lowQualScore : 1 888888888 3333333 1 1 4 8888 1 44444444444 22222222222222 1111 1 33 55555555 1 1 4444444 1 22 2 2222 4 222222 1 1 1 11 1 222222 1 1 777777777777777777777777777777777777 111 11111111111 1111111111 33333333
lowQualScore : 6 0 6 6 2 3 3 5 2 999999999 2222222 5 2 5 2 0 5555 8 6 6 2 5 1 66 88888888888 5 44444444444444 5 5 0000 0 5 5 5 1 5555 66 0 7 22 5 3 0 7 99 2 66666666 5 5 2 2 4444444 6 7 3 7 6 00 7 8 3 1111 0 666666 0 0 0 88 0 9999 555 777777 6 2 9 3 4 4 8 000000000000000000000000000000000000 333 0 111 3 55555555555 4444444444 44444444 8 33
lowQualScore : . . . . . . . . . ......... ....... . . . . . .... . . . . . . .. ........... . .............. . . .... . . . . . .... .. . . .. . . . . .. . ........ . . . . ....... . . . . . .. . . . .... . ...... . . . .. . .... ... ...... . . . . . . . .................................... ... . ... . ........... .......... ........ . ..
lowQualScore : 0 2 0 0 2 2 2 0 0 000000000 8888888 0 5 0 5 0 0000 8 0 0 5 0 0 11 66666666666 0 33333333333333 0 0 6666 2 0 0 0 5 9999 44 2 1 88 0 9 6 0 22 5 88888888 0 0 0 5 8888888 0 0 7 3 0 00 3 3 7 2222 0 888888 0 0 0 33 9 7777 444 444444 2 5 2 5 3 0 9 444444444444444444444444444444444444 888 2 777 3 88888888888 6666666666 44444444 8 00
consensus : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTT--TTT-TT-TTGTTTTTAT----AA-TGATAAATGCATAAATTTCTTTATAGGCATGTANATCTAGTCTATGATATTGTTGAANCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-GT-TTC-GAATNTTC---GTNG-G-GTTACTTAA-A-C----AGTCTATATCAA-AG-A-AAACGCCA-TTCTTTTTGCACTGTTCTGACCCTTTTG-TTTAGAAAGGTCACATCGTCTCCCTGTCATAGTTGTTAATAGTTAGACAATG--G----TAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACCAAGATCATAAAGTNCGCCATATACCGTTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAA---GTTAT----ACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACAT-TAAGAAAAAA-A-N---------N-----------T-T-ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTCACAGACAAAAACCATA
Reference ( gi|1 ) : CTAATTGTGTGAAAGGGGAAAAGCTGCTTACTATGTCAATAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGATGATGAAAGGTACTGTCGTGAATATTTGTTG-TTTTTTGTTGTTTTTAT----TA-TGATAAATGCATAAATGTCTTTATAGGCATGTAGATCTAGTCTATGAGATTGTTGAACCCTTATAAAAAGGTCA----TAGTCCAAGACTGGCTGTACATTTGTCTCATTACATGGATATGTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTTGGGATTCTACACCAAATACTACATCTTGAATATCAAGTT-AG-GTATTT-GAATTTTC---GTAA-G-GTCACTTAA-A-C----AGTCTATATCAA-AG-A-AAATGCCA-TTCTTTTTGCACTGCTCTGACCCTTTTG-CTTAGAAAGGTCACATTGTCTCCCAGTCTAAGTTGTTAATAATTAGACAATC--T----TAACCGGTCGATGAGTCGAAACATATAGCTCAAACT-AATCATTTTTAAAGACCAAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGATGGC-ATTGTTTTGACCTAAATGAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTT-TAATAACCATTGCA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAA---GTTTC----ACGATAACTGTACAAACCA-ATGTGGTTCAGTTTGTTCTTACAT-AAAGAAAAAACA-A---------A-----------T-T-ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTCACAAACAAAAACCATA
gi|3 : CCAATTGTGTGAAAGAGGAAAAGCTGCCTGCTATGCCAACAAAGATGCTTCAAAGGTTCATACTGCTGCAAAAGACGATGATGAAAGGTACTGTAGTAAATATTTGTT--TTT----TTGTTTTTAT----AA-TGATAAATGCATAAATTTCTTTATAGGCATGTATATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATATCT
gi|6 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacCCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTAATACTGCTGCCAAAGACGACAATGAAAGGTACTGTAGTAAATATTTGTTGTTTTTTTTTTGTTTTTATACTGTATTGATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTAAAGCCTTAT-AAAAGGTCATAATTAGTCCAAAACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTTTGTCtgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctgtcttagggattctacaccaaatactacaccttgaatatcaagttgaattttccttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctttctattttgcttggaatggtcaaattgtctccctgtcatagttgttaataattagaaaatggtaatcggtctatcagtcaaaacatatagctgtaattgaatcattttcag
gi|8 : gaaggcgatttgcaatatggccaatgccaaatcatgtttaaatatatgtttttatttaagtgcaaaccaaataagtgtcaaattatgtacaacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttttactttgttatttctttgtatttctcctcttattaatacgttaatggaagacccggttacCCAGTTGTGTGAAAGTGAAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTT--------------TTTAT----AA-TGATAAATGCATAAATTTATTTATAGGCATGAAGATCTAGTCTATGATATTGTTGAAGCCTTAT-AAAAGGTGATAATTAGTACAAGACTTGCTGTGTATTTGTCTCGTTACGT-GATGTTTCTATGTCT
gi|7 : tgttttgactgaagttcaaatcaaataagtgtcaaattctgtacaacgtacatgatacagtagcggttttgcctacgagctcgtgaggaaaagtttgattttccagcttttactttgttttttctttgtatttctcctcttattaatacgttaagggaagacccggttatATTGTGTGAAAGGGGAAAAGCTTCCTGCTATGTCAATAAAG-----------GTTCATACTGCTGCCAAAGATGATGA-----GGTACTGTAGTGAATATTTGTT------TT-TTGTTTTTAT----AA-TGATGAATGCATCAATTTCTTTATAGGCATGTATATCTAGTCGATGGTATTGTTGAACCCTTAT-AAAAGGTCATAGTTAGTCCAAGACTGGCTGTATATTTGTCTCGTTACAAGGATATTTCTATGTC
gi|2 : aggcgatttggaatatggccaatgccaaatcatgtttaaatatatgttttgatttaagtacaaatcaaataagtgcattagaaatactgtacgacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttcttctttgttatttctttgtatttctcctcttattatgcgttaatggaagaccaggttaccctGTCTCTGGGATCCTACACCAAATACTACACCTTGAATATCAAGTT-AG-GTATTT-GAATTTTC---GTAG-G-GTTACTAAA-A-C----AGTCTATATCAA-AG-A-AAACGCCA-TTCTTTTTGCACTGTTCTGACACTTTTA-CTTAGAAAGGTCACATCATCTCCCTGTCATAGTTGTTAATAGTAAGACAATTAGTTAGGTAACCGGTCTATCAGTCGAAACATATAGCTCTAATTGAATCATTTTCAATGACCAAGATCATAAAGTTCGCC--ATACCATTTCATTGTGATGACGG--ATTGTTTTGACCTAAATAAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAAACATTGGA----TT-TT-TTCAATTTCACAGTATAAAGCT-ATTTTTGT--GTTAT
gi|3 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCTTAGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTC---CTTG-G-GTTACTTAA-A-C----AGTCTATATCAA-AG-A-AAACGCCA-TTCTTTTTGTACTGTTCTTTCTATTTTG-CTTGGAATGGTCAAATTGTCTCCCTGTCATAGTTGTTAATAATTAGAAAATG--G----TAATCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgtatcaaatatcggtaagttatatacaaaccaatgtgttttagtatgttctaatattaagaaaaaaaatactagcaaggaaagtttgctctttaaattcacagacagaaaccata
gi|4 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacccaattgtgtgaaagaggaaaagctgcctgctatgccaacaaagatgcttcaaaggttcatactgctgcaaaagacgatgatgaaaggtactgtagtaaatatttgtttttttgtttttataatgataaatgcataaatttctttataggcatgtatatctagtctatgatattgttgaacccttataaaaggtcataattagtccaagacttgctgtatatttgtctcgttacatggatgtttctatatcttgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTC---GTTG-G-GTTACTTAA-A-C----AGTCTATATCAA-AG-A-AAACGCCA-TTCTTTTTGTACTGTTCTGACCCTTTTG-CTTAGAAAGGTCACATTGTCTCCCTGTC----------ATAGTTA-ACAATG--G----TAACCGGTCTATCAGTCAAAA-ATATAGCTGTAATTGAATCATTTTCAATGACCAAGATCATAAAGTACGCCATATACCGTTTCATTGTGATGACGGCTTTTTTTTTTACCTTAATGAATATGTA-ATTCACT-AAGTTGTTATACAAAGTATAGTAGATCTATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TTATTCAGTTTCACAATATAAAGCTAATTTATTG--GTAATg
gi|20 : AAATCCTACACCTTGAATATCAAGTT-AG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagttatacaataactgtacaaaccaatttgtttcagtttgttctaacattaataaaaaaacatttactagcaagaaaagtttgctctttaaattcagtcaaaaaccat
gi|21 : ATACTTC-CCATGAATGTCAAGTTGAA-GT-TTC-GA---TTG---GTAGCG-GTT--TTAA-AAC----TGTTAATATCAT-AC-ACAAACAGCA-TTCCTTTTGCAATGTTCTGAAC--TCTG-TTT-GAATGTTCACATagtttctaatgatcactgagtttcttaacgattgtcatcaaacaaacacagcaatttaacacttttgaacatattaaccatgttgttttgacagct
gi|22 : TACTATGCCTTGCATACCAAGTT-TG-A-ATCTCGAATGTTC---ATGG-C-ATTTCTTAA-A-A----AGTCTGTATCAA-AGAA-AAATGATAGCTTTTTTTGCGCTGTTCTGATTCATTTA-TTTga
gi|10 : cttTACTACACCTTGTATATCAAGTT-AGTGT-TTC-AAATGTTC---A-AA-GTGTTTCTTAAGA-CTGTGGGTGTCCATCAACAG-C-A----CC--TTC-TTTTGCATTGTTCTGACCGTTTTG-TTTAAATAGtta
gi|11 : tTATTATGTT-AA-GTGTTCCGAATATTCCGGGCGA-G----AC-----G-C----AGTCGATATCAA-AG-A-AAATAGCA-TA--TTTTGCAATGTTCTGAAACTTTAG-TTTTGAAGGTTCACATctgacgcatcacaaagacctgccctattcatcacaaaattttgtaatcactagccaattgaaactgacctgtcagtatgtacagttcaatatttccagacctaag
gi|24 : tacgtcataccCTTAA-A-C----AATCGATATCAA-AG-A-AAATG------------GCGTAGATCTGGCCCCTTTGTTTTAGAaccataaggcctcacctgacatctgactgtaagcgattagcaaatgaaaatcgctatatcaatta
gi|5 : catatcaagttcgagctgcgttcGAAAGGTCACATTGTCTCCCTGTCATAGTTGTTAATAATTAGACAAGG--G----TAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACCAAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACAGC-ATTGTTTTGACGTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTTTACTGGCTTATAATAACTATTGGAATTTTT-TT-TTCAATTTCACAATATATAGCT-ATTtg
gi|9 : GTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTTGTT-TTCAATTTTACAATATAAAGCT-ATTTTTTTGGGTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaatttatatcaaataccggtaaattatacaataactgtacaaaccaacgtgtttcagtttgttctaacctgaagaaaaaaatataagcaaggaaagtttgctctttaaattcagtcaaaaaccata
gi|4 : TTTG-TATCAAATACCGGTAA---GTTAT----ACAATAACTGTACAAACCA-ATTTGTTTCAGTTTGTTCTAACAT-TAATAAAAAAAC-A---------T-----------T-T-ACTA---GCAAGAAAAG-TTTGCTCTT-----------TA----------AA--------TT--CAGTCAAAAACCATtttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatattttatatcaaataccgatatgttatacaataactgtacaaaacaatgtgtttcagtttgttctaacataaagaaaaaaaacatttactagcaaggaatgtttgctctttaaattcagtcaaagaccatat
gi|5 : tctctgggattctacaccaaatactacaccttgaatatcaagttgaattttcgttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctgacccttttgcttagaaaggtcacattgtctccctgtcatagttaacaatggtaaccggtctatcagtcaaaaatatagctgtaattgaatcattttcaatgaccaagatcataaagtacgccatataccgtttcattgtgatgacggcttttttttttaccttaatgaatatgtaattcactaagttgttatacaaagtatagtagatctatagtttaacaatgctgtactggcttataataaccattggatttttattcagtttcacaatataaagctaatttattggtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTA-TATCAAATACCGGTAA---ATTAT----ACAATAACTGTACAAACCA-ACGTGTTTCAGTTTGTTCTAACCT-GAAGAAAA---A-A---------A-----------TAT-A--A---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TT--CAGTCAAAAACCATA
gi|9 : gaaaggtcacattgtctccctgtcatagttgttaataattagacaagggtaaccggtctatcagtcaaaacatatagctgtaattgaatcattttcaatgaccaagatcataaagtgcgccatataccatttcattgtgatgacagcattgttttgacgtaaatgaatatggatattcactaagttgttatacaaagtatagtagatagtttaacaatgctttactggcttataataactattggaatttttttttcaatttcacaatatatagctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaaTTTA-TATCAAATACCGATAT---GTTAT----ACAATAACTGTACAAAACA-ATGTGTTTCAGTTTGTTCTAACAT-AAAGAAAAAAAA-C---------AT----------T-T-ACTA---GCAAGGAATG-TTTGCTCTT-----------TA----------AA--------TT--CAGTCAAAGACCATA
gi|19 : gtatagtagatagtttaacaatgctgtactggcttataataaccattggatttgttttcaattttacaatataaagctatttttttgggtaattttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatatTTAG-TATCAAATACCGTTGA---GTTGT----ACAATAACTGTACACACCA-ATGTGTTTCAGTTTGTTCTAACAT-TAAAAAAA--------------------------------------------AAAG-TTTGCTTTT-----------TA----------AA--------TTCACGGACAAAATACATAt
gi|18 : ttttaaatatattatgttaTTAG-TATCA--TA----TAA---GTTAT----ACAATGATTGTACATACCA-AAGTGTTTCAGTTTGTACTAACAT-TAAAAAAAG----------------------------T-ATTA---ACAAGGAAAG-TTTGCTCTT-----------TATTCTGTTTGTAAAAAAGATCTTCACAAACAAAAA
gi|17 : tgttaTTTG-TATCAAATACTGGTAATGTATTTC----A-----------------A-ATGTGTTTCATTTTGTATTAACAT-TTA--------A-A---------ACTTTTTTTTTTT-T-ACTA---GCAAGGAAAG-TTTGCTCTTGAATCTGTTTGTG----------AAAAAGATC-TTCACAAACAAAAAa
gi|2 : tgttaTTG-TATCAAATATCGGTAA---GTT---------ATA----TACAAACCA-ATGTGTTTTAGTATGTTCTAATAT-TAAGAAAAAA---A---------A-----------T---ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTCACAGACAGAAACCATA
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctctgggatcctacaccaaatactacaccttgaatatcaagttaggtatttgaattttcgtagggttactaaaacagtctatatcaaagaaaacgccattctttttgcactgttctgacacttttacttagaaaggtcacatcatctccctgtcatagttgttaatagtaagacaattagttaggtaaccggtctatcagtcgaaacatatagctctaattgaatcattttcaatgaccaagatcataaagttcgccataccatttcattgtgatgacggattgttttgacctaaataaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggcttataataaacattggattttttcaatttcacagtataaagctatttttgtgttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaTTGATATCAAATA------A---GTTAT----ACAATGACTATACATACCATAT-TGTTTCATTATGTACTAACTTTAAAAAAAAAATA-T---------T-----------T-T-TCTATTTACAAGGAAAG-TTTGCTCTT-----------TA----------
gi|14 : aaTTGATATCAAATA------A---GTTAT----ACAATGACTATATACGCCATAT-TGTTTCATTATGTACTAACAT-TCA--AAAAATA-T---------T-----------T-T-TCTATTTACAAGGAAAGATTTGCTCTT-----------TA----------Attatgtttgtgaaaaagaaaaaaatcttcacaaacaaaaac
gi|15 : taTTGATATCAAATA------A---GTTAT----ACAATGACTATATATACTATAT-TGTTTCATTTTGTACT--------------AACA-ATTTTTTTTTA-----------T-TTATTT---ACAAGGAAAG-TTTGCTCTT-----------TA----------tctgttttgtgaaaaagaaaaaaatcttcacaaacaaaa
gi|16 : tgttaG-TATCAAATACCGATAA---GTTAT----ACAATAACTGTACAAACCA-ATGTGTTTCAGTTTGTTCTAACAT-TAA-AAAAAATGTT---------T-----------T-T-ACTA---GCAAGGAAAG-TTTGCTGTT-----------TA----------AA--------TTCACAGACAAAAACCAgtctgtgaaaaagaaaaaaacctcacaaacaagaac
gi|13 : catattttgttatgaATCAAATATCGATAA---GTTACCGATACGATGATTGTACAAACCA-ATGTTTTTTAGTCTGTACTAGCAT-TCAACAATATCG-T---------T-----------T-T-ATTA---ACAAGGAAAG-TTTAATCTT-----------TA----------A
gi|25 : gttattagaATCAAATACGGGTAA---TTTAT----ACAATGACTGTACAAACCA-ATGTTATTCAGTtctgtttgcgaaaaatatcttcacaaacaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): TTGAAGGCGATTGGGAATATGGCCAATGCCAAATTATGTTTAAATATATGTTTTGATTTAAGTGCAGCGATTTGGAATATGGCCAATGCCAAATTATGTTTAAATATATG
Unaligned ( gi|26 ): ACTACACTTTGTATATTGAGTTAATGTTTCAAATATTCGCAGTGTTTATAAAATTTCGGG
Unaligned ( gi|27 ): TGGATTGACAGTCAGACCTACTGTTAATAACTGAGCTGGCCAGGCCTGGGCCTGCT
Unaligned ( gi|28 ): CTTTAGTAATTTTCTTAACTTTAAGTGTTTTATTTA
Alignments
lowQualScore : 44444444444 1111 33333333 33333333 11111111 111111 11 2 1111 1111 11 1 11111111 444444444444444444444444 11111111111 33333333333333333333333333333
lowQualScore : 0 0 0 99999999999 7777 8 1 1 8 0 0 22222222 3 111 44 6 99 4 5 4 4 4 4 4 2 4 99999 4 2 4 3 66 77777777 5 5 5 66666666 0 5 5 666666 1 2 2 11 8 1 3 2 22 3 4 0 7777 0 4444 8 8 8 33 0 66 2 6666 0 8 2 1 11111111 3 8 000000000000000000000000 0 555 3 44444444444 00000000000000000000000000000
lowQualScore : . . . ........... .... . . . . . . ........ . ... .. . .. . . . . . . . . . ..... . . . . .. ........ . . . ........ . . . ...... . . . .. . . . . .. . . . .... . .... . . . .. . .. . .... . . . . ........ . . ........................ . ... . ........... .............................
lowQualScore : 8 8 8 00000000000 0000 0 0 0 0 8 6 22222222 5 888 22 1 55 0 7 0 0 0 0 0 5 0 22222 0 5 0 9 99 00000000 7 7 7 99999999 7 7 0 444444 0 5 5 88 0 0 2 0 55 2 0 0 0000 8 8888 0 0 0 88 0 66 4 1111 4 6 5 0 22222222 1 4 222222222222222222222222 7 444 1 66666666666 00000000000000000000000000000
consensus : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTG---TTTTT--TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--A-CAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A-A--NTT-----T---------ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
Reference ( family-3875 ) : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTT----TTTTT--TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTANATCTAGTCTATGATATTGTTGAANCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTACTTAA--A-CAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAGTTAGACAAT------GGTAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTNCGCCATATACCGTTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A-A--NNT-----T---------ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
gi|1 : CTAATTGTGTGAAAGGGGAAAAGCTGCTTACTATGTCAATAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGATGATGAAAGGTACTGTCGTGAATATTTGTTG---TTTTTTGTTGTTTTTATT----AT-GATAAATGCATAAATGTCTTTATAGGCATGTAGATCTAGTCTATGAGATTGTTGAACCCTTATAAAAAGGTCA----TAGTCCAAGACTGGCTGTACATTTGTCTCATTACATGGATATGTCTATGTCT
gi|1 : GTCTTTGGGATTCTACACCAAATACTACATCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAA-GGTCACTTAA--A-CAGTCTATATCAAAG-A-A-A-AT-GCCA-TTC----TTTTTGCAC-TGCTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCAG-TCT--A-----AGTTGT-TAATAATTAGACAAT------CTTAACCGGTCGATGAGTCGAAACATATAGCTCAAACT-AATCATTTTTAAAGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGATGGC-ATTGTTTTGACCTAAATGAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTT-TAATAACCATTGCA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|1 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTG-TATCAAATACCGGTAAGTTT----CACGATAACTGTACAAACCA-ATGTGGTTCAGTTTGTTCTTACA--------TA-AAGAAAAA-ACA--AAT-----T---------ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAAACAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|10 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACTACACCTTGTATATCAAGTT-AGTG-T-TTCAAATGTTCAAAG-TGTTTCTTAAG-A-CTGTGGGTGTCCATC-A-ACA-GC-ACC--TTC----TTTT-GCAT-TGTTCTGACCGTTTTG-TTTAAATAGCTGACGCAT-CACAAAGACCTGC-CCTATTCA--TCACAAAATTTTGTAATCACTAGCCAAT------TGAAACTGACCTGTCAGT----ATGTACAG------TTCAAT-ATTTCCA--GACCTAAG
gi|11 : tATGTTAAGT-----G-T-TCCGAATATTC--CG-GGCGAG--AC--G-CAGTCGATATCAAAG-A-A-A-AT-AGCA-TA------TTTTGCAA-TGTTCTGAAACTTTAG-TTTTGAAGGTT--CACATACCATAAGGCCT-CACCTG-ACATCT-----GACTGT-AAGCGATTAGCAAAT------GAAAATCGCTATATCAATTA
gi|12 : tacgtcatacctattTTGATATCAAATA------AGTTA----TACAATGACTATACATACCATAT-TGTTTCATTATGTACTAACT--------TT-AAAAAAAA-A-A--TATTTTTCT---------ATTT---ACAAGGAAAG-TTTGCTCTT-----------TA----------
gi|13 : aaATCAAATATCGATAAGTTACCGATACGATGATTGTACAAACCA-ATGTTTTTTAGTCTGTACTAGCA--------TTCAACAATAT-C-G--TTT-----T---------ATTA---ACAAGGAAAG-TTTAATCTT-----------TA----------Attatgtttgtgaaaaagaaaaaaatcttcacaaacaaaaac
gi|14 : gttattagaTTGATATCAAATA------AGTTA----TACAATGACTATATACGCCATAT-TGTTTCATTATGTACTAACA--------TT-CA-AAAAA-T-A--TTT-----T---------TCTATTTACAAGGAAAGATTTGCTCTT-----------TA----------Atctgtttgcgaaaaatatcttcacaaacaa
gi|15 : taTTGATATCAAATA------AGTTA----TACAATGACTATATATACTATAT-TGTTTCATTTTGTACTAACAATTTTTTTTT-A--------------TT-----T---------ATTT---ACAAGGAAAG-TTTGCTCTT-----------TA----------G----------TCTGTGAAAAAGAAAAAAACCtctgttttgtgaaaaagaaaaaaatcttcacaaacaaaa
gi|16 : tgttaG-TATCAAATACCGATAAGTTA----TACAATAACTGTACAAACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAAATG-T--TTT-----T---------ACTA---GCAAGGAAAG-TTTGCTGTT-----------TA----------AA--------TTC------ACAGACAAAAACCAtcacaaacaagaac
gi|17 : catattttgttatgaTTTG-TATCAAATACTGGTAATGTA----T----------TTCAAA-----TGTGTTTCATTTTGTATTAACA--------TT-TA-----A-A-A--CTT-----TTTTTTTTTTACTA---GCAAGGAAAG-TTTGCTCTTGAATCTGTTTGTG----------AAAAAGATC-TTC------ACAAACAAAAA
gi|18 : tgttaTTAG-TATCA--TA----TAAGTTA----TACAATGATTGTACATACCA-AAGTGTTTCAGTTTGTACTAACA--------TT-AAAAAAAG--------------T---------ATTA---ACAAGGAAAG-TTTGCTCTT-----------TATTCTGTTTGTAAAAAAGATCTTC------ACAAACAAAAA
gi|19 : tgttaTTAG-TATCAAATACCGTTGAGTTG----TACAATAACTGTACACACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAA--------------------------------------AAAG-TTTGCTTTT-----------TA----------AA--------TTC------ACGGACAAAATACATAa
gi|2 : ttttaaatatattatgttaGTCTCTGGGATCCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAG-GGTTACTAAA--A-CAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACACTTTTA-CTTAGAAAGGT--CACAT-C------ATCT-C-CCTG-TCA--T-----AGTTGT-TAATAGTAAGACAATTAGTTAGGTAACCGGTCTATCAGTCGAAACATATAGCTCTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTTCGCC--ATACCATTTCATTGTGATGACGG--ATTGTTTTGACCTAAATAAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAAACATTGGA----TT-TT-TTCAATTTCACAGTATAAAGCT-ATTTTTGT--GTTAT
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTG-TATCAAATATCGGTAAGTTA----TA---------TACAAACCA-ATGTGTTTTAGTATGTTCTAATA--------TT-AAGAAAAA-A-A--A-------T---------ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAGAAACCATAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgtatcaaatatcggtaagttatatacaaaccaatgtgttttagtatgttctaatattaagaaaaaaaatactagcaaggaaagtttgctctttaaattcacagacagaaaccata
gi|20 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctctgggatcctacaccaaatactacaccttgaatatcaagttaggtatttgaattttcgtagggttactaaaacagtctatatcaaagaaaacgccattctttttgcactgttctgacacttttacttagaaaggtcacatcatctccctgtcatagttgttaatagtaagacaattagttaggtaaccggtctatcagtcgaaacatatagctctaattgaatcattttcaatgaccaagatcataaagttcgccataccatttcattgtgatgacggattgttttgacctaaataaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggcttataataaacattggattttttcaatttcacagtataaagctatttttgtgttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaAAATCCTACACCTTGAATATCAAGTT-AGAG-T-TTCTAATGATCACTG-AGTTTCTTAACGA-TTGTC---ATCAAAC-A-A-ACACAGCAA-TTTAACACTTTTGAACATAT--TAACCATGTTG-TTTTGACAG
gi|21 : ATACTTC-CCATGAATGTCAAGTTGAA-G-T-TTCGA---TTGGTAGCGGTT--TTAA--AACTGTTAATATCATAC-ACA-A-AC-AGCA-TTC----CTTTTGCAA-TGTTCTGAAC--TCTG-TTT-GAATGTT--CACAT-ct
gi|22 : TACTATGCCTTGCATACCAAGTT-TG-AAT-CTCGAATGTTCATGG-CATTTCTTAA--A-AAGTCTGTATCAAAGAA-A-A-AT-GATAGCTT----TTTTTGCGC-TGTTCTGATTCATTTA-TTTga
gi|24 : cttATATCAAGTT----------CGA------GCTG-CGTTCCTTAA--A-CAATCGATATCAAAG-A-A-A-AT-G----------------GCGT-AGATCTGGCCCCTTTGTTTTAGAtta
gi|25 : cATCAAATACGGGTAATTTA----TACAATGACTGTACAAACCA-ATGTTATTCAGTtg
gi|26 : tttaatattgttattagaACTACACTTTGTATATTGAGTT-AATG-T-TTCAAATATTCGCAG-TGTT
gi|3 : CCAATTGTGTGAAAGAGGAAAAGCTGCCTGCTATGCCAACAAAGATGCTTCAAAGGTTCATACTGCTGCAAAAGACGATGATGAAAGGTACTGTAGTAAATATTTGTT----TT--T--TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTATATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATATCTtataaaatttcggg
gi|3 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacGTCTTAGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCCTTG-GGTTACTTAA--A-CAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTTTCTATTTTG-CTTGGAATGGT--CAAAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGAAAAT------GGTAATCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAtgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctgtcttagggattctacaccaaatactacaccttgaatatcaagttgaattttccttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctttctattttgcttggaatggtcaaattgtctccctgtcatagttgttaataattagaaaatggtaatcggtctatcagtcaaaacatatagctgtaattgaatcattttcag
gi|4 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacccaattgtgtgaaagaggaaaagctgcctgctatgccaacaaagatgcttcaaaggttcatactgctgcaaaagacgatgatgaaaggtactgtagtaaatatttgtttttttgtttttataatgataaatgcataaatttctttataggcatgtatatctagtctatgatattgttgaacccttataaaaggtcataattagtccaagacttgctgtatatttgtctcgttacatggatgtttctatatcttgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCGTTG-GGTTACTTAA--A-CAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTT------------AACAAT------GGTAACCGGTCTATCAGTCAAAA-ATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTACGCCATATACCGTTTCATTGTGATGACGGCTTTTTTTTTTACCTTAATGAATATGTA-ATTCACT-AAGTTGTTATACAAAGTATAGTAGATCTATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TTATTCAGTTTCACAATATAAAGCTAATTTATTG--GTAATg
gi|4 : TTTG-TATCAAATACCGGTAAGTTA----TACAATAACTGTACAAACCA-ATTTGTTTCAGTTTGTTCTAACA--------TT-AATAAAAA-A-AC-ATT-----T---------ACTA---GCAAGAAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagttatacaataactgtacaaaccaatttgtttcagtttgttctaacattaataaaaaaacatttactagcaagaaaagtttgctctttaaattcagtcaaaaaccat
gi|5 : tctctgggattctacaccaaatactacaccttgaatatcaagttgaattttcgttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctgacccttttgcttagaaaggtcacattgtctccctgtcatagttaacaatggtaaccggtctatcagtcaaaaatatagctgtaattgaatcattttcaatgaccaagatcataaagtacgccatataccgtttcattgtgatgacggcttttttttttaccttaatgaatatgtaattcactaagttgttatacaaagtatagtagatctatagtttaacaatgctgtactggcttataataaccattggatttttattcagtttcacaatataaagctaatttattggtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAG------GGTAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACAGC-ATTGTTTTGACGTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTTTACTGGCTTATAATAACTATTGGAATTTTT-TT-TTCAATTTCACAATATATAGCT-ATT
gi|5 : TTTA-TATCAAATACCGGTAAATTA----TACAATAACTGTACAAACCA-ACGTGTTTCAGTTTGTTCTAACC--------TG-AAGAAAAA-A-A--TA------T---------A--A---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaatttatatcaaataccggtaaattatacaataactgtacaaaccaacgtgtttcagtttgttctaacctgaagaaaaaaatataagcaaggaaagtttgctctttaaattcagtcaaaaaccata
gi|6 : gaaaggtcacattgtctccctgtcatagttgttaataattagacaagggtaaccggtctatcagtcaaaacatatagctgtaattgaatcattttcaatgaccaagatcataaagtgcgccatataccatttcattgtgatgacagcattgttttgacgtaaatgaatatggatattcactaagttgttatacaaagtatagtagatagtttaacaatgctttactggcttataataactattggaatttttttttcaatttcacaatatatagctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaaCCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTAATACTGCTGCCAAAGACGACAATGAAAGGTACTGTAGTAAATATTTGTTGTTTTTTTT--TTGTTTTTATACTGTATTGATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTAAAGCCTTAT-AAAAGGTCATAATTAGTCCAAAACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTTTGTC
gi|7 : gaaggcgatttgcaatatggccaatgccaaatcatgtttaaatatatgtttttatttaagtgcaaaccaaataagtgtcaaattatgtacaacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttttactttgttatttctttgtatttctcctcttattaatacgttaatggaagacccggttacCCTATTGTGTGAAAGGGGAAAAGCTTCCTGCTATGTCAATAAAG-----------GTTCATACTGCTGCCAAAGATGATGA-----GGTACTGTAGTGAATATTTGTT----TT-----TTGTTTTTATA----AT-GATGAATGCATCAATTTCTTTATAGGCATGTATATCTAGTCGATGGTATTGTTGAACCCTTAT-AAAAGGTCATAGTTAGTCCAAGACTGGCTGTATATTTGTCTCGTTACAAGGATATTTCTATGTC
gi|8 : aggcgatttggaatatggccaatgccaaatcatgtttaaatatatgttttgatttaagtacaaatcaaataagtgcattagaaatactgtacgacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttcttctttgttatttctttgtatttctcctcttattatgcgttaatggaagaccaggttacCCAGTTGTGTGAAAGTGAAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTG----------------TTTTTATA----AT-GATAAATGCATAAATTTATTTATAGGCATGAAGATCTAGTCTATGATATTGTTGAAGCCTTAT-AAAAGGTGATAATTAGTACAAGACTTGCTGTGTATTTGTCTCGTTACGT-GATGTTTCTATGTCT
gi|9 : tgttttgactgaagttcaaatcaaataagtgtcaaattctgtacaacgtacatgatacagtagcggttttgcctacgagctcgtgaggaaaagtttgattttccagcttttactttgttttttctttgtatttctcctcttattaatacgttaagggaagacccggttatGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTTGTT-TTCAATTTTACAATATAAAGCT-ATTTTTTTGGGTAAT
gi|9 : TTTA-TATCAAATACCGATATGTTA----TACAATAACTGTACAAAACA-ATGTGTTTCAGTTTGTTCTAACA--------TA-AAGAAAAA-A-AACATT-----T---------ACTA---GCAAGGAATG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAGACCATAtttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatattttatatcaaataccgatatgttatacaataactgtacaaaacaatgtgtttcagtttgttctaacataaagaaaaaaaacatttactagcaaggaatgtttgctctttaaattcagtcaaagaccatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTGAAGGCGATTGGGAATATGGCCAATGCCAAATTATGTTTAAATATATGTTTTGATTTAAGTGCAGCGATTTGGAATATGGCCAATGCCAAATTATGTTTAAATATATG
Unaligned ( gi|27 ): TGGATTGACAGTCAGACCTACTGTTAATAACTGAGCTGGCCAGGCCTGGGCCTGCT
Unaligned ( gi|28 ): CTTTAGTAATTTTCTTAACTTTAAGTGTTTTATTTA
Alignments
lowQualScore : 3333333333333 1111 33333333 33333333 11111111 111111 11 1 1111 1111 11 1 11111111 444444444444444 111 11111111111 33333333333333333333333333333
lowQualScore : 0 0 0 4444444444444 7777 8 8 0 0 22222222 3 111 44 1 0 88 5 4 4 4 4 4 2 4 99999 4 2 4 3 66 77777777 5 5 5 66666666 0 5 666666 2 1 2 2 11 8 0 3 22 3 1 5 7777 0 4444 8 8 8 33 0 66 2 6666 0 8 2 1 11111111 3 6 000000000000000 0 000 3 44444444444 00000000000000000000000000000
lowQualScore : . . . ............. .... . . . . ........ . ... .. . . .. . . . . . . . . ..... . . . . .. ........ . . . ........ . . ...... . . . . .. . . . .. . . . .... . .... . . . .. . .. . .... . . . . ........ . . ............... . ... . ........... .............................
lowQualScore : 8 8 8 6666666666666 0000 0 0 8 6 22222222 5 888 22 0 3 66 7 0 0 0 0 0 5 0 22222 0 5 0 9 99 00000000 7 7 7 99999999 7 7 444444 2 0 5 5 88 0 2 2 55 2 0 5 0000 8 8888 0 0 0 88 0 66 4 1111 4 6 5 0 22222222 1 5 444444444444444 3 888 1 66666666666 00000000000000000000000000000
consensus : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A--A---------NTTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
Reference ( family-3875 ) : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A--A---------NTTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
gi|1 : CTAATTGTGTGAAAGGGGAAAAGCTGCTTACTATGTCAATAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGATGATGAAAGGTACTGTCGTGAATATTTGTTGTTTTTTGTT---GTTTTTATT----AT-GATAAATGCATAAATGTCTTTATAGGCATGTAGATCTAGTCTATGAGATTGTTGAACCCTTATAAAAAGGTCA----TAGTCCAAGACTGGCTGTACATTTGTCTCATTACATGGATATGTCTATGTCT
gi|1 : GTCTTTGGGATTCTACACCAAATACTACATCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAA-GGTCACTTAA--ACAGTCTATATCAAAG-A-A-A-AT-GCCA-TTC----TTTTTGCAC-TGCTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCAG-TCT--A-----AGTTGT-TAATAATTAGACAAT------CTTAACCGGTCGATGAGTCGAAACATATAGCTCAAACT-AATCATTTTTAAAGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGATGGC-ATTGTTTTGACCTAAATGAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTT-TAATAACCATTGCA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|1 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTG-TATCAAATACCGGTAAGTTT----CACGATAACTGTACAAACCA-ATGTGGTTCAGTTTGTTCTTACA--------TA-AAGAAAAA-AC-A---------AATTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAAACAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|10 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACTACACCTTGTATATCAAGTT-AGTG-T-TTCAAATGTTCAAAG-TGTTTCTTAAG-ACTGTGGGTGTCCATC-A-ACA-GC-ACC--TTC----TTTT-GCAT-TGTTCTGACCGTTTTG-TTTAAATAGCTGACGCAT-CACAAAGACCTGC-CCTATTCA--TCACAAAATTTTGTAATCACTAGCCAAT------TGAAACTGACCTGTCAGT----ATGTACAG------TTCAAT-ATTTCCA--GACCTAAG
gi|11 : tATGTTAAGT-----G-T-TCCGAATATTC--CG-GGCGAG--AC--GCAGTCGATATCAAAG-A-A-A-AT-AGCA-TA------TTTTGCAA-TGTTCTGAAACTTTAG-TTTTGAAGGTT--CACATACCATAAGGCCT-CACCTG-ACATCT-----GACTGT-AAGCGATTAGCAAAT------GAAAATCGCTATATCAAT
gi|12 : tacgtcatacctattTTGATATCAAATA------AGTTA----TACAATGACTATACATACCATAT-TGTTTCATTATGTACTAACT--------TT-AAAAAAAA-AATA---------TTTTTCTATTTACAAGGAAAG-TTTGCTCTT-----------TA----------ta
gi|13 : aaATCAAATATCGATAAGTTACCGATACGATGATTGTACAAACCA-ATGTTTTTTAGTCTGTACTAGCA--------TTCAACAATAT-C--G---------TTTTATTA---ACAAGGAAAG-TTTAATCTT-----------TA----------Attatgtttgtgaaaaagaaaaaaatcttcacaaacaaaaac
gi|14 : gttattagaTTGATATCAAATA------AGTTA----TACAATGACTATATACGCCATAT-TGTTTCATTATGTACTAACA--------TT-CA-AAAAA-T--A---------TTTTTCTATTTACAAGGAAAGATTTGCTCTT-----------TA----------Atctgtttgcgaaaaatatcttcacaaacaa
gi|15 : taTTGATATCAAATA------AGTTA----TACAATGACTATATATACTATAT-TGTTTCATTTTGTACTAACAATTTTTTTTT-A----------------------TTTATTT---ACAAGGAAAG-TTTGCTCTT-----------TA----------G----------TCTGTGAAAAAGAAAAAAACCtctgttttgtgaaaaagaaaaaaatcttcacaaacaaaa
gi|16 : tgttaG-TATCAAATACCGATAAGTTA----TACAATAACTGTACAAACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAAATG--T---------TTTTACTA---GCAAGGAAAG-TTTGCTGTT-----------TA----------AA--------TTC------ACAGACAAAAACCAtcacaaacaagaac
gi|17 : catattttgttatgaTTTG-TATCAAATACTGGTAATGTA----T----------TTCAAA-----TGTGTTTCATTTTGTATTAACA--------TT------TAA-A--ACTTTTTTTTTTTTACTA---GCAAGGAAAG-TTTGCTCTTGAATCTGTTTGTG----------AAAAAGATC-TTC------ACAAACAAAAA
gi|18 : tgttaTTAG-TATCA--TA----TAAGTTA----TACAATGATTGTACATACCA-AAGTGTTTCAGTTTGTACTAACA--------TT-AAAAAAAG-----------------TATTA---ACAAGGAAAG-TTTGCTCTT-----------TATTCTGTTTGTAAAAAAGATCTTC------ACAAACAAAAA
gi|19 : tgttaTTAG-TATCAAATACCGTTGAGTTG----TACAATAACTGTACACACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAA--------------------------------AAAG-TTTGCTTTT-----------TA----------AA--------TTC------ACGGACAAAATACATAa
gi|2 : ttttaaatatattatgttaGTCTCTGGGATCCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAG-GGTTACTAAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACACTTTTA-CTTAGAAAGGT--CACAT-C------ATCT-C-CCTG-TCA--T-----AGTTGT-TAATAGTAAGACAATTAGTTAGGTAACCGGTCTATCAGTCGAAACATATAGCTCTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTTCGCC--ATACCATTTCATTGTGATGACGG--ATTGTTTTGACCTAAATAAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAAACATTGGA----TT-TT-TTCAATTTCACAGTATAAAGCT-ATTTTTGT--GTTAT
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTG-TATCAAATATCGGTAAGTTA----TA---------TACAAACCA-ATGTGTTTTAGTATGTTCTAATA--------TT-AAGAAAAA-A--A---------AT--ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAGAAACCATAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgtatcaaatatcggtaagttatatacaaaccaatgtgttttagtatgttctaatattaagaaaaaaaatactagcaaggaaagtttgctctttaaattcacagacagaaaccata
gi|20 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctctgggatcctacaccaaatactacaccttgaatatcaagttaggtatttgaattttcgtagggttactaaaacagtctatatcaaagaaaacgccattctttttgcactgttctgacacttttacttagaaaggtcacatcatctccctgtcatagttgttaatagtaagacaattagttaggtaaccggtctatcagtcgaaacatatagctctaattgaatcattttcaatgaccaagatcataaagttcgccataccatttcattgtgatgacggattgttttgacctaaataaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggcttataataaacattggattttttcaatttcacagtataaagctatttttgtgttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaAAATCCTACACCTTGAATATCAAGTT-AGAG-T-TTCTAATGATCACTG-AGTTTCTTAACGATTGTC---ATCAAAC-A-A-ACACAGCAA-TTTAACACTTTTGAACATAT--TAACCATGTTG-TTTTGACAG
gi|21 : ATACTTC-CCATGAATGTCAAGTTGAA-G-T-TTCGA---TTGGTAGCGGTTT-TAAA--ACTGTTAATATCATAC-ACA-A-AC-AGCA-TTC----CTTTTGCAA-TGTTCTGAAC--TCTG-TTT-GAATGTT--CACAT-ct
gi|22 : TACTATGCCTTGCATACCAAGTT-TG-AAT-CTCGAATGTTCATGG-CATTTCTTAA--AAAGTCTGTATCAAAGAA-A-A-AT-GATAGCTT----TTTTTGCGC-TGTTCTGATTCATTTA-TTTga
gi|24 : cttATATCAAGTT----------CGA------GCTG-CGTTCCTTAA--ACAATCGATATCAAAG-A-A-A-AT-G----------------GCGT-AGATCTGGCCCCTTTGTTTTAGAtta
gi|25 : cATCAAATACGGGTAATTTA----TACAATGACTGTACAAACCA-ATGTTATTCAGTtg
gi|26 : tttaatattgttattagaACTACACTTTGTATATTGAGTT-AATG-T-TTCAAATATTCGCAG-TGTTTATAAA--A
gi|3 : CCAATTGTGTGAAAGAGGAAAAGCTGCCTGCTATGCCAACAAAGATGCTTCAAAGGTTCATACTGCTGCAAAAGACGATGATGAAAGGTACTGTAGTAAATATTTGTT---TTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTATATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATATCTtttcggg
gi|3 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacGTCTTAGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCCTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTTTCTATTTTG-CTTGGAATGGT--CAAAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGAAAAT------GGTAATCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAtgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctgtcttagggattctacaccaaatactacaccttgaatatcaagttgaattttccttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctttctattttgcttggaatggtcaaattgtctccctgtcatagttgttaataattagaaaatggtaatcggtctatcagtcaaaacatatagctgtaattgaatcattttcag
gi|4 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacccaattgtgtgaaagaggaaaagctgcctgctatgccaacaaagatgcttcaaaggttcatactgctgcaaaagacgatgatgaaaggtactgtagtaaatatttgtttttttgtttttataatgataaatgcataaatttctttataggcatgtatatctagtctatgatattgttgaacccttataaaaggtcataattagtccaagacttgctgtatatttgtctcgttacatggatgtttctatatcttgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCGTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTT------------AACAAT------GGTAACCGGTCTATCAGTCAAAA-ATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTACGCCATATACCGTTTCATTGTGATGACGGCTTTTTTTTTTACCTTAATGAATATGTA-ATTCACT-AAGTTGTTATACAAAGTATAGTAGATCTATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TTATTCAGTTTCACAATATAAAGCTAATTTATTG--GTAATg
gi|4 : TTTG-TATCAAATACCGGTAAGTTA----TACAATAACTGTACAAACCA-ATTTGTTTCAGTTTGTTCTAACA--------TT-AATAAAAA-A--AC--------ATTTACTA---GCAAGAAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagttatacaataactgtacaaaccaatttgtttcagtttgttctaacattaataaaaaaacatttactagcaagaaaagtttgctctttaaattcagtcaaaaaccat
gi|5 : tctctgggattctacaccaaatactacaccttgaatatcaagttgaattttcgttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctgacccttttgcttagaaaggtcacattgtctccctgtcatagttaacaatggtaaccggtctatcagtcaaaaatatagctgtaattgaatcattttcaatgaccaagatcataaagtacgccatataccgtttcattgtgatgacggcttttttttttaccttaatgaatatgtaattcactaagttgttatacaaagtatagtagatctatagtttaacaatgctgtactggcttataataaccattggatttttattcagtttcacaatataaagctaatttattggtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAG------GGTAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACAGC-ATTGTTTTGACGTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTTTACTGGCTTATAATAACTATTGGAATTTTT-TT-TTCAATTTCACAATATATAGCT-ATT
gi|5 : TTTA-TATCAAATACCGGTAAATTA----TACAATAACTGTACAAACCA-ACGTGTTTCAGTTTGTTCTAACC--------TG-AAGAAAAA-A--A------------TATAA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaatttatatcaaataccggtaaattatacaataactgtacaaaccaacgtgtttcagtttgttctaacctgaagaaaaaaatataagcaaggaaagtttgctctttaaattcagtcaaaaaccata
gi|6 : gaaaggtcacattgtctccctgtcatagttgttaataattagacaagggtaaccggtctatcagtcaaaacatatagctgtaattgaatcattttcaatgaccaagatcataaagtgcgccatataccatttcattgtgatgacagcattgttttgacgtaaatgaatatggatattcactaagttgttatacaaagtatagtagatagtttaacaatgctttactggcttataataactattggaatttttttttcaatttcacaatatatagctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaaCCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTAATACTGCTGCCAAAGACGACAATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TTTTTGTTTTTATACTGTATTGATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTAAAGCCTTAT-AAAAGGTCATAATTAGTCCAAAACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTTTGTC
gi|7 : gaaggcgatttgcaatatggccaatgccaaatcatgtttaaatatatgtttttatttaagtgcaaaccaaataagtgtcaaattatgtacaacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttttactttgttatttctttgtatttctcctcttattaatacgttaatggaagacccggttacCCTATTGTGTGAAAGGGGAAAAGCTTCCTGCTATGTCAATAAAG-----------GTTCATACTGCTGCCAAAGATGATGA-----GGTACTGTAGTGAATATTTGTT----TT--TT---GTTTTTATA----AT-GATGAATGCATCAATTTCTTTATAGGCATGTATATCTAGTCGATGGTATTGTTGAACCCTTAT-AAAAGGTCATAGTTAGTCCAAGACTGGCTGTATATTTGTCTCGTTACAAGGATATTTCTATGTC
gi|8 : aggcgatttggaatatggccaatgccaaatcatgtttaaatatatgttttgatttaagtacaaatcaaataagtgcattagaaatactgtacgacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttcttctttgttatttctttgtatttctcctcttattatgcgttaatggaagaccaggttacCCAGTTGTGTGAAAGTGAAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTG----------------TTTTTATA----AT-GATAAATGCATAAATTTATTTATAGGCATGAAGATCTAGTCTATGATATTGTTGAAGCCTTAT-AAAAGGTGATAATTAGTACAAGACTTGCTGTGTATTTGTCTCGTTACGT-GATGTTTCTATGTCT
gi|9 : tgttttgactgaagttcaaatcaaataagtgtcaaattctgtacaacgtacatgatacagtagcggttttgcctacgagctcgtgaggaaaagtttgattttccagcttttactttgttttttctttgtatttctcctcttattaatacgttaagggaagacccggttatGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTTGTT-TTCAATTTTACAATATAAAGCT-ATTTTTTTGGGTAAT
gi|9 : TTTA-TATCAAATACCGATATGTTA----TACAATAACTGTACAAAACA-ATGTGTTTCAGTTTGTTCTAACA--------TA-AAGAAAAA-A--AAC-------ATTTACTA---GCAAGGAATG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAGACCATAtttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatattttatatcaaataccgatatgttatacaataactgtacaaaacaatgtgtttcagtttgttctaacataaagaaaaaaaacatttactagcaaggaatgtttgctctttaaattcagtcaaagaccatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTGAAGGCGATTGGGAATATGGCCAATGCCAAATTATGTTTAAATATATGTTTTGATTTAAGTGCAGCGATTTGGAATATGGCCAATGCCAAATTATGTTTAAATATATG
Unaligned ( gi|27 ): TGGATTGACAGTCAGACCTACTGTTAATAACTGAGCTGGCCAGGCCTGGGCCTGCT
Unaligned ( gi|28 ): CTTTAGTAATTTTCTTAACTTTAAGTGTTTTATTTA
Alignments
lowQualScore : 3333333333333 1111 33333333 33333333 11111111 111111 11 1 1111 1111 11 1 11111111 444444444444444 111 11111111111 33333333333333333333333333333
lowQualScore : 0 0 0 4444444444444 7777 8 8 0 0 22222222 3 111 44 1 0 88 5 4 4 4 4 4 2 4 99999 4 2 4 3 66 77777777 5 5 5 66666666 0 5 666666 2 1 2 2 11 8 0 3 22 3 1 5 7777 0 4444 8 8 8 33 0 66 2 6666 0 8 2 1 11111111 3 6 000000000000000 0 000 3 44444444444 00000000000000000000000000000
lowQualScore : . . . ............. .... . . . . ........ . ... .. . . .. . . . . . . . . ..... . . . . .. ........ . . . ........ . . ...... . . . . .. . . . .. . . . .... . .... . . . .. . .. . .... . . . . ........ . . ............... . ... . ........... .............................
lowQualScore : 8 8 8 6666666666666 0000 0 0 8 6 22222222 5 888 22 0 3 66 7 0 0 0 0 0 5 0 22222 0 5 0 9 99 00000000 7 7 7 99999999 7 7 444444 2 0 5 5 88 0 2 2 55 2 0 5 0000 8 8888 0 0 0 88 0 66 4 1111 4 6 5 0 22222222 1 5 444444444444444 3 888 1 66666666666 00000000000000000000000000000
consensus : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A--A---------NTTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
Reference ( family-3875 ) : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A--A---------NTTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
gi|1 : CTAATTGTGTGAAAGGGGAAAAGCTGCTTACTATGTCAATAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGATGATGAAAGGTACTGTCGTGAATATTTGTTGTTTTTTGTT---GTTTTTATT----AT-GATAAATGCATAAATGTCTTTATAGGCATGTAGATCTAGTCTATGAGATTGTTGAACCCTTATAAAAAGGTCA----TAGTCCAAGACTGGCTGTACATTTGTCTCATTACATGGATATGTCTATGTCT
gi|1 : GTCTTTGGGATTCTACACCAAATACTACATCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAA-GGTCACTTAA--ACAGTCTATATCAAAG-A-A-A-AT-GCCA-TTC----TTTTTGCAC-TGCTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCAG-TCT--A-----AGTTGT-TAATAATTAGACAAT------CTTAACCGGTCGATGAGTCGAAACATATAGCTCAAACT-AATCATTTTTAAAGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGATGGC-ATTGTTTTGACCTAAATGAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTT-TAATAACCATTGCA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|1 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTG-TATCAAATACCGGTAAGTTT----CACGATAACTGTACAAACCA-ATGTGGTTCAGTTTGTTCTTACA--------TA-AAGAAAAA-AC-A---------AATTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAAACAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|10 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACTACACCTTGTATATCAAGTT-AGTG-T-TTCAAATGTTCAAAG-TGTTTCTTAAG-ACTGTGGGTGTCCATC-A-ACA-GC-ACC--TTC----TTTT-GCAT-TGTTCTGACCGTTTTG-TTTAAATAGCTGACGCAT-CACAAAGACCTGC-CCTATTCA--TCACAAAATTTTGTAATCACTAGCCAAT------TGAAACTGACCTGTCAGT----ATGTACAG------TTCAAT-ATTTCCA--GACCTAAG
gi|11 : tATGTTAAGT-----G-T-TCCGAATATTC--CG-GGCGAG--AC--GCAGTCGATATCAAAG-A-A-A-AT-AGCA-TA------TTTTGCAA-TGTTCTGAAACTTTAG-TTTTGAAGGTT--CACATACCATAAGGCCT-CACCTG-ACATCT-----GACTGT-AAGCGATTAGCAAAT------GAAAATCGCTATATCAAT
gi|12 : tacgtcatacctattTTGATATCAAATA------AGTTA----TACAATGACTATACATACCATAT-TGTTTCATTATGTACTAACT--------TT-AAAAAAAA-AATA---------TTTTTCTATTTACAAGGAAAG-TTTGCTCTT-----------TA----------ta
gi|13 : aaATCAAATATCGATAAGTTACCGATACGATGATTGTACAAACCA-ATGTTTTTTAGTCTGTACTAGCA--------TTCAACAATAT-C--G---------TTTTATTA---ACAAGGAAAG-TTTAATCTT-----------TA----------Attatgtttgtgaaaaagaaaaaaatcttcacaaacaaaaac
gi|14 : gttattagaTTGATATCAAATA------AGTTA----TACAATGACTATATACGCCATAT-TGTTTCATTATGTACTAACA--------TT-CA-AAAAA-T--A---------TTTTTCTATTTACAAGGAAAGATTTGCTCTT-----------TA----------Atctgtttgcgaaaaatatcttcacaaacaa
gi|15 : taTTGATATCAAATA------AGTTA----TACAATGACTATATATACTATAT-TGTTTCATTTTGTACTAACAATTTTTTTTT-A----------------------TTTATTT---ACAAGGAAAG-TTTGCTCTT-----------TA----------G----------TCTGTGAAAAAGAAAAAAACCtctgttttgtgaaaaagaaaaaaatcttcacaaacaaaa
gi|16 : tgttaG-TATCAAATACCGATAAGTTA----TACAATAACTGTACAAACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAAATG--T---------TTTTACTA---GCAAGGAAAG-TTTGCTGTT-----------TA----------AA--------TTC------ACAGACAAAAACCAtcacaaacaagaac
gi|17 : catattttgttatgaTTTG-TATCAAATACTGGTAATGTA----T----------TTCAAA-----TGTGTTTCATTTTGTATTAACA--------TT------TAA-A--ACTTTTTTTTTTTTACTA---GCAAGGAAAG-TTTGCTCTTGAATCTGTTTGTG----------AAAAAGATC-TTC------ACAAACAAAAA
gi|18 : tgttaTTAG-TATCA--TA----TAAGTTA----TACAATGATTGTACATACCA-AAGTGTTTCAGTTTGTACTAACA--------TT-AAAAAAAG-----------------TATTA---ACAAGGAAAG-TTTGCTCTT-----------TATTCTGTTTGTAAAAAAGATCTTC------ACAAACAAAAA
gi|19 : tgttaTTAG-TATCAAATACCGTTGAGTTG----TACAATAACTGTACACACCA-ATGTGTTTCAGTTTGTTCTAACA--------TT-AAAAAAA--------------------------------AAAG-TTTGCTTTT-----------TA----------AA--------TTC------ACGGACAAAATACATAa
gi|2 : ttttaaatatattatgttaGTCTCTGGGATCCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAG-GGTTACTAAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACACTTTTA-CTTAGAAAGGT--CACAT-C------ATCT-C-CCTG-TCA--T-----AGTTGT-TAATAGTAAGACAATTAGTTAGGTAACCGGTCTATCAGTCGAAACATATAGCTCTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTTCGCC--ATACCATTTCATTGTGATGACGG--ATTGTTTTGACCTAAATAAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAAACATTGGA----TT-TT-TTCAATTTCACAGTATAAAGCT-ATTTTTGT--GTTAT
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTG-TATCAAATATCGGTAAGTTA----TA---------TACAAACCA-ATGTGTTTTAGTATGTTCTAATA--------TT-AAGAAAAA-A--A---------AT--ACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAGAAACCATAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgtatcaaatatcggtaagttatatacaaaccaatgtgttttagtatgttctaatattaagaaaaaaaatactagcaaggaaagtttgctctttaaattcacagacagaaaccata
gi|20 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctctgggatcctacaccaaatactacaccttgaatatcaagttaggtatttgaattttcgtagggttactaaaacagtctatatcaaagaaaacgccattctttttgcactgttctgacacttttacttagaaaggtcacatcatctccctgtcatagttgttaatagtaagacaattagttaggtaaccggtctatcagtcgaaacatatagctctaattgaatcattttcaatgaccaagatcataaagttcgccataccatttcattgtgatgacggattgttttgacctaaataaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggcttataataaacattggattttttcaatttcacagtataaagctatttttgtgttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaAAATCCTACACCTTGAATATCAAGTT-AGAG-T-TTCTAATGATCACTG-AGTTTCTTAACGATTGTC---ATCAAAC-A-A-ACACAGCAA-TTTAACACTTTTGAACATAT--TAACCATGTTG-TTTTGACAG
gi|21 : ATACTTC-CCATGAATGTCAAGTTGAA-G-T-TTCGA---TTGGTAGCGGTTT-TAAA--ACTGTTAATATCATAC-ACA-A-AC-AGCA-TTC----CTTTTGCAA-TGTTCTGAAC--TCTG-TTT-GAATGTT--CACAT-ct
gi|22 : TACTATGCCTTGCATACCAAGTT-TG-AAT-CTCGAATGTTCATGG-CATTTCTTAA--AAAGTCTGTATCAAAGAA-A-A-AT-GATAGCTT----TTTTTGCGC-TGTTCTGATTCATTTA-TTTga
gi|24 : cttATATCAAGTT----------CGA------GCTG-CGTTCCTTAA--ACAATCGATATCAAAG-A-A-A-AT-G----------------GCGT-AGATCTGGCCCCTTTGTTTTAGAtta
gi|25 : cATCAAATACGGGTAATTTA----TACAATGACTGTACAAACCA-ATGTTATTCAGTtg
gi|26 : tttaatattgttattagaACTACACTTTGTATATTGAGTT-AATG-T-TTCAAATATTCGCAG-TGTTTATAAA--A
gi|3 : CCAATTGTGTGAAAGAGGAAAAGCTGCCTGCTATGCCAACAAAGATGCTTCAAAGGTTCATACTGCTGCAAAAGACGATGATGAAAGGTACTGTAGTAAATATTTGTT---TTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTATATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATATCTtttcggg
gi|3 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacGTCTTAGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCCTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTTTCTATTTTG-CTTGGAATGGT--CAAAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGAAAAT------GGTAATCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAtgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctgtcttagggattctacaccaaatactacaccttgaatatcaagttgaattttccttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctttctattttgcttggaatggtcaaattgtctccctgtcatagttgttaataattagaaaatggtaatcggtctatcagtcaaaacatatagctgtaattgaatcattttcag
gi|4 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacccaattgtgtgaaagaggaaaagctgcctgctatgccaacaaagatgcttcaaaggttcatactgctgcaaaagacgatgatgaaaggtactgtagtaaatatttgtttttttgtttttataatgataaatgcataaatttctttataggcatgtatatctagtctatgatattgttgaacccttataaaaggtcataattagtccaagacttgctgtatatttgtctcgttacatggatgtttctatatcttgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCGTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTT------------AACAAT------GGTAACCGGTCTATCAGTCAAAA-ATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTACGCCATATACCGTTTCATTGTGATGACGGCTTTTTTTTTTACCTTAATGAATATGTA-ATTCACT-AAGTTGTTATACAAAGTATAGTAGATCTATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TTATTCAGTTTCACAATATAAAGCTAATTTATTG--GTAATg
gi|4 : TTTG-TATCAAATACCGGTAAGTTA----TACAATAACTGTACAAACCA-ATTTGTTTCAGTTTGTTCTAACA--------TT-AATAAAAA-A--AC--------ATTTACTA---GCAAGAAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagttatacaataactgtacaaaccaatttgtttcagtttgttctaacattaataaaaaaacatttactagcaagaaaagtttgctctttaaattcagtcaaaaaccat
gi|5 : tctctgggattctacaccaaatactacaccttgaatatcaagttgaattttcgttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctgacccttttgcttagaaaggtcacattgtctccctgtcatagttaacaatggtaaccggtctatcagtcaaaaatatagctgtaattgaatcattttcaatgaccaagatcataaagtacgccatataccgtttcattgtgatgacggcttttttttttaccttaatgaatatgtaattcactaagttgttatacaaagtatagtagatctatagtttaacaatgctgtactggcttataataaccattggatttttattcagtttcacaatataaagctaatttattggtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAG------GGTAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACAGC-ATTGTTTTGACGTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTTTACTGGCTTATAATAACTATTGGAATTTTT-TT-TTCAATTTCACAATATATAGCT-ATT
gi|5 : TTTA-TATCAAATACCGGTAAATTA----TACAATAACTGTACAAACCA-ACGTGTTTCAGTTTGTTCTAACC--------TG-AAGAAAAA-A--A------------TATAA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaatttatatcaaataccggtaaattatacaataactgtacaaaccaacgtgtttcagtttgttctaacctgaagaaaaaaatataagcaaggaaagtttgctctttaaattcagtcaaaaaccata
gi|6 : gaaaggtcacattgtctccctgtcatagttgttaataattagacaagggtaaccggtctatcagtcaaaacatatagctgtaattgaatcattttcaatgaccaagatcataaagtgcgccatataccatttcattgtgatgacagcattgttttgacgtaaatgaatatggatattcactaagttgttatacaaagtatagtagatagtttaacaatgctttactggcttataataactattggaatttttttttcaatttcacaatatatagctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaaCCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTAATACTGCTGCCAAAGACGACAATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TTTTTGTTTTTATACTGTATTGATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTAAAGCCTTAT-AAAAGGTCATAATTAGTCCAAAACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTTTGTC
gi|7 : gaaggcgatttgcaatatggccaatgccaaatcatgtttaaatatatgtttttatttaagtgcaaaccaaataagtgtcaaattatgtacaacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttttactttgttatttctttgtatttctcctcttattaatacgttaatggaagacccggttacCCTATTGTGTGAAAGGGGAAAAGCTTCCTGCTATGTCAATAAAG-----------GTTCATACTGCTGCCAAAGATGATGA-----GGTACTGTAGTGAATATTTGTT----TT--TT---GTTTTTATA----AT-GATGAATGCATCAATTTCTTTATAGGCATGTATATCTAGTCGATGGTATTGTTGAACCCTTAT-AAAAGGTCATAGTTAGTCCAAGACTGGCTGTATATTTGTCTCGTTACAAGGATATTTCTATGTC
gi|8 : aggcgatttggaatatggccaatgccaaatcatgtttaaatatatgttttgatttaagtacaaatcaaataagtgcattagaaatactgtacgacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttcttctttgttatttctttgtatttctcctcttattatgcgttaatggaagaccaggttacCCAGTTGTGTGAAAGTGAAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTG----------------TTTTTATA----AT-GATAAATGCATAAATTTATTTATAGGCATGAAGATCTAGTCTATGATATTGTTGAAGCCTTAT-AAAAGGTGATAATTAGTACAAGACTTGCTGTGTATTTGTCTCGTTACGT-GATGTTTCTATGTCT
gi|9 : tgttttgactgaagttcaaatcaaataagtgtcaaattctgtacaacgtacatgatacagtagcggttttgcctacgagctcgtgaggaaaagtttgattttccagcttttactttgttttttctttgtatttctcctcttattaatacgttaagggaagacccggttatGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTTGTT-TTCAATTTTACAATATAAAGCT-ATTTTTTTGGGTAAT
gi|9 : TTTA-TATCAAATACCGATATGTTA----TACAATAACTGTACAAAACA-ATGTGTTTCAGTTTGTTCTAACA--------TA-AAGAAAAA-A--AAC-------ATTTACTA---GCAAGGAATG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAGACCATAtttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatattttatatcaaataccgatatgttatacaataactgtacaaaacaatgtgtttcagtttgttctaacataaagaaaaaaaacatttactagcaaggaatgtttgctctttaaattcagtcaaagaccatat
blockSeqs : GTTTTTTTTTT CTGT T . AGTGT G AAA CG T CG G A C C C A C G TAACA A G T A GA ACCATAAG G A T TCACAA G TAGTTA G T C C AT T A CT T T A ATCT ATTT G A A GG A TC A CCGA T G A ATTTTTTT C A AACTTTTTTTTT TTT A GAATCTGTTTG TTCTGTTTGTAAAAAAGATCTTC
blockSeqs : TTTTT . . . AGGTA A GTA T A G G . . . . . G . C . C . T . CACAAAG . . . TCT . . A C G G AT . A C T A . . T . . . . A CC A . T G A . . C AATAT TTT . . AAAAAGATCTTC
blockSeqs : TTTT . . . AGAGT T ACT G A . T . . . . . C . C . C . A . C . . . T . . A C G G AT . . . . A . . T . . . . A CT G . T G A . . A AAACA . . . GTCTGTGAA
blockSeqs : . . . . GAAGT G GTA G T . A . . . . . C . C . A . T . T . . . T . . A C G G . . . . . . . . CC T . . G A . . A TGTT . . . AATTC
blockSeqs : TGAAT G ATG A T . T . . . . . G . T . C . A . T . . . T . . . . . G . TC G . . G T . . A AACA . . . AATTC
blockSeqs : AATGT A GCT C T . G . . . . . A . C . C . G . T . . . T . . . CG G . . G A . . G CGT . . . AATTC
blockSeqs : GT T GCA C C . T . . . . . C . C . A . A . . CC G . . G A . . T TAT . . . AATT
blockSeqs : . T CTT T T . T . . . . . C . . . C . . . CC G . . T T . . G AAA . . . AATT
blockSeqs : . . GTT G A . . . . . . . . . . . . . . CC A . . G T . . G AA . . . AATT
blockSeqs : . . C G A . . . . . . G T . . . . . . .
blockSeqs : . . . . . . T . . . . . . .
blockSeqs : . . . . . T . . . . . . .
blockSeqs : . . . . .
blockSeqCons : TTTT********* AACA***********
originalCons : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTGTTTTT--TT---GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAA-A--A---------NTTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
finalCons : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTTTTT---------GTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA--------TT-AAGAAAAAAACA-----------TTTACTA---GCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTGAAGGCGATTGGGAATATGGCCAATGCCAAATTATGTTTAAATATATGTTTTGATTTAAGTGCAGCGATTTGGAATATGGCCAATGCCAAATTATGTTTAAATATATG
Unaligned ( gi|27 ): TGGATTGACAGTCAGACCTACTGTTAATAACTGAGCTGGCCAGGCCTGGGCCTGCT
Unaligned ( gi|28 ): CTTTAGTAATTTTCTTAACTTTAAGTGTTTTATTTA
Alignments
lowQualScore : 55555555555555 1111 33333333 33333333 11111111 111111 11 1 1111 1111 11 1 1111111 1111 3333333333333333333 11111111111 33333333333333333333333333333
lowQualScore : 0 0 0 33333333333333 7777 8 8 0 0 22222222 3 111 44 1 0 88 5 4 4 4 4 4 2 4 99999 4 2 4 3 66 77777777 5 5 5 66666666 0 5 666666 2 1 2 2 11 8 0 3 22 3 1 5 7777 0 4444 8 8 8 33 0 66 2 6666 0 8 2 1 0000000 0000 8888888888888888888 1 3 44444444444 00000000000000000000000000000
lowQualScore : . . . .............. .... . . . . ........ . ... .. . . .. . . . . . . . . ..... . . . . .. ........ . . . ........ . . ...... . . . . .. . . . .. . . . .... . .... . . . .. . .. . .... . . . . ....... .... ................... . . ........... .............................
lowQualScore : 8 8 8 66666666666666 0000 0 0 8 6 22222222 5 888 22 0 3 66 7 0 0 0 0 0 5 0 22222 0 5 0 9 99 00000000 7 7 7 99999999 7 7 444444 2 0 5 5 88 0 2 2 55 2 0 5 0000 8 8888 0 0 0 88 0 66 4 1111 4 6 5 0 0000000 2222 8888888888888888888 9 1 66666666666 00000000000000000000000000000
consensus : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTTG------TTT----TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA-------TTAAG-AAAAAAAC--------A-TT----TACTAGCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
Reference ( family-3875 ) : CCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTGTT-------TT-----TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-T-TTCGAATNTTCGTNG-GGTTNCTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACCCTTTTG-TTTAGAAAGGT--CACAT-C------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAT------GGTAACCGGTCTATCAGTCGAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACGGC-ATTGTTTTGACCTAAATGAATATGGATATTCNCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG-TATCAAATACCGGTAAGTTA----TACAATGACTGTACAAACCA-ATGTGTTTCAGTTTGTNCTAACA-------TTAAG-AAAAAAAC--------A-TT----TACTAGCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAAAAACCATA
gi|1 : CTAATTGTGTGAAAGGGGAAAAGCTGCTTACTATGTCAATAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGATGATGAAAGGTACTGTCGTGAATATTTGTTG------TTTTTTGTTGTTTTTATT----AT-GATAAATGCATAAATGTCTTTATAGGCATGTAGATCTAGTCTATGAGATTGTTGAACCCTTATAAAAAGGTCA----TAGTCCAAGACTGGCTGTACATTTGTCTCATTACATGGATATGTCTATGTCT
gi|1 : GTCTTTGGGATTCTACACCAAATACTACATCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAA-GGTCACTTAA--ACAGTCTATATCAAAG-A-A-A-AT-GCCA-TTC----TTTTTGCAC-TGCTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCAG-TCT--A-----AGTTGT-TAATAATTAGACAAT------CTTAACCGGTCGATGAGTCGAAACATATAGCTCAAACT-AATCATTTTTAAAGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGATGGC-ATTGTTTTGACCTAAATGAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTT-TAATAACCATTGCA---TTT-TT-TTCAATTTCACAATATAAAGCT-ATTTTTTT--GTAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|1 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTG-TATCAAATACCGGTAAGTTT----CACGATAACTGTACAAACCA-ATGTGGTTCAGTTTGTTCTTACA-------TAAAG-AAAAA-ACA-------A-AT----TACTAGCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAAACAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagtttcacgataactgtacaaaccaatgtggttcagtttgttcttacataaagaaaaaacaaattactagcaaggaaagtttgctctttaaattcacaaacaaaaaccata
gi|10 : ctaattgtgtgaaaggggaaaagctgcttactatgtcaataaagatgcttcaaaggttcatactgctgccaaagacgatgatgaaaggtactgtcgtgaatatttgttgttttttgttgtttttattatgataaatgcataaatgtctttataggcatgtagatctagtctatgagattgttgaacccttataaaaaggtcatagtccaagactggctgtacatttgtctcattacatggatatgtctatgtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctttgggattctacaccaaatactacatcttgaatatcaagttaggtatttgaattttcgtaaggtcacttaaacagtctatatcaaagaaaatgccattctttttgcactgctctgacccttttgcttagaaaggtcacattgtctcccagtctaagttgttaataattagacaatcttaaccggtcgatgagtcgaaacatatagctcaaactaatcatttttaaagaccaagatcataaagtgcgccatataccatttcattgtgatgatggcattgttttgacctaaatgaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggctttaataaccattgcatttttttcaatttcacaatataaagctatttttttgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACTACACCTTGTATATCAAGTT-AGTG-T-TTCAAATGTTCAAAG-TGTTTCTTAAG-ACTGTGGGTGTCCATC-A-ACA-GC-ACC--TTC----TTTT-GCAT-TGTTCTGACCGTTTTG-TTTAAATAGCTGACGCAT-CACAAAGACCTGC-CCTATTCA--TCACAAAATTTTGTAATCACTAGCCAAT------TGAAACTGACCTGTCAGT----ATGTACAG------TTCAAT-ATTTCCA--GACCTAAG
gi|11 : tATGTTAAGT-----G-T-TCCGAATATTC--CG-GGCGAG--AC--GCAGTCGATATCAAAG-A-A-A-AT-AGCA-TA------TTTTGCAA-TGTTCTGAAACTTTAG-TTTTGAAGGTT--CACATACCATAAGGCCT-CACCTG-ACATCT-----GACTGT-AAGCGATTAGCAAAT------GAAAATCGCTATATCAAT
gi|12 : tacgtcatacctattTTGATATCAAATA------AGTTA----TACAATGACTATACATACCATAT-TGTTTCATTATGTACTAACT-------TTAAA-AAAAAAAT--------A-TTTTTCTATTTACAAGGAAAG-TTTGCTCTT-----------TA----------ta
gi|13 : aaATCAAATATCGATAAGTTACCGATACGATGATTGTACAAACCA-ATGTTTTTTAGTCTGTACTAGCA-------TTCA--ACAATATC--------GTTT----TATTAACAAGGAAAG-TTTAATCTT-----------TA----------Attatgtttgtgaaaaagaaaaaaatcttcacaaacaaaaac
gi|14 : gttattagaTTGATATCAAATA------AGTTA----TACAATGACTATATACGCCATAT-TGTTTCATTATGTACTAACA-------TT----CAAAAAAT--------A-TTTTTCTATTTACAAGGAAAGATTTGCTCTT-----------TA----------Atctgtttgcgaaaaatatcttcacaaacaa
gi|15 : taTTGATATCAAATA------AGTTA----TACAATGACTATATATACTATAT-TGTTTCATTTTGTACTAACAATTTTTTTT-----------T--------A-TT----TATTTACAAGGAAAG-TTTGCTCTT-----------TA----------G----------TCTGTGAAAAAGAAAAAAACCtctgttttgtgaaaaagaaaaaaatcttcacaaacaaaa
gi|16 : tgttaG-TATCAAATACCGATAAGTTA----TACAATAACTGTACAAACCA-ATGTGTTTCAGTTTGTTCTAACA-------TTAAA-AAAAATGT--------T-TT----TACTAGCAAGGAAAG-TTTGCTGTT-----------TA----------AA--------TTC------ACAGACAAAAACCAtcacaaacaagaac
gi|17 : catattttgttatgaTTTG-TATCAAATACTGGTAATGTA----T----------TTCAAA-----TGTGTTTCATTTTGTATTAACA-------TT------TAAAACTTTTTTTTT-TT----TACTAGCAAGGAAAG-TTTGCTCTTGAATCTGTTTGTG----------AAAAAGATC-TTC------ACAAACAAAAA
gi|18 : tgttaTTAG-TATCA--TA----TAAGTTA----TACAATGATTGTACATACCA-AAGTGTTTCAGTTTGTACTAACA-------TTAAA-AAAAG-------------------TATTAACAAGGAAAG-TTTGCTCTT-----------TATTCTGTTTGTAAAAAAGATCTTC------ACAAACAAAAA
gi|19 : tgttaTTAG-TATCAAATACCGTTGAGTTG----TACAATAACTGTACACACCA-ATGTGTTTCAGTTTGTTCTAACA-------TTAAA-AAAA-------------------------------AAAG-TTTGCTTTT-----------TA----------AA--------TTC------ACGGACAAAATACATAa
gi|2 : ttttaaatatattatgttaGTCTCTGGGATCCTACACCAAATACTACACCTTGAATATCAAGTT-AG-G-TATTTGAATTTTCGTAG-GGTTACTAAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGCAC-TGTTCTGACACTTTTA-CTTAGAAAGGT--CACAT-C------ATCT-C-CCTG-TCA--T-----AGTTGT-TAATAGTAAGACAATTAGTTAGGTAACCGGTCTATCAGTCGAAACATATAGCTCTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTTCGCC--ATACCATTTCATTGTGATGACGG--ATTGTTTTGACCTAAATAAATATGGATATTCTCTAAAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAAACATTGGA----TT-TT-TTCAATTTCACAGTATAAAGCT-ATTTTTGT--GTTAT
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTG-TATCAAATATCGGTAAGTTA----TA---------TACAAACCA-ATGTGTTTTAGTATGTTCTAATA-------TTAAG-AAAAAAA---------A-T------ACTAGCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TTC------ACAGACAGAAACCATAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgtatcaaatatcggtaagttatatacaaaccaatgtgttttagtatgttctaatattaagaaaaaaaatactagcaaggaaagtttgctctttaaattcacagacagaaaccata
gi|20 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctctgggatcctacaccaaatactacaccttgaatatcaagttaggtatttgaattttcgtagggttactaaaacagtctatatcaaagaaaacgccattctttttgcactgttctgacacttttacttagaaaggtcacatcatctccctgtcatagttgttaatagtaagacaattagttaggtaaccggtctatcagtcgaaacatatagctctaattgaatcattttcaatgaccaagatcataaagttcgccataccatttcattgtgatgacggattgttttgacctaaataaatatggatattctctaaagttgttatacaaagtatagtagatagtttaacaatgctgtactggcttataataaacattggattttttcaatttcacagtataaagctatttttgtgttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaAAATCCTACACCTTGAATATCAAGTT-AGAG-T-TTCTAATGATCACTG-AGTTTCTTAACGATTGTC---ATCAAAC-A-A-ACACAGCAA-TTTAACACTTTTGAACATAT--TAACCATGTTG-TTTTGACAG
gi|21 : ATACTTC-CCATGAATGTCAAGTTGAA-G-T-TTCGA---TTGGTAGCGGTTT-TAAA--ACTGTTAATATCATAC-ACA-A-AC-AGCA-TTC----CTTTTGCAA-TGTTCTGAAC--TCTG-TTT-GAATGTT--CACAT-ct
gi|22 : TACTATGCCTTGCATACCAAGTT-TG-AAT-CTCGAATGTTCATGG-CATTTCTTAA--AAAGTCTGTATCAAAGAA-A-A-AT-GATAGCTT----TTTTTGCGC-TGTTCTGATTCATTTA-TTTga
gi|24 : cttATATCAAGTT----------CGA------GCTG-CGTTCCTTAA--ACAATCGATATCAAAG-A-A-A-AT-G----------------GCGT-AGATCTGGCCCCTTTGTTTTAGAtta
gi|25 : cATCAAATACGGGTAATTTA----TACAATGACTGTACAAACCA-ATGTTATTCAGTtg
gi|26 : tttaatattgttattagaACTACACTTTGTATATTGAGTT-AATG-T-TTCAAATATTCGCAG-TGTTTATAAA--A
gi|3 : CCAATTGTGTGAAAGAGGAAAAGCTGCCTGCTATGCCAACAAAGATGCTTCAAAGGTTCATACTGCTGCAAAAGACGATGATGAAAGGTACTGTAGTAAATATTTGTT-------TTT----TTGTTTTTATA----AT-GATAAATGCATAAATTTCTTTATAGGCATGTATATCTAGTCTATGATATTGTTGAACCCTTAT-AAAAGGTCATAATTAGTCCAAGACTTGCTGTATATTTGTCTCGTTACATGGATGTTTCTATATCTtttcggg
gi|3 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacGTCTTAGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCCTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTTTCTATTTTG-CTTGGAATGGT--CAAAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGAAAAT------GGTAATCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAtgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctgtcttagggattctacaccaaatactacaccttgaatatcaagttgaattttccttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctttctattttgcttggaatggtcaaattgtctccctgtcatagttgttaataattagaaaatggtaatcggtctatcagtcaaaacatatagctgtaattgaatcattttcag
gi|4 : cgatttggaatatggccaatgccaaattatgtttaaatatatgttttgatttaagtgcagatcaaataagtgcattgaaaattctgtacaacgtacatgatacagaagcggttttgcctacgagctcgggaggaataggatgattttccagttttttctttgtatttctcctcatggaagacccggttacccaattgtgtgaaagaggaaaagctgcctgctatgccaacaaagatgcttcaaaggttcatactgctgcaaaagacgatgatgaaaggtactgtagtaaatatttgtttttttgtttttataatgataaatgcataaatttctttataggcatgtatatctagtctatgatattgttgaacccttataaaaggtcataattagtccaagacttgctgtatatttgtctcgttacatggatgtttctatatcttgttaacctaaccagtttcgagggatcatggaaggttaaccagtactcgagcacaccccatctccacaagtaactgatacctttcccacttaaatcagcagtgagagataaatgataatgaaaagcaatgtcgtatatcaaccatcacagagattcagactgggtggagattcaaactcacgacccttggattgatagtcagatgcgctaacgactgagctagtcaggccctgctTCTCTGGGATTCTACACCAAATACTACACCTTGAATATCAAGTT-----------GAATTTTCGTTG-GGTTACTTAA--ACAGTCTATATCAAAG-A-A-A-AC-GCCA-TTC----TTTTTGTAC-TGTTCTGACCCTTTTG-CTTAGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTT------------AACAAT------GGTAACCGGTCTATCAGTCAAAA-ATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTACGCCATATACCGTTTCATTGTGATGACGGCTTTTTTTTTTACCTTAATGAATATGTA-ATTCACT-AAGTTGTTATACAAAGTATAGTAGATCTATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTT-TTATTCAGTTTCACAATATAAAGCTAATTTATTG--GTAATg
gi|4 : TTTG-TATCAAATACCGGTAAGTTA----TACAATAACTGTACAAACCA-ATTTGTTTCAGTTTGTTCTAACA-------TTAAT-AAAAAAAC--------A-TT----TACTAGCAAGAAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgtatcaaataccggtaagttatacaataactgtacaaaccaatttgtttcagtttgttctaacattaataaaaaaacatttactagcaagaaaagtttgctctttaaattcagtcaaaaaccat
gi|5 : tctctgggattctacaccaaatactacaccttgaatatcaagttgaattttcgttgggttacttaaacagtctatatcaaagaaaacgccattctttttgtactgttctgacccttttgcttagaaaggtcacattgtctccctgtcatagttaacaatggtaaccggtctatcagtcaaaaatatagctgtaattgaatcattttcaatgaccaagatcataaagtacgccatataccgtttcattgtgatgacggcttttttttttaccttaatgaatatgtaattcactaagttgttatacaaagtatagtagatctatagtttaacaatgctgtactggcttataataaccattggatttttattcagtttcacaatataaagctaatttattggtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAAGGT--CACAT-T------GTCT-C-CCTG-TCA--T-----AGTTGT-TAATAATTAGACAAG------GGTAACCGGTCTATCAGTCAAAACATATAGCTGTAATTGAATCATTTTCAATGACC-AAGATCATAAAGTGCGCCATATACCATTTCATTGTGATGACAGC-ATTGTTTTGACGTAAATGAATATGGATATTCACT-AAGTTGTTATACAAAGTATAGTAG----ATAGTTTAACAATGCTTTACTGGCTTATAATAACTATTGGAATTTTT-TT-TTCAATTTCACAATATATAGCT-ATT
gi|5 : TTTA-TATCAAATACCGGTAAATTA----TACAATAACTGTACAAACCA-ACGTGTTTCAGTTTGTTCTAACC-------TGAAG-AAAAAAAT--------A-------TA--AGCAAGGAAAG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAAACCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaatttatatcaaataccggtaaattatacaataactgtacaaaccaacgtgtttcagtttgttctaacctgaagaaaaaaatataagcaaggaaagtttgctctttaaattcagtcaaaaaccata
gi|6 : gaaaggtcacattgtctccctgtcatagttgttaataattagacaagggtaaccggtctatcagtcaaaacatatagctgtaattgaatcattttcaatgaccaagatcataaagtgcgccatataccatttcattgtgatgacagcattgttttgacgtaaatgaatatggatattcactaagttgttatacaaagtatagtagatagtttaacaatgctttactggcttataataactattggaatttttttttcaatttcacaatatatagctattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattgagtttttttgatgtaaCCAATTGTGTGAAAGGGGAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTAATACTGCTGCCAAAGACGACAATGAAAGGTACTGTAGTAAATATTTGTTGTTTTTTTT-----TTGTTTTTATACTGTATTGATAAATGCATAAATTTCTTTATAGGCATGTAGATCTAGTCTATGATATTGTTAAAGCCTTAT-AAAAGGTCATAATTAGTCCAAAACTTGCTGTATATTTGTCTCGTTACATGGATATTTCTTTGTC
gi|7 : gaaggcgatttgcaatatggccaatgccaaatcatgtttaaatatatgtttttatttaagtgcaaaccaaataagtgtcaaattatgtacaacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttttactttgttatttctttgtatttctcctcttattaatacgttaatggaagacccggttacCCTATTGTGTGAAAGGGGAAAAGCTTCCTGCTATGTCAATAAAG-----------GTTCATACTGCTGCCAAAGATGATGA-----GGTACTGTAGTGAATATTTGTT-------TT-----TTGTTTTTATA----AT-GATGAATGCATCAATTTCTTTATAGGCATGTATATCTAGTCGATGGTATTGTTGAACCCTTAT-AAAAGGTCATAGTTAGTCCAAGACTGGCTGTATATTTGTCTCGTTACAAGGATATTTCTATGTC
gi|8 : aggcgatttggaatatggccaatgccaaatcatgtttaaatatatgttttgatttaagtacaaatcaaataagtgcattagaaatactgtacgacgtacatgatacagtagcggttttgcctacgagctcgggaggaaaagtttgattttccagcttcttctttgttatttctttgtatttctcctcttattatgcgttaatggaagaccaggttacCCAGTTGTGTGAAAGTGAAAAAGCTGCCTGCTATGTCAACAAAGATGCTTCAAAGGTTCATACTGCTGCCAAAGACGACGATGAAAGGTACTGTAGTAAATATTTG-------------------TTTTTATA----AT-GATAAATGCATAAATTTATTTATAGGCATGAAGATCTAGTCTATGATATTGTTGAAGCCTTAT-AAAAGGTGATAATTAGTACAAGACTTGCTGTGTATTTGTCTCGTTACGT-GATGTTTCTATGTCT
gi|9 : tgttttgactgaagttcaaatcaaataagtgtcaaattctgtacaacgtacatgatacagtagcggttttgcctacgagctcgtgaggaaaagtttgattttccagcttttactttgttttttctttgtatttctcctcttattaatacgttaagggaagacccggttatGTATAGTAG----ATAGTTTAACAATGCTGTACTGGCTTATAATAACCATTGGA---TTTGTT-TTCAATTTTACAATATAAAGCT-ATTTTTTTGGGTAAT
gi|9 : TTTA-TATCAAATACCGATATGTTA----TACAATAACTGTACAAAACA-ATGTGTTTCAGTTTGTTCTAACA-------TAAAGAAAAAAAAC--------A-TT----TACTAGCAAGGAATG-TTTGCTCTT-----------TA----------AA--------TT--------CAGTCAAAGACCATAtttttatttcattgtaacatttaacaaaatcaaatgtaaaaaatacaaattatgatgtagtctgtacaaaatttctgatataacatttttatatttgcaaattaagaggcaaactttccaggttctttagttaatgtattaactctgagttttttttatattttgtttatatattttatatcaaataccgatatgttatacaataactgtacaaaacaatgtgtttcagtttgttctaacataaagaaaaaaaacatttactagcaaggaatgtttgctctttaaattcagtcaaagaccatat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): TTGAAGGCGATTGGGAATATGGCCAATGCCAAATTATGTTTAAATATATGTTTTGATTTAAGTGCAGCGATTTGGAATATGGCCAATGCCAAATTATGTTTAAATATATG
Unaligned ( gi|27 ): TGGATTGACAGTCAGACCTACTGTTAATAACTGAGCTGGCCAGGCCTGGGCCTGCT
Unaligned ( gi|28 ): CTTTAGTAATTTTCTTAACTTTAAGTGTTTTATTTA