . . . . . .............. . ...... . . ............ . . .................. . . .. ........ . . . ........ . . ................... . ......... . ...... . . . .... .
lowQualScore : 0 0 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33 333 7777 000 7 333 0 0 5 2 5 5 5 22222222222222 0 222222 0 7 888888888888 7 1 666666666666666666 9 0 66 00000000 4 1 2 44444444 8 6 7777777777777777777 2 222222222 3 444444 9 1 5 6666 5
consensus : ACAACAATATACACAC-TAGTATTA--CCCCGACCCCCAT--ACCCAATATCAANACCCAAACACAAGGGANCCTAGATTAACNCGCACGGCGGCATGTCCAACA-CCACTA-CAAC---ATACC--GTTTCC-TTACCTCGGCAATATCAGGATAAACCAACT-AAAGGTTAAAT-TAACCGACGGGTNTATCCTTATTTTNCACAGNTTTA-GGAAC-----TT-TA-GAAAC------AGT---TCTGCGGCGGAACATCAAAA-TA---------------TAACGAAATCTC-NAAA--TTANA-CC-TTTT-ATAGTCCACACTCTAT--A--G--TGCCAA-CC-CGGGGG-TA--ACCTCC--C--G-GGACTATTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACACAC
Reference ( gi|3 ) : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT----GCA----GCGGCAAGTATCACAACCAGTAGTATC---ATACC--ATTTCT-TTACCTCGGCAACAT-AAAACAGACCCACT-AGAGATTAAAT-TAACCAAAGGATCTATCCAAATTT---ATAGTTTTA-GAAAC-----GT-TA-GAAAC------ATT---TCTGCGGCGGAACATCAAAA-C----------------TAACTAAATCTC-CAAA--TTATA-CC-TTTT-ACAGTCCACACTCTAT--T--G--TGCCAA-CC-TGGGGG-CA--AGCTCC--C--A-GGACTACTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACACAC
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC-----ATCCAA-ATCAAAACCCAAACAT-AGGGAACCTAGATTAACACG----GCGACATGTCCAACA-CCACTATTAAC---CTACC--ATTTCC-TTACCTCGGC-ATATCAGGATAAACCAACT-AAAGGTTAAAT-GAACCGACAGGTATATCCTTATTTTC-ACAGTTTTG-GGAAC-----TT-TA-GAAAC------AGT---TCT
gi|1 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaCCCCAT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGAT----CCACACGGCGGCATGTCCAACA-CCACTC-CAAC---ATAC---ATCACC-TTAACACGGCA-TATCGGGATAAACCAACT-AAAGGTTAAAT-TAACCGACAGGTATATCCCTATTTTTCACAGATTTA-GGAAC-----TT-TA-GAAAC------AGT---TCTGCGGCGGAACAGCAAAAACA---------------TAA--AAATTCC-AAAA--TTAAT-CT-TTTT-ACAGTCCACACTCTAT--T--G--TGCCAG-CC-CGGGGG-CT--TGCCCC--C--G-GGGTAACCTGGCGGA---------GGGA-CT----A-T-AATCCT-TAG----TA-CAACACACA
gi|4 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaacaacaacaaacactctaatattatatcgaTAGCATCGTTATACTTTGTTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTAT-----TTT---GC--TTTCACGGCAC-----AT-TAAGAAACTGTATTATTAGTTATGTGGTGGAACATAAAAA-TATATATATGCAAAAGATGACGTAATCTC-AAAAATTTA-A-CC-GTTT-ATATCCCATACTTTGT--A--G--TGCAAA-CC-TGGG--------GTTCC--CTTG-GGACTATTTTGCGGA---------TGGAGCT------T-AATCCT-TAG----AA-TTACATATAC
gi|8 : TAAATGTAA---ATGGATCCATCCTACTTTTATATAGATTTA-TAAAC-----TT-AA-GATAT------AGT---TCTGCTGCGTAACATCCAAA-C----------------CAACAAAATCCC-GATA--TTATA-CC-TTTT-ATATTCCac
gi|7 : cgtgTTTA-GAAACTACGTGTATA-AAATT------AGT---TTTGTGGCAGAACAT-GAAA-T----------------TAATGAAACCTC-TAAA--ACAGA-CC-TTTTTATTGCCCACACTTTATA-TAAG--TGCCAA-CA-CGGGGG-GGTTACCTCC--T-----GACTGTTTGGCAGA---------AGGA-CT----C-A-AACCCT-TAG----AATTTAAACACcaaggactatttggcggagggactaaaaaccttagaatcacacaaa
gi|12 : -GAAGT------AGT---TATGTGGCGGAACACCAACA-T----------------TACCGAAAT-TC-CAAAG-TTAAC-CC-TTTT-ATAG
gi|9 : tttatttaaaccCTGTGACAGTACAT-AAAA-T----------------TAACGAAATATC--AAA--TTTTAACCGTTTT-ATAGTCCACATTCTAT--G--A--TGCCAT-CC-CGTGG---A--TTCTCC--C--G-GAACCATCTGGAGGA---------GGAA-CT----C-G-AATTGT-TAG----AA-TCATACACAcgtcaactatttggcagagggacaccttagaatcaaac
gi|10 : agccATTAAAA-TAG--------------TAAC--AATCACACACA--CTCT--CA-TTTC-ATAGTCCACTTTCTAT--A--G--AGCCAA-CC-CGGGGA-TA--ACCTC------A-GGACTATCTGGCAGA---------GGGA-CT----A-A-AA-----TAGTGACAT-TCACACACACg
gi|13 : gggTT-CAAA--TGAGG-AC-TTT----AGTTCACACTTTAC--T--ACCTGTCAA-TA-TTGG-----------CC--T--G-GGACTATTTGACAAA---------GGGA-TT----A-A-TATCCT-CAG----AA-TCACACACA
gi|11 : t-TTTC-ATAGTCCACCTTCTAT--A--G--AGCCAA-CC-TGGGGG-TA--ACCT----C--A-GGACTATCTGGCAGA---------GGGA-CT----A-A-AAactttagtgtgac
gi|22 : tctggcagagggactaaaatagtgacattcacacacactctcaT-ACAGGCCAAACTCTAT--T--G--TGCCAA-CC-CGGGGG-CA--A--TCC---------------TGGCGGA----------GGA-CT----A-A-AAACCT-TAG----AA-TTACATACA
gi|17 : -ATAGTCCACCTTCTAT--A--G--AGCCAA-CC-TGGGG--TA--ACCTC------A-GGACTATCTGGCAGA---------GGGA-TT----A-A-AA-----TAGTAACAA-TCACACAC
gi|16 : c-ATAGTTCATACTCTAT--A--G--TGTCGA-CCCTGGGGG-T----TTTAC--T--T-AGACATTTTGGCAAA---------GGGA-CT----ATATAAACCT-TAA----AA-TCACA
gi|14 : c-ATAGTCTGCACTCTATAGT--GCCTGCCAA-TC-TGAG-------AATTCC--CTCA-GGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-ATAC-T-GAG----AA-TAACACACAC
gi|20 : AGTCCACCTTCTAT--A--G--AGCCAA-CC-TAGGGG-TA--ACCT----C--A-GGACTGTCTGGCAGA---------GAGA-TT----A-A-AA-----TAGTAACAA-TCACACA
gi|19 : tAGTCCATACTCTAT--A--T--TTCTAA-CC-TGATGG-TC--ACCTCT--T-----GACTATTTGGCAGA---------CGGA-CT----A-A-AAGCCTAAAA----AA-CCACAC
gi|15 : tAGTTCACATTCTGT--T--G--TGTTAAACC-TGGGG--CA--AGTCGCGGC--G-GGATAACGTAGCGGA---------GTTA-TT----A-GTAAACCT-TAG----AA-CAACACAC
gi|29 : taAGTCAACATCTTAT--A--G--TGCCAA-CC-CGGGG---A--ACCT----C--G-GGATGACTTGGCGGA---------AGGA-
gi|26 : AGTCCACACACTGT--A--G--TACCAG-CC-CAGGGG-TT--ACCTT--------GGACTACTTAGTGGA---------AGGA-CT----
gi|27 : AGTTCACACCCAAT--T--C--TGCCTT-CC-CGGGG---A--TTCTTC--C--G-GGACTATTTCGCGGA---------GGGA-
gi|18 : tAGTCCACAATTTAT--A--T--TAGCAA-CT-CGAGGG-T----TTTCC--CT-C-GGATGATTTGGCGGA---------GAG--CT----C-A-AACCCT-TGG----GA-CCACAC
gi|21 : GTCAACATTCTAT--A--G--TGCCAA-CCCTGGGGA-TA--GCCTCG--T--A---ACTATTTGGTGCA---------GGGA-CT----A-A-GAACTT-TAG----AC-TCGCACGCgg
gi|25 : --G--TACCAA-CC-TGGG-------ATTTAC--------GACTATTTGGCGGA---------GGGA-CT----A-A-GATCCT-TAA----AA-TCACACAAAC
gi|24 : --TGCCAA-CC-CGGGGGACT--ACCCCC--C--G-GGACTATTTGGCGGA---------GGGA-TT------A-AAACAT-TAG----AA-TCACACa
gi|28 : --TGCCAA-CC-CGGAGG-TA--AGCCC----------------TGGCGGA---------GTGA-CT----G-C-AAACCT-TAG----TA-CTACACACA
gi|8 : TCC--C--AAGGACTATTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACA
gi|31 : cgtgtaaatgtaaatggatccatcctacttttatatagatttataaacttaagatatagttctgctgcgtaacatccaaaccaacaaaatcccgatattataccttttatat-GGATAATTTGGCAGA---------GGGA-TT----A-A-AA---C-TAG----GA-TCACACaa
gi|12 : cccttgACTATTTGGCAGA---------GGGA-C-----------ACCT-TAG----AA-TCAAAC
gi|33 : tttatttaaaccgaagtagttatgtggcggaacaccaacattaccgaaattccaaagttaacccttttatagcgtcaTACTTGGCGGA---------AGGA-CT----A-A-AAACCT-TTG----AA-TCACACACAC
gi|34 : CTTGGTGGA---------GGGA-CT----A-A-AAAGCT-TAG----AA-TCACACACAC
gi|35 : CTTGGCGGA---------GGGA-CT----A-A-AACCCT-TAG----AA-TTACA-ACAa
gi|5 : CCTGTTGGA---------GGGA-CT----A-T-AAACCT-TAG----TA-CCACACACGCag
gi|36 : ggttatTTCGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TTACAaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|11 : TGGCAGA---------GGGA-CT----A-A-AA-----TAGTGACAT-TCACACACACtccc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|23 ): CCAACACGGGAAGGTTCGATTCCCCGGGATCATTTGCAAGAAAGACTCAAATCCCTTAAAATTGCGACAC
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA
Alignments
lowQualScore : 1 11 444444 11 111 1 7777777 1 22 2222 1 1 11 22 1111 1111111 11 4444444444444444444 333333333333333333 1111
lowQualScore : 4 3 0 88 777777 44 1 888 0 1 5 3333333 6 3 77 2222 0 66 5 3 00 8 1 1 00 2222 0 8888888 0 22 1111111111111111111 4 1 4 4 66 4 2 1 333 1 3333 55 22 555555555555555555 444444444 1 333333 2 99 1 1111 1 1
lowQualScore : . . . .. ...... .. . ... . . . ....... . . .. .... . .. . . .. . . . .. .... . ....... . .. ................... . . . . .. . . . ... . .... .. .. .................. ......... . ...... . .. . .... . .
lowQualScore : 7 3 7 33 000000 77 0 333 7 0 0 3333333 7 3 33 2222 0 55 0 0 88 0 0 4 22 7777 7 3333333 6 66 8888888888888888888 5 0 4 4 33 0 9 8 000 6 3333 22 11 111111111111111111 888888888 2 333333 7 11 4 7777 4 4
consensus : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-ATA--CCCAATATCAACACCCAAACACAAGGAATC-TAGAT------GCACGGCGGCATGTCCAACA-CCACTA-TAACATACC--ATTTCC-TTACCTCGGCAACATCAGGATAAACCNACTAA-AGGTTAAAT-TAACCGACGGATCTATCCTTATTTT-CACAGN---TTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCTCAAA-A-TTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
Reference ( family-3947 ) : ACAACAATATACACAC-TAGTATTA--CCCCGACCCCCATA--CCCAATATCAANACCCAAACACAAGGGANCCTAGATTAACNCGCACGGCGGCATGTCCAACA-CCACTA-CAACATACC--GTTTCC-TTACCTCGGCAATATCAGGATAAACCAACTAA-AGGTTAAAT-TAACCGACGGGTNTATCCTTATTTTNCACAGN---TTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCTCNAA-A-TTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|1 : ACAACAACAAACACTC-TAATATTA--TATCGACCCC-AT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGAT----CCACACGGCGGCATGTCCAACA-CCACTC-CAACATAC---ATCACC-TTAACACGGCA-TATCGGGATAAACCAACTAA-AGGTTAAAT-TAACCGACAGGTATATCCCTATTTTTCACAGA---TTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACAGCAAAAACA-TA---------------A--AAATTCCAAA-A-TTAATCT-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AGCCC--GGG--GGC-T--TGCC-CC--C-GGGGTAACCTGGCGGA---------GGGA-CT----A-T-AA-TCCT-TAG----TA-CAAC-ACACA
gi|10 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaATT-AAAATAGTA---------------AC--AATCACACACA-CTCT-CA-TTTC-ATAGTCCACTTTCTA-TA---G-AGCC----AACCC--GGG--GA--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : gggTCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : -TTTC-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--GG--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA-tctcatttcatagtccaccttctatagagccaacctgggggtaacctcaggactatctggcagagggactaaaa
gi|12 : tctggcagagggactaaaatagtgacattcacacacactctcaGAAGTAGTTATGTGGCGGAACACC-AACAT--TA---------------CCGAAATTCCAAA-G-TTA-ACC-CTTT--------------TA-TA---G-CGTC----AAC--------------------------------TATTTGGCAGA---------GGGA-C------------ACCT-TAG----AA-TCAA-AC
gi|13 : tttatttaaaccTTCAA-A-TGAGGAC-TTT----AGTTCACACTTTACTA---CCTGTC----AATAT--TGG--------------CC--T-GGGACTATTTGACAAA---------GGGA-TT----A-A-TA-TCCT-CAG----AA-TCAC-ACACA
gi|14 : t-ATAGTCTGCACTCTA-TA---G-TGCCTGCCAATCT--GAG--AA--T----TCCCT--C-AGGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-AT-AC-T-GAG----AA-TAAC-ACACACactttagtgtgac
gi|15 : AGTTCACATTCTG-TT---G-TGTT----AAACC--TGG--GG--C--AAGTCGCGGC-GGGATAACGTAGCGGA---------GTTA-TT----A-GTAA-ACCT-TAG----AA-CAAC-ACAC
gi|16 : ta-ATAGTTCATACTCTA-TA---G-TGTC----GACCCT-GGG--GG--T----TTTAC--T-TAGACATTTTGGCAAA---------GGGA-CT----ATATAA-ACCT-TAA----AA-TCAC-
gi|17 : c-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--G---T--AACCTC-----AGGACTATCTGGCAGA---------GGGA-TT----A-A-AA------TAGTAACAA-TCAC-ACAC
gi|18 : cAGTCCACAATTTA-TA---T-TAGC----AACTC--GAG--GG--T----TTTCC--CTCGGATGATTTGGCGGA---------GAG--CT----C-A-AA-CCCT-TGG----GA-CCAC-AC
gi|19 : TAGTCCATACTCTA-TA---T-TTCT----AACCT--GAT--GG--T--CACCTCT--T-G--ACTATTTGGCAGA---------CGGA-CT----A-A-AA-GCCTAAAA----AA-CCAC-ACgg
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC---A--TCCAA-ATCAAAACCCAAACATA-GGGAACCTAGATTAAC----ACGGCGACATGTCCAACA-CCACTATTAACCTACC--ATTTCC-TTACCTCGGC-ATATCAGGATAAACCAACTAA-AGGTTAAAT-GAACCGACAGGTATATCCTTATTTT-CACAGT---TTTGGGAACT-----T-TAGAAACAGTTCT
gi|20 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaTAGTCCACCTTCTA-TA---G-AGCC----AACCT--AGG--GG--T--AACCT----C-AGGACTGTCTGGCAGA---------GAGA-TT----A-A-AA------TAGTAACAA-TCAC-ACA
gi|21 : GTCAACATTCTA-TA---G-TGCC----AACCCT-GGG--GA--T--AGCCTC-----GTAACTATTTGGTGCA---------GGGA-CT----A-A-GA-ACTT-TAG----AC-TCGC-ACGC
gi|22 : T-ACAGGCCAAACTCTA-TT---G-TGCC----AACCC--GGG--GG--C--AA--TCC-------------TGGCGGA----------GGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ATACA
gi|23 : CC----AACAC--GGGAAGG--TTCGATTCCC--C-GGGATCATTTGCAAGA---------AAGA-CT----C-A-AATCCCT-TAA----AA-TTGCGACAC
gi|24 : -TGCC----AACCC--GGG--GGACT--A-CCCCC--C-GGGACTATTTGGCGGA---------GGGA-TT------A-AA-ACAT-TAG----AA-TCAC-AC
gi|25 : ---G-TACC----AACCT--GGG--AT--T--TAC----------GACTATTTGGCGGA---------GGGA-CT----A-A-GA-TCCT-TAA----AA-TCAC-ACAAAC
gi|26 : AGTCCACACACTG-TA---G-TACC----AGCCC--AGG--GG--T--TACCTT------GGACTACTTAGTGGA---------AGGA-CT----a
gi|27 : TAGTTCACACCCAA-TT---C-TGCC----TTCCC--GGG--GA--T----TCTTC--C-GGGACTATTTCGCGGA---------GGGA-
gi|28 : -TGCC----AACCC--GGA--GG--T--AAGCCC--------------TGGCGGA---------GTGA-CT----G-C-AA-ACCT-TAG----TA-CTAC-ACACA
gi|29 : AGTCAACATCTTA-TA---G-TGCC----AACCC--GGG--G------AACCT----C-GGGATGACTTGGCGGA---------AGGA-
gi|3 : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT------GCA--GCGGCAAGTATCACAACCAGTAGTATCATACC--ATTTCT-TTACCTCGGCAACAT-AAAACAGACCCACTAG-AGATTAAAT-TAACCAAAGGATCTATCCAAATTT---ATAGT---TTTAGAAACG-----T-TAGAAACATTTCTGCGGCGGAACATC-AAAAC--TA---------------ACTAAATCTCCAA-A-TTATACC-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AACCT--GGG--GG--C--AAGCTCC--C-AGGACTACTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|31 : CCCT--T-GGGATAATTTGGCAGA---------GGGA-TT----A-A-AA----C-TAG----GA-TCAC-AC
gi|33 : TACTTGGCGGA---------AGGA-CT----A-A-AA-ACCT-TTG----AA-TCAC-ACACAC
gi|34 : TTGGTGGA---------GGGA-CT----A-A-AA-AGCT-TAG----AA-TCAC-ACACAC
gi|35 : cTTGGCGGA---------GGGA-CT----A-A-AA-CCCT-TAG----AA-TTAC-A-ACAa
gi|36 : cTTCGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ag
gi|4 : ATACTTTGTTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTATT-TTGCTTT-CACGGCACATTAAGAAACT-----G-TATTATTAGTTATGTGGTGGAACATA-AAAATA-TATATATGCAAAAGATGACGTAATCTCAAA-AATTTAACC-GTTT-ATATCCCATACTTTG-TA---G-TGCA----AACCT--GGG--GT--T-----CCCT--T-GGGACTATTTTGCGGA---------TGGAGCT------T-AA-TCCT-TAG----AA-TTAC-ATATACtccc
gi|5 : tagcatcgttGGA---------GGGA-CT----A-T-AA-ACCT-TAG----TA-CCAC-ACACGCac
gi|7 : ggttatcctgtt---TTTAGAAACTACGTGTATAAAATTAGTTTTGTGGCAGAACAT--GAAAT--TA---------------ATGAAACCTCTAA-A-ACAGACC-TTTTTATTGCCCACACTTTA-TATAAG-TGCC----AACACGGGGG--GG--T--TACCTCC--T---GACTGTTTGGCAGA---------AGGA-CT----C-A-AA-CCCT-TAG----AATTTAA-ACACaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|8 : TAAATGTAA---ATGGATCCATCCTACTTTTATATAGA---TTTATAAACT-----T-AAGATATAGTTCTGCTGCGTAACATC-CAAAC--CA---------------ACAAAATCCCGAT-A-TTATACC--TTT--------------TA-TA---T-TCCC----AA-----------------------------GGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACA
gi|9 : cgtgAGCCCTGTGACAGTACAT--AAAAT--TA---------------ACGAAATATCAAA-T-TTTAACCGTTTT-ATAGTCCACATTCTA-TG---A-TGCC----ATCCC--GTG--GA--T----TCTCC--C-GGAACCATCTGGAGGA---------GGAA-CT----C-G-AA-TTGT-TAG----AA-TCAT-ACACAaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA
Alignments
lowQualScore : 1 11 1 444 11 1 1 333 1 2 1 1 1 1 1111 1111111 11 4444444444444444444 333333333333333333 1111
lowQualScore : 1 3 88 3 222 44 2 3 777 6 3 6 6 0 5 5 1 0 1 8 888 88 5555 8888888 0 22 1111111111111111111 4 5 4 66 4 2 1 333 1 3333 55 22 555555555555555555 444444444 1 333333 2 99 1 1111 1 1
lowQualScore : . . .. . ... .. . . ... . . . . . . . . . . . ... .. .... ....... . .. ................... . . . .. . . . ... . .... .. .. .................. ......... . ...... . .. . .... . .
lowQualScore : 0 3 33 3 000 77 0 3 333 7 3 7 7 0 5 0 0 0 2 0 222 88 0000 3333333 6 66 8888888888888888888 5 0 4 33 0 9 8 000 6 3333 22 11 111111111111111111 888888888 2 333333 7 11 4 7777 4 4
consensus : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-GCACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
Reference ( family-3947 ) : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-ATA--CCCAATATCAACACCCAAACACAAGGAATC-TAGAT--GCACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---NTTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCTC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|1 : ACAACAACAAACACTC-TAATATTA--TATCGACCCC-AT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGATCCACACGGCGGCATGTCCAACA-CCACTC-CAACATA-CATCACC-TTAACACGGC-ATATCGGGATAAACCAAC-TAAAGGTTAAAT-TAACCGACAGGTATATCCCTATTTTT-CACAG---ATTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACAGCAAAAACA-TA---------------A--AAATTCC-AAA-ATTAATCT-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AGCCC--GGG--GGC-T--TGCC-CC--C-GGGGTAACCTGGCGGA---------GGGA-CT----A-T-AA-TCCT-TAG----TA-CAAC-ACACA
gi|10 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaATT-AAAATAGTA---------------AC--AATCAC-ACACACTCT-CA-TTTC-ATAGTCCACTTTCTA-TA---G-AGCC----AACCC--GGG--GA--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : gggTCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : -TTTC-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--GG--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA-tctcatttcatagtccaccttctatagagccaacctgggggtaacctcaggactatctggcagagggactaaaa
gi|12 : tctggcagagggactaaaatagtgacattcacacacactctcaGAAGTAGTTATGTGGCGGAACACC-AACAT--TA---------------CCGAAATTCC-AAA-GTTA-ACC-CTTT--------------TA-TA---G-CGTC----AAC--------------------------------TATTTGGCAGA---------GGGA-C------------ACCT-TAG----AA-TCAA-AC
gi|13 : tttatttaaaccAA-ATGAGGAC-TTT----AGTTCACACTTTACTA---CCTGTC----AATAT--TGG--------------CC--T-GGGACTATTTGACAAA---------GGGA-TT----A-A-TA-TCCT-CAG----AA-TCAC-ACACA
gi|14 : tttc-ATAGTCTGCACTCTA-TA---G-TGCCTGCCAATCT--GAG--AA--T----TCCCT--C-AGGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-AT-AC-T-GAG----AA-TAAC-ACACACactttagtgtgac
gi|15 : AGTTCACATTCTG-TT---G-TGTT----AAACC--TGG--GG--C--AAGTCGCGGC-GGGATAACGTAGCGGA---------GTTA-TT----A-GTAA-ACCT-TAG----AA-CAAC-ACAC
gi|16 : ta-ATAGTTCATACTCTA-TA---G-TGTC----GACCCT-GGG--GG--T----TTTAC--T-TAGACATTTTGGCAAA---------GGGA-CT----ATATAA-ACCT-TAA----AA-TCAC-
gi|17 : c-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--G---T--AACCTC-----AGGACTATCTGGCAGA---------GGGA-TT----A-A-AA------TAGTAACAA-TCAC-ACAC
gi|18 : cAGTCCACAATTTA-TA---T-TAGC----AACTC--GAG--GG--T----TTTCC--CTCGGATGATTTGGCGGA---------GAG--CT----C-A-AA-CCCT-TGG----GA-CCAC-AC
gi|19 : TAGTCCATACTCTA-TA---T-TTCT----AACCT--GAT--GG--T--CACCTCT--T-G--ACTATTTGGCAGA---------CGGA-CT----A-A-AA-GCCTAAAA----AA-CCAC-ACgg
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC-AT----CCAA-ATCAAAACCCAAACATAGGGAACC-TAGATTAACACGGCGACATGTCCAACA-CCACTATTAACCTACCATTTCC-TTACCTCGGC-ATATCAGGATAAACCAAC-TAAAGGTTAAAT-GAACCGACAGGTATATCCTTA-TTTT-CACAG---TTTTGGGAACT-----T-TAGAAACAGTTCT
gi|20 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaTAGTCCACCTTCTA-TA---G-AGCC----AACCT--AGG--GG--T--AACCT----C-AGGACTGTCTGGCAGA---------GAGA-TT----A-A-AA------TAGTAACAA-TCAC-ACA
gi|21 : GTCAACATTCTA-TA---G-TGCC----AACCCT-GGG--GA--T--AGCCTC-----GTAACTATTTGGTGCA---------GGGA-CT----A-A-GA-ACTT-TAG----AC-TCGC-ACGC
gi|22 : T-ACAGGCCAAACTCTA-TT---G-TGCC----AACCC--GGG--GG--C--AA--TCC-------------TGGCGGA----------GGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ATACA
gi|23 : CC----AACAC--GGGAAGG--TTCGATTCCC--C-GGGATCATTTGCAAGA---------AAGA-CT----C-A-AATCCCT-TAA----AA-TTGCGACAC
gi|24 : -TGCC----AACCC--GGG--GGACT--A-CCCCC--C-GGGACTATTTGGCGGA---------GGGA-TT------A-AA-ACAT-TAG----AA-TCAC-AC
gi|25 : ---G-TACC----AACCT--GGG--AT--T--TAC----------GACTATTTGGCGGA---------GGGA-CT----A-A-GA-TCCT-TAA----AA-TCAC-ACAAAC
gi|26 : AGTCCACACACTG-TA---G-TACC----AGCCC--AGG--GG--T--TACCTT------GGACTACTTAGTGGA---------AGGA-CT----a
gi|27 : TAGTTCACACCCAA-TT---C-TGCC----TTCCC--GGG--GA--T----TCTTC--C-GGGACTATTTCGCGGA---------GGGA-
gi|28 : -TGCC----AACCC--GGA--GG--T--AAGCCC--------------TGGCGGA---------GTGA-CT----G-C-AA-ACCT-TAG----TA-CTAC-ACACA
gi|29 : AGTCAACATCTTA-TA---G-TGCC----AACCC--GGG--G------AACCT----C-GGGATGACTTGGCGGA---------AGGA-
gi|3 : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT--GCA--GCGGCAAGTATCACAACCAGTAGTATCATACCATTTCT-TTACCTCGGCAACAT-AAAACAGACCCAC-TAGAGATTAAAT-TAACCAAAGGATCTATCCAAA-TTT---ATAG---TTTTAGAAACG-----T-TAGAAACATTTCTGCGGCGGAACATC-AAAAC--TA---------------ACTAAATCTC-CAA-ATTATACC-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AACCT--GGG--GG--C--AAGCTCC--C-AGGACTACTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|31 : CCCT--T-GGGATAATTTGGCAGA---------GGGA-TT----A-A-AA----C-TAG----GA-TCAC-AC
gi|33 : TACTTGGCGGA---------AGGA-CT----A-A-AA-ACCT-TTG----AA-TCAC-ACACAC
gi|34 : TTGGTGGA---------GGGA-CT----A-A-AA-AGCT-TAG----AA-TCAC-ACACAC
gi|35 : cTTGGCGGA---------GGGA-CT----A-A-AA-CCCT-TAG----AA-TTAC-A-ACAa
gi|36 : cTTCGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ag
gi|4 : TTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTAT-TTTG-CTTT-CACGGCACATTAAGAAACT-----G-TATTATTAGTTATGTGGTGGAACATA-AAAATA-TATATATGCAAAAGATGACGTAATCTCAAAA-ATTTAACC-GTTT-ATATCCCATACTTTG-TA---G-TGCA----AACCT--GGG--GT--T-----CCCT--T-GGGACTATTTTGCGGA---------TGGAGCT------T-AA-TCCT-TAG----AA-TTAC-ATATACtccc
gi|5 : tagcatcgttatactttgGGA---------GGGA-CT----A-T-AA-ACCT-TAG----TA-CCAC-ACACGCac
gi|7 : ggttatcctgttTTTAGAAACTACGTGTATAAAATTAGTTTTGTGGCAGAACAT--GAAAT--TA---------------ATGAAACCTC-TAA-AACAGACC-TTTTTATTGCCCACACTTTA-TATAAG-TGCC----AACACGGGGG--GG--T--TACCTCC--T---GACTGTTTGGCAGA---------AGGA-CT----C-A-AA-CCCT-TAG----AATTTAA-ACACaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|8 : TAAATGTAA---ATGGATCCATCCTAC-TTTTATATAG---ATTTATAAACT-----T-AAGATATAGTTCTGCTGCGTAACATC-CAAAC--CA---------------ACAAAATCCC-GAT-ATTATACC--TTT--------------TA-TA---T-TCCC----AA-----------------------------GGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACA
gi|9 : cgtgAGCCCTGTGACAGTACAT--AAAAT--TA---------------ACGAAATATC-AAA-TTTTAACCGTTTT-ATAGTCCACATTCTA-TG---A-TGCC----ATCCC--GTG--GA--T----TCTCC--C-GGAACCATCTGGAGGA---------GGAA-CT----C-G-AA-TTGT-TAG----AA-TCAT-ACACAaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA
Alignments
lowQualScore : 1 11 1 222 11 1 1 3333 1 2 1 1 1 111 2222222 11 4444444444444444444 333333333333333333 1111
lowQualScore : 1 3 88 3 333 6 44 2 3 9999 6 3 6 6 0 66 5 1 0 1 8 888 88 111 0 1111111 0 22 1111111111111111111 4 1 5 4 66 4 2 1 333 1 3333 55 22 555555555555555555 444444444 1 333333 2 99 1 1111 1 1
lowQualScore : . . .. . ... . .. . . .... . . . . . .. . . . . . ... .. ... . ....... . .. ................... . . . . .. . . . ... . .... .. .. .................. ......... . ...... . .. . .... . .
lowQualScore : 0 3 33 3 333 7 77 0 3 3333 7 3 7 7 0 55 0 0 0 2 0 222 88 777 7 4444444 6 66 8888888888888888888 5 1 0 4 33 0 9 8 000 6 3333 22 11 111111111111111111 888888888 2 333333 7 11 4 7777 4 4
consensus : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
Reference ( family-3947 ) : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|1 : ACAACAACAAACACTC-TAATATTA--TATCGACCCC-AT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGATCCA-CACGGCGGCATGTCCAACA-CCACTC-CAACATAC-ATCACC-TTAACACGGCA-TATCGGGATAAACCAAC-TAAAGGTTAAAT-TAACCGACAGGTATATCCCTATTTTT-CACAG---ATTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACAGCAAAAACA-TA---------------A--AAATTCC-AAA-ATTAATCT-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AGCCC--GGG--GGC-T--TGCC-CC--C-GGGGTAACCTGGCGGA---------GGGA-CT----A-T-AA-TCCT-TAG----TA-CAAC-ACACA
gi|10 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaATT-AAAATAGTA---------------AC--AATCAC-ACACACTCT-CA-TTTC-ATAGTCCACTTTCTA-TA---G-AGCC----AACCC--GGG--GA--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : gggTCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : -TTTC-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--GG--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA-tctcatttcatagtccaccttctatagagccaacctgggggtaacctcaggactatctggcagagggactaaaa
gi|12 : tctggcagagggactaaaatagtgacattcacacacactctca---ATTTA--AACC---------GAAGTAGTTATGTGGCGGAACACC-AACAT--TA---------------CCGAAATTCC-AAA-GTTA-ACC-CTTT--------------TA-TA---G-CGTC----AAC--------------------------------TATTTGGCAGA---------GGGA-C------------ACCT-TAG----AA-TCAA-AC
gi|13 : tttAA-ATGAGGAC-TTT----AGTTCACACTTTACTA---CCTGTC----AATAT--TGG--------------CC--T-GGGACTATTTGACAAA---------GGGA-TT----A-A-TA-TCCT-CAG----AA-TCAC-ACACA
gi|14 : tttc-ATAGTCTGCACTCTA-TA---G-TGCCTGCCAATCT--GAG--AA--T----TCCCT--C-AGGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-AT-AC-T-GAG----AA-TAAC-ACACACactttagtgtgac
gi|15 : AGTTCACATTCTG-TT---G-TGTT----AAACC--TGG--GG--C--AAGTCGCGGC-GGGATAACGTAGCGGA---------GTTA-TT----A-GTAA-ACCT-TAG----AA-CAAC-ACAC
gi|16 : ta-ATAGTTCATACTCTA-TA---G-TGTC----GACCCT-GGG--GG--T----TTTAC--T-TAGACATTTTGGCAAA---------GGGA-CT----ATATAA-ACCT-TAA----AA-TCAC-
gi|17 : c-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--G---T--AACCTC-----AGGACTATCTGGCAGA---------GGGA-TT----A-A-AA------TAGTAACAA-TCAC-ACAC
gi|18 : cAGTCCACAATTTA-TA---T-TAGC----AACTC--GAG--GG--T----TTTCC--CTCGGATGATTTGGCGGA---------GAG--CT----C-A-AA-CCCT-TGG----GA-CCAC-AC
gi|19 : TAGTCCATACTCTA-TA---T-TTCT----AACCT--GAT--GG--T--CACCTCT--T-G--ACTATTTGGCAGA---------CGGA-CT----A-A-AA-GCCTAAAA----AA-CCAC-ACgg
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC-AT---CC-AA-ATCAAAACCCAAACATAGGGAACC-TAGATT-AACACGGCGACATGTCCAACA-CCACTATTAACCTACCATTTCC-TTACCTCGGC-ATATCAGGATAAACCAAC-TAAAGGTTAAAT-GAACCGACAGGTATATCCTTA-TTTT-CACAG---TTTTGGGAACT-----T-TAGAAACAGTTCT
gi|20 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaTAGTCCACCTTCTA-TA---G-AGCC----AACCT--AGG--GG--T--AACCT----C-AGGACTGTCTGGCAGA---------GAGA-TT----A-A-AA------TAGTAACAA-TCAC-ACA
gi|21 : GTCAACATTCTA-TA---G-TGCC----AACCCT-GGG--GA--T--AGCCTC-----GTAACTATTTGGTGCA---------GGGA-CT----A-A-GA-ACTT-TAG----AC-TCGC-ACGC
gi|22 : T-ACAGGCCAAACTCTA-TT---G-TGCC----AACCC--GGG--GG--C--AA--TCC-------------TGGCGGA----------GGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ATACA
gi|23 : CC----AACAC--GGGAAGG--TTCGATTCCC--C-GGGATCATTTGCAAGA---------AAGA-CT----C-A-AATCCCT-TAA----AA-TTGCGACAC
gi|24 : -TGCC----AACCC--GGG--GGACT--A-CCCCC--C-GGGACTATTTGGCGGA---------GGGA-TT------A-AA-ACAT-TAG----AA-TCAC-AC
gi|25 : ---G-TACC----AACCT--GGG--AT--T--TAC----------GACTATTTGGCGGA---------GGGA-CT----A-A-GA-TCCT-TAA----AA-TCAC-ACAAAC
gi|26 : AGTCCACACACTG-TA---G-TACC----AGCCC--AGG--GG--T--TACCTT------GGACTACTTAGTGGA---------AGGA-CT----a
gi|27 : TAGTTCACACCCAA-TT---C-TGCC----TTCCC--GGG--GA--T----TCTTC--C-GGGACTATTTCGCGGA---------GGGA-
gi|28 : -TGCC----AACCC--GGA--GG--T--AAGCCC--------------TGGCGGA---------GTGA-CT----G-C-AA-ACCT-TAG----TA-CTAC-ACACA
gi|29 : AGTCAACATCTTA-TA---G-TGCC----AACCC--GGG--G------AACCT----C-GGGATGACTTGGCGGA---------AGGA-
gi|3 : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT--G-CA--GCGGCAAGTATCACAACCAGTAGTATCATACCATTTCT-TTACCTCGGCAACAT-AAAACAGACCCAC-TAGAGATTAAAT-TAACCAAAGGATCTATCCAAA-TTT---ATAG---TTTTAGAAACG-----T-TAGAAACATTTCTGCGGCGGAACATC-AAAAC--TA---------------ACTAAATCTC-CAA-ATTATACC-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AACCT--GGG--GG--C--AAGCTCC--C-AGGACTACTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|31 : CCCT--T-GGGATAATTTGGCAGA---------GGGA-TT----A-A-AA----C-TAG----GA-TCAC-AC
gi|33 : TACTTGGCGGA---------AGGA-CT----A-A-AA-ACCT-TTG----AA-TCAC-ACACAC
gi|34 : TTGGTGGA---------GGGA-CT----A-A-AA-AGCT-TAG----AA-TCAC-ACACAC
gi|35 : cTTGGCGGA---------GGGA-CT----A-A-AA-CCCT-TAG----AA-TTAC-A-ACAa
gi|36 : cTTCGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ag
gi|4 : TTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTAT-TTTG-CTTT-CACGGCACATTAAGAAACT-----G-TATTATTAGTTATGTGGTGGAACATA-AAAATA-TATATATGCAAAAGATGACGTAATCTCAAAA-ATTTAACC-GTTT-ATATCCCATACTTTG-TA---G-TGCA----AACCT--GGG--GT--T-----CCCT--T-GGGACTATTTTGCGGA---------TGGAGCT------T-AA-TCCT-TAG----AA-TTAC-ATATACtccc
gi|5 : tagcatcgttatactttgGGA---------GGGA-CT----A-T-AA-ACCT-TAG----TA-CCAC-ACACGCac
gi|7 : ggttatcctgttTTTAGAAACTACGTGTATAAAATTAGTTTTGTGGCAGAACAT--GAAAT--TA---------------ATGAAACCTC-TAA-AACAGACC-TTTTTATTGCCCACACTTTA-TATAAG-TGCC----AACACGGGGG--GG--T--TACCTCC--T---GACTGTTTGGCAGA---------AGGA-CT----C-A-AA-CCCT-TAG----AATTTAA-ACACaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|8 : TAAATGTAA---ATGGATCCATCCTAC-TTTTATATAG---ATTTATAAACT-----T-AAGATATAGTTCTGCTGCGTAACATC-CAAAC--CA---------------ACAAAATCCC-GAT-ATTATACC--TTT--------------TA-TA---T-TCCC----AA-----------------------------GGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACA
gi|9 : cgtgAGCCCTGTGACAGTACAT--AAAAT--TA---------------ACGAAATATC-AAA-TTTTAACCGTTTT-ATAGTCCACATTCTA-TG---A-TGCC----ATCCC--GTG--GA--T----TCTCC--C-GGAACCATCTGGAGGA---------GGAA-CT----C-G-AA-TTGT-TAG----AA-TCAT-ACACAaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA
Alignments
lowQualScore : 1 11 1 222 11 1 1 3333 1 2 1 1 1 111 2222222 11 4444444444444444444 333333333333333333 1111
lowQualScore : 1 3 88 3 333 6 44 2 3 9999 6 3 6 6 0 66 5 1 0 1 8 888 88 111 0 1111111 0 22 1111111111111111111 4 1 5 4 66 4 2 1 333 1 3333 55 22 555555555555555555 444444444 1 333333 2 99 1 1111 1 1
lowQualScore : . . .. . ... . .. . . .... . . . . . .. . . . . . ... .. ... . ....... . .. ................... . . . . .. . . . ... . .... .. .. .................. ......... . ...... . .. . .... . .
lowQualScore : 0 3 33 3 333 7 77 0 3 3333 7 3 7 7 0 55 0 0 0 2 0 222 88 777 7 4444444 6 66 8888888888888888888 5 1 0 4 33 0 9 8 000 6 3333 22 11 111111111111111111 888888888 2 333333 7 11 4 7777 4 4
consensus : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
Reference ( family-3947 ) : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|1 : ACAACAACAAACACTC-TAATATTA--TATCGACCCC-AT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGATCCA-CACGGCGGCATGTCCAACA-CCACTC-CAACATAC-ATCACC-TTAACACGGCA-TATCGGGATAAACCAAC-TAAAGGTTAAAT-TAACCGACAGGTATATCCCTATTTTT-CACAG---ATTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACAGCAAAAACA-TA---------------A--AAATTCC-AAA-ATTAATCT-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AGCCC--GGG--GGC-T--TGCC-CC--C-GGGGTAACCTGGCGGA---------GGGA-CT----A-T-AA-TCCT-TAG----TA-CAAC-ACACA
gi|10 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaATT-AAAATAGTA---------------AC--AATCAC-ACACACTCT-CA-TTTC-ATAGTCCACTTTCTA-TA---G-AGCC----AACCC--GGG--GA--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : gggTCTGGCAGA---------GGGA-CT----A-A-AA------TAGTGACAT-TCAC-ACACAC
gi|11 : -TTTC-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--GG--T--AACCT----C-AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA-tctcatttcatagtccaccttctatagagccaacctgggggtaacctcaggactatctggcagagggactaaaa
gi|12 : tctggcagagggactaaaatagtgacattcacacacactctca---ATTTA--AACC---------GAAGTAGTTATGTGGCGGAACACC-AACAT--TA---------------CCGAAATTCC-AAA-GTTA-ACC-CTTT--------------TA-TA---G-CGTC----AAC--------------------------------TATTTGGCAGA---------GGGA-C------------ACCT-TAG----AA-TCAA-AC
gi|13 : tttAA-ATGAGGAC-TTT----AGTTCACACTTTACTA---CCTGTC----AATAT--TGG--------------CC--T-GGGACTATTTGACAAA---------GGGA-TT----A-A-TA-TCCT-CAG----AA-TCAC-ACACA
gi|14 : tttc-ATAGTCTGCACTCTA-TA---G-TGCCTGCCAATCT--GAG--AA--T----TCCCT--C-AGGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-AT-AC-T-GAG----AA-TAAC-ACACACactttagtgtgac
gi|15 : AGTTCACATTCTG-TT---G-TGTT----AAACC--TGG--GG--C--AAGTCGCGGC-GGGATAACGTAGCGGA---------GTTA-TT----A-GTAA-ACCT-TAG----AA-CAAC-ACAC
gi|16 : ta-ATAGTTCATACTCTA-TA---G-TGTC----GACCCT-GGG--GG--T----TTTAC--T-TAGACATTTTGGCAAA---------GGGA-CT----ATATAA-ACCT-TAA----AA-TCAC-
gi|17 : c-ATAGTCCACCTTCTA-TA---G-AGCC----AACCT--GGG--G---T--AACCTC-----AGGACTATCTGGCAGA---------GGGA-TT----A-A-AA------TAGTAACAA-TCAC-ACAC
gi|18 : cAGTCCACAATTTA-TA---T-TAGC----AACTC--GAG--GG--T----TTTCC--CTCGGATGATTTGGCGGA---------GAG--CT----C-A-AA-CCCT-TGG----GA-CCAC-AC
gi|19 : TAGTCCATACTCTA-TA---T-TTCT----AACCT--GAT--GG--T--CACCTCT--T-G--ACTATTTGGCAGA---------CGGA-CT----A-A-AA-GCCTAAAA----AA-CCAC-ACgg
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC-AT---CC-AA-ATCAAAACCCAAACATAGGGAACC-TAGATT-AACACGGCGACATGTCCAACA-CCACTATTAACCTACCATTTCC-TTACCTCGGC-ATATCAGGATAAACCAAC-TAAAGGTTAAAT-GAACCGACAGGTATATCCTTA-TTTT-CACAG---TTTTGGGAACT-----T-TAGAAACAGTTCT
gi|20 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaTAGTCCACCTTCTA-TA---G-AGCC----AACCT--AGG--GG--T--AACCT----C-AGGACTGTCTGGCAGA---------GAGA-TT----A-A-AA------TAGTAACAA-TCAC-ACA
gi|21 : GTCAACATTCTA-TA---G-TGCC----AACCCT-GGG--GA--T--AGCCTC-----GTAACTATTTGGTGCA---------GGGA-CT----A-A-GA-ACTT-TAG----AC-TCGC-ACGC
gi|22 : T-ACAGGCCAAACTCTA-TT---G-TGCC----AACCC--GGG--GG--C--AA--TCC-------------TGGCGGA----------GGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ATACA
gi|23 : CC----AACAC--GGGAAGG--TTCGATTCCC--C-GGGATCATTTGCAAGA---------AAGA-CT----C-A-AATCCCT-TAA----AA-TTGCGACAC
gi|24 : -TGCC----AACCC--GGG--GGACT--A-CCCCC--C-GGGACTATTTGGCGGA---------GGGA-TT------A-AA-ACAT-TAG----AA-TCAC-AC
gi|25 : ---G-TACC----AACCT--GGG--AT--T--TAC----------GACTATTTGGCGGA---------GGGA-CT----A-A-GA-TCCT-TAA----AA-TCAC-ACAAAC
gi|26 : AGTCCACACACTG-TA---G-TACC----AGCCC--AGG--GG--T--TACCTT------GGACTACTTAGTGGA---------AGGA-CT----a
gi|27 : TAGTTCACACCCAA-TT---C-TGCC----TTCCC--GGG--GA--T----TCTTC--C-GGGACTATTTCGCGGA---------GGGA-
gi|28 : -TGCC----AACCC--GGA--GG--T--AAGCCC--------------TGGCGGA---------GTGA-CT----G-C-AA-ACCT-TAG----TA-CTAC-ACACA
gi|29 : AGTCAACATCTTA-TA---G-TGCC----AACCC--GGG--G------AACCT----C-GGGATGACTTGGCGGA---------AGGA-
gi|3 : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT--G-CA--GCGGCAAGTATCACAACCAGTAGTATCATACCATTTCT-TTACCTCGGCAACAT-AAAACAGACCCAC-TAGAGATTAAAT-TAACCAAAGGATCTATCCAAA-TTT---ATAG---TTTTAGAAACG-----T-TAGAAACATTTCTGCGGCGGAACATC-AAAAC--TA---------------ACTAAATCTC-CAA-ATTATACC-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AACCT--GGG--GG--C--AAGCTCC--C-AGGACTACTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
gi|31 : CCCT--T-GGGATAATTTGGCAGA---------GGGA-TT----A-A-AA----C-TAG----GA-TCAC-AC
gi|33 : TACTTGGCGGA---------AGGA-CT----A-A-AA-ACCT-TTG----AA-TCAC-ACACAC
gi|34 : TTGGTGGA---------GGGA-CT----A-A-AA-AGCT-TAG----AA-TCAC-ACACAC
gi|35 : cTTGGCGGA---------GGGA-CT----A-A-AA-CCCT-TAG----AA-TTAC-A-ACAa
gi|36 : cTTCGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TTAC-ag
gi|4 : TTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTAT-TTTG-CTTT-CACGGCACATTAAGAAACT-----G-TATTATTAGTTATGTGGTGGAACATA-AAAATA-TATATATGCAAAAGATGACGTAATCTCAAAA-ATTTAACC-GTTT-ATATCCCATACTTTG-TA---G-TGCA----AACCT--GGG--GT--T-----CCCT--T-GGGACTATTTTGCGGA---------TGGAGCT------T-AA-TCCT-TAG----AA-TTAC-ATATACtccc
gi|5 : tagcatcgttatactttgGGA---------GGGA-CT----A-T-AA-ACCT-TAG----TA-CCAC-ACACGCac
gi|7 : ggttatcctgttTTTAGAAACTACGTGTATAAAATTAGTTTTGTGGCAGAACAT--GAAAT--TA---------------ATGAAACCTC-TAA-AACAGACC-TTTTTATTGCCCACACTTTA-TATAAG-TGCC----AACACGGGGG--GG--T--TACCTCC--T---GACTGTTTGGCAGA---------AGGA-CT----C-A-AA-CCCT-TAG----AATTTAA-ACACaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|8 : TAAATGTAA---ATGGATCCATCCTAC-TTTTATATAG---ATTTATAAACT-----T-AAGATATAGTTCTGCTGCGTAACATC-CAAAC--CA---------------ACAAAATCCC-GAT-ATTATACC--TTT--------------TA-TA---T-TCCC----AA-----------------------------GGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACA
gi|9 : cgtgAGCCCTGTGACAGTACAT--AAAAT--TA---------------ACGAAATATC-AAA-TTTTAACCGTTTT-ATAGTCCACATTCTA-TG---A-TGCC----ATCCC--GTG--GA--T----TCTCC--C-GGAACCATCTGGAGGA---------GGAA-CT----C-G-AA-TTGT-TAG----AA-TCAT-ACACAaa
blockSeqs : T A AC C AAA C TA T A TAA C A T C A AA C A T A G TA TA CAC ACGTGTA T ATATATATGCAAAAGATG G A A C GG G T C TAA C TGCC GG AA GCAAGTCGCGGCG TGGAGAGTG G CCTTG T TC A TGAC T G
blockSeqs : C . . . . . A . . G . . G C . AA . C . G . AA T . T C AGTA T C . . TA . . . . . . T . GTTCGATTCCCCG . . AT T A . TGAC . .
blockSeqs : . A . C . T . TG T . T C TA G T . . AA . . . . . . T . GACTACCCCCCG . . A . T . TAAC . .
blockSeqs : . AC . . G A TA G T . . GA . . . . . . . . GTCACCTCTTG . . A . A . TAAC . .
blockSeqs : . T C TA A T . . TA . . . . . . . . GCAAGCTCCCA . . A . A . . . .
blockSeqs : . . CA G C . . AA . . . . . . . . GTTTTCCCTC . . A . A . . . .
blockSeqs : . TA . T . . T . . . . . . . . GTTACCTCCT . . A . C . . . .
blockSeqs : . A . . . . . . . . ATAACCTCA . . A . G . . . .
blockSeqs : . . . . . . . . GTAACCTCA . . C . A . . . .
blockSeqs : . . . . . . . ATTCCCTCA . . A . A . . . .
blockSeqs : . . . . . . . GTTTTACTT . . A . A . . . .
blockSeqs : . . . . . . . GTAACCTCA . . A . T . . . .
blockSeqs : . . . . . . . ATAGCCTCG . . A . A . . . .
blockSeqs : . . . . . . ATTCTTCCG . . C . A . . . .
blockSeqs : . . . . . . ATTCTCCCG . . A . A . . . .
blockSeqs : . . . . . . TAACCTCA . . G . A . . . .
blockSeqs : . . . . . . GTTACCTT . . A . C . . . .
blockSeqs : . . . . . . GTAAGCCC . . A . A . . . .
blockSeqs : . . . . . . TTCCCTTG . . A . T . . . .
blockSeqs : . . . . . . GCAATCC . . A . A . . . .
blockSeqs : . . . . . . AACCTCG . . A . C . . . .
blockSeqs : . . . . . TTTAC . . A . A . . . .
blockSeqs : . . . . CCTG . . A . T . . . .
blockSeqs : . . . . . . . C . . . . . .
blockSeqs : . . . . . . A . . . . . .
blockSeqs : . . C . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : NA* C* TA***************** GTNACCTCG*********
originalCons : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATA-TA---------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GG--T--AACCTCC--C-GGGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
finalCons : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTNA-TTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATC-AAAATTA-----------------ACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AACCC--GGG--GGTNACCTCG---------GGACTATTTGGCGGA---------GGGA-CT----A-A-AA-ACCT-TAG----AA-TCAC-ACACAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA
Alignments
lowQualScore : 1 11 1 222 11 1 1 3333 1 2 1 1 1 11 111 2222222 4444444444444444444 111111111111111111 1111
lowQualScore : 1 3 88 3 333 6 44 2 3 9999 6 3 6 6 0 66 5 1 0 1 8 1 66 111 0 1111111 0 7 4444444444444444444 4 1 5 4 44 4 55 0 1 333 1 3333 1 3 444444444444444444 555555555 1 222222 2 7 1 2222 1
lowQualScore : . . .. . ... . .. . . .... . . . . . .. . . . . . . .. ... . ....... . . ................... . . . . .. . .. . . ... . .... . . .................. ......... . ...... . . . .... .
lowQualScore : 0 3 33 3 333 7 77 0 3 3333 7 3 7 7 0 55 0 0 0 2 0 0 88 777 7 4444444 6 6 9999999999999999999 5 1 0 4 77 0 55 4 8 000 6 4444 6 2 444444444444444444 000000000 2 999999 8 5 4 1111 4
consensus : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTTATTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATCAAAA--T----------------TAACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AA-CCC-GGGG---G--TNACCT--C--GGGACTATTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACACAC
Reference ( family-3947 ) : ACAACAATANACACAC-TAATATTA--CCCCGACCCC-AT---CCCAATATCAACACCCAAACACAAGGAATC-TAGATC-G-CACGGCGGCATGTCCAACA-CCACTA-TAACATACCATTTCC-TTACCTCGGCAACATCAGGATAAACCNAC-TAAAGGTTAAAT-TAACCGACGGATCTATCCTNATTTT-CACAG---ATTTAGAAACT-----T-TAGAAACAGTTCTGCGGCGGAACATCAAAA--T----------------TAACGAAATCCC-AAA-ATTANACC-TTTT-ATAGTCCACACTCTA-TA---G-TGCC----AA-CCC-GGGG---G--TNACCT--C--GGGACTATTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACACAC
gi|1 : ACAACAACAAACACTC-TAATATTA--TATCGACCCC-AT---CCCAAT--CAACACCCAAACACAAAGAATC-TAGATCCA-CACGGCGGCATGTCCAACA-CCACTC-CAACATAC-ATCACC-TTAACACGGCA-TATCGGGATAAACCAAC-TAAAGGTTAAAT-TAACCGACAGGTATATCCCTATTTTTCACAG---ATTTAGGAACT-----T-TAGAAACAGTTCTGCGGCGGAACAGCAAAAACA----------------TAA--AAATTCC-AAA-ATTAATCT-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AG-CCC-GGGG---GCTTGCCCC--C--GGGGTAACCTGGCGGA---------GGGA-CT----A-T-AATCCT-TAG----TA-CAACACACA
gi|10 : tgaccagaagacccatcaagaagacgaaccaacaagcccgggggtaccagatacgtcacacctaaagtgtggggtacaggtactgccgggtatcttctagacaacgaactacgcagcacaacctaccacagagcaacaacctccgaaaatgaccaaccaagaagacactaccacaaacaagagaactagcgcccgatccaccttaactcatacacaccacacacaacgcacaaaacaacggtattctaagatataccctcaacacttaaacaacaATTAAAA--TAG--------------TAAC--AATCAC-ACACACTCT-CA-TTTC-ATAGTCCACTTTCTA-TA---G-AGCC----AA-CCC-GGGG---A--TAACCT--C--AGGACTATCTGGCAGA---------GGGA-CT----A-A-AA-----TAGTGACAT-TCACACACAC
gi|11 : gggTCTGGCAGA---------GGGA-CT----A-A-AA-----TAGTGACAT-TCACACACAC
gi|11 : -TTTC-ATAGTCCACCTTCTA-TA---G-AGCC----AA-CCT-GGGG---G--TAACCT--C--AGGACTATCTGGCAGA---------GGGA-CT----A-A-AAtctcatttcatagtccaccttctatagagccaacctgggggtaacctcaggactatctggcagagggactaaaa
gi|12 : tctggcagagggactaaaatagtgacattcacacacactctca---ATTTA--AACC---------GAAGTAGTTATGTGGCGGAACACCAACA--T----------------TACCGAAATTCC-AAA-GTTAACCC-TTT---------------TA-TA---G-CGTC----AA-C-----------------------------TATTTGGCAGA---------GGGA-C-----------ACCT-TAG----AA-TCAAAC
gi|13 : tttAA-ATGAGGAC-TTT----AGTTCACACTTTACTA---CCTGTC----AA-TAT-TGG----------CCT-----GGGACTATTTGACAAA---------GGGA-TT----A-A-TATCCT-CAG----AA-TCACACACA
gi|14 : tttc-ATAGTCTGCACTCTA-TA---G-TGCCTGCCAA-TCT-GAGA---A--TTCCCT--C--AGGACTATCTGGCGGGTGGAGAGTGGGGA-CTCCTTG-A-ATAC-T-GAG----AA-TAACACACACactttagtgtgac
gi|15 : AGTTCACATTCTG-TT---G-TGTT----AAACCT-GGGGCAAG--TCGCGG--C--GGGATAACGTAGCGGA---------GTTA-TT----A-GTAAACCT-TAG----AA-CAACACAC
gi|16 : ta-ATAGTTCATACTCTA-TA---G-TGTC----GA-CCCTGGGG---GTTTTACTT------AGACATTTTGGCAAA---------GGGA-CT----ATATAAACCT-TAA----AA-TCACA
gi|17 : c-ATAGTCCACCTTCTA-TA---G-AGCC----AA-CCT-GGGG------TAACCT--C--AGGACTATCTGGCAGA---------GGGA-TT----A-A-AA-----TAGTAACAA-TCACACAC
gi|18 : cAGTCCACAATTTA-TA---T-TAGC----AA-CTC-GAGG---GTTTTCCCT--C---GGATGATTTGGCGGA---------GAG--CT----C-A-AACCCT-TGG----GA-CCACAC
gi|19 : TAGTCCATACTCTA-TA---T-TTCT----AA-CCT-GATG---G--TCACCT--C--TTGACTATTTGGCAGA---------CGGA-CT----A-A-AAGCCTAAAA----AA-CCACACgg
gi|2 : ACAACAATATACACAC-TAGTATTA--CCCCGACCCC-AT---CC-AA-ATCAAAACCCAAACATAGGGAACC-TAGATT-AACACGGCGACATGTCCAACA-CCACTATTAACCTACCATTTCC-TTACCTCGGC-ATATCAGGATAAACCAAC-TAAAGGTTAAAT-GAACCGACAGGTATATCCTTATTTT-CACAG---TTTTGGGAACT-----T-TAGAAACAGTTCT
gi|20 : tgaccagaagacccatcaagaagacgaatcaacaagcccgggggtactaaatgcgtcacacctaaagtgtggggtacaagtactgtcgggtaccttctggacaaagaacttcgcagcacagcctaccacagagcaacaacctccgacaacgaccacccaagtatacaccactaaaaccaagagaactagtgccctccctgacatttcctgatccaccttgacacatacacaacacaaacaacgcacaacacagcgataatgtaagctaaactgtctctcaacaacaacacacatattcagccggtgctaattcccagcctctgctacccccaatatcttaaacaTAGTCCACCTTCTA-TA---G-AGCC----AA-CCT-AGGG---G--TAACCT--C--AGGACTGTCTGGCAGA---------GAGA-TT----A-A-AA-----TAGTAACAA-TCACACA
gi|21 : GTCAACATTCTA-TA---G-TGCC----AA-CCCTGGGG---A--TAGCCT--C--GTAACTATTTGGTGCA---------GGGA-CT----A-A-GAACTT-TAG----AC-TCGCACGC
gi|22 : T-ACAGGCCAAACTCTA-TT---G-TGCC----AA-CCC-GGGG---G--CAATCC--------------TGGCGGA---------GG-A-CT----A-A-AAACCT-TAG----AA-TTACATACA
gi|24 : -TGCC----AA-CCC-GGGG---GA-CTACCC--CCCGGGACTATTTGGCGGA---------GGGA-TT------A-AAACAT-TAG----AA-TCACAC
gi|25 : ---G-TACC----AA-CCT-GGGA---T--TTAC---------GACTATTTGGCGGA---------GGGA-CT----A-A-GATCCT-TAA----AA-TCACACAAAC
gi|26 : AGTCCACACACTG-TA---G-TACC----AG-CCC-AGGG---G--TTACCT--T---GGACTACTTAGTGGA---------AGGA-CT----a
gi|27 : TAGTTCACACCCAA-TT---C-TGCC----TT-CCC-GGGG---A--TTCTTC--C--GGGACTATTTCGCGGA---------GGGA-
gi|28 : -TGCC----AA-CCC-GGAG---G--TAAGCC--C-----------TGGCGGA---------GTGA-CT----G-C-AAACCT-TAG----TA-CTACACACA
gi|29 : AGTCAACATCTTA-TA---G-TGCC----AA-CCC-GGGG-------AACCT--C--GGGATGACTTGGCGGA---------AGGA-
gi|3 : ACAAAAGTACACACATACAAAGTCAACCCCCTACCCCCATAAACCCAATATTAACACCCAGTCA--AGGAATCATAGGT--G-CA--GCGGCAAGTATCACAACCAGTAGTATCATACCATTTCT-TTACCTCGGCAACAT-AAAACAGACCCAC-TAGAGATTAAAT-TAACCAAAGGATCTATCCAAATTT---ATAG---TTTTAGAAACG-----T-TAGAAACATTTCTGCGGCGGAACATCAAAA--C----------------TAACTAAATCTC-CAA-ATTATACC-TTTT-ACAGTCCACACTCTA-TT---G-TGCC----AA-CCT-GGGG---G--CAAGCTCCC--AGGACTACTTGGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TCACACACAC
gi|31 : CCT--T--GGGATAATTTGGCAGA---------GGGA-TT----A-A-AA---C-TAG----GA-TCACAC
gi|33 : cTACTTGGCGGA---------AGGA-CT----A-A-AAACCT-TTG----AA-TCACACACAC
gi|34 : TTGGTGGA---------GGGA-CT----A-A-AAAGCT-TAG----AA-TCACACACAC
gi|35 : cTTGGCGGA---------GGGA-CT----A-A-AACCCT-TAG----AA-TTACA-ACAa
gi|36 : cTTCGCGGA---------GGGA-CT----A-A-AAACCT-TAG----AA-TTACAag
gi|4 : TTTCCATTACCTCGGCAACAT-AAGATGATCCCACTTCTAGGTTATAT-TAACCGACGGATCTAT-TTTGCTTT-CACGGCACATTAAGAAACT-----G-TATTATTAGTTATGTGGTGGAACATAAAAA--TATATATATGCAAAAGATGACGTAATCTCAAAA-ATTTAACC-GTTT-ATATCCCATACTTTG-TA---G-TGCA----AA-CCT--GGG---G--TTCCCT--T--GGGACTATTTTGCGGA---------TGGAGCT------T-AATCCT-TAG----AA-TTACATATACtccc
gi|5 : tagcatcgttatactttgGGA---------GGGA-CT----A-T-AAACCT-TAG----TA-CCACACACGCac
gi|7 : ggttatcctgttTTTAGAAACTACGTGTATAAAATTAGTTTTGTGGCAGAACAT-GAAA--T----------------TAATGAAACCTC-TAA-AACAGACC-TTTTTATTGCCCACACTTTA-TATAAG-TGCC----AA-CAC-GGGG---GGGTTACCT--C--CTGACTGTTTGGCAGA---------AGGA-CT----C-A-AACCCT-TAG----AATTTAAACACaatcaagttctgaaaagtttgtgatattcatactggattactttaagtgttgcatacattggatttaaagtgaattctacagttggatttaactactagtgttaaagtgtaatattcatattggattaactataactagaagaactggaagccaaactttat
gi|8 : TAAATGTAA---ATGGATCCATCCTACTTTTATATAG---ATTTATAAACT-----T-AAGATATAGTTCTGCTGCGTAACATCCAAA--C----------------CAACAAAATCCC-GAT-ATTATACC-TTTT-ATATTCC-CA-------A---G--GAC----TA-TTT-GGCG---G----A--------GGGACTA-----------------------------A-A-A-ACCT-TAG----AA-TCACACA
gi|9 : cgtgAGCCCTGTGACAGTACAT-AAAA--T----------------TAACGAAATATC-AAA-TTTTAACCGTTTT-ATAGTCCACATTCTA-TG---A-TGCC----AT-CCC-GTGG---A--TTCTCC--C--GGAACCATCTGGAGGA---------GGAA-CT----C-G-AATTGT-TAG----AA-TCATACACAaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGGGGTCACCAGATATGTCGCACCTGAACAGTGGGGTACTAATGCATCTGTGAATCTTCAAGACCATATGAATCACAGCAACATAGCTATCAAAAGGACAGACAGCCATAGCAACAACCAACGACGGCAACACCCTCAGTTTAACAAGAACGCACAACTATCGCCCGCCCCGACCTGACCCGATCCACCTAGA
Unaligned ( gi|23 ): CCAACACGGGAAGGTTCGATTCCCCGGGATCATTTGCAAGAAAGACTCAAATCCCTTAAAATTGCGACAC
Unaligned ( gi|30 ): TATGTTTTAGTAGAAAATAAGGACTGGTGACATAGAAAAAACTTTACAA
Unaligned ( gi|32 ): AAACAGGAAATTCATAACAATAGGACCAAGAGTCTCAATTCA