lowQualScore : 11111 1 111111111111
lowQualScore : 4 1 3 4 1 4 7 1 3333 5 3333 1 444 77777777777 33333 2 1 222 222 1 1 6 1 22 11111 222 5 22 888888888888 7777777777 1
lowQualScore : . . . . . . . . .... . .... . ... ........... ..... . . ... ... . . . . .. ..... ... . .. ............ .......... .
lowQualScore : 3 5 1 4 5 9 6 5 1111 4 1111 5 666 00000000000 77777 8 5 777 777 5 5 2 5 11 11111 777 8 33 666666666666 0000000000 8
consensus : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--N-TGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
Reference ( gi|5 ) : AGCGTAGCGTCTCATCACA-CC-AA-GT-CAAAACCATTTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTAACGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--T-CGTAGT---TGTTTTAACGGACAATAGAATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|4 : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTAATTGTGGCTTCCGAGGAGCCTCCGATGCGGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGAAATATGTACATGTACG----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--T-TGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|16 : AGCGTAGCGTCTCACAAAA-CC-AA-GT-CAAAATAATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATGAAT-GAAA---CATTGGAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-ATT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--T-TGTAGT---TG-----------ATTAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAca
gi|22 : AGAGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCAGAT----TACAGCTGAGGTAATATGTATGTGTACA-------------------------------------------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-GAAAA-A--TCATTGTATTTTATTAATT--T-TGTAGT---TGTTTTAACGGACAATAGTATA--AC------------AAAGTTGATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|23 : AGCGTAGCGTCTCATCGCA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTG----ATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----AACAGCTGACGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGAATTTTATTAGTT--T-TGTAGT---TGTTTTAACGGACA
gi|6 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGGGCCGATTTGCTGCTGCGGAT----TAAAGCTGACGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-CAAAAAA-A--TCGTTGCATTTTATTAATT--T-CGTAGT---TGTTTTTACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATAGCAAgcattctgatacttttatggca
gi|8 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTCCCGACTTGCTGCTGCAGAT----TACAGCTGGCGTAATATGTACGTGTGCA----TATGAAT-AAAA---CACTGTCAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--T-TGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTTATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|13 : GCGTAGCGTCTCACCACA-CT-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTATGTGTGCA----TATAAAT-AAAA---CATTGTAAGTAAA-----------CTTT-----CCCCGAGAGGGTTGA-TTT---T---A-A-CAAAAAA-A--TCATTGCATTTTATTAATT--T-CATAGT---TGTTTTAACGGAAAATAGCGTA--AC------------ACAGTAAATAA----------TATATATCAAGGCACTCTGATACTTTTAT
gi|19 : GCGTAGCGTCTCACCACA-CC-AA-AT-CAAAATCAT------------CTATCTGATTGTAGCTTCCGAGGAGCCTCCGATGCCGGTTCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGT------GCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCATTTTATTAATT--T-TGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAAAAT----------TATATATCAAGGCACTCTAATATTTTTATGGCAA
gi|3 : GCGTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCG-GGCTTCCGCGGAGCCTCCGATGCCAGTGCCGATTTGCTGCGGCAGAT----TACAACTGACGTAATATATACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAG-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-ACC-AAAAA-A--TCGTTGCATATTATTAATT--T-TGTAGTAAAT-TTTTAACAGACAATATTATA--AC------------ATAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|12 : CGTAGCGTATCACCACA-CC-AA-GT-CAAAGTCAACTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTACATTTTATTAATT--T-TGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTCATGGC
gi|10 : CGTAGCGTCTCGCAACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCTACCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATAGGTACGTGTGCA----TATGAAT-AAAAAA-CATTGGAAGTAAA-----------TTTT-----CTCCGCGAACGTTAA-TTT---T---A-A-C-CAAAA-A--TCGTAGCATTTTATTAATT--T-CGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|7 : CGTAGCGTCTCACCATA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCATAATTATGTAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---A---A-A-C-AAAAATA--T--TTGCATTTTATTAATT--T-TGTAAT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTTATACTTTTATGGCA
gi|17 : CGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAAGAGCCTCCGA--------------TGCTGCTGCGGAT----TACAGCTGACGCAAAATGTACATGTACA----TATGAAT-AAAA---CATTGTAATT--------------TTTC-----CTCCACGAACGTTGA-TTT---T---A-A-C-AAAAA-C--TCGTTACAATTTATTATTT--A-TGTAG----TGTTTTATCGGACAATAGTATA--ATAGTATTATATTAATAGTTAATAT----------TATATAGCCAG---CTCTAATACTATTAT
gi|30 : CGTAGCGTCTCACCACA-CC-AA-GT-CGAAATCATCTA-AAACAATTCTGTCTGGTTGTGGCTTCCGATGAGCCTCCGATGCCGGTGCCGACT
gi|9 : GTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCAGGTGCCGACTTGCTACTGCAGAT----TACAGCTGGCATAATATGTACATGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTT-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAAA-A--TCATTGCATTTTATTAATA--T-TGTAGT---TGGTTTAACGAACAATAGTATA--AC------------AAAGTTAATAT----------TATACATCAAGGCACTCTGATACTTTTATGACAA
gi|11 : atTAACGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGACTTCCTAGGAGCCTCTGATGTCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGCAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTAAA-----------TTTC-----CTCTGAGAAAGTTGA-TTT---T---A-A-CAAAAAA-A--TCGTTGCATTTTATTAATT--A-TGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTGAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|2 : TAGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTC-AAACAAGTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGCTACCGATTTGCTGCTGCGAAT----TACAGCTGACGTAATATGTACGTGTGCG----TACGAAT-AAAA---CATCGTAAGTAAA-----------TTTC-----CTCCGCGAACGTCGA-TTT---T---A-T-C-AAAAA-A--TCGTTGCATTTTATTAGTTAATATGCAGT---TGTTTTAACGGACAATAGAATA--ACAGTTAT------ACAGTTGATAT----------TATATATTAAGGCACTCTAATACTATTATGGCAA
gi|18 : TAGCGCCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCGTGACTTCCGAGGAGTCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TACAGCTGACACAATATGTACATGTACA----TATGAAT-AAAA---CATT----GTAAA-----------TTTC-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAAA-C--TTGTTACATTTTATAAATT--A-TGTAGT---TGTTTTATCGGACAATAGTATA--GC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACT
gi|14 : AGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATAGTGGCTTCCGAGGAGCCTCCTATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATGAAT-AAAA---------------------------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAAA-AAAT-GTTGCATTTTATTAATT--A-TGCAGT---TGTTTTAACGGACAATAGTATA--ACACAGTTGT----ACAGTTGATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAAat
gi|15 : AGCGTCTCACCACA-CC-AAAGT-CGAAA----------ACACTTCTGACTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TAAAGCTGATGTAATATGTACGTGAGCA----TATGAAT-AAAA---CATCGTAAGTAAA-----------TTTT-----CTCCCCGAACGTTGA-TTTTTAT---A-A-A-AAAAA-A--TCGCTGTATTTCATTAATT--A-TGTAGT---TATATTAACGGACAATGGTATAACAC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACTATTATGGC
gi|24 : AGCGTCTCACCACA-CCTAA-GC-CAAAATCATCTA-AAACAATTCTGTATGATCGTGGCTTCCGAGTGGCCTCCAATGCCGGTGCCGACTTGCTGCTACGGATTATGTACAGCTGAAGTAATATGTACGTGTGCA----TATGAAT-AAAA---CATTGCAAGTAAA-----------TTTT-----CTCCCCGAACGTTGAGTTT---T---ACA-C-AAAAA-A---CGTTGCATTTGATTAAGT--A-TGTAGT---TGTTTTAACGGACAATAG
gi|1 : AGCGTCTCATCACA-CC-AA-ATTCAAAATCATCTACAAACA----TGTCTGATCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGTGGTT----TAAAGCTGACGTTATATGTACGCGTGCA----TATGAAT-TACA---CA---TAAAAAAAACCCCCCCCCCCCCC-----CCCCACGAACGTTGA-TTT---T---T-A-C-AAAAA-A--ACGTTGCATTTTATTAAAC--A-TGTAGT---TGTATTTCCAGACAATAGTATA--AC------------ACATTTAATATTATATATCTATATATATCAAGCCACTCTGATCCTATTATGGCt
gi|27 : acAGCGTCTCATCACA-CC-AAAGA-CAAAATCATCTA----CAAATATGTCTGACCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGTT----TAGAGCTGACGTAATATGTAC----GCA----TATGAAT-AACA---CATTGTAAGTAAA-----------TCCCCCCCACCCCGCGAACGTTAA-
gi|21 : CGTTTCACCACA-CC-AAAGT-CAAAACCATCTA-AAACAATTCTGTCTGATCGTGG------------CTCCGATGTTGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAAT-TACGTGTGCA----TATGAAT-AAAA---CATTGTAAGTTAA-----------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-C-CAAAAAA-A--TCGTTGCATTTTATTAATT--A-TATAGC---TGGTTTAACGGACAATAGTATA--AC------------ACCGTTAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAa
gi|20 : CGTCTCACCACA-CCCAA-GT-CAAAATCATCTA-AAACAATTGTGTCTAATCATGGCTTCCGAGTAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATGAATAAAAA---CATTGTAAGTAAA-----------TTCT-----TTC-ACGAATGTTGA-TTT---TTACA-A-A-AAAAA-A--TCGTTACATTTTATTAATT--A-TGTAGT---TGTTTTAATGGGCAAT------------------------AGTTAATAT----------TATATATCAAGACACTCTGATACTATTAT
gi|29 : GTCTCACCACATCC-AA-GT-CAAAATCATCTA-AAACGATTCTGTCTGATCGCGGCTTTCGATGAGCCTCTGGCGCCGGTGTCGACTTGCTGCTGCGGAT----TACATCTA
gi|26 : A-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCAGAGGAGCCTCCAATGCCGGTGCCGACATGCTGTTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATGAAT-AAAA---CGTTGTAAGTAAA-----------TTTC-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCA---TA-TAATT--A-TGTAGT---TGTTTTAACGcaagctgctgatgtcctgtatagtggtgcac
gi|25 : GTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAATATACTTGTGCA----TATGAAA-AAAAAAACATTGTAAATAAA-----------TTTC-----CTCCGCAAACGCTGA-GTT-------A-A-A-AAAAA-A--TC----------AATAAT------GTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------T-TATATCAATGCACTCTAATAATATTATGGCAA
gi|28 : cACGTACGTGTGCA----TATGAAT-AAAA---CATTATAAGTAAA-----------TTTC-----CTCCACAAACTTTGA-TTT---T---A-A-C-AAAAA-A--TCGTTGCACTTTATTAATT--A-TGTAGT---TGTTTTAACGGAAAAGAGTATA--AC------------ACAGTCAATAT----------TATATATCAAGGCACTCTGATATT
gi|31 : cTAACGGACAATAGTATA--AT------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTAagtat
gi|32 : a------------ACAGTTAATAT----------TATATATCAATACACTCTCATACTATAATGGCAA
gi|23 : aaGCATTCTGATACTTTTATGGCA
Alignments
lowQualScore : 111111111111
lowQualScore : 1 3 2 1 1 3333 3333 222 33 66666666666 33333 1 222 222 1 1 4 1 1 22 222 1 222 22 777777777777 6666666666 1
lowQualScore : . . . . . .... .... ... .. ........... ..... . ... ... . . . . . .. ... . ... .. ............ .......... .
lowQualScore : 5 0 9 4 4 0000 0000 555 44 88888888888 66666 4 666 666 5 5 4 5 5 00 666 0 666 11 222222222222 7777777777 4
consensus : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
Reference ( family-3876 ) : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|1 : AGCGTCTCATCACA-CC-AA-ATTCAAAATCATCTACAAACA----TGTCTGATCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGTGGTT----TAAAGCTGACGTTATATGTACGCGTGCA----TATG---AAT--TACACA---TAAAAAAAACCCCCCCCCCCCCC-----CCCCACGAACGTTGA-TTT---T---T-A-C-AAAA-A-A--ACGTTGCATTTTATTAAA---CATGTAGT---TGTATTTCCAGACAATAGTATA--AC------------ACATTTAATATTATATATCTATATATATCAAGCCACTCTGATCCTATTATGGC
gi|10 : acCGTAGCGTCTCGCAACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCTACCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATAGGTACGTGTGCA----TATG---AATAAAAAACATTGGAAGTAAA-----------TTTT-----CTCCGCGAACGTTAA-TTT---T---A-A-C-CAAA-A-A--TCGTAGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|11 : TAACGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGACTTCCTAGGAGCCTCTGATGTCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGCAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTC-----CTCTGAGAAAGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTGAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|12 : CGTAGCGTATCACCACA-CC-AA-GT-CAAAGTCAACTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTACATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTCATGGC
gi|13 : GCGTAGCGTCTCACCACA-CT-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTATGTGTGCA----TATA---AAT--AAAACATTGTAAGTAAA-----------CTTT-----CCCCGAGAGGGTTGA-TTT---T---A-A-CAAAAA-A-A--TCATTGCATTTTATTAAT---TTCATAGT---TGTTTTAACGGAAAATAGCGTA--AC------------ACAGTAAATAA----------TATATATCAAGGCACTCTGATACTTTTAT
gi|14 : AGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATAGTGGCTTCCGAGGAGCCTCCTATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAA------------------------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-AAAT-GTTGCATTTTATTAAT---TATGCAGT---TGTTTTAACGGACAATAGTATA--ACACAGTTGT----ACAGTTGATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|15 : AGCGTCTCACCACA-CC-AA-------AGTCG---A-AAACACTTCTGACTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TAAAGCTGATGTAATATGTACGTGAGCA----TATG---AAT--AAAACATCGTAAGTAAA-----------TTTT-----CTCCCCGAACGTTGA-TTTTTAT---A-A-A-AAAA-A-A--TCGCTGTATTTCATTAAT---TATGTAGT---TATATTAACGGACAATGGTATAACAC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACTATTATGGC
gi|16 : AGCGTAGCGTCTCACAAAA-CC-AA-GT-CAAAATAATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--GAAACATTGGAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-ATT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TG-----------ATTAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|17 : CGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAAGAGCCTCCGA--------------TGCTGCTGCGGAT----TACAGCTGACGCAAAATGTACATGTACA----TATG---AAT--AAAACATTGTAATT--------------TTTC-----CTCCACGAACGTTGA-TTT---T---A-A-C-AAAA-A-C--TCGTTACAATTTATTATT---TATGTAG----TGTTTTATCGGACAATAGTATA--ATAGTATTATATTAATAGTTAATAT----------TATATAGCCAG---CTCTAATACTATTAT
gi|18 : TAGCGCCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCGTGACTTCCGAGGAGTCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TACAGCTGACACAATATGTACATGTACA----TATG---AAT--AAAACATT----GTAAA-----------TTTC-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-C--TTGTTACATTTTATAAAT---TATGTAGT---TGTTTTATCGGACAATAGTATA--GC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACT
gi|19 : GCGTAGCGTCTCACCACA-CC-AA-AT-CAAAATCATCTA------------TCTGATTGTAGCTTCCGAGGAGCCTCCGATGCCGGTTCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGT------GCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAAAAT----------TATATATCAAGGCACTCTAATATTTTTATGGCAAat
gi|2 : TAGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTC-AAACAAGTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGCTACCGATTTGCTGCTGCGAAT----TACAGCTGACGTAATATGTACGTGTGCG----TACG---AAT--AAAACATCGTAAGTAAA-----------TTTC-----CTCCGCGAACGTCGA-TTT---T---A-T-C-AAAA-A-A--TCGTTGCATTTTATTAGTTAATATGCAGT---TGTTTTAACGGACAATAGAATA--ACAGTTAT------ACAGTTGATAT----------TATATATTAAGGCACTCTAATACTATTATGGCAA
gi|20 : CGTCTCACCACA-CCCAA-GT-CAAAATCATCTA-AAACAATTGTGTCTAATCATGGCTTCCGAGTAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AATA-AAAACATTGTAAGTAAA-----------TTCT------TTCACGAATGTTGA-TTT---TTACA-A-A-AAAA-A-A--TCGTTACATTTTATTAAT---TATGTAGT---TGTTTTAATGGGCAAT------------------------AGTTAATAT----------TATATATCAAGACACTCTGATACTATTAT
gi|21 : CGTTTCACCACA-CC-AAAGT-CAAAACCATCTA-AAACAATTCTGTCTGATCGTGGCT------------CCGATGTTGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAAT-TACGTGTGCA----TATG---AAT--AAAACATTGTAAGTTAA-----------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-C-C-AAAAAA-A--TCGTTGCATTTTATTAAT---TATATAGC---TGGTTTAACGGACAATAGTATA--AC------------ACCGTTAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCA
gi|22 : AGAGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCAGAT----TACAGCTGAGGTAATATGTATGTGTAC---------------------------------A-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-GAAA-A-A--TCATTGTATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------AAAGTTGATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|23 : AGCGTAGCGTCTCATCGCA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTG----ATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----AACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGAATTTTATTAGT---TTTGTAGT---TGTTTTAACGGACAGCATTCTG--AT------------AC
gi|23 : GCATTCTGATACTTTTATGGCAttttatggca
gi|24 : agcgtagcgtctcatcgcaccaagtcaaaatcatctaaaacaattctgattgtggcttccgaggagcctccgatgccggtgccgacttgctgctgcggataacagctgacgtaatatgtacgtgtgcatatgaataaaacattgtaagtaaattttctccgcgaacgttgattttaacaaaaaatcgttgaattttattagttttgtagttgttttaacggacaAGCGTCTCACCACA-CCTAA-GC-CAAAATCATCTA-AAACAATTCTGTATGATCGTGGCTTCCGAGTGGCCTCCAATGCCGGTGCCGACTTGCTGCTACGGATTATGTACAGCTGAAGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGCAAGTAAA-----------TTTT-----CTCCCCGAACGTTGAGTTT---T---ACA-C-AAAA-A-A---CGTTGCATTTGATTAAG---TATGTAGT---TGTTTTAACGGACAATAGT
gi|25 : CGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAATATACTTGTGCA----TATGAAAAAA--AAAACATTGTAAATAAA-----------TTTC-----CTCCGCAAACGCTGA--GT---T---A-A-A-AAAA-A-A--TC-------------AAT---AATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------T-TATATCAATGCACTCTAATAATATTATGGCAA
gi|26 : A-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCAGAGGAGCCTCCAATGCCGGTGCCGACATGCTGTTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--AAAACGTTGTAAGTAAA-----------TTTC-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCA---TA-TAAT---TATGTAGT---TGTTTTAACG
gi|27 : AGCGTCTCATCACA-CC-AAAGA-CAAAATCATCTA----CAAATATGTCTGACCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGTT----TAGAGCTGACGTAATATGTAC----GCA----TATG---AAT--AACACATTGTAAGTAAA-----------TCCCCCCCACCCCGCGAACGTTAA-
gi|28 : ACGTACGTGTGCA----TATG---AAT--AAAACATTATAAGTAAA-----------TTTC-----CTCCACAAACTTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCACTTTATTAAT---TATGTAGT---TGTTTTAACGGAAAAGAGTATA--AC------------ACAGTCAATAT----------TATATATCAAGGCACTCTGATATTa
gi|29 : cGTCTCACCACATCC-AA-GT-CAAAATCATCTA-AAACGATTCTGTCTGATCGCGGCTTTCGATGAGCCTCTGGCGCCGGTGTCGACTTGCTGCTGCGGAT----TACATCTagtat
gi|3 : GCGTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCG-GGCTTCCGCGGAGCCTCCGATGCCAGTGCCGATTTGCTGCGGCAGAT----TACAACTGACGTAATATATACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAG-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-ACC-AAAA-A-A--TCGTTGCATATTATTAAT---TTTGTAGTAAAT-TTTTAACAGACAATATTATA--AC------------ATAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAacaagctgctgatgtcctgtatagtggtgcac
gi|30 : CGTAGCGTCTCACCACA-CC-AA-GT-CGAAATCATCTA-AAACAATTCTGTCTGGTTGTGGCTTCCGATGAGCCTCCGATGCCGGTGCCGACT
gi|31 : TAACGGACAATAGTATA--AT------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTA
gi|32 : a------------ACAGTTAATAT----------TATATATCAATACACTCTCATACTATAATGGCAA
gi|4 : aaAGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTAATTGTGGCTTCCGAGGAGCCTCCGATGCGGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGAAATATGTACATGTACG----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|5 : AGCGTAGCGTCTCATCACA-CC-AA-GT-CAAAACCATTTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTAACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGAATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAca
gi|6 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGGGCCGATTTGCTGCTGCGGAT----TAAAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTTACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATAGCAA
gi|7 : CGTAGCGTCTCACCATA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCATAATTATG---TAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---A---A-A-C-AAAA-ATA--T--TTGCATTTTATTAAT---TTTGTAAT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTTATACTTTTATGGCA
gi|8 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTCCCGACTTGCTGCTGCAGAT----TACAGCTGGCGTAATATGTACGTGTGCA----TATG---AAT--AAAACACTGTCAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTTATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|9 : GTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCAGGTGCCGACTTGCTACTGCAGAT----TACAGCTGGCATAATATGTACATGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-A--TCATTGCATTTTATTAAT---ATTGTAGT---TGGTTTAACGAACAATAGTATA--AC------------AAAGTTAATAT----------TATACATCAAGGCACTCTGATACTTTTATGACAA
Alignments
lowQualScore : 111111111111
lowQualScore : 1 3 2 1 1 3333 3333 222 33 66666666666 33333 1 222 222 1 1 4 1 1 22 222 1 222 22 777777777777 6666666666 1
lowQualScore : . . . . . .... .... ... .. ........... ..... . ... ... . . . . . .. ... . ... .. ............ .......... .
lowQualScore : 5 0 9 4 4 0000 0000 555 44 88888888888 66666 4 666 666 5 5 4 5 5 00 666 0 666 11 222222222222 7777777777 4
consensus : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
Reference ( family-3876 ) : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|1 : AGCGTCTCATCACA-CC-AA-ATTCAAAATCATCTACAAACA----TGTCTGATCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGTGGTT----TAAAGCTGACGTTATATGTACGCGTGCA----TATG---AAT--TACACA---TAAAAAAAACCCCCCCCCCCCCC-----CCCCACGAACGTTGA-TTT---T---T-A-C-AAAA-A-A--ACGTTGCATTTTATTAAA---CATGTAGT---TGTATTTCCAGACAATAGTATA--AC------------ACATTTAATATTATATATCTATATATATCAAGCCACTCTGATCCTATTATGGC
gi|10 : acCGTAGCGTCTCGCAACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCTACCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATAGGTACGTGTGCA----TATG---AATAAAAAACATTGGAAGTAAA-----------TTTT-----CTCCGCGAACGTTAA-TTT---T---A-A-C-CAAA-A-A--TCGTAGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|11 : TAACGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGACTTCCTAGGAGCCTCTGATGTCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGCAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTC-----CTCTGAGAAAGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTGAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|12 : CGTAGCGTATCACCACA-CC-AA-GT-CAAAGTCAACTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTACATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTCATGGC
gi|13 : GCGTAGCGTCTCACCACA-CT-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTATGTGTGCA----TATA---AAT--AAAACATTGTAAGTAAA-----------CTTT-----CCCCGAGAGGGTTGA-TTT---T---A-A-CAAAAA-A-A--TCATTGCATTTTATTAAT---TTCATAGT---TGTTTTAACGGAAAATAGCGTA--AC------------ACAGTAAATAA----------TATATATCAAGGCACTCTGATACTTTTAT
gi|14 : AGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATAGTGGCTTCCGAGGAGCCTCCTATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAA------------------------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-AAAT-GTTGCATTTTATTAAT---TATGCAGT---TGTTTTAACGGACAATAGTATA--ACACAGTTGT----ACAGTTGATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|15 : AGCGTCTCACCACA-CC-AA-------AGTCG---A-AAACACTTCTGACTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TAAAGCTGATGTAATATGTACGTGAGCA----TATG---AAT--AAAACATCGTAAGTAAA-----------TTTT-----CTCCCCGAACGTTGA-TTTTTAT---A-A-A-AAAA-A-A--TCGCTGTATTTCATTAAT---TATGTAGT---TATATTAACGGACAATGGTATAACAC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACTATTATGGC
gi|16 : AGCGTAGCGTCTCACAAAA-CC-AA-GT-CAAAATAATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--GAAACATTGGAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-ATT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TG-----------ATTAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|17 : CGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAAGAGCCTCCGA--------------TGCTGCTGCGGAT----TACAGCTGACGCAAAATGTACATGTACA----TATG---AAT--AAAACATTGTAATT--------------TTTC-----CTCCACGAACGTTGA-TTT---T---A-A-C-AAAA-A-C--TCGTTACAATTTATTATT---TATGTAG----TGTTTTATCGGACAATAGTATA--ATAGTATTATATTAATAGTTAATAT----------TATATAGCCAG---CTCTAATACTATTAT
gi|18 : TAGCGCCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCGTGACTTCCGAGGAGTCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TACAGCTGACACAATATGTACATGTACA----TATG---AAT--AAAACATT----GTAAA-----------TTTC-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-C--TTGTTACATTTTATAAAT---TATGTAGT---TGTTTTATCGGACAATAGTATA--GC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACT
gi|19 : GCGTAGCGTCTCACCACA-CC-AA-AT-CAAAATCATCTA------------TCTGATTGTAGCTTCCGAGGAGCCTCCGATGCCGGTTCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGT------GCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAAAAT----------TATATATCAAGGCACTCTAATATTTTTATGGCAAat
gi|2 : TAGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTC-AAACAAGTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGCTACCGATTTGCTGCTGCGAAT----TACAGCTGACGTAATATGTACGTGTGCG----TACG---AAT--AAAACATCGTAAGTAAA-----------TTTC-----CTCCGCGAACGTCGA-TTT---T---A-T-C-AAAA-A-A--TCGTTGCATTTTATTAGTTAATATGCAGT---TGTTTTAACGGACAATAGAATA--ACAGTTAT------ACAGTTGATAT----------TATATATTAAGGCACTCTAATACTATTATGGCAA
gi|20 : CGTCTCACCACA-CCCAA-GT-CAAAATCATCTA-AAACAATTGTGTCTAATCATGGCTTCCGAGTAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AATA-AAAACATTGTAAGTAAA-----------TTCT------TTCACGAATGTTGA-TTT---TTACA-A-A-AAAA-A-A--TCGTTACATTTTATTAAT---TATGTAGT---TGTTTTAATGGGCAAT------------------------AGTTAATAT----------TATATATCAAGACACTCTGATACTATTAT
gi|21 : CGTTTCACCACA-CC-AAAGT-CAAAACCATCTA-AAACAATTCTGTCTGATCGTGGCT------------CCGATGTTGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAAT-TACGTGTGCA----TATG---AAT--AAAACATTGTAAGTTAA-----------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-C-C-AAAAAA-A--TCGTTGCATTTTATTAAT---TATATAGC---TGGTTTAACGGACAATAGTATA--AC------------ACCGTTAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCA
gi|22 : AGAGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCAGAT----TACAGCTGAGGTAATATGTATGTGTAC---------------------------------A-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-GAAA-A-A--TCATTGTATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------AAAGTTGATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|23 : AGCGTAGCGTCTCATCGCA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTG----ATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----AACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGAATTTTATTAGT---TTTGTAGT---TGTTTTAACGGACAGCATTCTG--AT------------AC
gi|23 : GCATTCTGATACTTTTATGGCAttttatggca
gi|24 : agcgtagcgtctcatcgcaccaagtcaaaatcatctaaaacaattctgattgtggcttccgaggagcctccgatgccggtgccgacttgctgctgcggataacagctgacgtaatatgtacgtgtgcatatgaataaaacattgtaagtaaattttctccgcgaacgttgattttaacaaaaaatcgttgaattttattagttttgtagttgttttaacggacaAGCGTCTCACCACA-CCTAA-GC-CAAAATCATCTA-AAACAATTCTGTATGATCGTGGCTTCCGAGTGGCCTCCAATGCCGGTGCCGACTTGCTGCTACGGATTATGTACAGCTGAAGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGCAAGTAAA-----------TTTT-----CTCCCCGAACGTTGAGTTT---T---ACA-C-AAAA-A-A---CGTTGCATTTGATTAAG---TATGTAGT---TGTTTTAACGGACAATAGT
gi|25 : CGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAATATACTTGTGCA----TATGAAAAAA--AAAACATTGTAAATAAA-----------TTTC-----CTCCGCAAACGCTGA--GT---T---A-A-A-AAAA-A-A--TC-------------AAT---AATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------T-TATATCAATGCACTCTAATAATATTATGGCAA
gi|26 : A-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCAGAGGAGCCTCCAATGCCGGTGCCGACATGCTGTTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--AAAACGTTGTAAGTAAA-----------TTTC-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCA---TA-TAAT---TATGTAGT---TGTTTTAACG
gi|27 : AGCGTCTCATCACA-CC-AAAGA-CAAAATCATCTA----CAAATATGTCTGACCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGTT----TAGAGCTGACGTAATATGTAC----GCA----TATG---AAT--AACACATTGTAAGTAAA-----------TCCCCCCCACCCCGCGAACGTTAA-
gi|28 : ACGTACGTGTGCA----TATG---AAT--AAAACATTATAAGTAAA-----------TTTC-----CTCCACAAACTTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCACTTTATTAAT---TATGTAGT---TGTTTTAACGGAAAAGAGTATA--AC------------ACAGTCAATAT----------TATATATCAAGGCACTCTGATATTa
gi|29 : cGTCTCACCACATCC-AA-GT-CAAAATCATCTA-AAACGATTCTGTCTGATCGCGGCTTTCGATGAGCCTCTGGCGCCGGTGTCGACTTGCTGCTGCGGAT----TACATCTagtat
gi|3 : GCGTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCG-GGCTTCCGCGGAGCCTCCGATGCCAGTGCCGATTTGCTGCGGCAGAT----TACAACTGACGTAATATATACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAG-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-ACC-AAAA-A-A--TCGTTGCATATTATTAAT---TTTGTAGTAAAT-TTTTAACAGACAATATTATA--AC------------ATAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAacaagctgctgatgtcctgtatagtggtgcac
gi|30 : CGTAGCGTCTCACCACA-CC-AA-GT-CGAAATCATCTA-AAACAATTCTGTCTGGTTGTGGCTTCCGATGAGCCTCCGATGCCGGTGCCGACT
gi|31 : TAACGGACAATAGTATA--AT------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTA
gi|32 : a------------ACAGTTAATAT----------TATATATCAATACACTCTCATACTATAATGGCAA
gi|4 : aaAGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTAATTGTGGCTTCCGAGGAGCCTCCGATGCGGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGAAATATGTACATGTACG----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|5 : AGCGTAGCGTCTCATCACA-CC-AA-GT-CAAAACCATTTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTAACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGAATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAca
gi|6 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGGGCCGATTTGCTGCTGCGGAT----TAAAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTTACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATAGCAA
gi|7 : CGTAGCGTCTCACCATA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCATAATTATG---TAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---A---A-A-C-AAAA-ATA--T--TTGCATTTTATTAAT---TTTGTAAT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTTATACTTTTATGGCA
gi|8 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTCCCGACTTGCTGCTGCAGAT----TACAGCTGGCGTAATATGTACGTGTGCA----TATG---AAT--AAAACACTGTCAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTTATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|9 : GTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCAGGTGCCGACTTGCTACTGCAGAT----TACAGCTGGCATAATATGTACATGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-A--TCATTGCATTTTATTAAT---ATTGTAGT---TGGTTTAACGAACAATAGTATA--AC------------AAAGTTAATAT----------TATACATCAAGGCACTCTGATACTTTTATGACAA
blockSeqs : T C A . . TATG TAAT AAA AA . CCCCA G TTA TAC C C A A T AA TAA T AAA AC AGTATTATATTA . T
blockSeqs : . T A . . . . . A . . . . . . . A . . . . A . . ACAGTTGT . A
blockSeqs : . . . . . . . . . . . . . . . . A . . . . T . . AGTTAT . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . .
blockSeqCons : *********** **********
originalCons : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
finalCons : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
Alignments
lowQualScore : 111111111111
lowQualScore : 1 3 2 1 1 3333 3333 222 33 66666666666 33333 1 222 222 1 1 4 1 1 22 222 1 222 22 777777777777 6666666666 1
lowQualScore : . . . . . .... .... ... .. ........... ..... . ... ... . . . . . .. ... . ... .. ............ .......... .
lowQualScore : 5 0 9 4 4 0000 0000 555 44 88888888888 66666 4 666 666 5 5 4 5 5 00 666 0 666 11 222222222222 7777777777 4
consensus : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
Reference ( family-3876 ) : AGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TNTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|1 : AGCGTCTCATCACA-CC-AA-ATTCAAAATCATCTACAAACA----TGTCTGATCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGTGGTT----TAAAGCTGACGTTATATGTACGCGTGCA----TATG---AAT--TACACA---TAAAAAAAACCCCCCCCCCCCCC-----CCCCACGAACGTTGA-TTT---T---T-A-C-AAAA-A-A--ACGTTGCATTTTATTAAA---CATGTAGT---TGTATTTCCAGACAATAGTATA--AC------------ACATTTAATATTATATATCTATATATATCAAGCCACTCTGATCCTATTATGGC
gi|10 : acCGTAGCGTCTCGCAACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCTACCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATAGGTACGTGTGCA----TATG---AATAAAAAACATTGGAAGTAAA-----------TTTT-----CTCCGCGAACGTTAA-TTT---T---A-A-C-CAAA-A-A--TCGTAGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|11 : TAACGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGACTTCCTAGGAGCCTCTGATGTCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGCAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTC-----CTCTGAGAAAGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTGAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|12 : CGTAGCGTATCACCACA-CC-AA-GT-CAAAGTCAACTA-AAACAATTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTACATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTCATGGC
gi|13 : GCGTAGCGTCTCACCACA-CT-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTATGTGTGCA----TATA---AAT--AAAACATTGTAAGTAAA-----------CTTT-----CCCCGAGAGGGTTGA-TTT---T---A-A-CAAAAA-A-A--TCATTGCATTTTATTAAT---TTCATAGT---TGTTTTAACGGAAAATAGCGTA--AC------------ACAGTAAATAA----------TATATATCAAGGCACTCTGATACTTTTAT
gi|14 : AGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATAGTGGCTTCCGAGGAGCCTCCTATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAA------------------------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-AAAT-GTTGCATTTTATTAAT---TATGCAGT---TGTTTTAACGGACAATAGTATA--ACACAGTTGT----ACAGTTGATAT----------TATATATCAAGGCACTCTGATACTATTATGGCAA
gi|15 : AGCGTCTCACCACA-CC-AA-------AGTCG---A-AAACACTTCTGACTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TAAAGCTGATGTAATATGTACGTGAGCA----TATG---AAT--AAAACATCGTAAGTAAA-----------TTTT-----CTCCCCGAACGTTGA-TTTTTAT---A-A-A-AAAA-A-A--TCGCTGTATTTCATTAAT---TATGTAGT---TATATTAACGGACAATGGTATAACAC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACTATTATGGC
gi|16 : AGCGTAGCGTCTCACAAAA-CC-AA-GT-CAAAATAATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--GAAACATTGGAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-ATT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TG-----------ATTAGTATA--AC------------AAAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|17 : CGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAAGAGCCTCCGA--------------TGCTGCTGCGGAT----TACAGCTGACGCAAAATGTACATGTACA----TATG---AAT--AAAACATTGTAATT--------------TTTC-----CTCCACGAACGTTGA-TTT---T---A-A-C-AAAA-A-C--TCGTTACAATTTATTATT---TATGTAG----TGTTTTATCGGACAATAGTATA--ATAGTATTATATTAATAGTTAATAT----------TATATAGCCAG---CTCTAATACTATTAT
gi|18 : TAGCGCCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCGTGACTTCCGAGGAGTCTCCGATGCCGGTGCTGACTTGCTGCTGCGGAT----TACAGCTGACACAATATGTACATGTACA----TATG---AAT--AAAACATT----GTAAA-----------TTTC-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-C--TTGTTACATTTTATAAAT---TATGTAGT---TGTTTTATCGGACAATAGTATA--GC------------ACAGTTAATAT----------TATATATCAAGACACTCTGATACT
gi|19 : GCGTAGCGTCTCACCACA-CC-AA-AT-CAAAATCATCTA------------TCTGATTGTAGCTTCCGAGGAGCCTCCGATGCCGGTTCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGT------GCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAAAAT----------TATATATCAAGGCACTCTAATATTTTTATGGCAAat
gi|2 : TAGCGTTTCACCAAA-CC-AA-GT-CAAAATCATCTC-AAACAAGTCTGTCTGATCGTGGCTTCCGAGGAGCCTCCGATGCCGCTACCGATTTGCTGCTGCGAAT----TACAGCTGACGTAATATGTACGTGTGCG----TACG---AAT--AAAACATCGTAAGTAAA-----------TTTC-----CTCCGCGAACGTCGA-TTT---T---A-T-C-AAAA-A-A--TCGTTGCATTTTATTAGTTAATATGCAGT---TGTTTTAACGGACAATAGAATA--ACAGTTAT------ACAGTTGATAT----------TATATATTAAGGCACTCTAATACTATTATGGCAA
gi|20 : CGTCTCACCACA-CCCAA-GT-CAAAATCATCTA-AAACAATTGTGTCTAATCATGGCTTCCGAGTAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCA----TATG---AATA-AAAACATTGTAAGTAAA-----------TTCT------TTCACGAATGTTGA-TTT---TTACA-A-A-AAAA-A-A--TCGTTACATTTTATTAAT---TATGTAGT---TGTTTTAATGGGCAAT------------------------AGTTAATAT----------TATATATCAAGACACTCTGATACTATTAT
gi|21 : CGTTTCACCACA-CC-AAAGT-CAAAACCATCTA-AAACAATTCTGTCTGATCGTGGCT------------CCGATGTTGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAAT-TACGTGTGCA----TATG---AAT--AAAACATTGTAAGTTAA-----------TTTC-----CTCCGCGAACGTTGA-TTT---T---A-C-C-AAAAAA-A--TCGTTGCATTTTATTAAT---TATATAGC---TGGTTTAACGGACAATAGTATA--AC------------ACCGTTAATAT----------TATATATCAAGGCACTCTGATACTATTATGGCA
gi|22 : AGAGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCAGTGCCGACTTGCTGCTGCAGAT----TACAGCTGAGGTAATATGTATGTGTAC---------------------------------A-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-GAAA-A-A--TCATTGTATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------AAAGTTGATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|23 : AGCGTAGCGTCTCATCGCA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTG----ATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----AACAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGAATTTTATTAGT---TTTGTAGT---TGTTTTAACGGACAGCATTCTG--AT------------AC
gi|23 : GCATTCTGATACTTTTATGGCAttttatggca
gi|24 : agcgtagcgtctcatcgcaccaagtcaaaatcatctaaaacaattctgattgtggcttccgaggagcctccgatgccggtgccgacttgctgctgcggataacagctgacgtaatatgtacgtgtgcatatgaataaaacattgtaagtaaattttctccgcgaacgttgattttaacaaaaaatcgttgaattttattagttttgtagttgttttaacggacaAGCGTCTCACCACA-CCTAA-GC-CAAAATCATCTA-AAACAATTCTGTATGATCGTGGCTTCCGAGTGGCCTCCAATGCCGGTGCCGACTTGCTGCTACGGATTATGTACAGCTGAAGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGCAAGTAAA-----------TTTT-----CTCCCCGAACGTTGAGTTT---T---ACA-C-AAAA-A-A---CGTTGCATTTGATTAAG---TATGTAGT---TGTTTTAACGGACAATAGT
gi|25 : CGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGTAAAATATACTTGTGCA----TATGAAAAAA--AAAACATTGTAAATAAA-----------TTTC-----CTCCGCAAACGCTGA--GT---T---A-A-A-AAAA-A-A--TC-------------AAT---AATGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------T-TATATCAATGCACTCTAATAATATTATGGCAA
gi|26 : A-GT-CAAAATCATCTA-AAACAATTCTGTCTGATCGTGGCTTCAGAGGAGCCTCCAATGCCGGTGCCGACATGCTGTTGCGGAT----TACAGCTGACATAATATGTACGTGTGCA----TATG---AAT--AAAACGTTGTAAGTAAA-----------TTTC-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCA---TA-TAAT---TATGTAGT---TGTTTTAACG
gi|27 : AGCGTCTCATCACA-CC-AAAGA-CAAAATCATCTA----CAAATATGTCTGACCATGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGTT----TAGAGCTGACGTAATATGTAC----GCA----TATG---AAT--AACACATTGTAAGTAAA-----------TCCCCCCCACCCCGCGAACGTTAA-
gi|28 : ACGTACGTGTGCA----TATG---AAT--AAAACATTATAAGTAAA-----------TTTC-----CTCCACAAACTTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCACTTTATTAAT---TATGTAGT---TGTTTTAACGGAAAAGAGTATA--AC------------ACAGTCAATAT----------TATATATCAAGGCACTCTGATATTa
gi|29 : cGTCTCACCACATCC-AA-GT-CAAAATCATCTA-AAACGATTCTGTCTGATCGCGGCTTTCGATGAGCCTCTGGCGCCGGTGTCGACTTGCTGCTGCGGAT----TACATCTagtat
gi|3 : GCGTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTTTGTCTGATCG-GGCTTCCGCGGAGCCTCCGATGCCAGTGCCGATTTGCTGCGGCAGAT----TACAACTGACGTAATATATACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAG-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-ACC-AAAA-A-A--TCGTTGCATATTATTAAT---TTTGTAGTAAAT-TTTTAACAGACAATATTATA--AC------------ATAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAacaagctgctgatgtcctgtatagtggtgcac
gi|30 : CGTAGCGTCTCACCACA-CC-AA-GT-CGAAATCATCTA-AAACAATTCTGTCTGGTTGTGGCTTCCGATGAGCCTCCGATGCCGGTGCCGACT
gi|31 : TAACGGACAATAGTATA--AT------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTA
gi|32 : a------------ACAGTTAATAT----------TATATATCAATACACTCTCATACTATAATGGCAA
gi|4 : aaAGCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTAATTGTGGCTTCCGAGGAGCCTCCGATGCGGGTGCCGACTTGCTGCTGCGGAT----TACAGCTGACGAAATATGTACATGTACG----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGC
gi|5 : AGCGTAGCGTCTCATCACA-CC-AA-GT-CAAAACCATTTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTGCCGACTTGCTGCTGCGGAT----TACAGCTAACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTAACGGACAATAGAATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAAca
gi|6 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAACCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGGGCCGATTTGCTGCTGCGGAT----TAAAGCTGACGTAATATGTACGTGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---T---A-A-CAAAAA-A-A--TCGTTGCATTTTATTAAT---TTCGTAGT---TGTTTTTACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTGATACTTTTATAGCAA
gi|7 : CGTAGCGTCTCACCATA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCCGGTGTCGACTTGCTGCTGCGGAT----TACAGCTGACGTAATATGTACGTGTGCATAATTATG---TAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCCGCGAACGTTGA-TTT---A---A-A-C-AAAA-ATA--T--TTGCATTTTATTAAT---TTTGTAAT---TGTTTTAACGGACAATAGTATA--AC------------ACAGTTAATAT----------TATATATCAAGGCACTCTTATACTTTTATGGCA
gi|8 : GCGTAGCGTCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGCTTCCGAGGAGCCTCCGATGCCGGTCCCGACTTGCTGCTGCAGAT----TACAGCTGGCGTAATATGTACGTGTGCA----TATG---AAT--AAAACACTGTCAGTAAA-----------TTTT-----CTCTGCGAACGTTGA-TTT---T---A-A-C-AAAA-A-A--TCGTTGCATTTTATTAAT---TTTGTAGT---TGATTTAACGGACAATAGTATA--AC------------AAAGTTTATAT----------TATATATCAAGGCACTCTGATACTTTTATGGCAA
gi|9 : GTAGCATCTCACCACA-CC-AA-GT-CAAAATCATCTA-AAACAATTCTGTCTGATTGTGGTTTCCGAGGAGCCTCCGATGCAGGTGCCGACTTGCTACTGCAGAT----TACAGCTGGCATAATATGTACATGTGCA----TATG---AAT--AAAACATTGTAAGTAAA-----------TTTT-----CTCTGCGAATGTTGA-TTT---T---A-A-C-AAAA-A-A--TCATTGCATTTTATTAAT---ATTGTAGT---TGGTTTAACGAACAATAGTATA--AC------------AAAGTTAATAT----------TATACATCAAGGCACTCTGATACTTTTATGACAA