lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 11111 1 11 6666666666666666666666666666666666666666666666666 111111111111 5555555555555555555555555 11111111 111111
lowQualScore : 5 777 55555 4 6 8888 2 22 8888888888888888888888888888888888888888888888888 44 55 00 2 333 2 999999999999 2 7777777777777777777777777 1 22 1 6666 00000000 2 777777 2 4 2
lowQualScore : . ... ..... . . .... . .. ................................................. .. .. .. . ... . ............ . ......................... . .. . .... ........ . ...... . . .
lowQualScore : 0 000 55555 0 7 5555 8 44 9999999999999999999999999999999999999999999999999 22 99 66 1 777 1 888888888888 2 9999999999999999999999999 7 33 7 6666 33333333 1 888888 2 2 4
consensus : ACTCT-GT---TTTCC----GTTACTG-AAAAATAAT----TCACGAGTT-ATT--C--GN--A--TG-GGGTGTCGCGAG--ACTTG-A-----GTCAAGACTGAC--GTCA--GTCACGA-GT---GA-C--TC--NT----CCCAT-T-C---TG----T-AA-TAAC-GNGGGAATTAT-TT--TT-CAGTAA----C-G------G-AAA-----A-CAACA-GTTGAATAAA
Reference ( gi|5 ) : ACTCT-GT---TTTCT----ATTACTG-AAAAATTAT----TCACAAGTC-ATT--C--AT--A--TG-GGGTGTCGCAAGT-ACTTGTACATCGGTCAAGACTGAT--GTCA--GTCATGA-GT---GA-C--TC--AT----CCCAT-T-C---TG----T-AA-TATT-TAGGGAATTAT-TT--TT-CAGTAA----C-A------G-AAC-----A-CAGCA-GTTGAATAAAAT
gi|14 : ACTCTTGT---TTTCT----GATATTGAAAAAATAAT----ACGCGATTT-ATTTGC--AG--A--TGTGGGTGTCGTGAG
gi|7 : aaagtgtttgttcaACTTT-TT---TTTCT----GTTACT--AAAAAT---------ACAATTT-CTT--C--AC--AAATG-GGGTGTCcgactctttcaagtacagaatatggcaggaattatttttcagta
gi|13 : aactTCT-GT---TTTCTT---GTTACTG-AAACATTAT----TTACAAGTT-ATT--C--ATAAA--TG-GAGAGTC-------ACTTGT------GT-----CTGAT--GTC-----------------A-C--TC--TT----CTCAT-T-CA--TG------AA-TAAT-GAGGGAATTGT-TT--TC-CAGaataatgatataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
gi|6 : agagtttatctaCT-GTCACTTTCC----ATTACTG-AAAAATAATGACCTC----GTT-ATT------T--G--CG-AAGGGGAGCAGG--GCCTGGGC----GTCATGGGTAAC--GTCA--GTTAAAT-GT---GA--------GT----CTCAT-T-C----G----TGAA-TAAC-TCCTGAGTTAT-TT--TT-CAGTAA----C-A------T-AAA-----A-GAACA-GTTGAATAAA
gi|1 : taaatcaaCT-GT---TTTAC----GTTTCTG-AAAAATAAT----TCCC---TC-TTT--T--GT-----TA-GGA-ATTGAAAG--------AGACCA-TTAAGACTGCC--ATCA--CTCGTGA------CA-C--TC--------TCCGT-T-----TG----CGAA-TAAC-TTGTAAATTAT-TT--TT-TA--AATACCC-A------G-AAA-----A-CAATG-GTTAAATAct
gi|1 : T-GT---TTTCTGGGTATT--TA-AAAAATAAT----TTACAAGTT-ATT--CGCAA--A--CG-GAG-------AGT-------------GTCACGAGTGAT--GGCA--GTC-TTA-AT---GGTC--TC--TT----TCAAT-T-C---C-----T-AA-CAAAAGAGGGAATTAT-TT--TT-CAGAAA----C-G------T-AA---------AACA-GTTGAATAAAttgaataaactatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|15 : tatttaaccatT-GT---TTTTC----GTTACTG-AAAAATAAT----TCACAAGTT-ATT--T--GCTAA--TG-GGGTGTCATGAGTGACTctatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : atattataatatagaaacagtT-GT---TTTCC----GTAACTG-AAACAGAGT----TCAAAAGTTTAGT--C--ATGAA--TG-GGTTGTCACAAGC-A---------------------AT--GTCT--ATCACAA-GT---GG-C--TC--TT----CCCAT-TCC---TG------AA-TAAT-GACGGTATTAT-TT--Tcttcccattgtggattaatgagggaactatatttcagt
gi|6 : tatagtttattcaactgtT---TTTAT----GTTACTG-AAAAATAAC----TCAGGAGTT-ATT--C--AC--------GAATG-----AG--ACT--CACAT---TTA--ACTGAC--GTTA--CCCATGACGCCCAGG-C--CCTGCT----CCCCT-T-C----G----CAAA-TAAC-GAGGTCATTAT-TT--TT-CAGTAA----T-G------G-AAA-----G-TGACA-GTTGA
gi|9 : taaaT---TTTTT----GTAACTG-AAATATAAT----TAACGTGTTTATTTGC--GA--A--TA-GGGTGTC---------TTG-----------AG--TGAC--GTCC--ATCACAA-GT---GA-C--TC--TT----CCCAA-T-CGCATA----T-AA-CA----ATGGAATTTT-TT--TT-gaacagttgaataaact
gi|18 : tatagcttattcaactgttgtTCGCGAAT-A---GTAT----GTCCAGAGTGAC--GTCG--GTCACGA-GT---GA-C--Ta
gi|10 : tggtttattcaacagttgtttttcgttactcaggtagtGTCAAGACTGGT--TGCA--GTTACGA-GT---GA-----C--A--------AT-T-C---------T-AA----T-TCCGGAA--AT-TT--TT-CAGTAAG---C-T------G-AACGTAAAA-TAACC-GTCGAATAAA
gi|16 : aaattattcgcgaatgaagtTCAGGACTTATTTGCCAATGTCATTA-GT---GA-C--TT--AT----CCCAT-CGC---TG------AA-TAAC-AAGAAATTTAC-TT--TT-CAGTAA----T-T------A-AAC-----A-CAACA-ATTGAATAAcaatgttttacattttataaatttaa
gi|13 : atAAGAGTGAC--ATCA--GACACAA-GT---GA-C--TC--------TCCAT-T-TA--TG------AA-TAAC-TTGTAAATAAT-GT--TT-CAGTAA----CAA------G-AAA-----A-CAGgcaata
gi|2 : agagtttatctatAT--GTGAT-GTCACGA-GT---GA-CATTG--AG----CGCAG-T-----TG------AA-TAAC-AATGGAATTGT-TG--TT-CAGTAA----C-A------G-AA------A-AAGAATATTGAATTAActcattcatgaataatgagggaattgttttccag
gi|15 : tactgaaaaataatgcaacaaaaacaaacaacttatttgtga--GTCA--CTCATGA-------------C--AC----CCCAT-T-A----G----C-AAATAAC-TTGTGAATTAT-TT--TT-CAGTAA----C-G------A-AAA-----A-CAACT-GTTctatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|18 : atattataatatagaA--GTCACTC-GT---GA-C--CG--AC----GTCAC-T-C---TGGACAT-AC-TATT-C-GCGAACTAC-CT--G---AGTAA----C-G------A-AAA-----A-CAACT-GTTGAATAAAtcttcccattgtggattaatgagggaactatatttcagt
gi|15 : tgg--GTCATGA-GT---GA-C--TC--TT----CCCAT-T-G---TG----G-AT-TAAT-GAGGGAACTAT-AT--TT-CAGT
gi|14 : atattataatatagaaacagttgtttttcgttactgaaaaataattcacaagttatttgctaatggggt--GTCGTGA-GC---GA-C--TC--TT----TCAAG-T-A---CA----G-AA-TATG-GCAGGAATTAT-TT--TT-CAGTA
gi|7 : aaagtgtttgttcaactcttgttttctgatattgaaaaaataatacgcgatttatttgcagatgtgggtTCATTA-TT---GA-C------AC----CCCAT-T-----TG----T-GA--------AGAAATTGTATT--TT-TAGTAA----C-A------G-AA
gi|14 : aactacttttttGA-GT---CG-C--TC--ACGACACCCACAT-C---TG----C-AAATAAA-TCGCGTATTAT-TT--TTTCAATAT----C-A------G-AAA-----A-CAAGA-GTTGAACAAAtataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
gi|11 : aaagtg-GT---GA-C------AA----CCCAT-T-CA--TGAC--T-AA-ACTT-T--TGAACTCT-GT--TT-CAGTTA----C-G------G-AAA-----A-CAACA-GTTGAATAAAtttcaagtacagaatatggcaggaattatttttcagta
gi|19 : tatag-AA-TAAT-TTGTGAATTAT-TT--TA-CAGTAT----CGA------A-AAC-------CAACA-GTTGGATaagcaatgtctatcacaagtggctcttcccattcctgaataatgacggtattatttt
gi|4 : GAGAATAAT-CTATTT-CAGTAA----C-GCAAAACGCAAC-----A-CAACA-GTTGAATAAAggaaaagagcttcacgagtgatgt
gi|20 : aatcaattactgcttattcgcaaagagagcgccacagatgacGAAATTAT-AT--TT-CAGTTA----C-A------A-AAA-----T-CAACA-ATTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|21 : taaataaaagGAATTAT-TA--TC-CAGTAA----C-G------G-AAA-----A-CAACA-GATGAATAAAacgtgctca
gi|9 : atattactcttAATTAT-AT--TT-CAGTTA----C-A------A-AAA-----AACAACA-GTTGAATAActa
gi|17 : tatagc-TT--TT-CAGTGA----C-G------G-TAA-----A-TAACA-ATTGAATAAAaacgtgtttatttgcgaatagggtgtcttgagtgacgtccatcacaagtgactcttcccaatcgcatataacaatggaatttttttta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): AATCAATTACTGACTATTCGCAAAGAGGGCACCACGGATGACGAGAATAATCTAATTTCAGTAACGCACAAGGCAAAACATAGTTGAATAAACTATTTATGGTTATTCGTACATTATAACTGGCATTCATTCTGGTCGGGATGCTCAACGCTCAAATGCCAAACTAACCATTTTCCA
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Unaligned ( gi|12 ): TTAATAAACTATTGTTTGTCTTTAATGAAAAGTAATTTATAAGGTATTCACAAATAGTGTGTCACACATGACATCTCCAATTCCCGAATGACGGTTTATTTTAGAAACGGAAAATATGTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 0000000000000000000000000000000000000000000000000000000000 11111111 22222222 111111
lowQualScore : 777 4 9999 8888 0 2 8 4444444444444444444444444444444444444444444444444444444444 55 777 66 22222222 1 33 44444444 2 33 111111 22 7777777 777777 2 3 8888888
lowQualScore : ... . .... .... . . . .......................................................... .. ... .. ........ . .. ........ . .. ...... .. ....... ...... . . .......
lowQualScore : 888 4 4444 5555 7 1 0 1111111111111111111111111111111111111111111111111111111111 55 888 77 77777777 0 44 00000000 5 22 333333 99 0000000 222222 7 7 7777777
consensus : ACTCTGT---TTTCC-G----TTACTGAAAAATAAT----TCACGAGTT-ATT--C--G--AA--TGGGGTGTCGCGAG-ACTTG------A---G--TCAAGACTGAC--GT--CA--GTCACGAGTGA--C--T--CNTCC-CATT-C-CG-A-A-TA--AC-GAGGGAATTATTT--T-----T-CAGT------AAC-GNAAAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCTGT---TTTCC-G----TTACTGAAAAATAAT----TCACGAGTT-ATT--C--G--NA--TGGGGTGTCGCGAG-ACTTG------A---G--TCAAGACTGAC--GT--CA--GTCACGAGTGA--C--T--CNTCC-CATT-C-TGTA-A-TA--AC-GNGGGAATTATTT--T-----T-CAGT------AAC-GGAAAAC-------AACAGTTGAATAAA
gi|1 : TGT---TTTCT-GGGTATT--TAAAAAATAAT----TTACAAGTT-ATT--C--G--CA--AA------CG-GAG-AGT------------G--TCACGAGTGAT--GG--CA--GTC-TTAATGGT-C--T--CTTTC-AATT-C-C-TA-A-CA--AAAGAGGGAATTATTT--T-----T-CAGA------AAC-GTAA----------AACAGTTGAATAAA
gi|10 : tatttaaccatTCGCGAA----TG------AAGTG--TCAAGACTG----GTTGCA--GTTACGAGTGA--C--A--ATTCT-AATT-C-C----------------GGAA--ATTT--T-----T-CAGTAAGCTGAAC-GTAAAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aaattatTGT---TTTCC-G----TAACTGAAACAGAGT----TCAAAAGTTTAGT--CATG--AA--TGGGTTGTCACAAG--------------------CAA------T--GT--CT--ATCACAAGTGG--C--T--CTTCC-CATTCC-TG-A-A-TA--AT-GACGGTATTATTT--T-----caatgttttacattttataaatttaa
gi|12 : tatagtttattcaactgt--GTCACACATGA--C--A--TCTCC-AATT-C-CCGA-A-TG--AC-GGT----TTATTT--T--------AGA------AAC-GGAAAAT-------
gi|13 : ttaataaactattgtttgtctttaatgaaaagtaatttataaggtattcacaaatagtgtTCTGT---TTTCTTG----TTACTGAAACATTAT----TTACAAGTT-ATT--CATA--AA--TGGAGAGTC------ACTTG------T---G--T-----CTGAT--GT--C-------------A--C--T--CTTCT-CATT-CATG-A-A-TA--AT-GAGGGAATTGTTT--T-----C-CAGtgtataa
gi|14 : agagtttatctaTACTGAAAAATAAT----TCCTGCCAT-ATT--C--------------TGT-------ACTTG------A--------AAGA-------GT--CG--CTCACGA------------CACCCACAT--C-TGCA-AATA--AA-TCGCGTATTATTT--T-----TTCAAT------ATC-AGAAAAC-------AAGAGTTGAACAAA
gi|15 : aaagtgTGT---TTTTC-G----TTACTGAAAAATAAT----TCACAAGTT-ATT--T--GCTAA--TGGGGTGTCA--------TG------A---G--T---GACT--------------------------------CTTCC-CATT-G-TGGA-T-TA--AT-GAGGGAACTATAT--T-----T-CAGT------
gi|16 : atattataatatagaaacagt--TCAGGACTTATTTGC--CAATGTCATTAGTGA--C--T--TATCC-CATCGC-TG-A-A-TA--AC-AAGAAATTTACTT--T-----T-CAGT------AAT-TAAACAC-------AACAATTGAATAA
gi|17 : atTT--T-----T-CAGT------GAC-GGTAAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgA--GTCACTCGTGA--C--CGACGTC---ACT-C-TGGACA-TACTAT-TCGCGAACTACCT--G--------AGT------AAC-GAAAAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|19 : tggTCACTCGTGAAGC--T--CTT-----TT-C-C--A-A-TA--AT-TTGTGAATTATTT--T-----A-CAGT------ATC-GAAAACC-------AACAGTTGGAT
gi|2 : --GTCACGAGTGA--CATT--GAGCG-CAGT---TG-A-A-TA--AC-AATGGAATTGTTG--T-----T-CAGT------AACAGAAAAAG-------AATA-TTGAATTAAtgt
gi|20 : tactgaaaaataatgcaacaaaaacaaacaacttatttgtgaatgtgat--AC-GTGA-AATTATAT--T-----T-CAGT------TAC-AAAAATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagTGT---TTTCC-G----TTACTGGATAATAAT----TCAAGAGTA-ATgctca
gi|21 : atGAATTATTA--T-----C-CAGT------AAC-GGAAAAC-------AACAGATGAATAAAacagatgaataaacta
gi|4 : atattactctt-A-TG--AC-GAG--AATAATCTATT-----T-CAGT------AAC-GCAAAACGCAACACAACAGTTGAATAAActa
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCTGT---TTTCT-A----TTACTGAAAAATTAT----TCACAAGTC-ATT--C--A--TA--TGGGGTGTCGCAAGTACTTGTACATCG---G--TCAAGACTGAT--GT--CA--GTCATGAGTGA--C--T--CATCC-CATT-C-TGTA-A-TA--TT-TAGGGAATTATTT--T-----T-CAGT------AAC-AGAACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : CTGTCACTTTCC-A----TTACTGAAAAATAATGACCTC----GTT-ATTTGC--G--AA--GGGGA----GCAGG-GCCTG------G---GCGTCATGGGTAAC--GT--CA--GTTAAATGTGA---------GTCT-CATT-CGTG-A-A-TA--AC-TCCTGAGTTATTT--T-----T-CAGT------AAC-ATAAAAG-------AACAGTTGAATAAAat
gi|7 : taaatcaaACTTTTT---TTTCT-G----TTACT-AAAAATA---------CAATTT-CTT--C--A--CAAATGGGGTGTCct
gi|7 : aactACT-C-TGCATA-GA--AC-TTGTGAATTATTT--TAATTTT-TAGC------AAC-ATCTAAC-------AACAGTTGAATAAaataatgatataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
gi|9 : aactacttttttttctgttactaaaaatacaatttcttcacaaatggggtgtcaataatgatataatgatT---TTTTT-G----TAACTGAAATATAAT----TAACGTGTTTATTTGC--G--AA--TAGGGTGTC--------TTG------A---G--T-------GAC--GT--CC--ATCACAAGTGA--C--T--CTTCC-CAAT-C--GCATA-TA--AC-AATGGAATTTTTT--T-----T-cctatttattacattttgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AATCAATTACTGACTATTCGCAAAGAGGGCACCACGGATGACGAGAATAATCTAATTTCAGTAACGCACAAGGCAAAACATAGTTGAATAAACTATTTATGGTTATTCGTACATTATAACTGGCATTCATTCTGGTCGGGATGCTCAACGCTCAAATGCCAAACTAACCATTTTCCA
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Alignments
lowQualScore : 33333333 9999999999999999999999999999999999999 11111111 11111 111111111
lowQualScore : 4 777 4 8888 3 7777 1 1 7 77777777 4 55 5555555555555555555555555555555555555 55 888 4 00000000 1 44 3 3 55555 2 2 000000000 666 2 777777 2 1 8888888 8888888
lowQualScore : . ... . .... . .... . . . ........ . .. ..................................... .. ... . ........ . .. . . ..... . . ......... ... . ...... . . ....... .......
lowQualScore : 4 000 0 5555 6 7777 2 0 3 00000000 0 55 6666666666666666666666666666666666666 00 000 1 99999999 0 55 1 1 99999 7 7 222222222 666 2 222222 7 0 7777777 7777777
consensus : ACTCT-GT---TTTCC-G----TTACTGAAAAA-TAAT----TCACGAGTT-ATT--C--G--AATG-GGG--TGTCGCGAG--CTTG------A---G--TCAAGACTGAC--GT--CG--GTCACGAGTGA--C--T--CNTCC-CAT-T-C-C-G-AA-TA-AC-GA---GGGAATTATTT---TT-CAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GT---TTTCC-G----TTACTGAAAAA-TAAT----TCACGAGTT-ATT--C--G--AATG-GGG--TGTCGCGAG-ACTTG------A---G--TCAAGACTGAC--GT--CA--GTCACGAGTGA--C--T--CNTCC-CAT-T-C-C-G-AA-TA-AC-GA---GGGAATTATTT---TT-CAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
gi|1 : T-GT---TTTCT-GGGTATT--TAAAAAA-TAAT----TTACAAGTT-ATT--C--GCAAACG-GAGAGTGTCACGAG--------------------------TGAT--GG--CA--GTC-TTAATGGT-C--T--CTTTC-AAT-T-C-C-T-AA-CA-AAAGA---GGGAATTATTT---TT-CAGA------AAC-GTA-------A----------AACAGTTGAATAAA
gi|10 : tatttaaccatTCGCGAA----TG------AAGTG--TCAAGACTG----GTTGCA--GTTACGAGTGA--C--A--ATTCT-AAT-T-C-C------------------GGAA--ATTT---TT-CAGTAAGCTGAAC-GTA-------AAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aaattatGAACTCTGT---TT-CAGT------TAC-GGA-------AAAC-------AACAGTTGAATAAAcaatgttttacattttataaatttaa
gi|11 : tatagT-GT---TTTCC-G----TAACTGAAACA-GAGT----TCAAAAGTTTAGT--CATG--AATG-GGT--TGTCACAAG--------------------CAA------T--GT--CT--ATCACAAGTGG--C--T--CTTCC-CAT-T-C-CTG-AA-TA-AT-GA---CGGTATTATTT---Taaaagtttagtcatgaatgggttgtcacaagcaatgtctatcacaagtggctcttcccattcctgaataatgacggtattatttt
gi|13 : tatagtttattcaactgtTCT-GT---TTTCTTG----TTACTGAAACA-TTAT----TTACAAGTT-ATT--CATA--AATG-GAG--AGTC------ACTTG------T---G--T-----CTGAT--GT--C-------------A--C--T--CTTCT-CAT-T-CAT-G-AA-TA-AT-GA---GGGAATTGTTT---TC-CAG
gi|14 : agagtttatctaTACTGAAAAA-TAAT----TCCTGCCAT-ATT--C---------------TGT-------ACTTG------A--------AAGA-------GT--CG--CTCACGA------------CACCCACATCT-G-C-A-AA-TA-AA-TC---GCGTATTATTT---TTTCAAT------ATC-AGA-------AAAC-------AAGAGTTGAACAAA
gi|14 : aaagtgACTCTTGT---TTTCT-G----ATATTGAAAAAATAAT----ACGCGATTT-ATTTGC--A--GATGTGGG--TGTCGTGAG-
gi|15 : aaagtgtttgttcaT-GT---TTTTC-G----TTACTGAAAAA-TAAT----TCACAAGTT-ATT--T--GCTAATG-GGG--TGTCA--------TG------A---G--T---GACT--------------------------------CTTCC-CAT-T-G-T-G-GATTA-AT-GA---GGGAACTATAT---TT-CAGT------cgactctttcaagtacagaatatggcaggaattatttttcagta
gi|16 : atattataatatagaaacagt--TCAGGACTTATTTGC--CAATGTCATTAGTGA--C--T--TATCC-CAT-CGC-T-G-AA-TA-AC-AA---GAAATTTACTT---TT-CAGT------AAT-TAA-------ACAC-------AACAATTGAATAA
gi|17 : atTT---TT-CAGT------GAC-GGT-------AAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgA--GTCACTCGTGA--C--CGACGTC---AC-T-C-T-G-GA-CATAC-TATTCGCGAACTACCT---G---AGT------AAC-GAA-------AAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tgg---G--TCCAGAGTGAC--GT--CG--GTCACGAGTGA--C--T--
gi|19 : tggtttattcaacagttgtttttcgttactcaggtagttcgcgaatagtatTCACTCGTGAAGC--T--CTT-----T-T-C-C---AA-TA-AT-TT---GTGAATTATTT---TA-CAGT------ATC-GAA-------AACC-------AACAGTTGGAT
gi|2 : --GTCACGAGTGA--CATT--GAGCG-CAG-T-T---G-AA-TA-AC-AA---TGGAATTGTTG---TT-CAGT------AACAGAA-------AAAG-------AATA-TTGAATTAAtgt
gi|20 : tactgaaaaataatgcaacaaaaacaaacaacttatttgtgaatgtgatGAAATTATAT---TT-CAGT------TAC-AAA-------AATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GT---TTTCC-G----TTACTGGATAA-TAAT----TCAAGAGTA-ATacgtgctca
gi|21 : atGAATTATTA---TC-CAGT------AAC-GGA-------AAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TG-AC-GA---G--AATAATCTAATTT-CAGT------AAC-GCACAAGGCAAAAC-------A-TAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TG-AC-GA---G--AATAATCTAT-TT-CAGT------AAC-GCA-------AAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GT---TTTCT-A----TTACTGAAAAA-TTAT----TCACAAGTC-ATT--C--A--TATG-GGG--TGTCGCAAGTACTTGTACATCG---G--TCAAGACTGAT--GT--CA--GTCATGAGTGA--C--T--CATCC-CAT-T-C-T-GTAA-TA-TT-TA---GGGAATTATTT---TT-CAGT------AAC-AGA-------ACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : CT-GTCACTTTCC-A----TTACTGAAAAA-TAATGACCTC----GTT-ATTTGC--G--AAGG-GGA------GCAGG-GCCTG------G---GCGTCATGGGTAAC--GT--CA--GTTAAATGTGA---------GTCT-CAT-T-CGT-G-AA-TA-AC-TC---CTGAGTTATTT---TT-CAGT------AAC-ATA-------AAAG-------AACAGTTGAATAAAat
gi|7 : taaatcaaACTTT-TT---TTTCT-G----TTACT-AAAAA-TA---------CAATTT-CTT--C--ACAAATG-GGG--TGTCct
gi|9 : aactT---TTTTT-G----TAACTGAAATA-TAAT----TAACGTGTTTATTTGC--G--AATA-GGG--TGTC--------TTG------A---G--T-------GAC--GT--CC--ATCACAAGTGA--C--T--CTTCC-CAA-T-CGC-A-TA-TA-AC-AA---TGGAATTTTTT---TT-aataatgatataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Unaligned ( gi|12 ): TTAATAAACTATTGTTTGTCTTTAATGAAAAGTAATTTATAAGGTATTCACAAATAGTGTGTCACACATGACATCTCCAATTCCCGAATGACGGTTTATTTTAGAAACGGAAAATATGTATAA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 33333333 00000000000000000000000000000000 1111 11111 1111111 1111111
lowQualScore : 4 777 4 8888 4 8888 2 8 77777777 4 66 44444444444444444444444444444444 4444 88 99999 2 0 3 88888 2 444 11 777 777777 3333333 1 0000000
lowQualScore : . ... . .... . .... . . ........ . .. ................................ .... .. ..... . . . ..... . ... .. ... ...... ....... . .......
lowQualScore : 4 000 0 5555 0 5555 1 0 88888888 4 11 99999999999999999999999999999999 4444 55 22222 2 2 3 22222 9 555 11 444 777777 1111111 0 0000000
consensus : ACTCT-GT---TTTCC-G----TTACTGAAAAA-TAAT----TCACGAGTT-ATT--C--G--AATG-GGG--TGTCGC-GAG--C-TG----------G--TC--GACTGACGT--CAGTCACGAGTGA--C--TCTTCCCATT-C-C-G-AA-TAAC-GAGGGAATTATTT---TTCAGT------AAC-------GNAAAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GT---TTTCC-G----TTACTGAAAAA-TAAT----TCACGAGTT-ATT--C--G--AATG-GGG--TGTCGC-GAG--CTTG------A---G--TCAAGACTGACGT--CGGTCACGAGTGA--C--TCNTCCCATT-C-C-G-AA-TAAC-GAGGGAATTATTT---TTCAGT------AAC-------GNAAAAC-------AACAGTTGAATAAA
gi|1 : T-GT---TTTCT-GGGTATT--TAAAAAA-TAAT----TTACAAGTT-ATT--C--GCAAACG-GAGAGTGTCAC-GAG--------------------------TGATGG--CAGTC-TTAATGGT-C--TCTTTCAATT-C-C-T-AA-CAAAAGAGGGAATTATTT---TTCAGA------AAC-------GTAA----------AACAGTTGAATAAA
gi|10 : tatttaaccatTCGC-GAA----TG------AAGTG--TCAAGACTG--GTTGCAGTTACGAGTGA--C--AATTCTAATT-C-C--------------GGAA--ATTT---TTCAGTAAGCTGAAC-------GTAAAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aaattatT-GT---TTTCC-G----TAACTGAAACA-GAGT----TCAAAAGTTTAGT--CATG--AATG-GGT--TGTCAC-AAG--C------------------------AATGT--CTATCACAAGTGG--C--TCTTCCCATT-C-CTG-AA-TAAT-GACGGTATTATTT---Tcaatgttttacattttataaatttaa
gi|13 : tatagtttattcaactgtTCT-GT---TTTCTTG----TTACTGAAACA-TTAT----TTACAAGTT-ATT--CATA--AATG-GAG--AGTC-----A--CTTG------T---G--T-----CTGATGT--C-----------A--C--TCTTCTCATT-CAT-G-AA-TAAT-GAGGGAATTGTTT---TCCAG
gi|14 : agagtttatctaACTCTTGT---TTTCT-G----ATATTGAAAAAATAAT----ACGCGATTT-ATTTGC--A--GATGTGGG--TGTCGT-GAG--C--------------------GACT--CTT-----TCA--AGTA------------CA-------G-AA-TATG-GCAGGAATTATTT---TTCAGT------A
gi|15 : aaagtgtttgttcaT-GT---TTTTC-G----TTACTGAAAAA-TAAT----TCACAAGTT-ATT--T--GCTAATG-GGG--TGTCAT-GAG--------------------------TGAC----------------------TCTTCCCATT-G-T-G-GATTAAT-GAGGGAACTATAT---TTCAGT------
gi|16 : atattataatatagaaacagtGTCATTAGTGA--C--TTATCCCATCGC-T-G-AA-TAAC-AAGAAATTTACTT---TTCAGT------AAT-------TAAACAC-------AACAATTGAATAA
gi|17 : attcaggacttatttgccaatTT---TTCAGT------GAC-------GGTAAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGT------AAC-------GAAAAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tgg---G--TCCAGAGTGACGT--CGGTCACGAGTGA--C--Tcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagttgtttttcgttactcaggtagttcgcgaatagtatTCACTCGTGAAGC--TCTT----TT-C-C---AA-TAAT-TTGTGAATTATTT---TACAGT------ATC-------GAAAACC-------AACAGTTGGAT
gi|2 : GTCACGAGTGA--CATTGAGCGCAGT-T---G-AA-TAAC-AATGGAATTGTTG---TTCAGT------AACA------GAAAAAG-------AATA-TTGAATTAAtgt
gi|20 : tactgaaaaataatgcaacaaaaacaaacaacttatttgtgaatgtgatGAAATTATAT---TTCAGT------TAC-------AAAAATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GT---TTTCC-G----TTACTGGATAA-TAAT----TCAAGAGTA-ATacgtgctca
gi|21 : atGAATTATTA---TCCAGT------AAC-------GGAAAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TGAC-GAG--AATAATCTAATTTCAGT------AACGCACAAGGCAAAAC--------ATAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TGAC-GAG--AATAATCTAT-TTCAGT------AAC-------GCAAAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GT---TTTCT-A----TTACTGAAAAA-TTAT----TCACAAGTC-ATT--C--A--TATG-GGG--TGTCGC-AAGTACTTGTACATCG---G--TCAAGACTGATGT--CAGTCATGAGTGA--C--TCATCCCATT-C-T-GTAA-TATT-TAGGGAATTATTT---TTCAGT------AAC-------AGAACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : CT-GTCACTTTCC-A----TTACTGAAAAA-TAATGACCTC----GTT-ATTTGC--G--AAGG-GGA------GCAGGG--CCTG------G---GCGTCATGGGTAACGT--CAGTTAAATGTGA-------GTCTCATT-CGT-G-AA-TAAC-TCCTGAGTTATTT---TTCAGT------AAC-------ATAAAAG-------AACAGTTGAATAAAat
gi|7 : taaatcaaACTTT-TT---TTTCT-G----TTACT-AAAAA-TA---------CAATTT-CTT--C--ACAAATG-GGG--TGTCct
gi|9 : aactT---TTTTT-G----TAACTGAAATA-TAAT----TAACGTGTTTATTTGC--G--AATA-GGG--TGTC---------TTG------A---G--T-------GACGT--CCATCACAAGTGA--C--TCTTCCCAAT-CGC-A-TA-TAAC-AATGGAATTTTTT---TTaataatgatataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Unaligned ( gi|12 ): TTAATAAACTATTGTTTGTCTTTAATGAAAAGTAATTTATAAGGTATTCACAAATAGTGTGTCACACATGACATCTCCAATTCCCGAATGACGGTTTATTTTAGAAACGGAAAATATGTATAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 11111111111 33333333 33333333333333333333333333333333333 1111111
lowQualScore : 4 33 7777 1 3 55555555555 0 6 88888888 3 44 00000000000000000000000000000000000 444 3 555 77 44 8888888 2 33 666 777777 2 1 9999999 9999999
lowQualScore : . .. .... . . ........... . . ........ . .. ................................... ... . ... .. .. ....... . .. ... ...... . . ....... .......
lowQualScore : 4 88 7777 2 3 88888888888 8 2 00000000 3 66 66666666666666666666666666666666666 333 1 444 33 66 2222222 9 99 999 222222 9 0 3333333 3333333
consensus : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATT--C--GC-AATG-GGG--TGTCGCGAG--C------------------TGACGTCAGTCACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTATTT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATT--C--G--AATG-GGG--TGTCGCGAG--CT--------GGTC--GACTGACGTCAGTCACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTATTT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
gi|1 : T-GTTTTCT-GGGTATT--TAAAAAA-TAATTTA-----------CAAGTT-ATT--C--GCAAACG-GAGAGTGTCACGAG---------------------TGATGGCAGTC-TTA-AT---GGT-CTCT--TTCAATT-C-C-T-AA-CAAAAGAGGGAATTATTT---TTCAGA------AAC-GTA-------A----------AACAGTTGAATAAA
gi|10 : tatttaaccatAATT-ATT--C--GCGAATG-AAG--TGTCAAGA---CT--------GGTT--G--------CAGTTACGA-GT---GA--CAAT--TCTAATT-C-C--------------GGAA--ATTT---TTCAGTAAGCTGAAC-GTA-------AAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aGAACTCTGT---TTCAGT------TAC-GGA-------AAAC-------AACAGTTGAATAAAcaatgttttacattttataaatttaa
gi|11 : tatagT-GTTTTCC-G----TAACTGAAACA-GAGTTCA-----------AAAGTTTAGT--CATG--AATG-GGT--TGTCACAAG--C-------------------AATGTCTATCACAA-GT---GG--CTCT--TCCCATT-C-CTG-AA-TAAT-GACGGTATTATTT---Taaaagtttagtcatgaatgggttgtcacaagcaatgtctatcacaagtggctcttcccattcctgaataatgacggtattatttt
gi|13 : tatagtttattcaactgtTCT-GTTTTCTTG----TTACTGAAACA-TTATTTA-----------CAAGTT-ATT--CATA--AATG-GAG--AGTC----A--CT--------TGT---GTCTGATGTC---------------A--CTCT--TCTCATT-CAT-G-AA-TAAT-GAGGGAATTGTTT---TCCAG
gi|14 : agagtttatctaACTCTTGTTTTCT-G----ATATTGAAAAAATAATACG-----------CGATTT-ATTTGC--A--GATGTGGG--TGTCGTGAG--C---------------------------------------GA--CTCT--TTCAAGTAC-A-G-AA-TATG-GCAGGAATTATTT---TTCAGT------A
gi|15 : aaagtgtttgttcaT-GTTTTTC-G----TTACTGAAAAA-TAATTCA-----------CAAGTT-ATT--T--GCTAATG-GGG--T-------------------------------------GTCATGA-GT---GA--CTCT--TCCCATT-G-T-G-GATTAAT-GAGGGAACTATAT---TTCAGT------
gi|16 : atattataatatagaaacagtGTCATTA-GT---GA--CTTA--TCCCATCGC-T-G-AA-TAAC-AAGAAATTTACTT---TTCAGT------AAT-TAA-------ACAC-------AACAATTGAATAA
gi|17 : attcaggacttatttgccaatTT---TTCAGT------GAC-GGT-------AAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGT------AAC-GAA-------AAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tggT-GTTTTTC-G----TTACTCAGG---TAGTTCG-----------CGA----------------ATA-GTA--TGTCCAGAG---------------------TGACGTCGGTCACGA-GT---GA--CTcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagtTCACTC-GT---GAAGCTCT--T----TT-C-C---AA-TAAT-TTGTGAATTATTT---TACAGT------ATC-GAA-------AACC-------AACAGTTGGAT
gi|2 : TACTGAAAAA-TAATGCAACAAAAACAAACAACTT-ATT--T--GTGAATG-TGA--TGTCACGAG---------------------TGACATT------GA-GC---G------------CAGT-T---G-AA-TAAC-AATGGAATTGTTG---TTCAGT------AACAGAA-------AAAG-------AATA-TTGAATTAAtgt
gi|20 : GAAATTATAT---TTCAGT------TAC-AAA-------AATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GTTTTCC-G----TTACTGGATAA-TAATTCA-----------AGAGTA-ATacgtgctca
gi|21 : atGAATTATTA---TCCAGT------AAC-GGA-------AAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TGAC-GAG--AATAATCTAATTTCAGT------AAC-GCACAAGGCAAAAC-------A-TAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TGAC-GAG--AATAATCTAT-TTCAGT------AAC-GCA-------AAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GTTTTCT-A----TTACTGAAAAA-TTATTCA-----------CAAGTC-ATT--C--A--TATG-GGG--TGTCGCAAGTACTTGTACATCGGTCAAGACTGATGTCAGTCATGA-GT---GA--CTCA--TCCCATT-C-T-GTAA-TATT-TAGGGAATTATTT---TTCAGT------AAC-AGA-------ACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : TTTTAT-G----TTACTGAAAAA-TAACTCA-----------GGAGTT-ATT--CACG--AATG-AGA--C-TCACA-----T----------TT--AACTGACGTTACCCATGACGCCCAGG--CCCTGCTCCCCTT-CGC-A-AA-TAAC-GAGGTCATTATTT---TTCAGT------AAT-GGA-------AAGT-------GACAGTTGAat
gi|7 : taaaACTTT-TTTTTCT-G----TTACT-AAAAA-TA----------------CAATTT-CTT--C--ACAAATG-GGG--TGTCgaacagttgaataaact
gi|9 : aactTTTTTT-G----TAACTGAAATA-TAATTAA-----------CGTGTTTATTTGC--G--AATA-GGG--TGTCTTGAG---------------------TGACGTCCATCACAA-GT---GA--CTCT--TCCCAAT-CGC-A-TA-TAAC-AATGGAATTTTTT---TTaataatgatataatgatactctgcatagaacttgtgaattattttaatttttagcaacatctaacaacagttgaataacctatttattacattttgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Unaligned ( gi|12 ): TTAATAAACTATTGTTTGTCTTTAATGAAAAGTAATTTATAAGGTATTCACAAATAGTGTGTCACACATGACATCTCCAATTCCCGAATGACGGTTTATTTTAGAAACGGAAAATATGTATAA
Alignments
lowQualScore : 11111111111 2 66666666666666666666666666666666666666666666666 11111111
lowQualScore : 4 33 7777 3 55555555555 6 3 3 3 3 555 77777777777777777777777777777777777777777777777 2 555 66 44 66666666 2 33 1 55555 666 777777 2 1 8888888 8888888
lowQualScore : . .. .... . ........... . . . . . ... ............................................... . ... .. .. ........ . .. . ..... ... ...... . . ....... .......
lowQualScore : 4 88 7777 3 88888888888 2 3 3 3 3 888 88888888888888888888888888888888888888888888888 9 000 88 22 99999999 7 00 9 33333 666 777777 7 0 7777777 7777777
consensus : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGA-A-TG-GG---GTGTCAC--G---AG--------------------CTGACGT--C-GTCACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGTAA------C-GNA-------AAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGC-A-A-TG-GG---GTGTCGC--G---AG--------------------CTGACGT--CAGTCACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGTAA------C-GNA-------AAAC-------AACAGTTGAATAAA
gi|1 : T-GTTTTCT-GGGTATT--TAAAAAA-TAATTTA-----------CAAGTT-ATTCGC-A-A-AC-GGAGAGTGTCAC--G---AG---------------------TGATGG--CAGTC-TTA-AT---GGT-CTCT--TTCAATT-C-C-T-AA-CAAAAGAGGGAATTAT-----TT---TTCAGAAA------C-GTA-------A----------AACAGTTGAATAAA
gi|10 : tatttaaccatAATT-ATTCGCGA-A-TG-AA---GTGTCAA--G---A---------------------CTG--GTTGCAGTTACGA-GT---GA--CAAT--TCTAATT-C-C-G-------------GAA--AT-----TT---TTCAGTAAGCTGAAC-GTA-------AAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aGAACTCT-----GT---TTCAGTTA------C-GGA-------AAAC-------AACAGTTGAATAAAcaatgttttacattttataaatttaa
gi|11 : tatagT-GTTTTCC-G----TAACTGAAACA-GAGTTCA-----------AAAGTTTAGTCATGA-A-TG-GG---TTGTCAC--A---AG--------------------C-AATGT--CTATCACAA-GT---GG--CTCT--TCCCATT-C-CTG-AA-TAAT-GACGGTATTAT-----TT---Taaaagtttagtcatgaatgggttgtcacaagcaatgtctatcacaagtggctcttcccattcctgaataatgacggtattatttt
gi|13 : tatagtttattcaactgtTCT-GTTTTCTTG----TTACTGAAACA-TTATTTA-----------CAAGTT-ATTCATAA-A-TG-GA---GAGTCACTTG---TGT-------------------CTGATGT--C---------------A--CTCT--TCTCATT-CAT-G-AA-TAAT-GAGGGAATTGT-----TT---TCCAG
gi|14 : agagtttatctaACTCTTGTTTTCT-G----ATATTGAAAAAATAATACG-----------CGATTT-ATTTGC-AGA-TGTGG---GTGTCGT--G---AG--------------------C-----------------------GA--CTCT--TTCAAGTAC-A-G-AA-TATG-GCAGGAATTAT-----TT---TTCAGTA
gi|15 : aaagtgtttgttcaT-GTTTTTC-G----TTACTGAAAAA-TAATTCA-----------CAAGTT-ATTTGCTA-A-TG-GG---GT--------------------------------------------GTCATGA-GT---GA--CTCT--TCCCATT-G-T-G-GATTAAT-GAGGGAACTAT-----AT---TTCAGT
gi|16 : atattataatatagaaacagtGTCATTA-GT---GA--CTTA--TCCCATCGC-T-G-AA-TAAC-AAGAAATTTAC-----TT---TTCAGTAA------T-TAA-------ACAC-------AACAATTGAATAA
gi|17 : attcaggacttatttgccaat-----TT---TTCAGTGA------C-GGT-------AAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGTAA------C-GAA-------AAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tggT-GTTTTTC-G----TTACT--CAGG-TAGTTCG-----------CG------------A-A-TA-GT---ATGTCCA--G---AG---------------------TGACGT--CGGTCACGA-GT---GA--CTcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagtTCACTC-GT---GAAGCTCT--T----TT-C-C---AA-TAAT-TTGTGAATTAT-----TT---TACAGTAT------C-GAA-------AACC-------AACAGTTGGAT
gi|2 : TACTGAAAAA-TAATGCAACAAAAACAAACAACTT-ATTTGTGA-A-TG-TG---ATGTCAC--G---AG---------------------TGACAT--T------GA-GC---G------------CAGT-T---G-AA-TAAC-AATGGAATTGT-----TG---TTCAGTAA------CAGAA-------AAAG-------AATA-TTGAATTAAtgt
gi|20 : GAAATTAT-----AT---TTCAGTTA------C-AAA-------AATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GTTTTCC-G----TTACTGGATAA-TAATTCA-----------AGAGTA-ATacgtgctca
gi|21 : atGAATTAT-----TA---TCCAGTAA------C-GGA-------AAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TGAC-GAG--AATAAT-----CTAATTTCAGTAA------C-GCACAAGGCAAAAC-------A-TAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TGAC-GAG--AATAAT-----CTAT-TTCAGTAA------C-GCA-------AAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GTTTTCT-A----TTACTGAAAAA-TTATTCA-----------CAAGTC-ATTCAT-A---TG-GG---GTGTCGC--A---AGTACTTGTACATCGGTCAAGACTGATGT--CAGTCATGA-GT---GA--CTCA--TCCCATT-C-T-GTAA-TATT-TAGGGAATTAT-----TT---TTCAGTAA------C-AGA-------ACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : TTTTAT-G----TTACTGAAAAA-TAACTCA-----------GGAGTT-ATTCACGA-A-TG-AG---AC-TCAC--ATTTAA--------------------CTGACGT--TACCCATGACGCCCAGG--CCCTGCTCCCCTT-CGC-A-AA-TAAC-GAGGTCATTAT-----TT---TTCAGTAA------T-GGA-------AAGT-------GACAGTTGAat
gi|7 : taaaACTTT-TTTTTCT-G----TTACT-AAAAA-TA----------------CAATTT-CTTCAC-A-AATG-GG---GTGTCAA--T---AA---------------------TGATAT----------A-AT---GA--TACT--CTGCAT---------A-GAAC-TTGTGAATTATTTTAATT---TTTAGCAA------C-ATC-------TAAC-------AACAGTTGAATAAgaacagttgaataaact
gi|9 : aactTTTTTT-G----TAACTGAAATA-TAATTAA-----------CGTGTTTATTTGCGA-A-TA-GG---GTGTCTT--G---AG---------------------TGACGT--CCATCACAA-GT---GA--CTCT--TCCCAAT-CGC-A-TA-TAAC-AATGGAATTTT-----TT---TTcctatttattacattttgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Unaligned ( gi|12 ): TTAATAAACTATTGTTTGTCTTTAATGAAAAGTAATTTATAAGGTATTCACAAATAGTGTGTCACACATGACATCTCCAATTCCCGAATGACGGTTTATTTTAGAAACGGAAAATATGTATAA
Alignments
lowQualScore : 11111111111 7777777777777777777777777777777777777777777777777 1111111
lowQualScore : 4 3 7777 3 44444444444 1 5 1 3 44 2222222222222222222222222222222222222222222222222 444 66 33 9999999 2 2 2 55555 666 666666 2 1 8888888 8888888
lowQualScore : . . .... . ........... . . . . .. ................................................. ... .. .. ....... . . . ..... ... ...... . . ....... .......
lowQualScore : 0 3 1111 1 66666666666 1 7 9 1 22 2222222222222222222222222222222222222222222222222 777 33 99 7777777 5 5 7 33333 666 888888 7 0 7777777 7777777
consensus : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCAC--G---AG--------------------CTGA-CGTC-G-TC-ACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCAC--G---AG--------------------CTGA-CGTC-G-TC-ACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
gi|1 : T-GTTTTCT-GGGTATT--TAAAAAA-TAATTTA-----------CAAGTT-ATTCGCAAACG-GAGAGTGTCAC--G---AG---------------------TGA-TGGCAG-TC--TTA-AT---GGT-CTCT--TTCAATT-C-C-T-AA-CAAAAGAGGGAATTAT-----TT---TTCAGA------AAC-GTA-------A----------AACAGTTGAATAAA
gi|10 : tatttaaccatAATT-ATTCGCGAATG-AAG--TGTCAA--G---A---------------------CTGGTTGCA-G-TT-ACGA-GT---GA--CAAT--TCTAATT-C-C--------------GGAA--AT-----TT---TTCAGTAAGCTGAAC-GTA-------AAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aT-GTTTTCC-G----TAACTGAAACA-GAGTTCA-----------AAAGTTTAGTCATGAATG-GGT--TGTCAC--A---AG--------------------C-AA-TGTCTA-TC-ACAA-GT---GG--CTCT--TCCCATT-C-CTG-AA-TAAT-GACGGTATTAT-----TT---Tcaatgttttacattttataaatttaa
gi|12 : tatagtttattcaactgtT-GTTTGTC-T----TTAATGAAAAG-TAATTTA-----------TAAGGT-ATTCACAAATA-GTG--TGTCAC------AC--------------------ATGA-CATC--------------------------TCCAATTCC-C-G-AA-TGAC-GGT----TTAT-----TT---T--AGA------AAC-GGA-------AAAT-------
gi|13 : ttaataaactatTCT-GTTTTCTTG----TTACTGAAACA-TTATTTA-----------CAAGTT-ATTCATAAATG-GAG--AGTCACTTG---TGT-------------------CTGA-TGTC-----------------A--CTCT--TCTCATT-CAT-G-AA-TAAT-GAGGGAATTGT-----TT---TCCAGtgtataa
gi|14 : agagtttatctaACTCTTGTTTTCT-G----ATATTGAAAAAATAATACG-----------CGATTT-ATTTGCAGATGTGGG--TGTCGT--G---AG--------------------C------------------------GA--CTCT--TTCAAGTAC-A-G-AA-TATG-GCAGGAATTAT-----TT---TTCAGT------A
gi|15 : aaagtgtttgttcaT-GTTTTTC-G----TTACTGAAAAA-TAATTCA-----------CAAGTT-ATTTGCTAATG-GGG--T-------------------------------------------G-TC-ATGA-GT---GA--CTCT--TCCCATT-G-T-G-GATTAAT-GAGGGAACTAT-----AT---TTCAGT------
gi|16 : atattataatatagaaacagt-G-TC-ATTA-GT---GA--CTTA--TCCCATCGC-T-G-AA-TAAC-AAGAAATTTAC-----TT---TTCAGT------AAT-TAA-------ACAC-------AACAATTGAATAA
gi|17 : attcaggacttatttgccaat-----TT---TTCAGT------GAC-GGT-------AAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGT------AAC-GAA-------AAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tggT-GTTTTTC-G----TTACT-------------------------CAGGTA-GTTCGCGAATA-GTA--TGTCCA--G---AG---------------------TGA-CGTC-GGTC-ACGA-GT---GA--CTcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagtC-A-TC-ACTC-GT---GAAGCTCT--T----TT-C-C---AA-TAAT-TTGTGAATTAT-----TT---TACAGT------ATC-GAA-------AACC-------AACAGTTGGAT
gi|2 : TACTGAAAAA-TAATGCAACAAAAACAAACAACTT-ATTTGTGAATG-TGA--TGTCAC--G---AG---------------------TGA-CATT-G-------A-GC---G------------CAGT-T---G-AA-TAAC-AATGGAATTGT-----TG---TTCAGT------AACAGAA-------AAAG-------AATA-TTGAATTAAt
gi|20 : GAAATTAT-----AT---TTCAGT------TAC-AAA-------AATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GTTTTCC-G----TTACTGGATAA-TAATTCA-----------AGAGTA-ATacgtgctca
gi|21 : atGAATTAT-----TA---TCCAGT------AAC-GGA-------AAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TGAC-GAG--AATAAT-----CTAATTTCAGT------AAC-GCACAAGGCAAAAC-------A-TAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TGAC-GAG--AATAAT-----CTAT-TTCAGT------AAC-GCA-------AAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GTTTTCT-A----TTACTGAAAAA-TTATTCA-----------CAAGTC-ATTCAT--ATG-GGG--TGTCGC--A---AGTACTTGTACATCGGTCAAGACTGA-TGTCAG-TC-ATGA-GT---GA--CTCA--TCCCATT-C-T-GTAA-TATT-TAGGGAATTAT-----TT---TTCAGT------AAC-AGA-------ACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : TTTTAT-G----TTACTGAAAAA-TAACTCA-----------GGAGTT-ATTCACGAATG-AGA--C-TCAC--ATTTAA--------------------CTGA-CGTT-A-CCCATGACGCCCAGG--CCCTGCTCCCCTT-CGC-A-AA-TAAC-GAGGTCATTAT-----TT---TTCAGT------AAT-GGA-------AAGT-------GACAGTTGAat
gi|7 : taaaACTTT-TTTTTCT-G----TTACT-AAAAA-TA----------------CAATTT-CTTCACAAATG-GGG--TGTCAA--T---AA---------------------TGA-TAT----------A-AT---GA--TACT--CTGCAT---------A-GAAC-TTGTGAATTATTTTAATT---TTTAGC------AAC-ATC-------TAAC-------AACAGTTGAATAAgaacagttgaataaact
gi|9 : aactTTTTTT-G----TAACTGAAATA-TAATTAA-----------CGTGTTTATTTGCGAATA-GGG--TGTCTT--G---AG---------------------TGA-CGTCCA-TC-ACAA-GT---GA--CTCT--TCCCAAT-CGC-A-TA-TAAC-AATGGAATTTT-----TT---TTcctatttattacattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Alignments
lowQualScore : 11111111111 7777777777777777777777777777777777777777777777777 1111111
lowQualScore : 4 3 7777 3 44444444444 1 5 1 3 44 2222222222222222222222222222222222222222222222222 444 66 33 9999999 2 2 2 55555 666 666666 2 1 8888888 8888888
lowQualScore : . . .... . ........... . . . . .. ................................................. ... .. .. ....... . . . ..... ... ...... . . ....... .......
lowQualScore : 0 3 1111 1 66666666666 1 7 9 1 22 2222222222222222222222222222222222222222222222222 777 33 99 7777777 5 5 7 33333 666 888888 7 0 7777777 7777777
consensus : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCAC--G---AG--------------------CTGA-CGTC-G-TC-ACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCAC--G---AG--------------------CTGA-CGTC-G-TC-ACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
gi|1 : T-GTTTTCT-GGGTATT--TAAAAAA-TAATTTA-----------CAAGTT-ATTCGCAAACG-GAGAGTGTCAC--G---AG---------------------TGA-TGGCAG-TC--TTA-AT---GGT-CTCT--TTCAATT-C-C-T-AA-CAAAAGAGGGAATTAT-----TT---TTCAGA------AAC-GTA-------A----------AACAGTTGAATAAA
gi|10 : tatttaaccatAATT-ATTCGCGAATG-AAG--TGTCAA--G---A---------------------CTGGTTGCA-G-TT-ACGA-GT---GA--CAAT--TCTAATT-C-C--------------GGAA--AT-----TT---TTCAGTAAGCTGAAC-GTA-------AAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aT-GTTTTCC-G----TAACTGAAACA-GAGTTCA-----------AAAGTTTAGTCATGAATG-GGT--TGTCAC--A---AG--------------------C-AA-TGTCTA-TC-ACAA-GT---GG--CTCT--TCCCATT-C-CTG-AA-TAAT-GACGGTATTAT-----TT---Tcaatgttttacattttataaatttaa
gi|12 : tatagtttattcaactgtT-GTTTGTC-T----TTAATGAAAAG-TAATTTA-----------TAAGGT-ATTCACAAATA-GTG--TGTCAC------AC--------------------ATGA-CATC--------------------------TCCAATTCC-C-G-AA-TGAC-GGT----TTAT-----TT---T--AGA------AAC-GGA-------AAAT-------
gi|13 : ttaataaactatTCT-GTTTTCTTG----TTACTGAAACA-TTATTTA-----------CAAGTT-ATTCATAAATG-GAG--AGTCACTTG---TGT-------------------CTGA-TGTC-----------------A--CTCT--TCTCATT-CAT-G-AA-TAAT-GAGGGAATTGT-----TT---TCCAGtgtataa
gi|14 : agagtttatctaACTCTTGTTTTCT-G----ATATTGAAAAAATAATACG-----------CGATTT-ATTTGCAGATGTGGG--TGTCGT--G---AG--------------------C------------------------GA--CTCT--TTCAAGTAC-A-G-AA-TATG-GCAGGAATTAT-----TT---TTCAGT------A
gi|15 : aaagtgtttgttcaT-GTTTTTC-G----TTACTGAAAAA-TAATTCA-----------CAAGTT-ATTTGCTAATG-GGG--T-------------------------------------------G-TC-ATGA-GT---GA--CTCT--TCCCATT-G-T-G-GATTAAT-GAGGGAACTAT-----AT---TTCAGT------
gi|16 : atattataatatagaaacagt-G-TC-ATTA-GT---GA--CTTA--TCCCATCGC-T-G-AA-TAAC-AAGAAATTTAC-----TT---TTCAGT------AAT-TAA-------ACAC-------AACAATTGAATAA
gi|17 : attcaggacttatttgccaat-----TT---TTCAGT------GAC-GGT-------AAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGT------AAC-GAA-------AAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tggT-GTTTTTC-G----TTACT-------------------------CAGGTA-GTTCGCGAATA-GTA--TGTCCA--G---AG---------------------TGA-CGTC-GGTC-ACGA-GT---GA--CTcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagtC-A-TC-ACTC-GT---GAAGCTCT--T----TT-C-C---AA-TAAT-TTGTGAATTAT-----TT---TACAGT------ATC-GAA-------AACC-------AACAGTTGGAT
gi|2 : TACTGAAAAA-TAATGCAACAAAAACAAACAACTT-ATTTGTGAATG-TGA--TGTCAC--G---AG---------------------TGA-CATT-G-------A-GC---G------------CAGT-T---G-AA-TAAC-AATGGAATTGT-----TG---TTCAGT------AACAGAA-------AAAG-------AATA-TTGAATTAAt
gi|20 : GAAATTAT-----AT---TTCAGT------TAC-AAA-------AATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GTTTTCC-G----TTACTGGATAA-TAATTCA-----------AGAGTA-ATacgtgctca
gi|21 : atGAATTAT-----TA---TCCAGT------AAC-GGA-------AAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactctt-C-G-GA-TGAC-GAG--AATAAT-----CTAATTTCAGT------AAC-GCACAAGGCAAAAC-------A-TAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaA-TGAC-GAG--AATAAT-----CTAT-TTCAGT------AAC-GCA-------AAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GTTTTCT-A----TTACTGAAAAA-TTATTCA-----------CAAGTC-ATTCAT--ATG-GGG--TGTCGC--A---AGTACTTGTACATCGGTCAAGACTGA-TGTCAG-TC-ATGA-GT---GA--CTCA--TCCCATT-C-T-GTAA-TATT-TAGGGAATTAT-----TT---TTCAGT------AAC-AGA-------ACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : TTTTAT-G----TTACTGAAAAA-TAACTCA-----------GGAGTT-ATTCACGAATG-AGA--C-TCAC--ATTTAA--------------------CTGA-CGTT-A-CCCATGACGCCCAGG--CCCTGCTCCCCTT-CGC-A-AA-TAAC-GAGGTCATTAT-----TT---TTCAGT------AAT-GGA-------AAGT-------GACAGTTGAat
gi|7 : taaaACTTT-TTTTTCT-G----TTACT-AAAAA-TA----------------CAATTT-CTTCACAAATG-GGG--TGTCAA--T---AA---------------------TGA-TAT----------A-AT---GA--TACT--CTGCAT---------A-GAAC-TTGTGAATTATTTTAATT---TTTAGC------AAC-ATC-------TAAC-------AACAGTTGAATAAgaacagttgaataaact
gi|9 : aactTTTTTT-G----TAACTGAAATA-TAATTAA-----------CGTGTTTATTTGCGAATA-GGG--TGTCTT--G---AG---------------------TGA-CGTCCA-TC-ACAA-GT---GA--CTCT--TCCCAAT-CGC-A-TA-TAAC-AATGGAATTTT-----TT---TTcctatttattacattttgta
blockSeqs : T T . A ACAAAAACAAA A T G T . CAAGTACTTGTACATCGGTCAAGACTGATGTCAGTCATGA CCA AG GC CCTG T . G TTTAA AAT AAGCTG A T CAAGGCA GCAACAC
blockSeqs : . . . . . A T G . . CATTTAACTGACGTTACCCATGAC . . . CCCG . . G . AT . . G . .
blockSeqs : . . . . . A . A . . AGACTGGTTGCAGTTACGA . . . CATG . . G . . . . A . .
blockSeqs : . . . . . G . A . . CAAGCAATGTCTATCACAA . . . ACAG . . G . . . . G . .
blockSeqs : . . . . . A . A . . AGAGTGACGTCGGTCACGA . . . GCTG . . G . . . . A . .
blockSeqs : . . . . . A . T . . TGAGTGACGTCCATCACAA . . . CTGT . . A . . . . A . .
blockSeqs : . . . . . A . G . . CTTGTGTCTGATGTC . . . CGCA . . T . . . . A . .
blockSeqs : . . . . . G . G . . CGAGTGACATTGA . . . CGCA . . G . . . . A . .
blockSeqs : . . . . . A . G . . CACATGACATC . . . GTG . . G . . . . G . .
blockSeqs : . . . . G . A . . ATAATGATATA . . . CC . . G . . . . C . .
blockSeqs : . . . . A . G . . GTCATGA . . . CC . . G . . . . C . .
blockSeqs : . . G . . . . TGAGC . . . TG . . T . . . . G . .
blockSeqs : . . . . . . . G . . . . G . .
blockSeqs : . . . . . . . . . T . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : **** ** NGAGTGACGTCTCACGA******************************** ** CCCG***
originalCons : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCAC--G---AG--------------------CTGA-CGTC-G-TC-ACGA-GT---GA--CTCT--TCCCATT-C-C-G-AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
finalCons : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGTCANGAGTGACGTCTCACGA--------------------------------GT---GA--CTCT--TCCCATTCCCG---AA-TAAC-GAGGGAATTAT-----TT---TTCAGT------AAC-GNA-------AAAC-------AACAGTTGAATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC
Alignments
lowQualScore : 11111111111 666666666666666666666666666666666666666666666666666666666 111 1111111
lowQualScore : 4 3 7777 3 33333333333 0 5 2 2 33 999999999999999999999999999999999999999999999999999999999 444 33 33 0 000 2 55555 666 666666 1111111 1 8888888
lowQualScore : . . .... . ........... . . . . .. ......................................................... ... .. .. . ... . ..... ... ...... ....... . .......
lowQualScore : 0 3 1111 1 66666666666 3 3 9 9 99 222222222222222222222222222222222222222222222222222222222 777 77 99 6 666 7 33333 666 888888 3333333 0 7777777
consensus : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGT---------------------CACG----AGTGACG----T--C----T--CACGA-GT---GA--CTCT--TCCCATTCCCGAATAACGAGGGAATTAT-----TT---TTCAGT------AAC-------GNAAAAC-------AACAGTTGAATAAA
Reference ( family-378 ) : ACTCT-GTTTTCC-G----TTACTGAAAAA-TAATTCA-----------CGAGTT-ATTCGCGAATG-GGG--TGT---------------------CANG----AGTGACG----T--C----T--CACGA-GT---GA--CTCT--TCCCATTCCCGAATAACGAGGGAATTAT-----TT---TTCAGT------AAC-------GNAAAAC-------AACAGTTGAATAAA
gi|1 : T-GTTTTCT-GGGTATT--TAAAAAA-TAATTTA-----------CAAGTT-ATTCGCAAACG-GAGAGTGT---------------------CACG----AGTGATGGCAGT--C----T--TAATG-GT-------CTCT--TTCAATTCCTAACAAAAGAGGGAATTAT-----TT---TTCAGA------AAC-------GTAA----------AACAGTTGAATAAA
gi|10 : tatttaaccatAATT-ATTCGCGAATG-AAG--TGT---------------------CAAG----ACTG--G----T--TGCAGT--TACGA-GT---GA--CAAT--TCTAATTCC-----------GGAA--AT-----TT---TTCAGTAAGCTGAAC-------GTAAAAT-------AACCGTCGAATAAActatttatttcaatttgtaatttaaaaatacattttatttttattgaattccaatttccaacactgaaatacgcaaggtttaaccattctc
gi|11 : aT-GTTTTCC-G----TAACTGAAACA-GAGTTCA-----------AAAGTTTAGTCATGAATG-GGT--TGT---------------------CACA----AGCAATG----T--C----TATCACAA-GT---GG--CTCT--TCCCATTCCTGAATAATGACGGTATTAT-----TT---Tcaatgttttacattttataaatttaa
gi|12 : tatagtttattcaactgtT-GTTTGTC-T----TTAATGAAAAG-TAATTTA-----------TAAGGT-ATTCACAAATA-GTG--TGT---------------------CACA----CATGACA----T--C----T--C----------------------CAATTCCCGAATGACGGT----TTAT-----TT---T--AGA------AAC-------GGAAAAT-------
gi|13 : ttaataaactatTCT-GTTTTCTTG----TTACTGAAACA-TTATTTA-----------CAAGTT-ATTCATAAATG-GAG--AGT---------------------CACT----TGTG-------T--C----T-----GATGT---CA--CTCT--TCTCATTCATGAATAATGAGGGAATTGT-----TT---TCCAGtgtataa
gi|14 : agagtttatctaACTCTTGTTTTCT-G----ATATTGAAAAAATAATACG-----------CGATTT-ATTTGCAGATGTGGG--TGT---------------------C-------------G----T-------------GA-GC---GA--CTCT--TTCAAGTACAGAATATGGCAGGAATTAT-----TT---TTCAGT------A
gi|15 : aaagtgtttgttcaT-GTTTTTC-G----TTACTGAAAAA-TAATTCA-----------CAAGTT-ATTTGCTAATG-GGG--TGT---------------------CAT------------------------------GA-GT---GA--CTCT--TCCCATTGTGGATTAATGAGGGAACTAT-----AT---TTCAGT------
gi|16 : atattataatatagaaacagtATTCA-----------GGACTT-ATTTGCCAATG---------------------------------------------------------T--CATTA-GT---GA--CTTA--TCCCATCGCTGAATAACAAGAAATTTAC-----TT---TTCAGT------AAT-------TAAACAC-------AACAATTGAATAA
gi|17 : -----TT---TTCAGT------GAC-------GGTAAAT-------AACAATTGAATAAAgcaata
gi|18 : attcaacagttgAGT------AAC-------GAAAAAC-------AACTGTTGAATAAActatttatagcatttagtgtactaaaactgacactc
gi|18 : tggT-GTTTTTC-G----TTACT-------------------------CAGGTA-GTTCGCGAATA-GTA--TGT---------------------CCAG----AGTGACG----T--CGG--T--CACGA-GT---GA--CTcaggtagttcgcgaatagtatgtccagagtgacgtcggtcacgagtgact
gi|19 : tggtttattcaacagt----T--CACTC-GT---GAAGCTCT--T----TTCC--AATAATTTGTGAATTAT-----TT---TACAGT------ATC-------GAAAACC-------AACAGTTGGAT
gi|2 : TACTGAAAAA-TAATGCAACAAAAACAAACAACTT-ATTTGTGAATG-TGA--TGT---------------------CACG----AGTGACA----T------------TGA-GC---G------------CAGT--TGAATAACAATGGAATTGT-----TG---TTCAGT------AACA------GAAAAAG-------AATA-TTGAATTAAtgt
gi|20 : GAAATTAT-----AT---TTCAGT------TAC-------AAAAATC-------AACAATTGAATAAActatttataaaatttcataaaataaaactgatattaaacttttatccaattatggttttccaacactaacatatacactgttagactaaccattct
gi|21 : taaataaaagT-GTTTTCC-G----TTACTGGATAA-TAATTCA-----------AGAGTA-ATacgtgctca
gi|21 : atGAATTAT-----TA---TCCAGT------AAC-------GGAAAAC-------AACAGATGAATAAAacagatgaataaacta
gi|3 : atattactcttCGGATGACGAG--AATAAT-----CTAATTTCAGT------AACGCACAAGGCAAAAC--------ATAGTTGAATAAActa
gi|4 : aatcaattactgactattcgcaaagagggcaccaATGACGAG--AATAAT-----CTAT-TTCAGT------AAC-------GCAAAACGCAACACAACAGTTGAATAAActatttatggttattcgtacattataactggcattcattctggtcgggatgctcaacgctcaaatgccaaactaaccattttcca
gi|5 : aatcaattactgcttattcgcaaagagagcgccacagACTCT-GTTTTCT-A----TTACTGAAAAA-TTATTCA-----------CAAGTC-ATTCAT--ATG-GGG--TGTCGCAAGTACTTGTACATCGGTCAAG----ACTGATG----T--CAG--T--CATGA-GT---GA--CTCA--TCCCATTCTGTAATATTTAGGGAATTAT-----TT---TTCAGT------AAC-------AGAACAC-------AGCAGTTGAATAAActgtttatggttattcgtacattgaaactggcattcattttggtcgaaatgctcaacgctccaatacaaaactaacca
gi|6 : TTTTAT-G----TTACTGAAAAA-TAACTCA-----------GGAGTT-ATTCACGAATG-AGA--C-T---------------------CACATTTAACTGACG----TTAC----C--CATGACGCCCAGG--CCCTGCTCCCCTTCGCAAATAACGAGGTCATTAT-----TT---TTCAGT------AAT-------GGAAAGT-------GACAGTTGAat
gi|7 : taaaACTTT-TTTTTCT-G----TTACT-AAAAA-TA----------------CAATTT-CTTCACAAATG-GGG--TGT---------------------CAAT----AATGATA----T--------------A-AT---GA--TACT--CTGCAT------AGAACTTGTGAATTATTTTAATT---TTTAGC------AAC-------ATCTAAC-------AACAGTTGAATAAgaacagttgaataaact
gi|9 : aactTTTTTT-G----TAACTGAAATA-TAATTAA-----------CGTGTTTATTTGCGAATA-GGG--TGT---------------------CTTG----AGTGACG----T--CCA--T--CACAA-GT---GA--CTCT--TCCCAATCGCATATAACAATGGAATTTT-----TT---TTcctatttattacattttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCAACTGCAGTTTTTCTGTCACTGTAAACTATAGTTGAATAAACTATTTATTACATTTCATATATTTAAACAAACATTCATTTTTTTATCAAAGTGCCTATTTCCAACTTGCAAATCATATACTTTAAGTTAACCAC