lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222                                                                               
lowQualScore                  :                                                                                                                                                                                                                                                                      1111   1111        111     222                                                1                     1111111111                                                   1111111111      1                                                                 11        88888888888888888888888                      22222222                                                                     11        1   22          1            1    2222222           1        1                 11          222                     1   77777777     1             11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111    1       4          1       222     222   555555   1     22                 
lowQualScore                  :                                                                                                                                                                                                                                        4       0   0      22 6       0000   4444  0     555 5   111          3                       6             0    555     88 3     5555555555       3   3      2     3  7777   55 3  55         5555555555  1   4  555    3   55555 0   44     7777    666                99999   22        11111111111111111111111    55 55   777       44444444  0 4            4  777 999999      55     0                         00 55     1   22  77      5 3  9  2    0    8888888           2        0  2   22     2   22   4      000                     5   22222222     5  4  4   4   22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222    5       0    6     7       333     777   000000   5     33       6 6  6  6 
lowQualScore                  :                                                                                                                                                                                                                                        .       .   .      .. .       ....   ....  .     ... .   ...          .                       .             .    ...     .. .     ..........       .   .      .     .  ....   .. .  ..         ..........  .   .  ...    .   ..... .   ..     ....    ...                .....   ..        .......................    .. ..   ...       ........  . .            .  ... ......      ..     .                         .. ..     .   ..  ..      . .  .  .    .    .......           .        .  .   ..     .   ..   .      ...                     .   ........     .  .  .   .   .....................................................................................................    .       .    .     .       ...     ...   ......   .     ..       . .  .  . 
lowQualScore                  :                                                                                                                                                                                                                                        0       8   8      88 0       6666   7777  1     000 7   333          3                       8             3    888     22 9     9999999999       6   6      0     6  7777   00 6  00         7777777777  4   3  888    3   44444 5   66     7777    444                11111   55        55555555555555555555555    55 55   000       55555555  7 1            0  000 999999      00     9                         33 11     4   33  99      0 2  8  5    5    7777777           0        0  5   99     2   88   0      888                     0   00000000     0  0  0   0   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000    0       0    0     0       000     000   000000   0     00       0 0  0  0 
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAANTGTTTGAATTGCGAAGTAGNTGAATTTTGATC-TCT-NT-TAATAAGGTANA-ACAGNCCTGATCTTAA-TGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCC-AGCAGTTT----------TATTTGC-TAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCT------C---CACAAGTGT---CAAT-TTG--G--ATAAA--AATAT----GATA---ATATCTGATTTAGGTA-----ATA-NTTTTGAATTAT-AAAAGTA-AA---------CAAA--C--ATT---TATATATA------CATGTCTTGATATTTATT-TT---A-C----AAGCAT--TCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANGA--AAAAAAAATTATCGCAAGANTATT-CAACTCAAGTTAGAATACTTTTGCAT-AANAATCGCTGTAGAATACGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGAGACA-GTGT---AAAATCAANATNGATNACATCCTTGNTAANATTGTAANTGANGCNNTTGTTTAGCATTTATATGGAATTTTGAAAAATGTNTACATTAAGAGATTAAGACAATTTTNTAAAGCTAAGATTGAAAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
Reference ( gi|1 )            : TTTATCCTGGATATTAGGAAGCCTTCAGGGAAATAACAGGTGATTGTCAATGGAAACTGGGATTTTTTAAGATTTTACCAAACTGGGAAATAAAGTGCAGCACTGTTAAGATAATGTTCTAACAATTAATTATCAGATATTACAACAATATTACGTATCCTGAGATTTTTTTATCCCCTAATGTAAGAATAATTTCCCTCAAAATAATTTGTTTTTCATTTGGGGAAAAAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCT-CT-TAATAAGGGAGA-ACAATACTGATCTTAA-TGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCC-GGTAGTTT----------TATTTGC-TAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCT------C---CACAAGAGT---CAAT-TTG--G--ATAAA--AATAT----GATA---ATATCTGATTTAGGTA-----ATA-ATTTTGAAT---------TA-AA---------CAAA--C--ATT---TATATATA------CATGTCTTGATATTTATT-TT---A-C----AAGCAT--TCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAGA--AAAAAACATTATCGCAAAACTATTCTAACTTAAGTTAGAATAGTTTTGCAT-AACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACA--TTTGATGACAT----ACTGATGTTCTTGTT---TATTTATATGGTGTTTT--AAGATGTGTACATGAA------AAGACAATATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGATACTTAGTAGA
gi|17                         :                                                                                                                                                                                                                                     AAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCT-GT-TC----GGGTTA-AAAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAATA---TATGA---TATCT-GGT
gi|8                          :                                                                                                                                                                                                                                        ATGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCT-CT-TAATAAGGTACA-ACAGTCCTGATCTTAA-TGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCC-AGCAGTTT----------TATTTAC-TAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT----------AACAAGTGT---CAAT-TTG--G--ATAAA--AATAT----GATA---ATATCTAATTTAGGTA-----ATA-ATTTTGAATTATTAAAAGTA-AA---------CAAA--C--ATT---TACATAT--------ATGTCT
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAA-TGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCC-AGCAGTTT----------TATTTGC-TAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCT------C---CACAAGTGT---CAATATTA--T--A-AAA--AATAT----GATA---ATATCTGATTTAGGTA-----ATA-TTTTTGAAT---------TATAAAAGT-----AAAA--C--ATT---TATATATA------CATGTGTTGATATTTATT-TA---A-T----AAGCAT--TCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAGA--AAAA
gi|3                          :                                                                                                                                                                                                                                         TGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAA-TGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCC-AGCAGTTT----------TATCTGG-TAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCC------C---CACAAGTGT---CAAT-TTG--G--ATAAA--AATAT----GAT----ATATCTGATTTAGGTA-----ATA-TTTTTGAATTATAAAAAGTA-AA---------CAAA--C--ATT---TATATATA------TAT---CTAATATTTATT-TT---A-C----AAGTAT--TCTAATTCAATTTAGAATATTTTTGC
gi|13                         :                                                                                                                                                                                                                                                             atAATTTTAGCC-TCT-GTATAATAAAATA-A-ACAGCCCTGATGTTAA-TGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCC-AGCAGTTC----------TATTTGC-TATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTTTGCGT---CAAAAAAAT-----AT-TTGATG--ATGAA--Attgtgaa
gi|9                          :                                                                                                                                                                                                                                                                              gT-TAGTAAGGTAGA-ACAGTCCTGGTCTTAA-ATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTC-AGCAGTTT----------TATTTGT-TAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCT------C---CACAAGTGT---CAAT-TTG--G--ACAAAAGAAAAT----GATA---ATATATGATTTAGGTA-----ATATTTTTTAAATTATAAAAAGTA-AA---------CAAA--C--ATT---TATATATA------TATGTTTTGATATCTATT-TT---A-C----AAGCAT--TCTAATTC
gi|5                          :                                                                                                                                                                                                                                                                                  tATAAGGTAAA-ACAGACCTGATCTTAA-TACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCC-AGACGTTT----------TCTTTGC-TAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCT------T---CAAAAGCGT---CAAT-TTG--G--ATAAA--AATAT----GATA---ATATCAGGTTTAGGCATGAATATA-A----AAAG---------TA-AA---------CAAA--C--ATT---TATAAATA------T-TAT-TTAAGATTTATT-TT---A-A----AAGTAT--TCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATGA--AAA
gi|14                         :                                                                                                                                                                                                                                                                                                    CTGATCTTAA-TGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAGATA-TTT----------TCGTTGT-TAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCT------C---CACAAGTGTCAACAAT-TTA--G--AT-GA--AATAA----GATA---ATATCTGGTTAAGGCA-----ATATTTTTTGAAT---------AA-AA---------
gi|7                          :                                                                                                                                                                                                                                                                                                   ccTGATCTTAA-TGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCC-AACAGTTT----------AATTTGC-TAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCT------T---CACAAATGT---CCAT-TTG--G--ATAAA--AATAT----GATA---ATATCAGATTTAGGTA-----ATA-TTTATTAATTATAAAAAGTA-AA---------CAAT--C--ATT---TATATAT--------ATGTATTGATATTTATT-TT---A-C----ATGCAT--TCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAGA--AAAAAAag
gi|6                          :                                                                                                                                                                                                                                                                                                     cgATCGTAA-TGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATC----TAGTTTACCCTTTTTCTATTTGC-TAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTT------CTTTCA----------TAAT-TCG----------------T----GATG---ATATGTGCTTTGAGCA-----ATC-ATTTTGAACATA------CA-AAAGTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATAAGATTTATTGTT---AGT----GAGT--------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAGA--A
gi|12                         :                                                                                                                                                                                                                                                                                                      tcTCTTAA-TGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCC-TGCAGTTT----------TATTTGC-TAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACT------C---AACAAGTGT---CAAT-TTG--G--ATAAA--TTTAT----GATA---ATATCTGATTTAGGTA-----ATA-ATTTTGAATTATAAAAAGTA-AA---------CAAA--C--ATT---TATATAT--------ATGTCT
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAA-TGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCC-AGGAGTTT----------TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCC------C---CAAAAGTGT---CTAT-TTG--G--AAAAA--CATAT----GA-----A-ATCTGGTTTAAGCA-----ATA-TTATTTAGT-------------A---------TAAA--C--AT---------AAA------CAGTTCTGAAGATTGATA-TT---A-A----AAGAAT--TCTAACTCGAGTTA---------TGCATCA------------------------AAAGATTATTG---GATTATG-------AAGTTATAATAATCTTGCAT-AACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                        GT---TGAG-TTG--GTTATAAA--GGTATCACAGGTATTGATATTT--TTTAATTA------TA-A----AAAG---------TA-AA---------CAAA--C--ATT---TATATATA--------TGTCTTGATATTTATT-TT---A-C----AAGCAT--TC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTT-TT-TT---A-CGCAAAAGTAT--TGCAACTCGAGTTAGAATACTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TT-TTGACA-C----AAACATACTCTAAGACAAGTTAGAATACTTTTtattggattatgaccaaaaaaaataacgcaatcattgtagaatacaacacttttctcctgcaaaactatt
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                        ataaggtaaaacagacctgatcttaatacctgtttagcatcaaacaaaactattacactggattataaaatccagacgttttctttgctatttaacaaccccttttaactaaaaatgcttcaaaagcgtcaatttggataaaaatatgataatatcaggtttaggcatgaatataaaaagtaaacaaacatttataaatattatttaagatttatttt----AAGTAT--TCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAAA-TAACGCAAgttattggattatgaaaa
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aACTTTTGCGTCAAAAAAATATTTGATGATGA--AAAAAAAGTTATCACAtcattgtagaatacaacacttttctcctgcaaaactatt
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTA-CGCAAAAGTATTGCAACTCGAGTTAGAATACTTTcgaataaaaatcgttgtaaaataagatttttttctcattcaaaactactc
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTCTAATTCAAGTTAGAATACTTTTACATCAAGAATTaaaaattattggattatgaccaaaaaaaataacgcaatcattgtagaatacaacacttttctcctgcaaaactatt
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cgtgatcttaatgcctgttaattaaacataagtagtacaatggatgataatatccaacagtttaatttgctattttatgcactccttttaactcaaaatgcttcacaaatgtccatttggataaaaatatgataatatcagatttaggtaatatttattaattataaaaagtaaacaatcatttatatatatgtattgatatttattttacatgcTTGCAG-AACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTCattacattaagaaaaaaa
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AT-AAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            acttttgcgtcaaaaaaatatttgatgatgaaaaaaaagttatcacacgaTGTAGAATACAACACTTTTCTCCTGCAAAACTATT
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aaagtattctaactcgagttgcaatacttttgcgtaaaaaaattattggattatgaccaaaaaaaataacgcaatcatCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTAA--AAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATTAAGAGATTAAGAC-ATTTTA-AAAGCTAAGATT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        actgtttttaaagcatagcgatttgtgtttattactgctgataatcgtattgttAATTGATAACA--CTTGTTAATATTGTAAGTAATGCAGTT-TT---CATTT-----GAATTTTGAAAAATATTTACA----------AAAACA----TCTAAAG--AA----GAAAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAtttttttcatttccaatatcattactg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|21 ): TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGATATATAA
Unaligned ( gi|22 ): AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGC






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                             11111                                                                                                                                                                                                                               111                                   22222222                                                                                      7777777777777777777777777777           111                                                               2   333                    222   1      4444                333          44444444444         6666666666     2222        11                                                                                     
lowQualScore                  :                                                                                                                                                                                                                                        1           4       1         33 6   00000         5 5    1                                  1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      55  888    3   3   666    666   666       55555555    4   4         4   4                                      5              1  66     7777777777777777777777777777      6    888        1              99   1        6             333     2   0   555      2  1  11  1   666   4   1  4444 1   1 222  6   444    7     00000000000    1    2222222222     1111  88    00    888           6    0                                                        1    
lowQualScore                  :                                                                                                                                                                                                                                        .           .       .         .. .   .....         . .    .                                  .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      ..  ...    .   .   ...    ...   ...       ........    .   .         .   .                                      .              .  ..     ............................      .    ...        .              ..   .        .             ...     .   .   ...      .  .  ..  .   ...   .   .  .... .   . ...  .   ...    .     ...........    .    ..........     ....  ..    ..    ...           .    .                                                        .    
lowQualScore                  :                                                                                                                                                                                                                                        0           6       0         33 7   66666         9 0    0                                  0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   88 3      88  333    3   6   444    444   444       00000000    3   4         4   4                                      4              0  99     4444444444444444444444444444      7    000        0              00   0        4             000     5   0   000      5  0  77  0   000   0   0  3333 0   0 777  7   000    3     00000000000    0    0000000000     3333  33    77    888           7    7                                                        0    
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TA-TAAAAA-GTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANGA--AAAAAA-A-TATCGCAAGACTATT--GACT---AAGTTATAATANTCTTGCATAACAATCGCTGTAGAATANGATACTTTTCTCNTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACAT-CTTG-TAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGACAAT-TTATAAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAANTGTTTGAATTGCGAAGTAGNTGAATTTTGATC-TCTN-T-TAATAAGGTANA-ACAGNCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-NT-TTTGAAT-TA-T-AAAA-GTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANGA--AAAAAAAATTATCGCAAGANTATTC-AACTC--AAGTTAGAATACTTTTGCATAANAATCGCTGTAGAATACGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGAGACA-GTG---TAAAATCAANATNGATNACATCCTTGNTAANATTGTAANTGANGCNNTTGTTTAGCATTTATATGGAATTTTGAAAAATGTNTACATTAAGAGATTAAGACAATTTTNTAAAGCTAAGATTGAAAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTC-T-TAATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT------------TA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAGA--AAAAAACATTATCGCAAAACTATTCTAACTT--AAGTTAGAATAGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACAT--TTGATGACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACATGAA------AAGACAATATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTG---TAAAATCAATATAAATTACATCTTTA--AAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATTAAGAGATTAAGAC-ATTTTA-AAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT-TA-TAAAAA-GTA-AAC---AAAC---ATT---TATATAT--------ATGTCTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTG-TATAATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                   CCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGAA--TA---AAAA-Ggaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cATTGATAACA--CTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT-----GAATTTTGAAAAATATTTACA----------AAAACA----TCTAAAG--AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAAA-TAACGCAAattata
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aAATCATTGTAGAATACAACACTTTTCTCCTGCAAAACTATTtcattgtagaatacaacacttttctcctgcaaaactatt
gi|17                         :                                                                                                                                                             aaagtattctaactcgagttgcaatacttttgcgtaaaaaaattattggattatgaccaaaaaaaataacgcAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTG-T----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAAT-TA-T-AAAAAGTA-AAC---AAAC---ATT---TATATATA--------TGTCTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATGA--AAAAA----------------------------AAGTTATCACAC----GAATAAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TA-T-AAAA-GTA-------AAAC---ATT---TATATATA------CATGTGTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAGA--AAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCC
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtgatatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TA-TAAAAA-GTA-AAC---AAAC---ATT---TATATATA------TAT---CTA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AG-TA-T-AAAC-ATA-AAC---A-----------------------------GTTCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATGA--Attgtgaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCAAAAGATTATTG-GATTATGAAGTTATAATAATCTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCgttataataatcttgcataacaatcactgtagaatgatacttttctcgtgcagaactattc
gi|5                          :                                                              cttaatgcctatttaggatcaaacataaccagtacaatggataatactgtccaggagttttttttaaatattttctgaacacgttttaactcaaaatgccccaaaagtgtctatttggaaaaacatatgaaatctggtttaagcaatattatttagtataaacataaacagttctgaagattgatattaaaagaattctaactcgagttatgcATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA--TA-TAAAAA-GTA-AAC---AAAC---ATT---TATAAATA------T-TAT-TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATGA--AAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAACATA-C-AAAA-GTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAGA--A
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAAT-TA-TAAAAA-GTA-AAC---AATC---ATT---TATATAT--------ATGTATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAGA--AAAAAA
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTC-T-TAATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAAT-TATT-AAAA-GTA-AAC---AAAC---ATT---TACATAT--------ATGTCT
gi|9                          :                                                                                                                                                                                                                                                                             a-T-TAGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAAT-TA-TAAAAA-GTA-AAC---AAAC---ATT---TATATATA------TATGTTTTG-ATATCTATT-TTA-CAAGCATTCTAATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111111111111111111111111111111                                                                                                                                                                                                                                                                              
lowQualScore                  :                                                                                                                                                                                                                                                                             11111                                                                                                                                                                                                                                                                   22222222                                                                                        3333333333333333333333333333333333333333                                                               1    222                       111     2222                333          44444444444         77777777777      222        11                                                                                     
lowQualScore                  :                                                                                                                                                                                                                                                                      33 6   00000         5 5                                       1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      3    3       3   666    666   666       77777777    4   4         4   4                                      5              1 888       8888888888888888888888888888888888888888     3  2              77   4        1             333     1   5    111     1  1          7   666  1  8888         1  6   000    7     11111111111         00000000000      888   7    00    888           6                            0                           0         
lowQualScore                  :                                                                                                                                                                                                                                                                      .. .   .....         . .                                       .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      .    .       .   ...    ...   ...       ........    .   .         .   .                                      .              . ...       ........................................     .  .              ..   .        .             ...     .   .    ...     .  .          .   ...  .  ....         .  .   ...    .     ...........         ...........      ...   .    ..    ...           .                            .                           .         
lowQualScore                  :                                                                                                                                                                                                                                                                      33 7   66666         4 0                                       0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   33 3      2    3       6   444    444   444       22222222    3   4         4   4                                      4              0 888       5555555555555555555555555555555555555555     0  5              88   0        0             000     0   5    555     0  0          3   777  0  3333         0  7   333    3     33333333333         33333333333      333   3    33    888           7                            7                           7         
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGCA-GATTAT--TG---TAAG-TATAATA-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATCTTNT-AANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACA-T-AA------AAGACA-T-TTATAAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGCAAGACTAT--TGAC-TAAGTTATAATANTCTTGCATAACAATCGCTGTAGAATANGATACTTTTCTCNTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATCTTGT-AANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACA-T-AA------AAGACAAT-TTATAAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTC-T-TAATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT----------TA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAG---AAAAAAACAT-TATCGCAAAACTATTCTAACTTAAGTTAGAATAGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACATTTGAT-GACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACA-TGAA------AAGACAATATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTA-AAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATT-AAGAGATTAAGACATT-TTA-AAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTG-TATAATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                  CCCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGA---ATA-AAAAGgaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTGATAACA-CTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT----GA-ATTTTGAAAAATATTTACA-----------AAAACA----TCTAAAG--AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAA-A--TAACGCA--ATCAT--TG---TAGAATACAACACTTTTattata
gi|17                         :                                                                                                                                                                                                                                    aAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTG-T----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATCctcctgcaaaactatt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATG---AAAAAAA-AGTTATCACACGA-----------------ATAA-----------AA--ATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTAT--AAAAGTA-------AAAC---ATT---TATATATA------CATGTGTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAG---AAAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TAT---CTA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AGTATA-AACA-TA-AAC---A-----------------------------GTTCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATG---AA------------------GTTA--------TAA----TAAT---CTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCttgtgaa
gi|5                          :                                                                                                                                                                                                                                                                                   ATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA-TATA-AAAAGTA-AAC---AAAC---ATT---TATAAATA------T-TAT-TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATG---AAAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAA-CATACAAAAGTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAG---AA
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAATTATA-AAAAGTA-AAC---AATC---ATT---TATATAT--------ATGTATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAG---AAAAAAA-
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTC-T-TAATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAATTATT-AAAAGTA-AAC---AAAC---ATT---TACATAT--------ATGTCT
gi|9                          :                                                                                                                                                                                                                                                                             a-T-TAGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TATGTTTTG-ATATCTATT-TTA-CAAGCATTCTAATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                             11111                                                                                                                                                                                                                                                                   22222222                                                                                        555555555555555555555555555555555555555555                                                               1    222                              2222                333          44444444444         77777777777     1  1   1    11                                                                                     
lowQualScore                  :                                                                                                                                                                                                                                                                      33 6   00000         5 5                                       1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      3    3       3   666    666   666       77777777    4   4         4   4                                      5              1 888       444444444444444444444444444444444444444444                       66   1        4             333     1   5    111     1  1           0 88   1  8888         1  6   000    7     11111111111         00000000000     3  3   6    00    888           6                            0                           0         
lowQualScore                  :                                                                                                                                                                                                                                                                      .. .   .....         . .                                       .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      .    .       .   ...    ...   ...       ........    .   .         .   .                                      .              . ...       ..........................................                       ..   .        .             ...     .   .    ...     .  .           . ..   .  ....         .  .   ...    .     ...........         ...........     .  .   .    ..    ...           .                            .                           .         
lowQualScore                  :                                                                                                                                                                                                                                                                      33 7   66666         4 0                                       0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   33 3      2    3       6   444    444   444       22222222    3   4         4   4                                      4              0 888       000000000000000000000000000000000000000000                       88   0        2             000     0   5    555     0  0           7 00   0  3333         0  7   333    3     33333333333         33333333333     3  3   0    33    888           7                            7                           7         
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC-A-ACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACA-T-AA------AAGAC-AT-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC-AGATTATT-----GTA-AG-TATAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATCTTNTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACA-T-AA------AAGAC-AT-TTATAAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTC-T-TAATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT----------TA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAG---AAAAAAACAT-TATCGCAAAACTATTCTAACTTA-AGTTAGAAT-AGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACATTTGATGACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACA-TGAA------AAGACAATATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTAAAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATT-AAGAGATTAAGAC-AT-TTTAAAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTG-TATAATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                  CCCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGA---ATA-AAAAGgaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGATAACACTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT----GA-ATTTTGAAAAATATTTACA-----------AAAAC-AT-CTA--AAG--AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAA-A--TAACGC-A-ATCATT-----GTAGAA-TACAAC-A-CTTTattata
gi|17                         :                                                                                                                                                                                                                                    aAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTG-T----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATCtctcctgcaaaactatt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATG---AAAAAAA-AGTTATCAC-A-------------------------------CGAATAAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTAT--AAAAGTA-------AAAC---ATT---TATATATA------CATGTGTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAG---AAAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TAT---CTA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AGTATA-AACA-TA-AAC---A-----------------------------GTTCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATG---AA-----------------------------GT-----TATAATAA-TCTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCttgtgaa
gi|5                          :                                                                                                                                                                                                                                                                                   ATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA-TATA-AAAAGTA-AAC---AAAC---ATT---TATAAATA------T-TAT-TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATG---AAAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAA-CATACAAAAGTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAG---AA
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAATTATA-AAAAGTA-AAC---AATC---ATT---TATATAT--------ATGTATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAG---AAAAAAA-
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTC-T-TAATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAATTATT-AAAAGTA-AAC---AAAC---ATT---TACATAT--------ATGTCT
gi|9                          :                                                                                                                                                                                                                                                                             a-T-TAGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TATGTTTTG-ATATCTATT-TTA-CAAGCATTCTAATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                             11111                                                                                                                                                                                                                                                                   22222222                                                                                        333333333333333333333333333333333333333333                                                               1    222                              2222                333          44444444444         7777777777     22222   1                                                                                           
lowQualScore                  :                                                                                                                                                                                                                                                                      33 6   00000         5 5                                       1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      3    3       3   666    666   666       77777777    4   4         4   4                                      5              1 888       666666666666666666666666666666666666666666                       66   1        4             333     1   5    111     1  1                  1  8888         1  6   000    7     11111111111         0000000000     22222   3   888    888           6                            0                           0         
lowQualScore                  :                                                                                                                                                                                                                                                                      .. .   .....         . .                                       .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      .    .       .   ...    ...   ...       ........    .   .         .   .                                      .              . ...       ..........................................                       ..   .        .             ...     .   .    ...     .  .                  .  ....         .  .   ...    .     ...........         ..........     .....   .   ...    ...           .                            .                           .         
lowQualScore                  :                                                                                                                                                                                                                                                                      33 7   66666         4 0                                       0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   33 3      2    3       6   444    444   444       22222222    3   4         4   4                                      4              0 888       000000000000000000000000000000000000000000                       88   0        2             000     0   5    555     0  0                  0  3333         0  7   333    3     33333333333         3333333333     00000   3   777    888           7                            7                           7         
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTC-T-TAATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT----------TA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAG---AAAAAAACAT-TATCGCAAAACTATTCTAACTTA-AGTTAGAAT-AGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACATTTGATGACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACATGAA------AAGACAA-TATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTAAAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATTAAGAGATTAAGAC-ATT-TTA-AAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTG-TATAATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                  CCCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGA---ATA-AAAAGgaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGATAACACTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT----GA-ATTTTGAAAAATATTTACA----------AAAAC-A-T-CTA-AAG---AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAA-A--TAACGC--AATCATT-----GTAGAA-TACAAC-A-CTTTattata
gi|17                         :                                                                                                                                                                                                                                    aAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTG-T----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATCtctcctgcaaaactatt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATG---AAAAAAA-AGTTATCAC--A------------------------------CGAATAAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTAT--AAAAGTA-------AAAC---ATT---TATATATA------CATGTGTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAG---AAAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TAT---CTA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AGTATA-AACA-TA-AAC---A-----------------------------GTTCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATG---AA-----------------------------GT-----TATAATAA-TCTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCttgtgaa
gi|5                          :                                                                                                                                                                                                                                                                                   ATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA-TATA-AAAAGTA-AAC---AAAC---ATT---TATAAATA------T-TAT-TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATG---AAAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAA-CATACAAAAGTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAG---AA
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAATTATA-AAAAGTA-AAC---AATC---ATT---TATATAT--------ATGTATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAG---AAAAAAA-
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTC-T-TAATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAATTATT-AAAAGTA-AAC---AAAC---ATT---TACATAT--------ATGTCT
gi|9                          :                                                                                                                                                                                                                                                                             a-T-TAGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TATGTTTTG-ATATCTATT-TTA-CAAGCATTCTAATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                             11111                                                                                                                                                                                                                                                                   22222222                                                                                        333333333333333333333333333333333333333333                                                               1    222                              2222                333          44444444444         7777777777     22222   1                                                                                           
lowQualScore                  :                                                                                                                                                                                                                                                                      33 6   00000         5 5                                       1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      3    3       3   666    666   666       77777777    4   4         4   4                                      5              1 888       666666666666666666666666666666666666666666                       66   1        4             333     1   5    111     1  1                  1  8888         1  6   000    7     11111111111         0000000000     22222   3   888    888           6                            0                           0         
lowQualScore                  :                                                                                                                                                                                                                                                                      .. .   .....         . .                                       .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      .    .       .   ...    ...   ...       ........    .   .         .   .                                      .              . ...       ..........................................                       ..   .        .             ...     .   .    ...     .  .                  .  ....         .  .   ...    .     ...........         ..........     .....   .   ...    ...           .                            .                           .         
lowQualScore                  :                                                                                                                                                                                                                                                                      33 7   66666         4 0                                       0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   33 3      2    3       6   444    444   444       22222222    3   4         4   4                                      4              0 888       000000000000000000000000000000000000000000                       88   0        2             000     0   5    555     0  0                  0  3333         0  7   333    3     33333333333         3333333333     00000   3   777    888           7                            7                           7         
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTC-T-TAATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT----------TA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAG---AAAAAAACAT-TATCGCAAAACTATTCTAACTTA-AGTTAGAAT-AGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACATTTGATGACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACATGAA------AAGACAA-TATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTAAAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATTAAGAGATTAAGAC-ATT-TTA-AAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTG-TATAATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                  CCCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGA---ATA-AAAAGgaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGATAACACTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT----GA-ATTTTGAAAAATATTTACA----------AAAAC-A-T-CTA-AAG---AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAA-A--TAACGC--AATCATT-----GTAGAA-TACAAC-A-CTTTattata
gi|17                         :                                                                                                                                                                                                                                    aAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTG-T----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATCtctcctgcaaaactatt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATAT--------ATGTCTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATG---AAAAAAA-AGTTATCAC--A------------------------------CGAATAAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTACT-TAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTAT--AAAAGTA-------AAAC---ATT---TATATATA------CATGTGTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAG---AAAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TAT---CTA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AGTATA-AACA-TA-AAC---A-----------------------------GTTCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATG---AA-----------------------------GT-----TATAATAA-TCTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCttgtgaa
gi|5                          :                                                                                                                                                                                                                                                                                   ATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA-TATA-AAAAGTA-AAC---AAAC---ATT---TATAAATA------T-TAT-TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATG---AAAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAA-CATACAAAAGTGTAACCCAAAATCAAATTAAATAAATATAAAAAGGCATA-CATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAG---AA
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAATTATA-AAAAGTA-AAC---AATC---ATT---TATATAT--------ATGTATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAG---AAAAAAA-
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTC-T-TAATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAATTATT-AAAAGTA-AAC---AAAC---ATT---TACATAT--------ATGTCT
gi|9                          :                                                                                                                                                                                                                                                                             a-T-TAGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------TATGTTTTG-ATATCTATT-TTA-CAAGCATTCTAATTC


blockSeqs                     :                                                                                                                                                                                                                                                                      GC A   GTAT          A G                                       A             A    TAT       TTTA      TTC     A     C      T     A  AATC   CT C  TC                   CAA AT   A      A   AG    TT                     TTG   TT A      T    C       T   CCA    CAA   AAA       AAAAAGGC    C   A         G   G                                      A              T ACC       ATAACGCAATCATTGTAGAATACAACACT                                    AA   T        A             GTT     G   .    .       C  T                  A  TGTA         T  G   AGT    A     ATTTTGAAAA          TTAAGAGATT     ATT     .   GCT    .             C
blockSeqs                     :                                                                                                                                                                                                                                                                      AT .   ACTT          G .                                       G             A    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     TT .      T    .       .   .      .     .         AC          C   .         .   .                                      A              T .         GTTATAATAATC                                                     AT   T        A                                                            T  .            G  .   C      .     .                   .              AT      .   .                    C
blockSeqs                     :                                                                                                                                                                                                                                                                      AT .   CTT           A .                                       C             A    .         .         .       .     .      A     .  .      .  .  .                    .   .    .      .   .     .                      .     A  .      T    .       .   .      .     .         AT          G   .         .   .                                      G              A .         AGTTATCACA                                                       .    A        G                                                                                                                                                                     
blockSeqs                     :                                                                                                                                                                                                                                                                      T  .   GT            A .                                       C             A    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     T  .      T    .       .   .      .     .         AT          T   .         .   .                                      A              T .                                                                                                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                      A  .   .             C .                                       G             A    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     T  .      G    .       .   .      .     .         AT          C   .         .   .                                      C              T .                                                                                                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                                           G .                                       C             A    .         .         .       .     .      A     .  .      .  .  .                    .   .    .      .   .     .                      .     T  .      T    .       .   .      .     .         .           A   .         .   .                                      G              A .                                                                                                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                                           . .                                       C             T    .         .         .       .     .      T     .  .      .  .  .                    .   .    .      .   .     .                      .     T  .      T    .       .   .      .     .         .           C   .         .   .                                      .              A .                                                                                                                                                                                                                                                              
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                     C             T    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     A  .      T    .       .   .      .     .         .           T   .         .   .                                                                                                                                                                                                                                                                                                                      
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                     C             G    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     T  .      .    .       .   .      .     .         .           .                                                                                                                                                                                                                                                                                                                                        
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                     G             A    .         .         .       .     .      C     .  .      .  .  .                    .   .    .      .   .     .                      .     A  .      .    .       .   .      .     .         .           .                                                                                                                                                                                                                                                                                                                                        
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                     A             A    .         .         .       .     .      .     .  .      .  .  .                    .   .    .      .   .     .                      .     .  .      .    .                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                     A             .    .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


blockSeqCons                  :                                                                                                                                                                                                                                                                             GCT**                                                                                                                                                                                                                                                                   A*******
originalCons                  : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTN-T-TAATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA------CATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
finalCons                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTGCT--AATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAATTATA-AAAAGTA-AAC---AAAC---ATT---TATATATA-------ATGTCTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN






Alignments
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                             
lowQualScore                  :                                                                                                                                                                                                                                                                             22222                                                                                                                                                                                                                                                              22    111111111111                                                                                   333333333333333333333333333333333333333333                                                               1    222                              2222                333          44444444444         7777777777     22222   1                                                                                           
lowQualScore                  :                                                                                                                                                                                                                                                                      33 6   22222         5 5                                       1             1    555       7777      555     3     3      1     3  7777   44 3  44                   555 44   3      3   44    44                     555   88 3      33        3            7777        66    999999999999   4         4   4                                      5              1 888       666666666666666666666666666666666666666666                       66   1        4             333     1   5    111     1  1                  1  8888         1  6   000    7     11111111111         0000000000     22222   3   888    888           6                            0                           0         
lowQualScore                  :                                                                                                                                                                                                                                                                      .. .   .....         . .                                       .             .    ...       ....      ...     .     .      .     .  ....   .. .  ..                   ... ..   .      .   ..    ..                     ...   .. .      ..        .            ....        ..    ............   .         .   .                                      .              . ...       ..........................................                       ..   .        .             ...     .   .    ...     .  .                  .  ....         .  .   ...    .     ...........         ..........     .....   .   ...    ...           .                            .                           .         
lowQualScore                  :                                                                                                                                                                                                                                                                      33 7   99999         4 0                                       0             9    444       1111      888     3     3      0     3  1111   66 3  66                   888 66   3      3   66    66                     888   33 3      77        3            7777        44    333333333333   4         4   4                                      4              0 888       000000000000000000000000000000000000000000                       88   0        2             000     0   5    555     0  0                  0  3333         0  7   333    3     33333333333         3333333333     00000   3   777    888           7                            7                           7         
consensus                     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTNT-T-AATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TATAAAAA-GTAAACAAACAT----TTATATATA-ATGT-----------CTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
Reference ( family-3741 )     : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGAATTGTGAAGTAGCTGAATTTTGATC-TCTGC-T-AATAAGGTAGA-ACAGCCCTGATCTTAATGCCTGTTTAGAATCAAACATAANTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TATAAAAA-GTAAACAAACAT----TTATATATA-ATGT-----------CTTG-ATATTTATT-TTA-CAAGCATTCTAACTCGAGTTAGAATACTTTTGCGTCAAGAAATTATTGGATTANG---AAAAAAA-A--TATCGC--AACCATT-----GTA-AG-TANAAT-A-TTTTGCATAACAATCGCTGTAGAATAAGATNCTTTTCTCGTGCAAAACTATTCNNNCTTGANACATGTGTTATAAAATNAANATTAATTACATTTGTTAANAT----ACTGATGTTNTTGTTT--CATTTATATGG-GTTTT--AAGATGTGTACAT-AA------AAGAC-A-T-TTA-AAAGCCAAGATTGAAAATAAAAAACAGTTTTTTCCTCCTCCTGAACAATTTGCGAAAACCTAGTTACAATAGTTTTGCGCCGAGCCCTCGA
gi|1                          :                                                                                                                                                                                                                                     AAAATGTTTGAATTGTGAAGTAGCTAAATTTTGATC-TCTCT-T-AATAAGGGAGA-ACAATACTGATCTTAATGCCTGTTTAGAATCAAACATAAATAGTACAATGGATTATAA---TATCCGG----TAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGAGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT-----------TAAACAAACAT----TTATATATACATGT-----------CTTG-ATATTTATT-TTA-CAAGCATTCTAATTCAAGTTAGAATACTTTTGCATCAAGAAATTATTGCATTTAG---AAAAAAACAT-TATCGCAAAACTATTCTAACTTA-AGTTAGAAT-AGTTTTGCATAACAATTGCTGTAAAATAAGATACTTTTCACTTGCAAAACTATTCTAACTTGATACATGTGTTATAAAATAAAAATTAATTACATTTGATGACAT----ACTGATGTTCTTGTTT---ATTTATATGGTGTTTT--AAGATGTGTACATGAA------AAGACAA-TATTATAAAGCCAATATTGAAACTAAAAAA-AGTTTTTTCCACCTCCTGTAAAATTTCTGAAATGTCATTTAGAATAGACTTGCGCCGAACCCTCGA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tttatcctggatattaggaagccttcagggaaataacaggtgattgtcaatggaaactgggattttttaagattttaccaaactgggaaataaagtgcagcactgttaagataatgttctaacaattaattatcagatattacaacaatattacgtatcctgagatttttttatcccctaatgtaagaataatttccctcaaaataatttgtttttcatttggggaaaTATT-GTTCTTGAGACA-GTGT---AAAATCAATATAAATTACATCTTTAAAAAT----ACTGAAGTTTTTGTTTAGTATTTATATGG------------TGTGTATATTAAGAGATTAAGAC-ATT-TTA-AAAGCTAAGATTtacttagtaga
gi|12                         :                                                                                                                                                                                                                                                         actgtttttaaagcatagcgatttgtgtttattactgctgataatcgTCTTAATGCCTGTTTAGAATCAAACAAAAATAGTACAATGGATAATAA---TATCCTG----CAGTTT---TATTT-GCTAT-TTTATGTACCCC-TT----TTA--A-CT--CAAAATACTCAACAAGTGT---C--AAT-TTGGAT-AAA--TTTA--TGATAATATCTGATTTAGGTA---ATA-AT-TTTGAAT-TATAAAAA-GTAAACAAACAT----TTATATAT--ATGT-----------CTtttttttcatttccaatatcattactg
gi|13                         :                                                                                                                                                                                                                                                              GAATTTTAGCC-TCTGTAT-AATAAAATA-A-ACAGCCCTGATGTTAATGCATGTTTAGAATCAAACAGAAGAAGTACAATGTATAATAATATTATCCAG----CAGTTC---TATTT-GCTATCTTTGTGCATGTC-TTAATCTTACTA-CTTCTAAAATACTTT---TGCGT---C--AA---------AAA--AATATTTGATGAT
gi|14                         :                                                                                                                                                                                                                                                                                                  CCCTGATCTTAATGCCTGTTTAGAATCAATTATAACTAGTACAATTGATAATAA---TATCCAG----ATATTT---TCGTT-GTTAT-TTTATGAGCCTC-TT----TTA--A-CT--CATAATGCTCCACAAGTGTCAAC--AAT-TTAGAT--GA--AATA--AGATAATATCTGGTTAAGGCA---ATATTT-TTTGA----ATAAAAA-Ggaaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGATAACACTTGTTAATATTGTAAGTAATGCAGTT--TT--CATTT----GA-ATTTTGAAAAATATTTACA----------AAAAC-A-T-CTA-AAG---AAGA----AAATAAAAAACAGTTCTTTCCTCCTCCTGAACAATTTGCAAAAACCTAGTTACAATAGTTTTGCGCCAAGCCTTCAA
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGTATTCTAACTCGAGTTGCAATACTTTTGCGTAAAAAAATTATTGGATTATGACCAAAAAAA-A--TAACGC--AATCATT-----GTAGAA-TACAAC-A-CTTTattata
gi|17                         :                                                                                                                                                                                                                                    aAAATTGTATGAATTGCGAAGTACCCGTATTTTG-TCATCTGT-----TCGGGTTAA-AAAGCCTTGTCCTAAATCATTATTTAGAATCAAACAT-ACTCGTACAAT--AT-ATGA---TATCtctcctgcaaaactatt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTATTGATA-TT-TTTTAAT-TATAAAAA-GTAAACAAACAT----TTATATAT--ATGT-----------CTTG-ATATTTATT-TTA-CAAGCATTCtggt
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gttgagttggttataaaggtatcacACTTTTGCGTCAAAAAAATATTTGATGATG---AAAAAAA-AGTTATCAC--A------------------------------CGAATAAAAATCGTTGTAAAATAAGATTTTTTTCTCATTCAAAACTACTC
gi|2                          :                                                                                                                                                                                                                                         TGTTTGAGTTGTGAAGCAGATGAATTTTGATC-TCTAC-TTAATAAGGTAGA-ACAGTCCAGATCTTAATGCCTGTTTAGAATCAAACATAAGTAGTACAATGGATAATAA---TATCCAG----CAGTTT---TATTT-GCTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AATATT--ATAAAA--AATA--TGATAATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TAT-AAAA-GTA---AAACAT----TTATATATACATGT-----------GTTG-ATATTTATT-TAA-TAAGCATTCTAATTCAAGTTAGAATTCCTTTGCATCAAGAAATTATTGGATTAAG---AAAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCAGAACAATCACTGTAGAATATGGTTCTTTTCTCATGCAAAACTATTC
gi|21                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGCAAAAACCTAGTTACAATAGTTTTGCACCAAGCCCTTGA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAATAAAAAACAGTTTTTTCCTCCTCCTCAACAATTTGCtatataa
gi|3                          :                                                                                                                                                                                                                                       ATTGTTTAAATCGGGAAGTAGATGAATTTTGA------------ATAAGGTAAAGACAGCCCTGATGTTAATGCCTGTTTAATATCAAACATATCTAGTACAATGGATAATGA---CATCCAG----CAGTTT---TATCT-GGTAT-TTTACACACCCC-TT----TTA--A-CT--CAAAATGCCCCACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGAT-ATATCTGATTTAGGTA---ATA-TT-TTTGAAT-TATAAAAA-GTAAACAAACAT----TTATATAT--ATAT-----------C-TA-ATATTTATT-TTA-CAAGTATTCTAATTCAATTTAGAATATTTTTGC
gi|4                          :                                                                                                                                                                                                                                                                                                         CTTAATGCCTATTTAGGATCAAACATAACCAGTACAATGGATAATAC---TGTCCAG----GAGTTT---TTTTTAAATAT-TTTCTGAACACG-TT----TTA--A-CT--CAAAATGCCCCAAAAGTGT---C--TAT-TTGGAA-AAA--CATA--TGA-A--ATCTGGTTTAAGCA---ATA-TTATTT--AG-TATAAACA--TAAACA---------------------GT-----------TCTGAAGATTGATA-TTA-AAAGAATTCTAACTCGAGTTA---------TGCATCAAAAGATTATTGGATTATG---AA-----------------------------GT-----TATAATAA-TCTTGCATAACAATCACTGTAGAAT--GATACTTTTCTCGTGCAGAACTATTCttgtgaa
gi|5                          :                                                                                                                                                                                                                                                                                   ATAAGGTAAA-ACAGACCTGATCTTAATACCTGTTTAGCATCAAACAAAACTATTACACTGGATTATAA---AATCCAG----ACGTTT---TCTTT-GCTAT-TTAACA-ACCCC-TT----TTA--A-CT--AAAAATGCTTCAAAAGCGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCAGGTTTAGGCA------------TGAA--TATAAAAA-GTAAACAAACAT----TTATAAATA-TTAT------------TTA-AGATTTATT-TTA-AAAGTATTCTAACTTGTCTTAGAGTATGTTTGTGTCAA-AAGTTATTGGATTATG---AAAA
gi|6                          :                                                                                                                                                                                                                                                                                                       ATCGTAATGTTTATTTAAAACCAAACATAACTAGTACGATGGATTATAA---TATCTAGTTTACCCTTTTTCTATTT-GCTAT-TTTAT-TACCTCATC----CTA--ACCT--AAAAATTTTC------TTT---CATAAT-TCG---------------TGATGATATGTGCTTTGAGCA---ATC-AT-TTTGAACATACAAAAGTGTAACCCAAAATCAAATTAAATA-A-ATATAAAAAGGCATACATA-AGATTTATTGTTAGTGAGT------ACTCGAGTCAGAATGCTTTTG-ATTAACAA--TATTGGATTAAG---AA
gi|7                          :                                                                                                                                                                                                                                                                                                   tcTGATCTTAATGCCTGTT---AATTAAACATAAGTAGTACAATGGATGATAA---TATCCAA----CAGTTT---AATTT-GCTAT-TTTATGCACTCC-TT----TTA--A-CT--CAAAATGCTTCACAAATGT---C--CAT-TTGGAT-AAA--AATA--TGATAATATCAGATTTAGGTA---ATA-TT-TATTAAT-TATAAAAA-GTAAACAATCAT----TTATATAT--ATGT-----------ATTG-ATATTTATT-TTA-CATGCATTCTAATTCAAGTTAGAATACTTTTACATCAAG-AATTATTACATTAAG---AAAAAAA-
gi|8                          :                                                                                                                                                                                                                                       cgTGTTTAACTTGTGAAGTTACTGAATTTTTATC-TCTCT-T-AATAAGGTACA-ACAGTCCTGATCTTAATGCCTGTTTAGAATCAAACATAGATAGTACAATGGATAATTA---TATCCAG----CAGTTT---TATTT-ACTAT-TTTGTGCACCCC-TT----TTA--A-TT--CAGTTTGCT-AACAAGTGT---C--AAT-TTGGAT-AAA--AATA--TGATAATATCTAATTTAGGTA---ATA-AT-TTTGAAT-TATTAAAA-GTAAACAAACAT----TTACATAT--ATGT-----------CT
gi|9                          :                                                                                                                                                                                                                                                                              a-T-AGTAAGGTAGA-ACAGTCCTGGTCTTAAATTCTGTTTAGAATCAAACATGAATAGTACAATGGATACTAA---TATTCAG----CAGTTT---TATTT-GTTAT-TTTATGCACCCC-TT----TTA--A-CT--CAAAATGCTCCACAAGTGT---C--AAT-TTGGAC-AAAAGAAAA--TGATAATATATGATTTAGGTA---ATATTT-TTTAAAT-TATAAAAA-GTAAACAAACAT----TTATATATATATGT-----------TTTG-ATATCTATT-TTA-CAAGCATTCTAATTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN