lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 111 1 7777777777777 1 2 111 1 22 22 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 111111111 11111 22222 1 22 111111111 00000000000000000000000000000000000000000000000000000000000000 2 11 44
lowQualScore : 22 6 555 5 5 3 2 777 4 6 0000000000000 1 7 6 66 888 2 0 2 6 6 7 66 3 888 1 8 555 4 3 11 11 4 5 7 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 88 0 888888 6 555555555 6 666 66666 3 666 8888 555 00000 3 5 555 6666 00 2 77 2 666666666 22222222222222222222222222222222222222222222222222222222222222 6 1 8 5 33 55 99
lowQualScore : .. . ... . . . . ... . . ............. . . . .. ... . . . . . . .. . ... . . ... . . .. .. . . . ....................................................................................................................... .. . ...... . ......... . ... ..... . ... .... ... ..... . . ... .... .. . .. . ......... .............................................................. . . . . .. .. ..
lowQualScore : 00 5 999 0 2 8 9 888 4 0 8888888888888 2 5 0 88 888 9 8 0 0 0 1 66 4 888 5 9 666 4 8 66 44 3 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 7 888888 0 333333333 0 444 33333 6 444 1111 444 99999 7 0 444 1111 33 9 00 8 000000000 33333333333333333333333333333333333333333333333333333333333333 7 0 6 7 66 00 88
consensus : GAGCCCCAGATAATATTTTN--A-GCCGATGAGTAATT---A-CTCATCAAAATCAGAGTAGATGAGTA-TCTC---GAG--TTTTTCAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTTGTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCTNATCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTTT--G--CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGG-CAAAATATGATG---------GGGT-----NTANNNCCAANCNTGGNCNANNTCCGGNCGCAANGAAAAGANAAATTCC-------GG-CTGAGTTT-GACTGGT--AAATTTCAATACCT-ATATATCTTA
Reference ( gi|1 ) : GAGCCTTAGATAAAATTTTT--A-GCCAAAGAGTAATT---A-CTCATCAAAATCAGAGTAGACGAGTA--CTC---AAGTTTTTTTCAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTTATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTTT--A--CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGG-TAAAACATGATG---------GGG------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC-------GA-CTAAG-TT-GACTGGT--AA--TTCAATACCT-ATATATCTTA
gi|6 : GAGCCCCAGGTAATTTTTTA--A-GCCGATGTGTAATT---A-CTCATCGAATTCAGAGTAGATGAGTA--TTCTT-GAGTTTTT--CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTTGTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|25 : aGAGCCCCAGATAATACATAA--A-GCTGATGACTCTTT---T-CTCATCAAAATCAGAGTAGATGAGTATTCTT---GAG--TTTTTCAGAATAGTGATGAGTATTGCATGT
gi|2 : aAGATCATATTTTA--A-GCCAATGAGTAATT---A-CTCATCAAAACCAGAGTAGATG-----------------TTGTTCAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TCA-TGTTGCATTATTATTAAATTATTATTTT--ATCAATGGCT---CAGGGAAA---CT------GCAATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTCTTTTTTTAGTT-AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|26 : acaATAACTTTTTT--A-GCTGATGAATAATT---A-CTCATCAAAATCAGAGTAGATGAGTATTCTT---GAG--TTTTTCAGAATAGTAATGAGTAATGCACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|7 : aATCTTT--AAGCTGATGAGTAGTT---A-CTCATCAAAATCAGAGGAATTTAGTG--TTCTT-GAGTTTTTG-CAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTTGTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|15 : atttgttATTTTTCAA-GCCGATGATTAATT---A-CTGATCAAAATCAGAGTAGATGAGTATTCTT---GAG--TTTTTCAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTTAa
gi|28 : gatcATTTTTTAA-GCCGATGAGTAATT---AATTCATCAAAATCCGAGTAGATGAGTA-----------TTTTTTT
gi|13 : tagccccactt--A-GCCCCAGA-TAATTTCAA-CACATCAAAATCAGAGTAGATAAGTA--TTCTTGAA---TTTTTCAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCatgtt
gi|8 : agGAGTAATT---A-ATCATCAAAATCAGAGTAGATGAATATTCTT---GAG--TTTTTCAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAA
gi|3 : actgatATCAAAGTAGATGAGCA--TTCTT-GAGTTTTT--CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTTGTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|27 : TCAGAGTAGATGAGTAATCTT---GAG--TTTTTCAGAAGTGTGACGAGTaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|32 : aggtccatcaataattttttggccattgtaaaaactattTTTTTCAGAATAGTAATGAGTAATGCGCATAT
gi|11 : tattcttgagGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTTGTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATAC
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CT------GCAATTGCTTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTTGTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|30 : TTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|8 : gATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGG----TCTTTGTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCctt
gi|4 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaa-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCTGTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTTT--G--CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGG-TAAAATATGACG---------GAG------GTGGCTCTAAAACTTGGCCATGTTCGTACCCCAACTGCAAGTAAAAGACAAATTCTGA-CTGAGTTT-GACTGGT--AGATTTCAATAC---ATATATTTTA
gi|29 : AACCATG---GGTT-GTTTTTGTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATAC
gi|2 : ACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGACAAA--------CTTA-TTTAGTTTGCTTTCAATT----T---TTTT--A--TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTTCAAAACTAAAACaca
gi|5 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTTT--G--CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGG-CATAATATGATG---------tcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|3 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnC------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT-G--CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACG-CAAAATAAGATG---------G
gi|14 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTTT------------TTTGT-GTCA-TGTATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACG-CAAAATATGATG---------a
gi|23 : gAACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------TT--G--CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGG-CAAAATATGAT
gi|9 : CATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTTT--G--CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAG-AAAAGTGTGATACTAAAACATGGGTCAT--ATTCCGACTGGCTTGGCCACATTCCGATTGCAACAAAAATACACATCCC-------GG-CCGAGTTT-GACTGGT--AAATTTCAATAC
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTTT--G--CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTC---G-T-GAATATGAtgt
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTTT--G--ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGG-CCAAATATGAT
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTTTTTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACG-CTTCCTTTCGGGG-CAAAACATAATG---------GGGT-----AGATACTAAATCTTGGCCATGTTCCGGCTGCAAGGAAAAGACAAGTTCC-------GG-CTACGTTT-GACTGATC-AAT-TTCAATACCT-ATAT
gi|21 : aG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT-G--CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGG-CAAAATATAATctt
gi|24 : -T---TTTT--G--CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGG-CAAAACATAATG---------GGG------t
gi|12 : ttt-T---TTTT--G--CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG-----AAAATATGATG---------GGatggttctaaaactcggccatgt
gi|17 : GTCAGTTTATAG----ACG-CTTATTTTCAAGG-CAAAATATAATG---------GGT------TTAATACTAACAATCTACCATGTTCTGGCGGCAAAGAAAAGACAAATTC-------CAGCTAAGTTT-GACTGGT--AAATTTCAATATC---TGTATCTTAatgataagttaaccatgttctgactagccctgccacattccggctgcaaggaaaagacaaattctggctgatattgacaacttaatttcaatatatatcttatttccc
gi|20 : TTTCTTTTCAAGG-CAAAATATGATG---------GGGTGATACTAAAACTCGGCCATGTTCGAACTCTGGCTGCAATGAAAAGAAAAATTCT-------GA-CTGAGTTT-GACTGGTAAAA--TTCAATACCT-ATA
gi|31 : tC-------GG-CTGAG-TTTGATTAGT--AAATTTTAATACCT-ATAcct
gi|33 : aaagacaaattc-TT-AACTGGT--AAATTTCAATACCTAAAATATCTTA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TCTGTTTTTAGACACTTTCTTATTTAGGCAAAATACGATGGGAATTGTACTAAAACTTGGCCATGTTCCTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGACGAGTTTGATTGGTAAATTTCAAAACCTTT
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Unaligned ( gi|34 ): ACAGAGCCCCAGATAATTTTTTCAGCTGTTGTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 55555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 3 3 1 0 3 444 5 77 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 888888 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 77777777777777777777777777777777777777777777777777777777777777777777 1 1 4 4
lowQualScore : . . . . . ... . .. ... . . . . ... . ... . . . .. ...................................................................................................................... . ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... .................................................................... . . . .
lowQualScore : 8 6 0 5 6 333 4 99 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888888 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 88888888888888888888888888888888888888888888888888888888888888888888 0 0 0 4
consensus : GAGCCCCAGATAATNT-TTTNAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTA-TTCTTGAGTTTTT--CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACC------ATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G----TANNNC-T-A--ANCNTG----GNCNA----------GTTCC------GGCT-------GCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATAT-TTTNAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTA-T-CTCGAGTTTTT--CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCTNATC------ATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-N----TANNNC-C-A--ANCNTG----GNCNA----------NNTCC------GGNC-------GCAANGAAAAGANAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAAT-TTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA---CTCAAGTTTTTTTCAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACC------ATGACCTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG----N----NNNNNN-N-N--NNNNNN----NNNNN----------NNNNN------NNNN-------NNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGG--T-A----GATACT-A-A--ATCTTG----GCCAT----------GTTCC------GGCT-------GCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGA--TGA----TAAGT--T-A--ACCATGTTCTGACTAGCCCTGCCACATTCC------GGCT-------GCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAAT----TTCA---------------ACACATCAAAATCAGAGTAGATAAGTA-TTCTTGAATTTTT--CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTT-TTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATT-CTTGAGTTTTT--CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGAATT-G----TACTA----A--AACTTG----GCCAT----------GTTCCTACTTCGGCT-------GCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGG--T-T----TAATAC-T-A--ACAATC----TACCAT---------GTTCT------GGCG-------GCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATAT-TTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGAT-------------GTTGTT--CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATC------ATGACCTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAA-----------------------C----TAAAACTC-A--GCCATG----TTCAG----------ACTCA------GACT-------GCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGG--T-GATACTAAAACTC-G--GCCATG----TTCGA----------ACTCT------GGCT-------GCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG----A----TGGTTC-T-A--AAACTC----GGCCA----------TGT
gi|25 : tttGAGCCCCAGATAATAC-ATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATT-CTTGAGTTTTT--CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTT-TTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATT-CTTGAGTTTTT--CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAAT-T-TTTTGGCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAAT-CTTGAGTTTTT--CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTATT-T-TTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTA-T-TT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttttatgtt
gi|3 : ATCAAAGTAGATGAGCA-TTCTTGAGTTTTT--CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : CCTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : -T-CTTGAGTTTTT--CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : tatGTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTT-TTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG----G----TGGCTC-TAA--AACTTG----G-CCA----------TGTTC------GTACCCCAACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACC------ATGACCTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTT-TTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTA-TTCTTGAGTTTTT--CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTATCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTG-TTCTTGAGTTTTTG-CAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgtCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATA-TTCTTGAGTTTTT--CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGG--TCA----TATTCC-G-ACTGGCTTG----GCCAC----------ATTCC------GATT-------GCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 4 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 555555555555555555555555555555555555555555555555555555555555555 4 4
lowQualScore : . . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ............................................................... . .
lowQualScore : 9 0 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 000000000000000000000000000000000000000000000000000000000000000 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G----TANNNCT-A--ANCNTG----GCCAN-G----------TT------CC------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATNTTTTNAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G----TANNNCT-A--ANCNTG----GNCNA-G----------TT------CC------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG----N----NNNNNNN-N--NNNNNN----NNNNN-N----------NN------NN------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGG--T-A----GATACTA-A--ATCTTG----GCCAT-G----------TT------CC------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGA--T-GA---TAAGT-T-A--ACCATGTTCTGACTA-GCCCTGCCACATT------CC------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAAT---TTCA---------------ACACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGAATT-G----TACTA---A--AACTTG----GCCAT-G----------TT------CCTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGG--T-T----TAATACT-A--ACAATC----TACCATG----------TT------CT------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC---------------------------TAAAACTCA--GCCATG----TTCAG-A----------CT------CA------GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGG--T-GATACTAAAACTCG--GCCATG----TTCGA-A----------CT------CT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG----A----TGGTTCTAA--AACTCG----GCCAT-G----------T
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG----G----TGGCTCTAA--AACTTG----GCCAT-G----------TTCGTACCCC------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttatcCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGG--TCA----TATTCCG-ACTGGCTTG----GCCAC-A----------TT------CC------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 444444444444444444444444444444444444444 22222222222222222222
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 444444444444444444444444444444444444444 1 77777777777777777777 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ....................................... . .................... . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 555555555555555555555555555555555555555 0 11111111111111111111 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TANTNCT-A--AN-CTT-G--------------GCCACGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TANNNCT-A--AN-CNT-G--------------GCCANGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG----N-NNNNNNN-N--NN-NNN-N--------------NNNNNNNN------N------N------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGG--T-A-GATACTA-A--AT-CTT-G--------------GCCATGTT------C------C------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGA--T-GATAAGT-T-A--AC-CAT-GTTCTGACTAGCCCTGCCACATT------C------C------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGAATT-G-TACTA---A--AA-CTT-G--------------GCCATGTT------C------CTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGG--T-T-TAATACT-A--AC-AATCT--------------ACCATGTT------C------T------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC------------------------TAAAACTCA--GC-CAT-G--------------TTCAGACT------C------A------GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGG--T-G---ATACT-A--AAACTC-G--------------GCCATGTT------CGAACTCT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG----A-TGGTTCTAA--AA-CTC-G--------------GCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG----G-TGGCTCTAA--AA-CTT-G--------------GCCATGTTCGTACCC------C------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGG--TCA-TATTCCG-ACTGG-CTT-G--------------GCCACATT------C------C------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 5555555555555555555555555555555555555555 33333333333333333333
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 1111111111111111111111111111111111111111 2 99999999999999999999 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ........................................ . .................... . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 4444444444444444444444444444444444444444 3 99999999999999999999 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TANTNCT---A--AA-CTCG--------------GCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TANTNCT---A--AN-CTTG--------------GCCACGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG----N-NNNNNNN---N--NN-NNNN--------------NNNNNNNN------N------N------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGG--T-A-GA-TACT---A--AATCTTG--------------GCCATGTT------C------C------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGA--T-GATAA-GTT---A--AC-CATGTTCTGACTAGCCCTGCCACATT------C------C------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGAATT-G-TACTA-----A--AA-CTTG--------------GCCATGTT------C------CTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGG--T-T-TAATACTAACA--AT-CT----------------ACCATGTT------C------T------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC------------------------TA--------A--AA-CTCA--------------GCCATGTT------CAGA---CTCA---GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGG--T-G---ATACT---A--AAACTCG--------------GCCATGTT------CGAACTCT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG----A-TGGTTCTA--A--AA-CTCG--------------GCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG----G-TGGCTCTA--A--AA-CTTG--------------GCCATGTTCGTACCC------C------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGG--TCA-TATTCCG---ACTGG-CTTG--------------GCCACATT------C------C------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 55555555555555555555555555555555 33333333333333333333
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 66666666666666666666666666666666 99999999999999999999 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ................................ .................... . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 11111111111111111111111111111111 99999999999999999999 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TA----------GTNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGG--T-G-TA----------NTNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG----N-NN----------NNNNN-N---N-N-NNNNNNNNNNNN------N------N------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGG--T-A-GA-----------TACT-A---A-ATCTTGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGA--T-GATAAGTTAACCATGTTCT-GACTA-G-CCCTGCCACATT------C------C------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGAATT-G-TA----------CTA---A---A-A-CTTGGCCATGTT------C------CTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGG--T-T-TA----------ATACT-A---ACA-ATCTACCATGTT------C------T------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC------------------------TA----------------A---A-A-CTCAGCCATGTT------CAGA---CTCA---GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGG--T-G-------------ATACT-A---A-AACTCGGCCATGTT------CGAACTCT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG----A-TG----------GTTCTAA---A-A-CTCGGCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG----G-TG----------GCTCTAA---A-A-CTTGGCCATGTTCGTACCC------C------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGG--TCA-TA----------TTCCG-ACT-G-G-CTTGGCCACATT------C------C------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 5555555555555555555555555555555 33333333333333333333
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 6666666666666666666666666666666 99999999999999999999 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ............................... .................... . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 7777777777777777777777777777777 99999999999999999999 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGT-G-TA----------G-TNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGT-G-TA----------G-TNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG--N-NN----------N-NNNN-N---N-N-NNNNNNNNNNNN------N------N------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGGT----A----------GATACT-A---A-ATCTTGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGAT-GATAAGTTAACCATG-TTCT-GACTA-G-CCCTGCCACATT------C------C------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGA--A-TT----------G-TACT-A---A-AACTTGGCCATGTT------C------CTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGGT-T-TA----------A-TACT-A---ACA-ATCTACCATGTT------C------T------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC----------------------TA-----------------A---A-A-CTCAGCCATGTT------CAGA---CTCA---GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGGT-G-------------A-TACT-A---A-AACTCGGCCATGTT------CGAACTCT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG--A-TG----------G-TTCTAA---A-A-CTCGGCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG--G-TG----------G-CTCTAA---A-A-CTTGGCCATGTTCGTACCC------C------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGGTCA-TA----------T-TCCG-ACT-G-G-CTTGGCCACATT------C------C------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 111111111 5555555555555555555555555555555 33333333333333333333
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 222222222 6666666666666666666666666666666 99999999999999999999 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ......... ............................... .................... . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 333333333 7777777777777777777777777777777 99999999999999999999 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGT-G-TA----------G-TNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGT-G-TA----------G-TNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATG---------GGG--N-NN----------N-NNNN-N---N-N-NNNNNNNNNNNN------N------N------NNNNNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGCTTCCTTT-CGGGGCAAAACATAATG---------GGGT----A----------GATACT-A---A-ATCTTGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATG---------GGAT-GATAAGTTAACCATG-TTCT-GACTA-G-CCCTGCCACATT------C------C------GGCTGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG---------
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATG---------GGA--A-TT----------G-TACT-A---A-AACTTGGCCATGTT------C------CTACTTCGGCTGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAAT----------GGGT-T-TA----------A-TACT-A---ACA-ATCTACCATGTT------C------T------GGCGGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAAAC----------------------TA-----------------A---A-A-CTCAGCCATGTT------CAGA---CTCA---GACTGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATG---------GGGT-G-------------A-TACT-A---A-AACTCGGCCATGTT------CGAACTCT------GGCTGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATG---------GGG--A-TG----------G-TTCTAA---A-A-CTCGGCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATG---------Gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACG---------GAG--G-TG----------G-CTCTAA---A-A-CTTGGCCATGTTCGTACCC------C------AACTGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATG---------atcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGTGTGATACTAAAACATGGGTCA-TA----------T-TCCG-ACT-G-G-CTTGGCCACATT------C------C------GATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
blockSeqs : A A . G ATT C A T A GTT A AAA T T TA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TG CATGAC C CTTTTTT TTT CGAA T CAA TAG GTT T TTT TATT GAC GTCT CTAAAACAT TGATAAGTTAACCATGTTCTGACTAG CCTACTTC T A
blockSeqs : A . . . . C A T T . A TAA . . . NA . . . . ACA . . AGT . T . . . . . TCATATTCCGACTGG CAGACTCA . .
blockSeqs : A . . . . A G T A . . . . . . TT . . . . CA . . AG . . . . . . . TTTAATACTAACA CGAACTCT . .
blockSeqs : T . . . . G T C A . . . . . . . . . . TA . . TG . . . . . . . TAGATACTAAAT CGTACCCC . .
blockSeqs : G . . . . G G . A . . . . . . . . . CA . . AG . . . . . . . ATTGTACTAAAA CC . .
blockSeqs : A . . . . G G . A . . . . . . . . . CG . . AT . . . . . . . ATGGTTCTAAAA CC . .
blockSeqs : C . . . . G A . T . . . . . . . . . TG . . AG . . . . . . . GTGGCTCTAAAA CT . .
blockSeqs : A . . . . . . . . . . . . . . . CA . . AT . . . . . . . TGATACTAAAA CC . .
blockSeqs : A . . . . . . . . . . . . CA . . AG . . . . . . . TAAAA .
blockSeqs : . . . . . TG . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : ** TGGTACTAAAA******************** CACTC***************
originalCons : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGT-G-TA----------G-TNCT-A---A-A-CTCGGCCATGTT------C------C------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
finalCons : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATG---------GGGTGGTACTAAAA--------------------CTCGGCCATGTTCACTC---------------GGCTGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 1111111 22222222222222222222222 66666666666666666666666666666
lowQualScore : 1 0 3 44 3 777 1 1 1 5 777 8 444 4 0 4 55 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 333333 4 3333333 555 55555 3 555 5555 555 5 555 6666 555 5555 0 00 88888888888888888888888 55 4 00000000000000000000000000000 4 4
lowQualScore : . . . .. . ... . . . . ... . ... . . . .. ...................................................................................................................... .. ...... . ....... ... ..... . ... .... ... . ... .... ... .... . .. ....................... .. . ............................. . .
lowQualScore : 5 5 6 66 3 888 6 1 2 1 888 0 000 0 7 0 55 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 0 0000000 888 44444 3 888 9999 000 7 000 1111 000 3333 1 22 33333333333333333333333 55 0 22222222222222222222222222222 0 4
consensus : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATGG-GG-T-GGTA-------------CTAA--AAC-TCGGCCATGTTC------G---CT-C-GGC-----------TGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
Reference ( family-3712 ) : GAGCCCCAGATAATTTTTTAAGCCGATGAGTAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTGAATTATTATTAAATTATTGTTTTTTATCAATGGCTAGCCAGGGAAA---CTGCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATCGTGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAA-CG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGTTTATAG----ACGCTTTCTTTTCGAGGCAAAATATGATGG-GG-T-GGTA-------------CTAA--AAC-TCGGCCATGTTC------A---CT-C-GGC-----------TGCAAGGAAAAGACAAATTCCGGC-TGAGTTTGACTGGTAAATTTCAATACCT-ATATATCTTA
gi|1 : GAGCCTTAGATAAAATTTTTAGCCAAAGAGTAATT-ACTCATCAAAATCAGAGTAGACGAGTA--CTCAAGTTTTTTT-CAGAACAGTGATAAGTATTGCGTATATG---ATATACAACCAGTGCAGAGTTGACACTTCAATGTTAAATCATTATTAAACTATTGTTTTTTATCAATGGCTTGCCAGGGAAA---CTTCAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTATAGAACCATGATGGGTA-TTTTTT--ATTTGAATGCATGTTACATAATTGACCAATTCCTTCAATATACTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCCGACCATGAC------CTCAACAGAAACATC-A-------TCTTTTCTG---GTGAAAAA-TG--AA-CTTAATTTAGTTTGCTTT---TT-AG-T---TTT-T---A----CGTCATGTTTATAGTTAATTTGTT---GACAATCACATGTCAGTTTATAG----ACGATTTCTTTTCAAGGTAAAACATGATGG------GGNN-------------NNNN--NNN-NNNNNNNNNNNN------N---NN-N-NNN-----------NNNNNNNNNNNNNNNNNNNNCGAC-TAAG-TTGACTGGTAA--TTCAATACCT-ATATATCTTA
gi|10 : TTTTTTT---GTGAAAAA-CA--AA-CTTAATT-ATTTAGTTTT---TT-AG-T---TTT-T---TTATTCGTCACATTTACAGTTTATTTGTT---GACAATCACATATCAGTTTATAC----ACGC-TTCCTTTCGGGGCAAAACATAATGG-GG-TAGATA-------------CTAA--ATC-TTGGCCATGTTC-------------C-GGC-----------TGCAAGGAAAAGACAAGTTCCGGC-TACGTTTGACTGATCAATTTCAATACCT-ATAT
gi|11 : aGAATAGTGGTGAGTATTGCGCATATG---GTATACAACCAGTGCACAGTTGACACTTCAATGTTAAATTATTATTTAATTATTGTTTTTTATCAATGGTTAGCCAGCAAAA---CTGCAATTGCCATTGCTTAATGGATAAATTT-GTCATTTATTTTAGAATCATCGCGGGTC-TTTTTT--GTTTGAATGCAGGTTACATGATTGGCCAATTTCTTCAATATACctt
gi|12 : -T---TTT-T---G----CATCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAATTTATTG----ACACTTTTTTCCCG----AAAATATGATGG-GA-T-GATAAGTTAACCATGTTCTGACTAGC-CCTGCCACATTC-------------C-GGC-----------TGCAAGGAAAAGACAAATTCTGGC-TGATATTGACAACTTAATTTCAA----T-ATATATCTTA
gi|13 : GAGCCCCAGATAATTT-------CAA-----------CACATCAAAATCAGAGTAGATAAGTATTCTTGAA--TTTTT-CAATATAGTGATGAGTATTGCGCATATG---ATATACAGTCAGTGCACAGTTGAAACTTCAATGTTAAATTATTGTTAAATTATTG-TTTTTATCtttccc
gi|14 : aGCAGAAACATCCACTTTTTTTTTTTTTTT---ATGAAAAA-TA--AA-CTTAATTTAGTTTGTTTT---TT-TG-T---TTT-TTTTG----TGTCATGT-------------ATT---GGCAGTCACATGTCAGTTTATAG----ACACTTTCTTTTCAACGCAAAATATGATG
gi|15 : GATCATTTTTCAAGCCGATGATTAATT-ACTGATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCACACATGATTATATACAACCAGTGCAAAGTTAACACTTCACTGTT
gi|16 : TCTGTTTTTAG----ACACTTTCTTATTTAGGCAAAATACGATGG-GAAT-TGTA-------------CTAA--AAC-TTGGCCATGTTCCT----A---CTTC-GGC-----------TGCAAGAAAAAAAAAGATTTGGGA-CGAGTTTGATTGGTAAATTTCAAAACCT-a
gi|17 : GTCAGTTTATAG----ACGCTT-ATTTTCAAGGCAAAATATAATGG-GT-TTAATA-------------CTAA--CAA-TCTACCATGTTC-------------T-GGC-----------GGCAAAGAAAAGACAAATTCCAGC-TAAGTTTGACTGGTAAATTTCAATATC---TGTATCTTAtt
gi|18 : ATA-A-------TCTTTTTTG---GTAAAAAAACA--AA-CTGAATTTAGTTTGTTTT---TT-AG-T---TTT-T---G----CATCATGTTTATAGTTTATTTGTT---GACAATCACATGTCAGTTTATAGGTCTATGCTTTCTGTTCGTG----AATATGA
gi|19 : TC-A-------TCTTTTTTA---GTGAAAAA--G--AA-CTTAATTTAGTTTGCTTT---TT-AT-T---TTT-T---G----ATTCATGTTTACAGTGTATTTGTT---GACAATCACATGTCAGTTTATAG----ACAGTTTCTTGTCGAGGCCAAATATGAT
gi|2 : AGATCATATTTTAAGCCAATGAGTAATT-ACTCATCAAAACCAGAGTAGATG-------TTG-------TT-CAAAATAGTAACGAGTATAGCTCCTATG---ATATGCAAACAGTA-------------TC-ATGTTGCATTATTATTAAATTATTA--TTTTATCAATGGCT---CAGGGAAA---CTGCA------ATTGCTTAATGA-T---TTT-GTGATTTATTTTAGAACCATCGTTGGTC-TTTTTTTAGTT--AATGCAGATTACATGATTGATCAATTCTTTCAATATACTCATG
gi|2 : acaACTCCTGATCATGAC------CTCAGAAGAAACATC-A-------TCTTTTTTG---GTGA-----CA--AA-CTTA-TTTAGTTTGCTTTCAATT----T---TTT-T---A----TGTCATGTTTACAGTTTATTTGTT---GACAATCACATGTCAGCTTATGG----ACACTTTCTTTT-----CAAA------------------A-------------CTAA--AAC-TCAGCCATGTTCAG----A---CT-CAGAC-----------TGCAAGGACAAAACAAATTCCGACTTGAGTTTGATTGGTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcctgatcatgacctcagaagaaacatcatcttttttggtgacaaacttatttagtttgctttcaatttttttatgtcatgtttacagtttatttgttgacaatcacatgtcagcttatggacactttcttttcaaaactaaaactcagccatgttcagactcagactgcaaggacaaaacaaattccgacttgagtttgattggtaaat
gi|20 : acaagatcatattttaagccaatgagtaattactcatcaaaaccagagtagatgttgttcaaaatagtaacgagtatagctcctatgatatgcaaacagtatcatgttgcattattattaaattattattttatcaatggctcagggaaactgcaattgcttaatgattttgtgatttattttagaaccatcgttggtctttttttagttaatgcagattacatgattgatcaattctttcaatatactcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTTTTCAAGGCAAAATATGATGG-GG-T-GATA-------------CTAA--AAC-TCGGCCATGTTCGA----A---CT-CTGGC-----------TGCAATGAAAAGAAAAATTCTGAC-TGAGTTTGACTGGTAAAATTCAATACCT-ATA
gi|21 : tG---GTGAAAAA-CG--AA-CTTAAGTTAGTTTGCTGT---TT-AG-T---TTTTT---G----CGTCATGGTTACAGTTTATTTGTT---GACAATTTCATATCAGTTTAAAG----ACATTTTCTCTTCGGGGCAAAATATAATcct
gi|23 : AACATC---------TTTTTTTTG------------TG--AA-CTTAATTCAGATGGTTTT---TT----------T-T---G----CATCATATTTACAGTTTATTTGTT---GACAATCACATGTCTGTTTATAG----AC---TTCGTTTCGAGGCAAAATATGATt
gi|24 : -T---TTT-T---G----CGTCACATTTACAGTTTATTTGTT---GGCAATCACATGTCAGTTAATAG----ATG--TTTTTTACCTGGCAAAACATAATGG-GGAT-GGTT-------------CTAA--AAC-TCGGCCATGT
gi|25 : tttGAGCCCCAGATAATACATAAAGCTGATGACTCTTT-TCTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGC
gi|26 : aATAACTTTTTTAGCTGATGAATAATT-ACTCATCAAAATCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCACATatgt
gi|27 : aATAATTTTTTG-GCCATTG--TAAAA-ACT-ATT----TCAGAGTAGATGAGTAATCTTGAG--TTTTT-CAGAAGTGTGACGAGT
gi|28 : aggtccatcaAGCCCCACTTA-TTTTTTAAGCCGATGAGTAATTAATTCATCAAAATCCGAGTAGATGAGTATTTTT
gi|29 : tAACCAT---GGGTT-GTTTTT--GTTTGAATGTAGGTTACGTGATTGACCAATTCATTCAATATACttatgtt
gi|3 : ATCAAAGTAGATGAGCATTCTTGAG--TTTTT-CAGAATAGTTATGAGTATTGCGCATATG---ATATACAACCAGTGCAGAGTTTACAAATTGTTGTTTAATTATTATTAAATTATTGTTTT-TATCAATGGCTTGCAAGGGAAA---CTGTAATTGCCATTGCTTAATGG-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TGTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTCCAATATACCCCTGAaca
gi|3 : C------CTCAGCAGAAACATG-A-------TCTTTTTTG---GTGAAAAA-CA--AA-CTTTATTTAGTTTGCTTT---TTTAG-T---TTTTT---G----CGTCATGTTTACAGTTTATTTGTT---GACAATCACACGTCAGTTTATAG----ACGCTTTCTTTTCAACGCAAAATAAGATGG-ccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctcagcagaaacatgatcttttttggtgaaaaacaaactttatttagtttgcttttttagttttttgcgtcatgtttacagtttatttgttgacaatcacacgtcagtttatagacgctttcttttcaacgcaaaataagatgga
gi|30 : atcaaagtagatgagcattcttgagtttttcagaatagttatgagtattgcgcatatgatatacaaccagtgcagagtttacaaattgttgtttaattattattaaattattgtttttatcaatggcttgcaagggaaactgtaattgccattgcttaatggttttgtcatttattttagaaccattgtgggtctgttttgtttgaatgcaggttacatgactgaccaattcctccaatatacccctgaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAACA---GCTAGCCAGGGAAA---CTGCAATTGTCATTGTTTAATGG-T---TTT-GTCTTTTATCTTa
gi|31 : gAAAGACAAATTCCGGC-TGAGTTTGATTAGTAAATTTTAATACCT-ATA
gi|32 : TATTCTTGAG--TTTTT-CAGAATAGTAATGAGTAATGCGCATAT
gi|33 : GTTTAACTGGTAAATTTCAATACCTAAAATATCTTA
gi|34 : GAGCCCCAGATAATTTTTTCAGCTGTTGtttca
gi|4 : aca-T---TTT-GTCATTTATTTTAGAACCATTGTGGGTC-TTTCCT--GTTTGAATGCAGGTTACATGATTGACCAATTCCTTCAATATACTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTGACCATGACCTCAGCAGAAACATC-A-------TCTTTTTTG---GTGAAAAT-CGAAAA-C-AAATCTAGTTTGCTTA---TT-AGTT---TTT-T---G----CATCATGTTTACAGTTTATTTGTTGACGACAATCACATATCACTTTATAA----ACGCTTTCTTCTCAAGGTAAAATATGACGGAGG-T-GGCT-------------CTAA--AAC-TTGGCCATGTTC------GTACCC-C-AAC-----------TGCAAGTAAAAGACAAATTCTGAC-TGAGTTTGACTGGTAGATTTCAATAC---ATATATTTTAtg
gi|5 : CAGTGTTGAC--TTCAATGAGGAATTAATATAAAATTATTGTTTTT-ATCAATGGCTAGCCTGGGAAA---CTGCAATTGC------TTAATGG-T---TTTTGTCATTTATTTTAGAACCATCGTGGATC-TTTTTT--GTTTGAATGTAGGTTACATGATTGATCAATTACTTCAATCAACTC
gi|5 : ACTCCTTACCATGAC------CTCAGCAGAAACATC-A-------CCTTTTTTG---GTGAAAAA-CA--AATCTTA------TTTGCTTT---AA-AT-T---TTT-T---G----CATCATGTTTACAGTTTATTTTTT---GACAAT--CATGTCAGTTTATAG----AAGCTTTCTTTTCGAGGCATAATATGATGatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactccttaccatgacctcagcagaaacatcaccttttttggtgaaaaacaaatcttatttgctttaaattttttgcatcatgtttacagtttattttttgacaatcatgtcagtttatagaagctttcttttcgaggcataatatgatg
gi|6 : cagtgttgacttcaatgaggaattaatataaaattattgtttttatcaatggctagcctgggaaactgcaattgcttaatggtttttgtcatttattttagaaccatcgtggatcttttttgtttgaatgtaggttacatgattgatcaattacttcaatcaactcatcaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGCCCCAGGTAATTTTTTAAGCCGATGTGTAATT-ACTCATCGAATTCAGAGTAGATGAGTATTCTTGAG--TTTTT-CAGAATAGTGATGAGTATTGCCCATAT--------ACAACCATTGCAGAGTTGATACTACAATGTTGAATTATTATTAAATTATT-CTTTTTATCAATGGCTAGCCTTGGAAA---CTGCAATTGTCATCAGTTAATGG-T---TTT-GTCATTTATTATAAAGCCATCTTGGGTA-TTTTTT--GTTTGAATGCAGGTTACATGACTGACCAATTCCTTCAATATACTC
gi|7 : aTCTTTAAGCTGATGAGTAGTT-ACTCATCAAAATCAGAGGAATTTAGTGTTCTTGAG--TTTTTGCAGAAAAGTTGTGAAAATTGCGAATATG---ATATACAATCAGTACAGAGTTGACGCTTCAATGCAAAATTATTATTAAATTATTG-TTTTAATCAATGGCTAGTCAGGCAAA---CTACAATTGCCATTGCTTAATGGATTAATTT-GTTATTTATTTCAGAATCATCGTGAGTCTTTTTTT--GTTTGAATGTAGG--------TTGGCCAATTCCTTCAATATAC
gi|8 : atttgttaCTGATGAGTAATT-AATCATCAAAATCAGAGTAGATGAATATTCTTGAG--TTTTT-CAGAATAGTGATGAGCATTGCTCATATG---ATATACAACCAG--------TGACACTTCAAa
gi|8 : aATCTATGACTTGCCAGGGGAAGTTCTGCAATTGCCAATGCTTAATGA-T---TTT-GTCATTTATTTTAGAACCATCATGGGTC----TTT--GTTTGAATGCAGGTTACAGGAGTGACCAATTCCTTCAAAATACTCatctatgacttgccaggggaagttctgcaattgccaatgcttaatgattttgtcatttattttagaaccatcatgggtctttgtttgaatgcaggttacaggagtgaccaattccttcaaaatactc
gi|9 : actgatgagtaattaatcatcaaaatcagagtagatgaatattcttgagtttttcagaatagtgatgagcattgctcatatgatatacaaccagtgacacttcaaCATT-A-------TCTTTTTTTTTTGTGAAATA-TG--AA-CTTAATTTA-------------T-AG-TGTTTTT-T---G----CGTCATATTTACAGCTTATTTGTT---GACAATCATATGTCAGTTAATAA----ACACTTTCTTTTCGAAGAAAAGT---------G-T-GATA-------------CTAA--AACATGGGTCATATTCCGACTGG---CT-T-GGCCACATTCCGATTGCAACAAAAATACACATCCCGGC-CGAGTTTGACTGGTAAATTTCAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCATATCTTATCCCCC