lowQualScore : 111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 11 11 11111 11111 22222222222222 33333333333333333333 11111 2222222222 2222222 33333333333333333 44444444444444444444444444 1 1111 2222222 22 555555555555555555555555 11111111111111111111111111111111111111111111111111111111111111111111111 44 1
lowQualScore : 00 0 3 11 4 66 00 777 4 666 00000 777 00000 55 4 55 55 55 2 888 00000000000000 888 33333333333333333333 11111 5 5 1 4 1 5555555555 3 1 22 888 0 5 2 9999999 99 5 55555555555555555 8 0 0 99999999999999999999999999 0 5 8 7777 8 88 6 0 6666666 6 11 777777777777777777777777 6 4 6 22222222222222222222222222222222222222222222222222222222222222222222222 6 66 6 7
lowQualScore : .. . . .. . .. .. ... . ... ..... ... ..... .. . .. .. .. . ... .............. ... .................... ..... . . . . . .......... . . .. ... . . . ....... .. . ................. . . . .......................... . . . .... . .. . . ....... . .. ........................ . . . ....................................................................... . .. . .
lowQualScore : 99 1 9 44 0 11 66 000 0 777 00000 333 00000 55 0 55 00 55 2 888 66666666666666 888 33333333333333333333 66666 7 7 7 3 9 0000000000 2 4 33 777 4 0 5 4444444 44 0 00000000000000000 0 8 8 22222222222222222222222222 6 6 0 0000 0 22 0 2 7777777 0 00 555555555555555555555555 0 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 0 00 0 0
consensus : ACCTGTCAAGTCTCACGGTTTCGCCG-TGAGTCTC-ACG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAA-TTAAAACA-----A--AA-TT--CACGA--AAATAAAT---A------C-------TAT---GGTTTTATGAATAAATCGGTAAAAACAT---------TGGT-TCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGT----------ATATAATATACTAACACATAATA-A-TCGT-TACCCGGTGT--CAATGTAA-ACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AANT--TTCGGGGGGGGGGGGGGGGGGGCAGGGGGGCTGCCCCCCGAAACCCCCTNGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-CGCGAA---TATTA----NA---ATGCGCATACNTAACATTNAACATCCACTACCTNCAGANNGATCTTTCCACTATTCAGTACTATT
Reference ( gi|2 ) : ACCTAACAAGTCTCACGGTTTCGCCA-TGAGTCTC-ACG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAA-TTAAAACA-----A--AA-TT--CATGA--AAATAAAT---A------C-------TAT---GGTTTTATGAATAAATCGGTAAAAACAT---------TGGT-TTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGT----------ATATAATATACTAACACATAATA-A-TCAT-TACCCG--GT--CAATGTTA-ACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAA-AATT--TTCAGACGGG------------CA-------TG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATT
gi|1 : ACCTGTCAAGTTTCACGGTTTCGCCG-TGAGTCCC-ACG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCAC-TTAAAACA-----A--AG-TT--CACGA--AAATAAAT---A------C-------TAT---GGTTTTATGAATAAAACGGTAAAAAAAT---------TGGT-TAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGT----------ATATAATATACTAACACATAATA-A-TCGT-TACCCGGTGT--CAATGTAA-ACA-----------------
gi|3 : atACCTGTCAA-TCTCACGGTTTCGCCG-TGAGTCTC-ACG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAA-TTAAAACA-----A--AA-TT--CACGA--AAATAAAT---A------C-------TAT---GGTTTTATGAATAAATCGGTAAAAACAT---------TGGT-TCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-A-TCGT-TACCCG--GT--tcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|6 : tACCTGTCAAGTCTCACGGTTCCGCCG-TGAGTCTC-ACG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAA-TTAAAACA-----A--AA-TT--CACGA--AAATAATT---A------C-------TAT---GGTTTTATGAATAAATCGG--------T---------TG-----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGT----------ATATAAT--------ACATAATA-A-TCGT-TACCCGGTGT--CAATGTAA-ACA-----------------gtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|8 : atACCTGTCAAGTCTCACGGTTTCGCCG-TGAGTCTC-ACG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTG-TTAAAACA-----A--AA-TT--CACGA--AAATAAAT---A------C-------TAT---GGTTTTATGAATAAATCGGTAAAATCAT---------TGGT-TCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGTtcatggcgtcgtctgcta
gi|7 : atACCTGTCAAGCCTCACCGTTTC-CCAGTGAGTCTC-ACCCATTTTG--CAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAA-ATAAAACA-----A--AA-TG--CAT-ACTGAATAGGT---ACTGGATC-------TAT---GACTTCATGAATAAATC-----ATACATTTTTATTGCTGGT-TTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGT----------ATA
gi|5 : atACCTGTCAATTCTCACCATTTCTCCA-CGAGCAAC-ATGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTA----AAAATA-----AATAA-TG--TATAA--AAATGGATAAAA------CAAAAAAATATAGAGATTTTATGAA-AAATCGTTA-----AT---------TACTCTTGAAT-TT-AGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----CA--------------------TA-AGA-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|13 : tACTTACCAAGTCCCACGGTAACGC---------TC-ATT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTTTTATCA-----T--CA-TT--AATGA--AA
gi|11 : tACCTGTTAAATCTCACGGATTTTCTG-TGAGCCTC-ACACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAA-TTGAAACA-----A--AAGTT--TA-GA--AAATGAta
gi|4 : tAGGTGTCACAGTTCTTCT-----GTCTC-AC--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA---AAAACAAGCACA--AA-TTTACAT-A--AAATAA-----A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG----ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGT----------ACA-AATA-A--AACACGAAATATATTTATATAC-----------ATG-TA-ATA-----------------AAT-T--ATGA------TTA-CAAA--AATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGG-AACT--g
gi|12 : acacctgtta-TGAGTCTCGACC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCAT-TTAAAACA-----A--AA-TG--CACGA--AAATAAAT---A------C-------TAT---TGCTTTATGAATAAAT
gi|1 : tgGTGTTAGT----------ATATTATATACTAACACt
gi|9 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccgATACTAACACATATTA-A-TCGT-TACCCG--GTGTCAATTTAA-ACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATTT--TTCGGGGGGG------------TAGGGGGGCTGCCCCCCGAAACCCCCTAGAAataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|16 : aaACACATAATA-A-TCGT-TACCCGGTGT--CAATGTAA-ACA-----------------
gi|1 : -TTAT-TACAC-------CAAAATCATACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAA-AAAAAATTCGGGGGGGGGGGGGGGGGGGCA-------TG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGGG------AA-----ATTA----AG---ATGCAtc
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatA-ACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGA
gi|15 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcaGAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGC
gi|3 : TATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTcgtaa
gi|14 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCA-AAAG-TTT
Alignments
lowQualScore : 111111111111111111
lowQualScore : 11 11111 22222222222222 222222222222222 1 2222222222 33333333333333333 22222 111111 1111 11 444444444444444444 1 2 33333333333333333333333333333 2 1 1111111111 1 1
lowQualScore : 4 0 3 3 00 44 666 3 555 99999 3 00000 55 4 4 55 1 55555555555555 777 2 0 000000000000000 4444 0 5 0 2 1 5555555555 3 1 22 5 2 0 11111111111111111 6 6 22222 44 3 999999 7 3 6 4444 6 55 1 33 555555555555555555 3 6 3 3 1 99999999999999999999999999999 0 44 3 5 1 3333333333 1 22 5 5 4
lowQualScore : . . . . .. .. ... . ... ..... . ..... .. . . .. . .............. ... . . ............... .... . . . . . .......... . . .. . . . ................. . . ..... .. . ...... . . . .... . .. . .. .................. . . . . . ............................. . .. . . . .......... . .. . . .
lowQualScore : 0 7 6 6 11 22 444 6 222 11111 6 00000 55 0 0 55 0 00000000000000 888 5 1 444444444444444 9999 0 0 4 5 9 0000000000 2 4 33 0 5 4 11111111111111111 7 7 22222 55 7 222222 3 2 7 2222 7 88 0 88 777777777777777777 7 7 3 3 0 00000000000000000000000000000 7 77 7 3 0 7777777777 0 00 5 5 0
consensus : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAAAATT--TT-CGGGG--------GGG-GGGNAGGGGGGC-TG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Reference ( family-3713 ) : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAAAANT--TT-CGGGGGGGGGGGGGGGGGGGCAGGGGGGC-TGCCCCCCGAAACCCCCTNGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-CGCGAA---TATTA----NA---ATGCGCATACNTAACATTNAACATCCACTACCTNCAGANNGATCTTTCCACTATTCAGTACTATT
gi|1 : ACCTGTCAAG-TTTCACGGTTTCGCCGTGAGTCCC-A-CG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCACTTAAAACA-----AA--G-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAAACGGTAAAAAAAT---------TGGTTAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|1 : atACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAAAAAAAATT-CGGGG--------GGGGGGGGGGGGGGGCATG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGG-------GAA----ATTA----AG---ATGCtcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatAAACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGa
gi|11 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcACCTGTTAAA-TCTCACGGATTTTCTGTGAGCCTC-A-CACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAATTGAAACA-----AA--AGTTTA-G-A--AAATGAa
gi|12 : tGTGAGTCTCGA-CC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCATTTAAAACA-----AA--A-TGCACG-A--AAATAAATA------C-------TATTG---CTTTATGAATAAATg
gi|13 : tACTTACCAAG-TCCCACGGTAACGC--------TC-A-TT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTt
gi|14 : tCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCAAAtttatcatcattaatgaaata
gi|15 : GAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGCagttt
gi|16 : ACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------cgtaa
gi|2 : ACCTAACAAG-TCTCACGGTTTCGCCATGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCATG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCATTACCCG--GTCAATGTTAACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAAAATT--TT-C------------AGACGGGCA--------TG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATTtc
gi|3 : ACCTGTCAA--TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAA
gi|3 : tTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|4 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCTGTTAAGGTGTCACAGTTCTTCTGT----CTC-A-C--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA--AAAACAAGCACAA--A-TTTACATA--AAATAA--A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG---ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGTAC----------A-AATA-A--AACACGAAATATAT--TTA-----TATACATGT-AATA-----------------AAT-T--ATG----AT-----TACAAAAATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGGAACT--
gi|5 : acACCTGTCAAT-TCTCACCATTTCTCCACGAGCAAC-A-TGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTAA---AAATA-----AATAA-TGTATA-A--AAATGGATAAAA---CAAAAAAATATAGAGATTTTATGAA-AAATCGTTAA-----T---------TA-CTCTTGAATTTAGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----------------CA---TAAG-A-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|6 : tACCTGTCAAG-TCTCACGGTTCCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAATTA------C-------TATGG---TTTTATGAATAAATCGG--------T---------TG----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGTAT----------ATAAT--------ACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|7 : atACCTGTCAAG-CCTCACCGTTTCCCAGTGAGTCTC-ACCC-ATTTT--GCAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAAATAAAACA-----AA--A-TGCAT--ACTGAATAGGTACTGGATC-------TATGA---CTTCATGAATAAATC-----ATACATTTTTATTGCTGGTTTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGTAT----------Atcatggcgtcgtctgcta
gi|8 : atACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTGTTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAATCAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGT
gi|9 : atATACTAACACATATTA-ATCGTTACCCGGTGTCAATTTAAACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATT--TTTCGGGGG------------GGTAGGGGGGC-TGCCCCCCGAAACCCCCTAGAA
Alignments
lowQualScore : 11 11111 22222222222222 222222222222222 1 2222222222 33333333333333333 22222 111111 1111 1 1111 333 2 1 1 1 222 333333333 1 2 1111111111 1 1
lowQualScore : 4 0 3 3 00 44 666 3 555 99999 3 00000 55 4 4 55 1 55555555555555 777 2 0 000000000000000 4444 0 5 0 2 1 5555555555 3 1 22 5 2 0 11111111111111111 6 6 22222 44 3 999999 7 3 6 4444 6 55 0 8888 666 5 6 3 3 0 0 0 333 888888888 0 1 3 6 3333333333 1 22 5 5 1
lowQualScore : . . . . .. .. ... . ... ..... . ..... .. . . .. . .............. ... . . ............... .... . . . . . .......... . . .. . . . ................. . . ..... .. . ...... . . . .... . .. . .... ... . . . . . . . ... ......... . . . . .......... . .. . . .
lowQualScore : 0 7 6 6 11 22 444 6 222 11111 6 00000 55 0 0 55 0 00000000000000 888 5 1 444444444444444 9999 0 0 4 5 9 0000000000 2 4 33 0 5 4 11111111111111111 7 7 22222 55 7 222222 3 2 7 2222 7 88 0 8888 777 7 7 3 2 0 8 7 333 000000000 7 0 3 7 3333333333 0 00 5 5 0
consensus : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AAT---TTTC---GGGGGGG-AGGGGGGCATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Reference ( family-3713 ) : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AAT---TTTCGGGGGGGGGGNAGGGGGGC-TG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
gi|1 : ACCTGTCAAG-TTTCACGGTTTCGCCGTGAGTCCC-A-CG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCACTTAAAACA-----AA--G-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAAACGGTAAAAAAAT---------TGGTTAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|1 : atACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAA-AAAAAATTCGGGGGGGGGGGGGGGGGGGCATG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGGGtcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatAAACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGaaattaagatgca
gi|11 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcACCTGTTAAA-TCTCACGGATTTTCTGTGAGCCTC-A-CACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAATTGAAACA-----AA--AGTTTA-G-A--AAATGAa
gi|12 : tGTGAGTCTCGA-CC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCATTTAAAACA-----AA--A-TGCACG-A--AAATAAATA------C-------TATTG---CTTTATGAATAAATg
gi|13 : tACTTACCAAG-TCCCACGGTAACGC--------TC-A-TT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTt
gi|14 : tCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCAAAtttatcatcattaatgaaata
gi|15 : GAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGCagttt
gi|16 : ACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------cgtaa
gi|2 : ACCTAACAAG-TCTCACGGTTTCGCCATGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCATG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCATTACCCG--GTCAATGTTAACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAA-AAT---TTTC-----------AGACGGGCATG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATTtc
gi|3 : ACCTGTCAA--TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAA
gi|3 : tTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|4 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCTGTTAAGGTGTCACAGTTCTTCTGT----CTC-A-C--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA--AAAACAAGCACAA--A-TTTACATA--AAATAA--A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG---ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGTAC----------A-AATA-A--AACACGAAATATAT--TTA-----TATACATGT-AATA-----------------AAT-T--ATG----AT-----TACAAAAATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGG-AAC---T
gi|5 : acACCTGTCAAT-TCTCACCATTTCTCCACGAGCAAC-A-TGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTAA---AAATA-----AATAA-TGTATA-A--AAATGGATAAAA---CAAAAAAATATAGAGATTTTATGAA-AAATCGTTAA-----T---------TA-CTCTTGAATTTAGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----------------CA---TAAG-A-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|6 : tACCTGTCAAG-TCTCACGGTTCCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAATTA------C-------TATGG---TTTTATGAATAAATCGG--------T---------TG----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGTAT----------ATAAT--------ACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|7 : atACCTGTCAAG-CCTCACCGTTTCCCAGTGAGTCTC-ACCC-ATTTT--GCAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAAATAAAACA-----AA--A-TGCAT--ACTGAATAGGTACTGGATC-------TATGA---CTTCATGAATAAATC-----ATACATTTTTATTGCTGGTTTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGTAT----------Atcatggcgtcgtctgcta
gi|8 : atACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTGTTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAATCAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGT
gi|9 : atATACTAACACATATTA-ATCGTTACCCGGTGTCAATTTAAACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATT---TTTC---GGGGGGGTAGGGGGGC-TGCCCCCCGAAACCCCCTAGAA
Alignments
lowQualScore : 11 11111 22222222222222 222222222222222 1 2222222222 33333333333333333 22222 111111 1111 1 11 1 33333 1 1 1 222 333333333 1 2 1111111111 1 1
lowQualScore : 4 0 3 3 00 44 666 3 555 99999 3 00000 55 4 4 55 1 55555555555555 777 2 0 000000000000000 4444 0 5 0 2 1 5555555555 3 1 22 5 2 0 11111111111111111 6 6 22222 44 3 999999 7 3 6 4444 6 55 0 1 33 6 3 33333 7 3 3 0 0 0 333 888888888 0 1 3 6 3333333333 1 22 5 5 1
lowQualScore : . . . . .. .. ... . ... ..... . ..... .. . . .. . .............. ... . . ............... .... . . . . . .......... . . .. . . . ................. . . ..... .. . ...... . . . .... . .. . . .. . . ..... . . . . . . ... ......... . . . . .......... . .. . . .
lowQualScore : 0 7 6 6 11 22 444 6 222 11111 6 00000 55 0 0 55 0 00000000000000 888 5 1 444444444444444 9999 0 0 4 5 9 0000000000 2 4 33 0 5 4 11111111111111111 7 7 22222 55 7 222222 3 2 7 2222 7 88 0 2 88 7 3 33333 3 3 2 0 8 7 333 000000000 7 0 3 7 3333333333 0 00 5 5 0
consensus : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Reference ( family-3713 ) : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
gi|1 : ACCTGTCAAG-TTTCACGGTTTCGCCGTGAGTCCC-A-CG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCACTTAAAACA-----AA--G-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAAACGGTAAAAAAAT---------TGGTTAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|1 : atACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAA-AAAAAATTCGGGGGGG-GGGGGGGGGGGGCATG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGGGtcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatAAACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGaaattaagatgca
gi|11 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcACCTGTTAAA-TCTCACGGATTTTCTGTGAGCCTC-A-CACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAATTGAAACA-----AA--AGTTTA-G-A--AAATGAa
gi|12 : tGTGAGTCTCGA-CC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCATTTAAAACA-----AA--A-TGCACG-A--AAATAAATA------C-------TATTG---CTTTATGAATAAATg
gi|13 : tACTTACCAAG-TCCCACGGTAACGC--------TC-A-TT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTt
gi|14 : tCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCAAAtttatcatcattaatgaaata
gi|15 : GAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGCagttt
gi|16 : ACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------cgtaa
gi|2 : ACCTAACAAG-TCTCACGGTTTCGCCATGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCATG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCATTACCCG--GTCAATGTTAACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAA-AATT--TTC--------AGACGGG-----CATG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATTtc
gi|3 : ACCTGTCAA--TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAA
gi|3 : tTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|4 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCTGTTAAGGTGTCACAGTTCTTCTGT----CTC-A-C--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA--AAAACAAGCACAA--A-TTTACATA--AAATAA--A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG---ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGTAC----------A-AATA-A--AACACGAAATATAT--TTA-----TATACATGT-AATA-----------------AAT-T--ATG----AT-----TACAAAAATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGG-AACT--
gi|5 : acACCTGTCAAT-TCTCACCATTTCTCCACGAGCAAC-A-TGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTAA---AAATA-----AATAA-TGTATA-A--AAATGGATAAAA---CAAAAAAATATAGAGATTTTATGAA-AAATCGTTAA-----T---------TA-CTCTTGAATTTAGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----------------CA---TAAG-A-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|6 : tACCTGTCAAG-TCTCACGGTTCCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAATTA------C-------TATGG---TTTTATGAATAAATCGG--------T---------TG----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGTAT----------ATAAT--------ACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|7 : atACCTGTCAAG-CCTCACCGTTTCCCAGTGAGTCTC-ACCC-ATTTT--GCAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAAATAAAACA-----AA--A-TGCAT--ACTGAATAGGTACTGGATC-------TATGA---CTTCATGAATAAATC-----ATACATTTTTATTGCTGGTTTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGTAT----------Atcatggcgtcgtctgcta
gi|8 : atACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTGTTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAATCAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGT
gi|9 : atATACTAACACATATTA-ATCGTTACCCGGTGTCAATTTAAACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATTT--TTCGGGGGGGTAGGGGGG-----C-TGCCCCCCGAAACCCCCTAGAA
Alignments
lowQualScore : 11 11111 22222222222222 222222222222222 1 2222222222 33333333333333333 22222 111111 1111 1 11 1 33333 1 1 1 222 333333333 1 2 1111111111 1 1
lowQualScore : 4 0 3 3 00 44 666 3 555 99999 3 00000 55 4 4 55 1 55555555555555 777 2 0 000000000000000 4444 0 5 0 2 1 5555555555 3 1 22 5 2 0 11111111111111111 6 6 22222 44 3 999999 7 3 6 4444 6 55 0 1 33 6 3 33333 7 3 3 0 0 0 333 888888888 0 1 3 6 3333333333 1 22 5 5 1
lowQualScore : . . . . .. .. ... . ... ..... . ..... .. . . .. . .............. ... . . ............... .... . . . . . .......... . . .. . . . ................. . . ..... .. . ...... . . . .... . .. . . .. . . ..... . . . . . . ... ......... . . . . .......... . .. . . .
lowQualScore : 0 7 6 6 11 22 444 6 222 11111 6 00000 55 0 0 55 0 00000000000000 888 5 1 444444444444444 9999 0 0 4 5 9 0000000000 2 4 33 0 5 4 11111111111111111 7 7 22222 55 7 222222 3 2 7 2222 7 88 0 2 88 7 3 33333 3 3 2 0 8 7 333 000000000 7 0 3 7 3333333333 0 00 5 5 0
consensus : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Reference ( family-3713 ) : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
gi|1 : ACCTGTCAAG-TTTCACGGTTTCGCCGTGAGTCCC-A-CG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCACTTAAAACA-----AA--G-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAAACGGTAAAAAAAT---------TGGTTAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|1 : atACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAA-AAAAAATTCGGGGGGG-GGGGGGGGGGGGCATG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGGGtcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatAAACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGaaattaagatgca
gi|11 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcACCTGTTAAA-TCTCACGGATTTTCTGTGAGCCTC-A-CACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAATTGAAACA-----AA--AGTTTA-G-A--AAATGAa
gi|12 : tGTGAGTCTCGA-CC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCATTTAAAACA-----AA--A-TGCACG-A--AAATAAATA------C-------TATTG---CTTTATGAATAAATg
gi|13 : tACTTACCAAG-TCCCACGGTAACGC--------TC-A-TT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTt
gi|14 : tCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCAAAtttatcatcattaatgaaata
gi|15 : GAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGCagttt
gi|16 : ACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------cgtaa
gi|2 : ACCTAACAAG-TCTCACGGTTTCGCCATGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCATG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCATTACCCG--GTCAATGTTAACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAA-AATT--TTC--------AGACGGG-----CATG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATTtc
gi|3 : ACCTGTCAA--TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAA
gi|3 : tTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|4 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCTGTTAAGGTGTCACAGTTCTTCTGT----CTC-A-C--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA--AAAACAAGCACAA--A-TTTACATA--AAATAA--A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG---ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGTAC----------A-AATA-A--AACACGAAATATAT--TTA-----TATACATGT-AATA-----------------AAT-T--ATG----AT-----TACAAAAATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGG-AACT--
gi|5 : acACCTGTCAAT-TCTCACCATTTCTCCACGAGCAAC-A-TGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTAA---AAATA-----AATAA-TGTATA-A--AAATGGATAAAA---CAAAAAAATATAGAGATTTTATGAA-AAATCGTTAA-----T---------TA-CTCTTGAATTTAGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----------------CA---TAAG-A-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|6 : tACCTGTCAAG-TCTCACGGTTCCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAATTA------C-------TATGG---TTTTATGAATAAATCGG--------T---------TG----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGTAT----------ATAAT--------ACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|7 : atACCTGTCAAG-CCTCACCGTTTCCCAGTGAGTCTC-ACCC-ATTTT--GCAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAAATAAAACA-----AA--A-TGCAT--ACTGAATAGGTACTGGATC-------TATGA---CTTCATGAATAAATC-----ATACATTTTTATTGCTGGTTTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGTAT----------Atcatggcgtcgtctgcta
gi|8 : atACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTGTTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAATCAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGT
gi|9 : atATACTAACACATATTA-ATCGTTACCCGGTGTCAATTTAAACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATTT--TTCGGGGGGGTAGGGGGG-----C-TGCCCCCCGAAACCCCCTAGAA
blockSeqs : G G C AC CG TTC A ATG TGATG T AGCAC TA G T CT A AAACAAAAAAA AGA G ATACATTTTTATTGC GTTT A T C T ATAATATAAT T T CT T G TCATGGCGTCGTCTGCT G T TTTGG AA T CTTAAC T A T CCTT A CA T T . G T . A C A C . CAGGCA A . G CACCCACTAC C TT A A T
blockSeqs : . . . GC G . . G . T . . . . . A CTGGATC . G AAACAT GTTC T . C T . T T CT . G . . . TTTAG AA T . T A . . . TG . C . . . . . . G . . CA T . . CACTA A
blockSeqs : . . . C A . . A . C . . . . . A C . G AAACAT GTTT . . A A . T T CA . G . . . TCTGA AC A . T A . . . TG . T . . .
blockSeqs : . . . T G . . G . T . . . . . A C . G AATCAT GTTC . . C T . . T CT . G . . . TTG GC A . . A . . . CA .
blockSeqs : . . . G G . . A . T . . . . . T C . G ATAC CTC . . A A . . . . . . . . . . CA T . . . . . . .
blockSeqs : . . . G G . . G . T . . . . . G C . . T G . . C . . . . . . .
blockSeqs : . . . G G . . A . A . . . . . A C . . T . . . . . . .
blockSeqs : . . . C G . . A . T . . . . . . C . .
blockSeqs : . . . G . . . A . . . . . . .
blockSeqs : . . . . . . A . .
blockSeqCons : TTTGG AA
originalCons : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
finalCons : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Alignments
lowQualScore : 11 11111 22222222222222 222222222222222 1 2222222222 33333333333333333 22222 111111 1111 1 11 1 33333 1 1 1 222 333333333 1 2 1111111111 1 1
lowQualScore : 4 0 3 3 00 44 666 3 555 99999 3 00000 55 4 4 55 1 55555555555555 777 2 0 000000000000000 4444 0 5 0 2 1 5555555555 3 1 22 5 2 0 11111111111111111 6 6 22222 44 3 999999 7 3 6 4444 6 55 0 1 33 6 3 33333 7 3 3 0 0 0 333 888888888 0 1 3 6 3333333333 1 22 5 5 1
lowQualScore : . . . . .. .. ... . ... ..... . ..... .. . . .. . .............. ... . . ............... .... . . . . . .......... . . .. . . . ................. . . ..... .. . ...... . . . .... . .. . . .. . . ..... . . . . . . ... ......... . . . . .......... . .. . . .
lowQualScore : 0 7 6 6 11 22 444 6 222 11111 6 00000 55 0 0 55 0 00000000000000 888 5 1 444444444444444 9999 0 0 4 5 9 0000000000 2 4 33 0 5 4 11111111111111111 7 7 22222 55 7 222222 3 2 7 2222 7 88 0 2 88 7 3 33333 3 3 2 0 8 7 333 000000000 7 0 3 7 3333333333 0 00 5 5 0
consensus : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
Reference ( family-3713 ) : ACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------AAT-TTAATGAAA-ATTTTGGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACGCACCACAGACGATCTAGGGATCAAA-AATT--TTCGGGGGGG-AGGGGGG-----CATG-CCCCCGAAACCCCCTAGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTATGGGTA-TACGAA---TATTA----CA---ATGCGCATANTT-ACA-TCAACACCCACTACCTNCAGANNGATCTCTCCACTATTCAGTGCNATT
gi|1 : ACCTGTCAAG-TTTCACGGTTTCGCCGTGAGTCCC-A-CG-ATTTTG-GTAAT---GAAATCTC-GGTCTC--ACG-----CTGACTATGTAATTCCTCACGCATTTCACTTAAAACA-----AA--G-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAAACGGTAAAAAAAT---------TGGTTAGTGTATT-AGTTGTGTCTGACCTACTG-TTAGCTACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|1 : atACA-----------------AAT-TTAATGAAA-AT-------------------------GAAACTGTTGTAGCAAACA-C----CCTAG-AACACACCACAGACGATCTAGGAATCAAA-AAAAAATTCGGGGGGG-GGGGGGGGGGGGCATG-CCCCCGAAACCCCCTTGAATATTTTCTCACTCTAAGGTTCATTTGAGCCTTAACAGCTATGGGtcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatacaaatttaatgaaaatgaaactgttgtagcaaacaccctagaacacaccacagacgatctaggaatcaaaaaaaaattcgggggggggggggggggggcatgcccccgaaacccccttgaatattttctcactctaaggttcatttgagccttaacagctatgggaaattaagatgca
gi|10 : atacctgtcaagtttcacggtttcgccgtgagtcccacgattttggtaatgaaatctcggtctcacgctgactatgtaattcctcacgcatttcacttaaaacaaagttcacgaaaataaatactatggttttatgaataaaacggtaaaaaaattggttagtgtattagttgtgtctgacctactgttagctaccggaaccggtgttagtatataatatactaacacataataatcgttacccggtgtcaatgtaaacatcatggcggcgtctgcatcacatcacagcgttgctgtagctaaattactgtaaatttattacaccaaaatcatAAACA-----------------AAT-TTGATGAAA--TTTTGGTAAAATAATTG------ACTGAAACTGTTG--GAAAACA-C----CCCAG-AA-----CACAGACGATCAAGGaaattaagatgca
gi|11 : tcacatcacagcgttgctgtagctgaattactgtaaatttattacatcaaaatttgaaaaaataaatcACCTGTTAAA-TCTCACGGATTTTCTGTGAGCCTC-A-CACATTT---GAAATTTCAAGATTAC-TGTATTATGCGTGATGCTGACTGTGT--TTACTCGCGCATTTCAATTGAAACA-----AA--AGTTTA-G-A--AAATGAa
gi|12 : tGTGAGTCTCGA-CC-ATTTTG--CAAT---GAAATCAC-GGTCAT--GTG-----CTGACT--GTAATTTCTCATGCATTTCATTTAAAACA-----AA--A-TGCACG-A--AAATAAATA------C-------TATTG---CTTTATGAATAAATg
gi|13 : tACTTACCAAG-TCCCACGGTAACGC--------TC-A-TT-AT-----ACAAT---TAAATCAT-GGTCTC--ACG-----CTGACTATAAAATTTCTCACGCATATTAACTt
gi|14 : tCCTCGACAGCTATAGAGA-TCCAAAACGTATTA----TACGTATGCACATACTTAACATTCAACATCT----CCTTCAAAtttatcatcattaatgaaata
gi|15 : GAATATTTTCTCTCTCTAAGGTTCATTTCAGCCTTGACAGCTAT--GTA-TGCagttt
gi|16 : ACACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------cgtaa
gi|2 : ACCTAACAAG-TCTCACGGTTTCGCCATGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--GCG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCATG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTTGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGGTGTTAGTAT----------ATAATATACTAACACATAATA-ATCATTACCCG--GTCAATGTTAACA-----------------AAT-TTAATGAAA-ATTTTAGTAAAATAATTG------ACTGAAACTGTTGTAGAAAACA-C----CCCAG-AACACACCACAGGCGATCTAGGAATCAAA-AATT--TTC--------AGACGGG-----CATG-CCCCCGAAACCCCTTAGAATATTTTCTCACTCTAAGGTTTATTTGAGCCTTGACAGCTATGGGTA-TACAAA---TATTA----CA---ATGCACATAATT-ACAGTCAACACCCACTACCTCCAGAAAG-TTTCTCCACTATTT-GTGCAATTtc
gi|3 : ACCTGTCAA--TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAGT---GAAATCACAGGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAAACAT---------TGGTTCATATATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACAGGTGTTAGTATATAATATAATATAATATACTAACACATAATA-ATCGTTACCCGGTGTCAA
gi|3 : tTATTTTCTCACTCTAAGGTTCATTTGAGCCTTGACAGCTAT-GCTACCATGAA---TGGTACAGGCA---ATGGGCATATAT-ATA-TAAA----CACTA--TATAGATTGATCTTTCCACTATTCAGTACTATTactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattttctcactctaaggttcatttgagccttgacagctatgctaccatgaatggtacaggcaatgggcatatatatataaacactatatagattgatctttccactattcagtactatt
gi|4 : tacctgtcaatctcacggtttcgccgtgagtctcacgattttggcagtgaaatcacaggtctcacgctgactatgtaatttctcacgcatttcaattaaaacaaaattcacgaaaataaatactatggttttatgaataaatcggtaaaaacattggttcatatattagttgtgtctgacctaatgttagccaccggaacaggtgttagtatataatataatataatatactaacacataataatcgttacccggtgtcaaactcttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCTGTTAAGGTGTCACAGTTCTTCTGT----CTC-A-C--ATATTGCGCAAT---AAAATCAC-GCTCTA--GCA-----CTGATCATGCAATTTCTCATG-GTTTAAA--AAAACAAGCACAA--A-TTTACATA--AAATAA--A------C-------TA----------GTGAAT-AATC-TTAAATAC-----------TGG---ATGAATTAAGTTGAGTCTGGACCAAAG-TTTTCTA--GGAA-CGGTGTAGGTAC----------A-AATA-A--AACACGAAATATAT--TTA-----TATACATGT-AATA-----------------AAT-T--ATG----AT-----TACAAAAATTGCTTAACACTAAAA----TATAG-ATACATC----TCCAGAAATGCACCACTGACAACATATAGATCAGG-AACT--
gi|5 : acACCTGTCAAT-TCTCACCATTTCTCCACGAGCAAC-A-TGCATTTTG--TAAT---GAAATCAC-ACTCTC--ACG-----CTTAGCATGTATCTTCTCATGCATTTTAA---AAATA-----AATAA-TGTATA-A--AAATGGATAAAA---CAAAAAAATATAGAGATTTTATGAA-AAATCGTTAA-----T---------TA-CTCTTGAATTTAGTTGCCACCAACTTAATG-TT---TTCTGGAAACG-----------------------ACATACATACACATTATA----------------CA---TAAG-A-----------------AAT-ATAAC-AAA-ATTCTGATGCAAAAATTG------CTTAACCCTGTTG-GGAAATCG-CCCTTCCCAG-AATGCACC
gi|6 : tACCTGTCAAG-TCTCACGGTTCCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACACATTTCAATTAAAACA-----AA--A-TTCACG-A--AAATAATTA------C-------TATGG---TTTTATGAATAAATCGG--------T---------TG----GTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCAGAACCGGTGTTAGTAT----------ATAAT--------ACATAATA-ATCGTTACCCGGTGTCAATGTAAACA-----------------
gi|7 : atACCTGTCAAG-CCTCACCGTTTCCCAGTGAGTCTC-ACCC-ATTTT--GCAAT---GAAATTAG-AGTCTC--ACG-----CTGATTATGTAATCACTCTCGCATTTCAAATAAAACA-----AA--A-TGCAT--ACTGAATAGGTACTGGATC-------TATGA---CTTCATGAATAAATC-----ATACATTTTTATTGCTGGTTTGAATATA-AGTTGTGCAAGACTCAATGTTTAGCCATCAGAAATGGTGTAAGTAT----------Atcatggcgtcgtctgcta
gi|8 : atACCTGTCAAG-TCTCACGGTTTCGCCGTGAGTCTC-A-CG-ATTTTG-GCAAT---GAAATCAC-GGTCTC--ACG-----CTGACTATGTAATTTCTCACGCATTTCTGTTAAAACA-----AA--A-TTCACG-A--AAATAAATA------C-------TATGG---TTTTATGAATAAATCGGTAAAATCAT---------TGGTTCGTGTATT-AGTTGTGTCTGACCTAATG-TTAGCCACCGGAACCGCTGT
gi|9 : atATACTAACACATATTA-ATCGTTACCCGGTGTCAATTTAAACATCATGGCGTCGTCTGCTAGTGCTAATGAAATATTT--GTCAAATAACTG------ACTGAAACTGTTGTAGAAAACA-C----CACAG-AACAAACCACAGACGATCTAAGGGTCAAATATTT--TTCGGGGGGGTAGGGGGG-----C-TGCCCCCCGAAACCCCCTAGAA