lowQualScore : 22222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 77777 1 1 88888888888888888888888 1 11 22222 1111 1111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 1 33333333333333 1 111 1 22222 1 111111 33333333333333 22222222 222222 11 222 1 55555555555555555555555555555555555 2222 1 1
lowQualScore : 5 55555 4 4 0 2 7 4 6 22222222222222222222222 0 5 11 77777 0000 8 5 22 4444444 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55555555 6 9999 1 1 11111111111111 5 6 7 111 2 6 5 6 11111 3 4 5 1 0 666666 4 0 88888888888888 5 1 7 88888888 1 2 99 555555 6 5 2 77 222 5 5 1 55555555555555555555555555555555555 7 8888 2 5
lowQualScore : . ..... . . . . . . . ....................... . . .. ..... .... . . .. ....... . ............................................................................................ ........ . .... . . .............. . . . ... . . . . ..... . . . . . ...... . . .............. . . . ........ . . .. ...... . . . .. ... . . . ................................... . .... . .
lowQualScore : 0 55555 0 0 5 5 0 0 0 33333333333333333333333 7 0 00 22222 6666 6 0 44 8888888 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 4 2222 7 5 77777777777777 2 2 5 777 5 0 0 0 88888 0 7 7 4 1 444444 0 9 11111111111111 7 7 5 22222222 0 5 22 555555 0 2 5 88 333 0 0 4 44444444444444444444444444444444444 3 3333 3 0
consensus : NTTATGTCTGCTG---ATGTTCTTNGCTCNCTGGAGCCAAAGGCTCAANGTGAGNTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAATGCAAGTNACTGACGAGAA----------------------ACATTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACATTCANATATTGATACGTTTACNTACNTTTATTTAAT----------------------CAA--CTG-ANCT-ATATC-TTTA-AGCTCATCTGAGCAAAGCTCA---------------------CA-CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGCTCACGACA---TG---------TATTTNTTTTAGCGACATCT---CTNAAACCACTTTTCAAGTTTGTCAAACATGGGN----CATGAATGAGCACCAGTAAGAATAAG-A-TGAAAGTATG------GACTTGT--------TC----GCTT-ACTCAAAT-------NATCCAAAACTTGTT--CATA---TA-ATAAATATTCAACTCTCTATATCATGNAAATTGGATGTTTAGAATTTAATGACTAAAAGCCAAACCATGAAGATAAANT--TCGTTTAAT-ACTGA-AA-AAT-TATATATA----TGTCTAATAA-CACAAATCGTCTAAGAAAAGTA
Reference ( gi|1 ) : GTTATTTCTATTGATAATGTTCTTAGCTCACTGGAGCCAAAGGCTCAATGTGAGGTTTGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACAAGAATCCTTTCTAAAGTGATATGACCGCACTGGGCTCGAACACACAACTGAGGCAATGA--TATATA-TAACATTCAAATATTGATACATTTACATACGTTTATTTAAT----------------------CAA--CTG-ATCT-ATATC-TTTA-AGCTCATCTGAGCAAAGCTCA---------------------CATCTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCGTCATTGCTCACTACA---TG---------TATTTGTTTAAGTGACATCT---CTGAGACCAATTTTCAAGTTTGTCAAACATGGGT----CATAAATGAGCACCATTAAGAATAAG-A-TGAAAATATG------AACTTAT--------TT----GCTT-ACTCAGAT-------AATCCAAAACTTGTT--CATA---TT-ATAAATATTCAACTCTTTATATCATTTAAATTGGATGGTTAGAATTTAATGACTAAAAGCCAAACCATGAAGATAAAAT--TTATTTAAT-ACTGATAATAATATATATATA----TGTTTAATAAGCACAAATCGTCTAAGAAAAGTA
gi|2 : TTATGTCTGTTG----TGTTCTTAACTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTA
gi|19 : ATGTCTACT----ATGTTCTTTGCTCTCTGGAGCCAAAGACTCAAGGTAAGCTTTGTTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgcactgggcccgaacacacatctaaggagatgatacagacattcaaatgttgatacatttacataccatcatttaattttagctcgcttgagcaatgctcaactaaactgtatctttaagctcatctgagcaaagctcacagctgagcaaagctcatttgtgttatttttatagcaaactcttcgtcgtcattgctcacaacatgtatttgttatagtgacatctctgaaaccacttttcatgtttgtcaaatttaggtgaataccattaagaataagatgaaaatataaacttactcaaattatctaaaagttgttcatataataaatattcaagtctctgtaacatgaaaattggatgtttagaattcaatgactaaaagccaaaccatgaagataaagttagtttaatactaataaaaatatatatgtttaataaccacaaatcgtctaagaaaagt
gi|3 : GTAATGCAAGTTACTGACGAGAA----------------------ACATTGGA-TCAAACACACAATTGAGGCAGCAA--TAAATAACAAAATTTATTTATTGATATGGTTACTTACCTGTATTTTAT--------------------------------TTT-ATA-----------------GATCAGA------------------------------TGAGA---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTTGTCATTGTTCGTGACATATTG---------TGTTTTTTTAG-------CT---CTTAAACCACTTTTTAAGTTTGTCAAACAAAGGT----CA
gi|6 : TAATGCAAGTAACTGATGAGAA----------------------ACATTGGA-TCAAACACAAAATGGAGGCAGCGA--TA-A-A-TAACAT----ATCTT-----ATTTATTGATGTTTACTTA------------------------C----CTGTATTT--TAT--TTTATAGATCAGATGAGAAAAGCTCA---------------------G--CTGACCTATATCTTAAGTTTATCTGTTAAGCTATTCTTGTAGCAAGCTCTTCGTTGTCATCATTCAAT-CA---TGACCTGGTTTTGTTTTTTT-AGCGAC-TCTTCCCTTAAACCAgtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttctacatgaatgagcaccagtaagaataagaatgaaagtatggatttgtaccacagcttgcttaatcaaattcatctaaatcaaacttattttcataaggaacaattaaccctacatcatctgatgctaagaattagatgactaaaagctaaaccatgttcgcttgttcttttataactgaaattctatacatgtaatactgtataaacaaatcaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|2 : GATATGACCGCACTGGGCCCGAACACACATCTAAGGAGATGA--TACA----GACATTCAAATGTTGATACATTTACATACCATCATTTAATTTTAGCTCGCTTGAGCAATGCTCAA--CTA-AACT-GTATC-TTTA-AGCTCATCTGAGCAAAGCTCA---------------------CAGCTGAGC---A----AAGCTCATTTGT---GTTATTTTTATAGCAAACTCTTCGTCGTCATTGCTCACAACA---TG---------TATTTGTTATAGTGACATCT---CTGAAACCACTTTTCATGTTTGTCAAATTTAGG-----------TGAATACCATTAAGAATAAG-A-TGAAAATATA------AA--------------------CTT-ACTCAAAT-------TATCTAAAAGTTGTT--CATA---TA-ATAAATATTCAAGTCTCTGTAACATGAAAATTGGATGTTTAGAATTCAATGACTAAAAGCCAAACCATGAAGATAAAGT--TAGTTTAAT-ACTAATAA-AA---ATATATA----TGTTTAATAACCACAAATCGTCTAAGAAAAGTcaaaggtgagtttcatcttcaaatcagtgtaggaatatactgtactggtacatttcaatgtttattagcagtacaccttactgatacagaaa
gi|9 : ttatgtctgttgtgttcttaactcactggagccaaaggctcaacgtgaggtttgtttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTGAAGACACAACTGAGGCAATGA--TATGT--TTACTTGCCTGT-TTTATATTTTT---TA-ATTCATTTGAG----------------------CAAAGCTC-AGCTGACATC-TTTA-AGCTCACCTGAGCAAAGCTC----------------------------------------AGTTAA--------GCTATTCTTGTAGCAAGCTCTTCGTCTTCGTCATTCAC-ACA--------------CATTCCTTTTAGTGACTTCG---CTTAAACCA
gi|5 : catGCTCGTACACACAACTGAAGCAATGAATTCTATA-TAACAGTCAAATATTGATTCATTTGTAAACTTTTATTTAAT------------------------------------------TTTT-AGCTCACCTGAGCAAAGCTCAACTGAACTATATCTTTAAGCTCATCTGAGC---A----AACCTCATTTGT---GTTTTTCTTGTAGCAAGCTCCTCG-CGTCTTTACTCATGATA---TG---------TATTTGTTTTAGCGACATCT---TGGAAACCACTTTTCAAGTTTGTCAAACATGGGA----CAAAAGTGAACACCATTAAAAATAAA-A-TGAAAATCTT------AACTTAT--------TT----GCTT-ACTCAAAT-------TATCCAAAAGTTGTT--CATA---TA-ATAAATATTCAACTCTCTATATCATGAAAATTGGATGTTTAGAATTTATTGACTAGAAGCCAAACCACGAA--------------------ATTGA-AA-AAT-TGTATA-A----TGTCTATTAAGCACAAATCGTCTAAGAAAAGTAcaaaggtcagttgcatcttcaattaagtgtgggaatatatactgtactattacatttccatg
gi|7 : T----------------------CAA--CTG-ATCT-ATATC-TTTA-AGCTCAT--------------------------------------CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCATCATTGCTCACTACA---TG---------TATTTATTTCAGTGGCATCT---CAGAAACCACTTTTCAAGTTTGTCAAACATGGGA----TATAAGTCAGCACCATTAAGAATAAG-A-TGAAAATATG------AACTTAT--------TT----GCTT-ACTCAAAT-------TATCCAAAACTTGTT--CATA---TA-ATAAATATTCAACTCTCTATATCATGTTAATTGGATGTTTAGAATTTAATGAATAAAAGTCAAAGCATGAAGATAAAAT--TCGTTTAAT-ACg
gi|17 : cT----------------------CAT--TTG-AACT-ATGTT-TTTA-AGCTCATTT-------------------------------------TGAGC---A----TAGCTCAGTTGA---GCTATTCTTGTAGCAAGCTTT
gi|18 : ttATCATTTT-AGGTCATCTGAGTGAAGCTCA---------------------
gi|18 : ---------------------CATCTGAGT---G----AAGCTCAAATGT---GCTATTTCTGTAGAAGGTTCACTGTCaatgtgctatttctgtagaaggttcactgtca
gi|12 : atcattttaggtGTTTGTTGAAC-TG--TTCTACATGAATGAGCACAAGTAAGAATAAGAA-TGAAAGTACG------GATTTGT--------TCCACAGCTT-GTTTGCTT-------AAT-CAAA-----TT--CATC---TTAATAAAAATT-AACCC--TACATCATCTGAa
gi|3 : agt----CATGAATGAGCACCAGTAAGAATAAG-AATGAAAGTATG------GATTTGTACCACAGCTT----GCTT-AATCAAATTCATCTAAATC--AAACTTATTTTCATA------AGGAACAATTAACCCT--ACATCATCT------GATGCTAAGAATTAGATGACTAAAAGCTAAACCATG----TTCGCTTGTTCTTTTATAACTGA-AATTCTATACATGTAATACTGT---ATAA--ACAAATCtgctaagtaa
gi|4 : gtaatgcaagttactgacgagaaacattggatcaaacacacaattgaggcagcaataaataacaaaatttatttattgatatggttacttacctgtattttattttatagatcagatgagaaaagctcagttaagctattcttgtagcaagctcttcgttgtcattgttcgtgacatattgtgtttttttagctcttaaaccactttttaagtttgtcaaacaaaggtcagtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttcta----CATGAAGGAGCACCAGTAAGAATGAG-ATTGAGAGCTTGTACTAAAGCTTAT--------TT----GCTTAAATCAAAT-------GA-CCATAACTTGTA--TATAAACTT-ATAAA-AT--AA-----TATATAATAAAAATC------TAAGTATTTGATGACTAAATTCCAAATCATGTAGAaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|15 : aaaacataattttacttgaacctttta----CATGAATGAGCACCAGTAAGAACAAT-A-TCAATA-ATG------GATTTGT--------TCCACAGCTT-ATTcctgttattttgtaaccatctgaaattcattaacatgtattttttttaaattaataaaagcaaactcttattaaatacatgcacacgtcacctaagaaaaagtagtaattgtaaattcattcaataaaaaaattgaaagaaaaaaaagacaagagcagtgtttgaacgtataaccaattttgaacctatctctactacataacattttatataaaactattgcgttttacattacttttcatgttttctatcatactggctaaaaagtactttttgtaacagttgatcactagagttatgtccctttttggaaatggaaataaaatatataagggttgcaaacacaaacaatttctaatata
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GTCGTCTAAGAAAAGTATAATTATAAATCCTTTCAATAATAAAAAAATCCAAAGGACAGACAGCAATTAAGAAAATAATTTTGAGCAAAACTTCCTATTATAACATTGACATCTCCAAATGATTATTTAATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGATGAAATATTTTGTGATAGTTCAACTAGAATTATTCCCTTATCTTAATGGAAACAAAATTTGGGCCAAACATAATTCAATTTTTGGATAT
Unaligned ( gi|10 ): AATTATAAATCCGTAAAAAAAAAAAAAAAGGGCAGACAGCAATTTAGAAATTAATTTTGAGCGAAACTTCCTATTATAACATTGACATCTCCAAATGATTATGTGATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGACAAAGTATTTTTTGACAGTTCAACTTGAGTTATTCCCCTTATCATAATGGAAACAA
Unaligned ( gi|11 ): CAAATTATAACTTATTTACATAATGACAAATTAACCCTCAATAATTTGATGCTAAGAATAAGATGACTAAAAGCCAAACCATGTACACCTGTTCTTTTATAAGCAACTAAAATTCATATACATGTAACACTGTATAAAACAAAACAAGCAAACACTTGCTAATAAGTGCAAATCATCTAAGAAAAATTACGAATTGTAAAT
Unaligned ( gi|13 ): ATAATTTAAATGAATTAATAACAGAAAACTGAACCATGTAAACATGTTCTTATATAAGCAATTGAATTTCATTTATTTACATGTAATAAGGTATAAAACAAAATAATAAATACACTTATATAATGA
Unaligned ( gi|14 ): TTTTACAAGCAACTGATATTTATTTACATATAATACTGTATAAAACATCAAAACAAACAACCTTTTTAATAAGCACATGTTACCTAAGAAAA
Unaligned ( gi|16 ): GTAATACTGTATAAACAAATTGAAGCAAACACTAAATAAGAGCCAATCATATTTTTTTTCTTTCATACACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111 1 111 111 1 99999999999999999999999999 1 7777777777777777777 11111111 1111 111111111 1 111 111 1 111111 33333333333333 1111 11111 11 111 4444444444444444444444444444444444 222 1111 33333333 22
lowQualScore : 11 888888 1 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 8888888888888888888888 0 0 99 6 333 111 77 1 1 3 1 99999999999999999999999999 33 5555 7 0 3 0000000000000000000 55555555 1 777 1 2222 6 333333333 2 6 5 000 1 3 333 2 0 5 1 5 1 444444 4 66666666666666 5 0 5 1 2 0000 5 22222 5 5 7 33 0 111 22 0 2 0 9999999999999999999999999999999999 444 8 2222 6 44444444 99
lowQualScore : .. ...... . . . . ................................................................................................................................. . ...................... . . .. . ... ... .. . . . . .......................... .. .... . . . ................... ........ . ... . .... . ......... . . . ... . . ... . . . . . . ...... . .............. . . . . . .... . ..... . . . .. . ... .. . . . .................................. ... . .... . ........ ..
lowQualScore : 33 333333 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3333333333333333333333 8 7 22 0 333 777 00 7 7 3 0 00000000000000000000000000 88 8888 6 0 1 8888888888888888888 33333333 9 888 4 1111 6 777777777 1 3 1 000 0 5 666 5 0 0 1 0 1 444444 2 55555555555555 0 2 0 0 5 6666 0 55555 0 5 6 88 4 111 11 9 1 6 0000000000000000000000000000000000 888 0 6666 8 44444444 00
consensus : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TG----TATTTGTTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAA-TNATCCA----AAACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATGAAGATAAA---GTTCG-------TTTAAT-----ACTGATAA-AAT-T-ATATACATGTAA-ACTATATAAGCACAAATCGTCTAAGAAAAGTA
Reference ( family-360 ) : NTTATGTCTGCTGAT---GTTCTTNGCTCNCTGGAGCCAAAGGCTCAANGTGAGNTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAATGCAAGTNACTGACGAGAA----------------------ACATTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCANATATTGATACGTTTACNTACNTTTATTTAAT-----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCACA-CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TG----TATTTNTTTTAGCGACATCT---CTNAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCAGTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAA-TNATCCA----AAACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGNAAATTGGATGTTTAGAATTTAATGACTAAAAGCCAAACCATGAAGATAAA---NTTCG-------TTTAAT-----ACTGA-AA-AAT-T-ATATATATGT----CTA-ATAA-CACAAATCGTCTAAGAAAAGTA
gi|1 : TTATTTCTATTGATAATGTTCTTAGCTCACTGGAGCCAAAGGCTCAATGTGAGGTTTGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACAAGAATCCTTTCTAAAGTGATATGACCGCACTGGGCTCGAACACACAACTGAGGCAATGA--TATATA-TAACAT---TCAAATATTGATACATTTACATACGTTTATTTAAT-----------------------CAACTGATCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCACATCTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCGTCATTGC----TCACTACA---TG----TATTTGTTTAAGTGACATCT---CTGAGACCAATTTTCAAGTTTGTCAAACATGGGT--CATAAATGAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAGA-TAATCCA----AAACTTGTTCATA-TT-----ATAA-ATATTCAACTCTTTATATCATTTAAATTGGATGGTTAGAATTTAATGACTAAAAGCCAAACCATGAAGATAAA---ATTTA-------TTTAAT-----ACTGATAATAATAT-ATATATATGT----TTA-ATAAGCACAAATCGTCTAAGAAAAGTA
gi|11 : gCAAA-TTAT--------AACTTATTTACA-TA-----ATGACAAATT-AACCCTCAATA--------ATTTGATGCTAAGAATAAGATGACTAAAAGCCAAACCATG----TACACCTGTTCT-------TTT-ATAAGCAACT---AA-AAT-TCATATACATGTAACACTGTATAA-AACAAA
gi|12 : GTTTGTTGAAC-TGTTCTACATGAATGAGCACAAGTAAGAATAAGAA-TGAAAGT-ACGGA------TTTGT--------TCCACAGCTT-GTTTGCT-TAAT-CA----AA-----TTCATCTTA-----ATAA-AAATT-AA--CCCTACATCATacaagcaaacacttgctaataagtgcaaatcatctaagaaaaattacgaattgtaaat
gi|15 : agt--CATGAATGAGCACCAGTAAGAACAAT-A-TCAA--TAATGGA------TTTGT--------TCCACAGCTT-ATTctgatgctaagtaa
gi|17 : acaaagtgtttgatgtcttgttttaT-----------------------CATTTGAACTATGTTTTTA-AGCTCATTT---------------------TGAGC---A----TAGCTCAGTTGA---GCTATTCTTGTAGCAAGCTTTtg
gi|18 : ttAGGTCAT--CTGAGT---G----AAGCTCAAATGT---GCTATTTCTGTAGAAGGTTC
gi|19 : atcattttATGTCTACT-AT---GTTCTTTGCTCTCTGGAGCCAAAGACTCAAGGTAAGCTTTGTTTTTAactgtca
gi|2 : TTATGTCTGTTG-T---GTTCTTAACTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTA
gi|2 : CACTGGGCCCGAACACACATCTAAGGAGATGA--TACA----GACAT---TCAAATGTTGATACATTTACATACCATCATTTAATTTTAGCTCGCTTGAGCAATGCT-CAACTAAACTGTATCTTTA-AGCTCATCTGAGCA-----AAGCTCACAGCTGAGC---A----AAGCTCATTTGT---GTTATTTTTATAGCAAACTCTTCGTCGTCATTGC----TCACAACA---TG----TATTTGTTATAGTGACATCT---CTGAAACCACTTTTCATGTTTGTCAAATTTAGG-----TGAAT----ACCATTAAGAATAAG-A-TGAAAAT-ATAAA------CTT---------------------ACTCAAA-TTATCTA----AAAGTTGTTCATA-TA-----ATAA-ATATTCAAGTCTCTGTAACATGAAAATTGGATGTTTAGAATTCAATGACTAAAAGCCAAACCATGAAGATAAA---GTTAG-------TTTAAT-----ACTAATAA-AA----ATATATATGT----TTA-ATAACCACAAATCGTCTAAGAAAAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgcactgggcccgaacacacatctaaggagatgatacagacattcaaatgttgatacatttacataccatcatttaattttagctcgcttgagcaatgctcaactaaactgtatctttaagctcatctgagcaaagctcacagctgagcaaagctcatttgtgttatttttatagcaaactcttcgtcgtcattgctcacaacatgtatttgttatagtgacatctctgaaaccacttttcatgtttgtcaaatttaggtgaataccattaagaataagatgaaaatataaacttactcaaattatctaaaagttgttcatataataaatattcaagtctctgtaacatgaaaattggatgtttagaattcaatgactaaaagccaaaccatgaagataaagttagtttaatactaataaaaatatatatgtttaataaccacaaatcgtctaagaaaagt
gi|3 : ttatgtctgttgtgttcttaactcactggagccaaaggctcaacgtgaggtttgtttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgGTAATGCAAGTTACTGACGAGAA----------------------ACATTGGA-TCAAACACACAATTGAGGCAGCAA--TAAATAACAAAAT---TTATTTATTGATATGGTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCA---GA-------------------TGAGA---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTTGTCATTGT----TCGTGACATATTG----TGTTT-TTTTAG------CT---CTTAAACCACTTTTTAAGTTTGTCAAACAAAGGT--CA
gi|3 : --CATGAATGAGCACCAGTAAGAATAAGAA-TGAAAGT-ATGGA------TTTGTACCACAGCTT----GCTT-AATCAAATTCATCTAAATCAAACTTATTTTCA-TA-----AGGA-ACAATTAA--CCCTACATCATCT------GATGCTAAGAATTAGATGACTAAAAGCTAAACCATG------------TTCGCTTGTTCTTTTATA----ACTG---A-AAT-T-CTATACATGTAATACTGTATAA--ACAAATCgtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttctacatgaatgagcaccagtaagaataagaatgaaagtatggatttgtaccacagcttgcttaatcaaattcatctaaatcaaacttattttcataaggaacaattaaccctacatcatctgatgctaagaattagatgactaaaagctaaaccatgttcgcttgttcttttataactgaaattctatacatgtaatactgtataaacaaatcaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|4 : gtaatgcaagttactgacgagaaacattggatcaaacacacaattgaggcagcaataaataacaaaatttatttattgatatggttacttacctgtattttattttatagatcagatgagaaaagctcagttaagctattcttgtagcaagctcttcgttgtcattgttcgtgacatattgtgtttttttagctcttaaaccactttttaagtttgtcaaacaaaggtcagtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttcta--CATGAAGGAGCACCAGTAAGAATGAG-ATTGAGAGC-TTGTACTAAAGCTTAT--------TT----GCTTAAATCAAA-TGA-CCA----TAACTTGT--ATA-TAAACTTATAA-A-AT--AA-----TATATAATAAAAAT------CTAAGTATTTGATGACTAAATTCCAAATCATGTAGAaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|5 : aaaacataattttacttgaaccttttaGCTCGTACACACAACTGAAGCAATGAATTCTATA-TAACAG---TCAAATATTGATTCATTTGTAAACTTTTATTTAATTTTTAGCTCACCTGAGCAAAGCTCAACTGAACTATATCTTTA-AGCTCATCTGAGCA-----AA-------------C-----------CTCATTTGT---GTTTTTCTTGTAGCAAGCTCCTCG-CGTCTTTAC----TCATGATA---TG----TATTTGTTTTAGCGACATCT---TGGAAACCACTTTTCAAGTTTGTCAAACATGGGA--CAAAAGTGAACACCATTAAAAATAAA-A-TGAAAAT-CTTAA------CTTAT--------TT----GCTT-ACTCAAA-TTATCCA----AAAGTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGAAAATTGGATGTTTAGAATTTATTGACTAGAAGCCAAACCACGAA--------------------------------ATTGA-AA-AAT-T-GTATA-ATGT----CTA-TTAAGCACAAATCGTCTAAGAAAAGTAcctgttattttgtaaccatctgaaattcattaacatgtattttttttaaattaataaaagcaaactcttattaaatacatgcacacgtcacctaagaaaaagtagtaattgtaaattcattcaataaaaaaattgaaagaaaaaaaagacaagagcagtgtttgaacgtataaccaattttgaacctatctctactacataacattttatataaaactattgcgttttacattacttttcatgttttctatcatactggctaaaaagtactttttgtaacagttgatcactagagttatgtccctttttggaaatggaaataaaatatataagggttgcaaacacaaacaatttctaatata
gi|6 : TAATGCAAGTAACTGATGAGAA----------------------ACATTGGA-TCAAACACAAAATGGAGGCAGCGA--TA-A-A-TAACATATCTTATTTATTGAT--GTTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCAGATGAGAA-----AAGCTCA-G-CTGACCTATATCTTAAGTTTATCTGTTAAGCTATTCTTGTAGCAAGCTCTTCGTTGTCATCATTCAATCATGACC---TGGTTTTGTTT-TTTTAGCGAC-TCTTCCCTTAAACCACg
gi|7 : T-----------------------CAACTGATCTATATCTTTA-AGCTCATCTGA----------------------GC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCATCATTGC----TCACTACA---TG----TATTTATTTCAGTGGCATCT---CAGAAACCACTTTTCAAGTTTGTCAAACATGGGA--TATAAGTCAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAAA-TTATCCA----AAACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGTTAATTGGATGTTTAGAATTTAATGAATAAAAGTCAAAGCATGAAGATAAA---ATTCG-------TTTAAT-----ACaaaggtgagtttcatcttcaaatcagtgtaggaatatactgtactggtacatttcaatgtttattagcagtacaccttactgatacagaaa
gi|9 : cGGATTGAAGACACAACTGAGGCAATGA--TATGTT-TA--------C-----TTGCC-TGTTT---TATATTT-TTTAATT----------------------CATTTGAGC---A-----A-AGCTCAGCTGA-CATCTTTAAGCTCAC--CTGAGC---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTCTTCGTCAT----TCAC-ACA---------CATTCCTTTTAGTGACTTCG---CTTAAACCAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTCGTCTAAGAAAAGTATAATTATAAATCCTTTCAATAATAAAAAAATCCAAAGGACAGACAGCAATTAAGAAAATAATTTTGAGCAAAACTTCCTATTATAACATTGACATCTCCAAATGATTATTTAATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGATGAAATATTTTGTGATAGTTCAACTAGAATTATTCCCTTATCTTAATGGAAACAAAATTTGGGCCAAACATAATTCAATTTTTGGATAT
Unaligned ( gi|10 ): AATTATAAATCCGTAAAAAAAAAAAAAAAGGGCAGACAGCAATTTAGAAATTAATTTTGAGCGAAACTTCCTATTATAACATTGACATCTCCAAATGATTATGTGATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGACAAAGTATTTTTTGACAGTTCAACTTGAGTTATTCCCCTTATCATAATGGAAACAA
Unaligned ( gi|13 ): ATAATTTAAATGAATTAATAACAGAAAACTGAACCATGTAAACATGTTCTTATATAAGCAATTGAATTTCATTTATTTACATGTAATAAGGTATAAAACAAAATAATAAATACACTTATATAATGA
Unaligned ( gi|14 ): TTTTACAAGCAACTGATATTTATTTACATATAATACTGTATAAAACATCAAAACAAACAACCTTTTTAATAAGCACATGTTACCTAAGAAAA
Unaligned ( gi|16 ): GTAATACTGTATAAACAAATTGAAGCAAACACTAAATAAGAGCCAATCATATTTTTTTTCTTTCATACACT
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 1111111111111111111111 1 111 111 1 99999999999999999999999999 1 44444444444444444444444444444444 1111 111 1111 111 111 1 111111 33333333333333 1111 11111 111 777777777777777777777777777777777777777777777777777777777777 4444444444444444 1
lowQualScore : 888888 3 77777777777777777777777777777777777777777777777777777777777777777777777777777 8888888888888888888888 0 0 99 6 333 111 77 1 1 1 44444444444444444444444444 33 5555 7 0 3 33333333333333333333333333333333 1 777 1 2222 6 000 3333 6 5 000 0 3 333 1 5 0 1 5 1 444444 4 66666666666666 5 0 66 2 0000 5 22222 5 5 7 66 1 0 666 55 1 0 111111111111111111111111111111111111111111111111111111111111 6 888 7 8888888888888888 77 0
lowQualScore : ...... . ............................................................................. ...................... . . .. . ... ... .. . . . .......................... .. .... . . . ................................ . ... . .... . ... .... . . ... . . ... . . . . . . ...... . .............. . . .. . .... . ..... . . . .. . . ... .. . . ............................................................ . ... . ................ .. .
lowQualScore : 333333 7 00000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 8 7 22 0 333 777 33 7 7 0 22222222222222222222222222 88 8888 6 0 1 77777777777777777777777777777777 9 888 4 1111 6 000 0000 3 1 000 7 5 666 0 0 0 1 0 1 444444 2 55555555555555 0 2 00 5 6666 0 55555 0 5 6 44 4 4 888 66 0 6 666666666666666666666666666666666666666666666666666666666666 7 333 8 7777777777777777 77 0
consensus : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AAT-T-ATATACATGTAA-ACT--------ATATAAGCACAAATCGTCTAAG-AAAAGTA
Reference ( family-360 ) : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATN-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AAT-T-ATATACATGTAA-ACT--------ATATAAGCACAAATCGTCTAAG-AAAAGTA
gi|1 : TTATTTCTATTGATAATGTTCTTAGCTCACTGGAGCCAAAGGCTCAATGTGAGGTTTGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACAAGAATCCTTTCTAAAGTGATATGACCGCACTGGGCTCGAACACACAACTGAGGCAATGA--TATATA-TAACAT---TCAAATATTGATACATTTACATACGTTTATTTAAT-----------------------CAACTGATCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCACATCTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCGTCATTGC----TCACTACA---TGTATTTG---TTTAAGTGACATCT---CTGAGACCAATTTTCAAGTTTGTCAAACATGGGT--CATAAATGAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAGATA-ATCCAAA----ACTTGTTCATA-TT-----ATAA-ATATTCAACTCTTTATATCATTTAAATTGGATGGTTAGAATTTAATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---ATTTATTTAATA--CTGATA--------ATAATAT-ATATATATGT----TT--------A-ATAAGCACAAATCGTCTAAG-AAAAGTA
gi|11 : gCAAATT-AT----A----ACTTATTTACA-TA-----ATGACAAATT-AACCCTCAATA--------ATTTGATGCTAAGAATAAGATGACTAAAAGCCAAACCATG-------------------------TACACCTGTTCTTTT-ATAAGCAACTA--------A-AAT-TCATATACATGTAACACT--------GTATAAA-ACAAA
gi|12 : GTTTGTTGAAC-TGTTCTACATGAATGAGCACAAGTAAGAATAAGAA-TGAAAGT-ACGGA------TTTGT--------TCCACAGCTT-GTTTGCTTA-AT-CAAA---------TTCATCTTA-----ATAA-AAATT-AA--CCCTACATCATCT------GATGCTAAGacaagcaaacacttgctaataagtgcaaatcatctaagaaaaattacgaattgtaaat
gi|15 : agt--CATGAATGAGCACCAGTAAGAACAAT-A-TCAA--TAATGGA------TTTGT--------TCCACAGCTT-ATTtaa
gi|17 : acaaagtgtttgatgtcttgttttaTT----------------------CATTTGAACTATGTTTTTA-AGCTCATTT---------------------TGAGC---A----TAGCTCAGTTGA---GCTATTCTTGTAGCAAGCTTTtg
gi|18 : tAGGTCAT--CTGAGT---G----AAGCTCAAATGT---GCTATTTCTGTAGAAGGTTC
gi|19 : atcattttATGTCTACT-AT---GTTCTTTGCTCTCTGGAGCCAAAGACTCAAGGTAAGCTTTGTTTTTAactgtca
gi|2 : TTATGTCTGTTG-T---GTTCTTAACTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTA
gi|2 : CACTGGGCCCGAACACACATCTAAGGAGATGA--TACA----GACAT---TCAAATGTTGATACATTTACATACCATCATTTAATTTTAGCTCGCTTGAGCAATGCT-CAACTAAACTGTATCTTTA-AGCTCATCTGAGCA-----AAGCTCACAGCTGAGC---A----AAGCTCATTTGT---GTTATTTTTATAGCAAACTCTTCGTCGTCATTGC----TCACAACA---TGTATTTG---TTATAGTGACATCT---CTGAAACCACTTTTCATGTTTGTCAAATTTAGG-----TGAAT----ACCATTAAGAATAAG-A-TGAAAAT-ATAAA------CTT---------------------ACTCAAATT-ATCTAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAAGTCTCTGTAACATGAAAATTGGATGTTTAGAATTCAATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTAGTTTAATA--CTAATA--------A-AA----ATATATATGT----TT--------A-ATAACCACAAATCGTCTAAG-AAAAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgcactgggcccgaacacacatctaaggagatgatacagacattcaaatgttgatacatttacataccatcatttaattttagctcgcttgagcaatgctcaactaaactgtatctttaagctcatctgagcaaagctcacagctgagcaaagctcatttgtgttatttttatagcaaactcttcgtcgtcattgctcacaacatgtatttgttatagtgacatctctgaaaccacttttcatgtttgtcaaatttaggtgaataccattaagaataagatgaaaatataaacttactcaaattatctaaaagttgttcatataataaatattcaagtctctgtaacatgaaaattggatgtttagaattcaatgactaaaagccaaaccatgaagataaagttagtttaatactaataaaaatatatatgtttaataaccacaaatcgtctaagaaaagt
gi|3 : ttatgtctgttgtgttcttaactcactggagccaaaggctcaacgtgaggtttgtttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgGTAATGCAAGTTACTGACGAGAA----------------------ACATTGGA-TCAAACACACAATTGAGGCAGCAA--TAAATAACAAAAT---TTATTTATTGATATGGTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCA---GA-------------------TGAGA---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTTGTCATTGT----TCGTGACATATTGTGTTT----TTTTAG------CT---CTTAAACCACTTTTTAAGTTTGTCAAACAAAGGT--CA
gi|3 : --CATGAATGAGCACCAGTAAGAATAAG-AATGAAAGT-ATGGA------TTTGTACCACAGCTT----GCTT-AATCAAATTCATCTAAATCAAACTTATTTTCA-TA-----AGGA-ACAATTAACCCT--ACATCATCT------GATGCTAAGAATTAGATGACTAAAAGCTAAACCATGTTCGC--------------------T--T---GTTCTTTTATAA--CTG-----------A-AAT-T-CTATACATGTAATACT--------GTATAA--ACAAATCgtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttctacatgaatgagcaccagtaagaataagaatgaaagtatggatttgtaccacagcttgcttaatcaaattcatctaaatcaaacttattttcataaggaacaattaaccctacatcatctgatgctaagaattagatgactaaaagctaaaccatgttcgcttgttcttttataactgaaattctatacatgtaatactgtataaacaaatcaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|4 : gtaatgcaagttactgacgagaaacattggatcaaacacacaattgaggcagcaataaataacaaaatttatttattgatatggttacttacctgtattttattttatagatcagatgagaaaagctcagttaagctattcttgtagcaagctcttcgttgtcattgttcgtgacatattgtgtttttttagctcttaaaccactttttaagtttgtcaaacaaaggtcagtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttcta--CATGAAGGAGCACCAGTAAGAATGAG-ATTGAGAGC-TTGTACTAAAGCTTAT--------TT----GCTTAAATCAAATG-A-CCATA----ACTTGT--ATA-TAAACTTATAA-A-AT--AA-----TATATAATAAAAAT------CTAAGTATTTGATGACTAAATTCCAAATCATG-TAGACCTGTTATTTTGTAACCATCTGAA---ATTCA-TTAACA---TG-TATTTTTTTTA-AAT-T-A-ATAAAAGCAA-ACTCTTATTAAATACATGCACACGTCACCTAAGAAAAAGTAaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|5 : aaaacataattttacttgaaccttttaGCTCGTACACACAACTGAAGCAATGAATTCTATA-TAACAG---TCAAATATTGATTCATTTGTAAACTTTTATTTAATTTTTAGCTCACCTGAGCAAAGCTCAACTGAACTATATCTTTA-AGCTCATCTGAGCA-----AA-------------C-----------CTCATTTGT---GTTTTTCTTGTAGCAAGCTCCTCG-CGTCTTTAC----TCATGATA---TGTATTTG---TTTTAGCGACATCT---TGGAAACCACTTTTCAAGTTTGTCAAACATGGGA--CAAAAGTGAACACCATTAAAAATAAA-A-TGAAAAT-CTTAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGAAAATTGGATGTTTAGAATTTATTGACTAGAAGCCAAACCACG-AA----------------------------------------A--TTGA-A--------A-AAT-T-GTATA-ATGT----CT--------AT-TAAGCACAAATCGTCTAAG-AAAAGTAgtaattgtaaattcattcaataaaaaaattgaaagaaaaaaaagacaagagcagtgtttgaacgtataaccaattttgaacctatctctactacataacattttatataaaactattgcgttttacattacttttcatgttttctatcatactggctaaaaagtactttttgtaacagttgatcactagagttatgtccctttttggaaatggaaataaaatatataagggttgcaaacacaaacaatttctaatata
gi|6 : TAATGCAAGTAACTGATGAGAA----------------------ACATTGGA-TCAAACACAAAATGGAGGCAGCGA--TA-A-A-TAACATATCTTATTTATTGAT--GTTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCAGATGAGAA-----AAGCTCAG--CTGACCTATATCTTAAGTTTATCTGTTAAGCTATTCTTGTAGCAAGCTCTTCGTTGTCATCATTCAATCATGACC---TGGTTTTGTTTTTTTAGCGAC-TCTTCCCTTAAACCACg
gi|7 : T----------------------CAACTGATCTATATCTTTA-AGCTCATCTGAGCA-----AA------------------------GCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCATCATTGC----TCACTACA---TGTATTTA---TTTCAGTGGCATCT---CAGAAACCACTTTTCAAGTTTGTCAAACATGGGA--TATAAGTCAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGTTAATTGGATGTTTAGAATTTAATGAATAAAAGTCAAAGCATG-AAGA--------------------TAAA---ATTCGTTTAATA--Caaaggtgagtttcatcttcaaatcagtgtaggaatatactgtactggtacatttcaatgtttattagcagtacaccttactgatacagaaa
gi|9 : cGGATTGAAGACACAACTGAGGCAATGA--TATGTT-TA--------C-----TTGCC-TGTTT-TATA--TTT-TTTAATT----------------------CATTTGAGC---A-----A-AGCTCAGCTGA-CATCTTTAAGCTCAC--CTGAGC---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTCTTCGTCAT----TCAC-ACA-----CATTCC---TTTTAGTGACTTCG---CTTAAACCAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTCGTCTAAGAAAAGTATAATTATAAATCCTTTCAATAATAAAAAAATCCAAAGGACAGACAGCAATTAAGAAAATAATTTTGAGCAAAACTTCCTATTATAACATTGACATCTCCAAATGATTATTTAATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGATGAAATATTTTGTGATAGTTCAACTAGAATTATTCCCTTATCTTAATGGAAACAAAATTTGGGCCAAACATAATTCAATTTTTGGATAT
Unaligned ( gi|10 ): AATTATAAATCCGTAAAAAAAAAAAAAAAGGGCAGACAGCAATTTAGAAATTAATTTTGAGCGAAACTTCCTATTATAACATTGACATCTCCAAATGATTATGTGATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGACAAAGTATTTTTTGACAGTTCAACTTGAGTTATTCCCCTTATCATAATGGAAACAA
Unaligned ( gi|13 ): ATAATTTAAATGAATTAATAACAGAAAACTGAACCATGTAAACATGTTCTTATATAAGCAATTGAATTTCATTTATTTACATGTAATAAGGTATAAAACAAAATAATAAATACACTTATATAATGA
Unaligned ( gi|14 ): TTTTACAAGCAACTGATATTTATTTACATATAATACTGTATAAAACATCAAAACAAACAACCTTTTTAATAAGCACATGTTACCTAAGAAAA
Unaligned ( gi|16 ): GTAATACTGTATAAACAAATTGAAGCAAACACTAAATAAGAGCCAATCATATTTTTTTTCTTTCATACACT
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 1111111111111111111111 1 111 111 1 99999999999999999999999999 1 44444444444444444444444444444444 1111 111 1111 111 111 1 111111 33333333333333 1111 11111 111 777777777777777777777777777777777777777777777777777777777777 4444444444444444 1
lowQualScore : 888888 3 77777777777777777777777777777777777777777777777777777777777777777777777777777 8888888888888888888888 0 0 99 6 333 111 77 1 1 1 44444444444444444444444444 33 5555 7 0 3 33333333333333333333333333333333 1 777 1 2222 6 000 3333 6 5 000 0 3 333 1 5 0 1 5 1 444444 4 66666666666666 5 0 5 0 0000 5 22222 5 5 7 66 1 0 555 55 1 0 111111111111111111111111111111111111111111111111111111111111 6 888 7 8888888888888888 77 0
lowQualScore : ...... . ............................................................................. ...................... . . .. . ... ... .. . . . .......................... .. .... . . . ................................ . ... . .... . ... .... . . ... . . ... . . . . . . ...... . .............. . . . . .... . ..... . . . .. . . ... .. . . ............................................................ . ... . ................ .. .
lowQualScore : 333333 7 00000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 8 7 22 0 333 777 33 7 7 0 22222222222222222222222222 88 8888 6 0 1 77777777777777777777777777777777 9 888 4 1111 6 000 0000 3 1 000 7 5 666 0 0 0 1 0 1 444444 2 55555555555555 0 2 0 4 6666 0 55555 0 5 6 44 4 4 000 66 0 6 666666666666666666666666666666666666666666666666666666666666 7 333 8 7777777777777777 77 0
consensus : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AAT-T-ATATACATGTAA-ACT--------ATATAAGCACAAATCGTCTAAG-AAAAGTA
Reference ( family-360 ) : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AAT-T-ATATACATGTAA-ACT--------ATATAAGCACAAATCGTCTAAG-AAAAGTA
gi|1 : TTATTTCTATTGATAATGTTCTTAGCTCACTGGAGCCAAAGGCTCAATGTGAGGTTTGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACAAGAATCCTTTCTAAAGTGATATGACCGCACTGGGCTCGAACACACAACTGAGGCAATGA--TATATA-TAACAT---TCAAATATTGATACATTTACATACGTTTATTTAAT-----------------------CAACTGATCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCACATCTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCGTCATTGC----TCACTACA---TGTATTTG---TTTAAGTGACATCT---CTGAGACCAATTTTCAAGTTTGTCAAACATGGGT--CATAAATGAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAGATA-ATCCAAA----ACTTGTTCATA-TT-----ATAA-ATATTCAACTCTTTATATCATTTAAATTGGATGGTTAGAATTTAATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---ATTTATTTAATA--CTGATA--------ATAATAT-ATATATATGT----TT--------A-ATAAGCACAAATCGTCTAAG-AAAAGTA
gi|11 : gCAAATT-AT----A----ACTTATTTACA-TA-----ATGACAAATT-AACCCTCAATA--------ATTTGATGCTAAGAATAAGATGACTAAAAGCCAAACCATG-------------------------TACACCTGTTCTTTT-ATAAGCAACTA--------A-AAT-TCATATACATGTAACACT--------GTATAAA-ACAAA
gi|12 : GTTTGTTGAAC-TGTTCTACATGAATGAGCACAAGTAAGAATAAGAA-TGAAAGT-ACGGA------TTTGT--------TCCACAGCTT-GTTT-GCTT-AATCAAA---------TTCATCTTA-----ATAA-AAATT-AA--CCCTACATCATCT------GATGCTAAGacaagcaaacacttgctaataagtgcaaatcatctaagaaaaattacgaattgtaaat
gi|15 : agt--CATGAATGAGCACCAGTAAGAACAAT-A-TCAA--TAATGGA------TTTGT--------TCCACAGCTT-ATTtaa
gi|17 : acaaagtgtttgatgtcttgttttaTT----------------------CATTTGAACTATGTTTTTA-AGCTCATTT---------------------TGAGC---A----TAGCTCAGTTGA---GCTATTCTTGTAGCAAGCTTTtg
gi|18 : tAGGTCAT--CTGAGT---G----AAGCTCAAATGT---GCTATTTCTGTAGAAGGTTC
gi|19 : atcattttATGTCTACT-AT---GTTCTTTGCTCTCTGGAGCCAAAGACTCAAGGTAAGCTTTGTTTTTAactgtca
gi|2 : TTATGTCTGTTG-T---GTTCTTAACTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTA
gi|2 : CACTGGGCCCGAACACACATCTAAGGAGATGA--TACA----GACAT---TCAAATGTTGATACATTTACATACCATCATTTAATTTTAGCTCGCTTGAGCAATGCT-CAACTAAACTGTATCTTTA-AGCTCATCTGAGCA-----AAGCTCACAGCTGAGC---A----AAGCTCATTTGT---GTTATTTTTATAGCAAACTCTTCGTCGTCATTGC----TCACAACA---TGTATTTG---TTATAGTGACATCT---CTGAAACCACTTTTCATGTTTGTCAAATTTAGG-----TGAAT----ACCATTAAGAATAAG-A-TGAAAAT-ATAAA------CTT---------------------ACTCAAATT-ATCTAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAAGTCTCTGTAACATGAAAATTGGATGTTTAGAATTCAATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTAGTTTAATA--CTAATA--------A-AA----ATATATATGT----TT--------A-ATAACCACAAATCGTCTAAG-AAAAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgcactgggcccgaacacacatctaaggagatgatacagacattcaaatgttgatacatttacataccatcatttaattttagctcgcttgagcaatgctcaactaaactgtatctttaagctcatctgagcaaagctcacagctgagcaaagctcatttgtgttatttttatagcaaactcttcgtcgtcattgctcacaacatgtatttgttatagtgacatctctgaaaccacttttcatgtttgtcaaatttaggtgaataccattaagaataagatgaaaatataaacttactcaaattatctaaaagttgttcatataataaatattcaagtctctgtaacatgaaaattggatgtttagaattcaatgactaaaagccaaaccatgaagataaagttagtttaatactaataaaaatatatatgtttaataaccacaaatcgtctaagaaaagt
gi|3 : ttatgtctgttgtgttcttaactcactggagccaaaggctcaacgtgaggtttgtttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgGTAATGCAAGTTACTGACGAGAA----------------------ACATTGGA-TCAAACACACAATTGAGGCAGCAA--TAAATAACAAAAT---TTATTTATTGATATGGTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCA---GA-------------------TGAGA---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTTGTCATTGT----TCGTGACATATTGTGTTT----TTTTAG------CT---CTTAAACCACTTTTTAAGTTTGTCAAACAAAGGT--CA
gi|3 : --CATGAATGAGCACCAGTAAGAATAAG-AATGAAAGT-ATGGA------TTTGTACCACAGCTT----GCTT-AATCAAATTCATCTAAATCAAACTTATTTTCA-TA-----AGGA-ACAATTAACCCT--ACATCATCT------GATGCTAAGAATTAGATGACTAAAAGCTAAACCATGTTCGC--------------------T--T---GTTCTTTTATAA--CTG-----------A-AAT-T-CTATACATGTAATACT--------GTATAA--ACAAATCgtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttctacatgaatgagcaccagtaagaataagaatgaaagtatggatttgtaccacagcttgcttaatcaaattcatctaaatcaaacttattttcataaggaacaattaaccctacatcatctgatgctaagaattagatgactaaaagctaaaccatgttcgcttgttcttttataactgaaattctatacatgtaatactgtataaacaaatcaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|4 : gtaatgcaagttactgacgagaaacattggatcaaacacacaattgaggcagcaataaataacaaaatttatttattgatatggttacttacctgtattttattttatagatcagatgagaaaagctcagttaagctattcttgtagcaagctcttcgttgtcattgttcgtgacatattgtgtttttttagctcttaaaccactttttaagtttgtcaaacaaaggtcagtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttcta--CATGAAGGAGCACCAGTAAGAATGAG-ATTGAGAGC-TTGTACTAAAGCTTAT--------TT----GCTTAAATCAAATG-A-CCATA----ACTTGT--ATA-TAAACTTATAA-A-AT--AA-----TATATAATAAAAAT------CTAAGTATTTGATGACTAAATTCCAAATCATG-TAGACCTGTTATTTTGTAACCATCTGAA---ATTCA-TTAACA---TG-TATTTTTTTTA-AAT-T-A-ATAAAAGCAA-ACTCTTATTAAATACATGCACACGTCACCTAAGAAAAAGTAaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|5 : aaaacataattttacttgaaccttttaGCTCGTACACACAACTGAAGCAATGAATTCTATA-TAACAG---TCAAATATTGATTCATTTGTAAACTTTTATTTAATTTTTAGCTCACCTGAGCAAAGCTCAACTGAACTATATCTTTA-AGCTCATCTGAGCA-----AA-------------C-----------CTCATTTGT---GTTTTTCTTGTAGCAAGCTCCTCG-CGTCTTTAC----TCATGATA---TGTATTTG---TTTTAGCGACATCT---TGGAAACCACTTTTCAAGTTTGTCAAACATGGGA--CAAAAGTGAACACCATTAAAAATAAA-A-TGAAAAT-CTTAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGAAAATTGGATGTTTAGAATTTATTGACTAGAAGCCAAACCACG-AA----------------------------------------A--TTGA-A--------A-AAT-T-GTATA-ATGT----CT--------AT-TAAGCACAAATCGTCTAAG-AAAAGTAgtaattgtaaattcattcaataaaaaaattgaaagaaaaaaaagacaagagcagtgtttgaacgtataaccaattttgaacctatctctactacataacattttatataaaactattgcgttttacattacttttcatgttttctatcatactggctaaaaagtactttttgtaacagttgatcactagagttatgtccctttttggaaatggaaataaaatatataagggttgcaaacacaaacaatttctaatata
gi|6 : TAATGCAAGTAACTGATGAGAA----------------------ACATTGGA-TCAAACACAAAATGGAGGCAGCGA--TA-A-A-TAACATATCTTATTTATTGAT--GTTTACTTACCTGTATTT-------------------------------------TAT-TTTATAGATCAGATGAGAA-----AAGCTCAG--CTGACCTATATCTTAAGTTTATCTGTTAAGCTATTCTTGTAGCAAGCTCTTCGTTGTCATCATTCAATCATGACC---TGGTTTTGTTTTTTTAGCGAC-TCTTCCCTTAAACCACg
gi|7 : T----------------------CAACTGATCTATATCTTTA-AGCTCATCTGAGCA-----AA------------------------GCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCATCATTGC----TCACTACA---TGTATTTA---TTTCAGTGGCATCT---CAGAAACCACTTTTCAAGTTTGTCAAACATGGGA--TATAAGTCAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGTTAATTGGATGTTTAGAATTTAATGAATAAAAGTCAAAGCATG-AAGA--------------------TAAA---ATTCGTTTAATA--Caaaggtgagtttcatcttcaaatcagtgtaggaatatactgtactggtacatttcaatgtttattagcagtacaccttactgatacagaaa
gi|9 : cGGATTGAAGACACAACTGAGGCAATGA--TATGTT-TA--------C-----TTGCC-TGTTT-TATA--TTT-TTTAATT----------------------CATTTGAGC---A-----A-AGCTCAGCTGA-CATCTTTAAGCTCAC--CTGAGC---A----AAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTCTTCGTCAT----TCAC-ACA-----CATTCC---TTTTAGTGACTTCG---CTTAAACCAC
blockSeqs : AT G . C AT C TAA ATC AA A A C AATTTTTAGCTCACCTGAGCAAAGCT TT ACTA T T T GAAAAGCTCAGCTGACCTATATCTT G TAA T TCAA A TAT GTTT T A TCC T CTA G A A G A G CTAAAG G ACCACAGCTT A C TCAA T AACTT C A C CC C GAA TT A TAGACCTGTTATTTTGTAACCATCTGAAATTCATTAACATGTATTTTTTTT . TC C AAACTCTTATTAAAT CC A
blockSeqs : GT C . C . A TA . TT A A C AATTTTAGCTCGCTTGAGCAATGCT AC ACTG C T T CATCTTTAAGCTCACCTGAGCA A . T . G . G C A . A T G . T A . G . G TCCACA . . . . . . A T GT C AAA TG A TACACCTGTTCTTTTATAAGCAACTA . T T AACACTGT GC .
blockSeqs : A . T TT . AA T G T AATT AC ACTA C . T GCAAAGCTCACAGCTGAGCA T . T . G . G C A . A A T . . G . A . G TCCACA . . . . . . T C CC C GAA TG T AAGATAAAGTTAGTTTAATACTAATA . T C AATACTGT GC .
blockSeqs : . . T A . TT . A C . AC TCTA C . G TGAGCA G . C . G . A T T . A A G . . G . G . A TT . . . . . . C C CT C GTT TG A TTCGCTTGTTCTTTTATAACTG . T A CTAT A
blockSeqs : . . . . . . . . . . TT GC . . T TGAGAA T . T . T . C T . . . . G . . A . T . A TT . . . . . . T . CT C CT . A AAATTGAA . . . TTA .
blockSeqs : . . . . G GCAAAC T . C . . . . . . . T . . A . A . A TT . . . . . . T . . . CT . T
blockSeqs : . . . . . GCAAA T . T . . . . A . . . . . . . . . . . . . . . T
blockSeqs : G .
blockSeqCons : AATT********************** GCAAATGAGCA********************* T** AATACTAT********
originalCons : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCA-----AAGCTCAC--CTGAGC---A----AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AAT-T-ATATACATGTAA-ACT--------ATATAAGCACAAATCGTCTAAG-AAAAGTA
finalCons : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTTATTTAATT----------------------CAACTGANCTATATCTTTA-AGCTCATCTGAGCAAATGAGCA---------------------AAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGA--------------------TAAA---GTTCGTTTAATA--CTGATA--------A-AATT--ATATACATGTAATACTAT--------ATAAGCACAAATCGTCTAAG-AAAAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTCGTCTAAGAAAAGTATAATTATAAATCCTTTCAATAATAAAAAAATCCAAAGGACAGACAGCAATTAAGAAAATAATTTTGAGCAAAACTTCCTATTATAACATTGACATCTCCAAATGATTATTTAATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGATGAAATATTTTGTGATAGTTCAACTAGAATTATTCCCTTATCTTAATGGAAACAAAATTTGGGCCAAACATAATTCAATTTTTGGATAT
Unaligned ( gi|10 ): AATTATAAATCCGTAAAAAAAAAAAAAAAGGGCAGACAGCAATTTAGAAATTAATTTTGAGCGAAACTTCCTATTATAACATTGACATCTCCAAATGATTATGTGATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGACAAAGTATTTTTTGACAGTTCAACTTGAGTTATTCCCCTTATCATAATGGAAACAA
Unaligned ( gi|13 ): ATAATTTAAATGAATTAATAACAGAAAACTGAACCATGTAAACATGTTCTTATATAAGCAATTGAATTTCATTTATTTACATGTAATAAGGTATAAAACAAAATAATAAATACACTTATATAATGA
Unaligned ( gi|14 ): TTTTACAAGCAACTGATATTTATTTACATATAATACTGTATAAAACATCAAAACAAACAACCTTTTTAATAAGCACATGTTACCTAAGAAAA
Unaligned ( gi|16 ): GTAATACTGTATAAACAAATTGAAGCAAACACTAAATAAGAGCCAATCATATTTTTTTTCTTTCATACACT
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777 1111111111111111111111 1 111 111 1 9999999999999999999999 11111 77777777777777777777 1111 111 1111 111 111 1 111111 33333333333333 1111 11111 111 222222222222 11 1111 3333 11 11
lowQualScore : 888888 3 77777777777777777777777777777777777777777777777777777777777777777777777777777 8888888888888888888888 0 0 99 6 333 111 77 1 1 99 5555555555555555555555 0 66 2 5 1 4 11111 44444444444444444444 1 777 1 2222 6 000 3333 6 5 000 0 3 333 1 5 0 1 5 1 444444 4 66666666666666 5 0 5 0 0000 5 22222 5 5 7 66 1 0 555 55 1 0 333333333333 66 3 99 11 8 2222 6 9999 11 33
lowQualScore : ...... . ............................................................................. ...................... . . .. . ... ... .. . . .. ...................... . .. . . . . ..... .................... . ... . .... . ... .... . . ... . . ... . . . . . . ...... . .............. . . . . .... . ..... . . . .. . . ... .. . . ............ .. . .. .. . .... . .... .. ..
lowQualScore : 333333 7 00000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333333 8 7 22 0 333 777 33 7 7 22 6666666666666666666666 4 99 8 0 9 4 11111 88888888888888888888 9 888 4 1111 6 000 0000 3 1 000 7 5 666 0 0 0 1 0 1 444444 2 55555555555555 0 2 0 4 6666 0 55555 0 5 6 44 4 4 000 66 0 6 222222222222 22 2 22 22 0 6666 4 6666 44 22
consensus : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTT--ATTTAATT----------------------CAA--CTGANCT-ATATC-TTT-----AAGCTCATCTGAGC-A-A---------TGAGC-AAAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGATAAA---GTTCNTTTAATA--CTGATAA-AAT-T-ATATACATGTAA-ACTATATAAGCACAAATCGTCTAAGAAAAGTA
Reference ( family-360 ) : NTTATGTCTATTGAT---GTTCTTAGCTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACGAGAA----------------------ACACTGGGCTCGAACACACAACTGAGGCAACGA--TATATA-TAACAT---TCAAATATTGATACGTTTACATACCTTT--ATTTAATT----------------------CAA--CTGANCT-ATATC-TTT-----AAGCTCATCTGAGC-AAA---------TGAGC-AAAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTCGTCGTCATCGC----TCACGACA---TGTATTTG---TTTTAGCGACATCT---CTGAAACCACTTTTCAAGTTTGTCAAACATGGGN--CATGAATGAGCACCANTAAGAATAAG-A-TGAAAGT-ATGGA------CTTGT--------TC----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATNNAAATTGGATGCTNAGAATTTGATGACTAAAAGCCAAACCATG-AAGATAAA---GTTCGTTTAATA--CTGATAA-AAT-T-ATATACATGTAATACTATATAAGCACAAATCGTCTAAGAAAAGTA
gi|1 : TTATTTCTATTGATAATGTTCTTAGCTCACTGGAGCCAAAGGCTCAATGTGAGGTTTGTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACGTCTAAACCAAATTTTGATATTAGTTATAGAAATCACAAGATCAGTGTAATGCAAGTAACTGACAAGAATCCTTTCTAAAGTGATATGACCGCACTGGGCTCGAACACACAACTGAGGCAATGA--TATATA-TAACAT---TCAAATATTGATACATTTACATACGTTT--ATTTAAT-----------------------CAA--CTGATCT-ATATC-TTT-----AAGCTCATCTGAGC-AAAGCTCACATCTGAGC-AAAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCGTCATTGC----TCACTACA---TGTATTTG---TTTAAGTGACATCT---CTGAGACCAATTTTCAAGTTTGTCAAACATGGGT--CATAAATGAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAGATA-ATCCAAA----ACTTGTTCATA-TT-----ATAA-ATATTCAACTCTTTATATCATTTAAATTGGATGGTTAGAATTTAATGACTAAAAGCCAAACCATG-AAGATAAA---ATTTATTTAATA--CTGATAATAATAT-ATATATATGT----TTA-ATAAGCACAAATCGTCTAAGAAAAGTA
gi|11 : gCAAATT-AT----A----ACTTATTTACA-TA-----ATGACAAATT-AACCCTCAATA--------ATTTGATGCTAAGAATAAGATGACTAAAAGCCAAACCATG-----TACACCTGTTCTTTT-ATAAGCAACTAA-AAT-TCATATACATGTAACACTGTATAAA-ACAAA
gi|12 : GTTTGTTGAAC-TGTTCTACATGAATGAGCACAAGTAAGAATAAGAA-TGAAAGT-ACGGA------TTTGT--------TCCACAGCTT-GTTT-GCTT-AATCAAA---------TTCATCTTA-----ATAA-AAATT-AA--CCCTACATCATCT------GATGCTAAGacaagcaaacacttgctaataagtgcaaatcatctaagaaaaattacgaattgtaaat
gi|15 : agt--CATGAATGAGCACCAGTAAGAACAAT-A-TCAA--TAATGGA------TTTGT--------TCCACAGCTT-ATTtaa
gi|17 : acaaagtgtttgatgtcttgttttaTT----------------------CAT--TTGAACT-ATGTT-TTT-----AAGCTCATTT-----------------TGAGC-ATAGCTCAGTTGA---GCTATTCTTGTAGCAAGCTTTtg
gi|18 : tATCATTT-----TAGGTCATCTGAG--------------TGA-----AGCTCAAATGT---GCTATTTCTGTAGAAGGTTC
gi|19 : ATGTCTACT-AT---GTTCTTTGCTCTCTGGAGCCAAAGACTCAAGGTAAGCTTTGTTTTTAactgtca
gi|2 : TTATGTCTGTTG-T---GTTCTTAACTCACTGGAGCCAAAGGCTCAACGTGAGGTTTGTTTTTA
gi|2 : CACTGGGCCCGAACACACATCTAAGGAGATGA--TACA----GACAT---TCAAATGTTGATACATTTACATACCATC--ATTTAATTTTAGCTCGCTTGAGCAATGCT-CAA--CTAAACT-GTATC-TTT-----AAGCTCATCTGAGC-AAAGCTCACAGCTGAGC-AAAGCTCATTTGT---GTTATTTTTATAGCAAACTCTTCGTCGTCATTGC----TCACAACA---TGTATTTG---TTATAGTGACATCT---CTGAAACCACTTTTCATGTTTGTCAAATTTAGG-----TGAAT----ACCATTAAGAATAAG-A-TGAAAAT-ATAAA------CTT---------------------ACTCAAATT-ATCTAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAAGTCTCTGTAACATGAAAATTGGATGTTTAGAATTCAATGACTAAAAGCCAAACCATG-AAGATAAA---GTTAGTTTAATA--CTAATAA-AA----ATATATATGT----TTA-ATAACCACAAATCGTCTAAGAAAAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgcactgggcccgaacacacatctaaggagatgatacagacattcaaatgttgatacatttacataccatcatttaattttagctcgcttgagcaatgctcaactaaactgtatctttaagctcatctgagcaaagctcacagctgagcaaagctcatttgtgttatttttatagcaaactcttcgtcgtcattgctcacaacatgtatttgttatagtgacatctctgaaaccacttttcatgtttgtcaaatttaggtgaataccattaagaataagatgaaaatataaacttactcaaattatctaaaagttgttcatataataaatattcaagtctctgtaacatgaaaattggatgtttagaattcaatgactaaaagccaaaccatgaagataaagttagtttaatactaataaaaatatatatgtttaataaccacaaatcgtctaagaaaagt
gi|3 : ttatgtctgttgtgttcttaactcactggagccaaaggctcaacgtgaggtttgtttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatgaccgGTAATGCAAGTTACTGACGAGAA----------------------ACATTGGA-TCAAACACACAATTGAGGCAGCAA--TAAATAACAAAAT---TTATTTATTGATATGGTTACTTACCTGT--ATTTTATT----------------------T----------T-ATA---------------------GATC-AGA---------TGAGA-AAAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTTGTCATTGT----TCGTGACATATTGTGTTT----TTTTAG------CT---CTTAAACCACTTTTTAAGTTTGTCAAACAAAGGT--CA
gi|3 : --CATGAATGAGCACCAGTAAGAATAAG-AATGAAAGT-ATGGA------TTTGTACCACAGCTT----GCTT-AATCAAATTCATCTAAATCAAACTTATTTTCA-TA-----AGGA-ACAATTAACCCT--ACATCATCT------GATGCTAAGAATTAGATGACTAAAAGCTAAACCATGTTCGCT--T---GTTCTTTTATAA--CTG---A-AAT-T-CTATACATGTAATACTGTATAA--ACAAATCgtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttctacatgaatgagcaccagtaagaataagaatgaaagtatggatttgtaccacagcttgcttaatcaaattcatctaaatcaaacttattttcataaggaacaattaaccctacatcatctgatgctaagaattagatgactaaaagctaaaccatgttcgcttgttcttttataactgaaattctatacatgtaatactgtataaacaaatcaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|4 : gtaatgcaagttactgacgagaaacattggatcaaacacacaattgaggcagcaataaataacaaaatttatttattgatatggttacttacctgtattttattttatagatcagatgagaaaagctcagttaagctattcttgtagcaagctcttcgttgtcattgttcgtgacatattgtgtttttttagctcttaaaccactttttaagtttgtcaaacaaaggtcagtgtgggaatataccgtactgatacatttcaatgtttattaggagtacaccttactgaaccagaaacaaagtatcaagtgtactgttcta--CATGAAGGAGCACCAGTAAGAATGAG-ATTGAGAGC-TTGTACTAAAGCTTAT--------TT----GCTTAAATCAAATG-A-CCATA----ACTTGT--ATA-TAAACTTATAA-A-AT--AA-----TATATAATAAAAAT------CTAAGTATTTGATGACTAAATTCCAAATCATG-TAGAaaagcaaacactcagtaagtgccaatcaaattttttctttcatacaat
gi|5 : aaaacataattttacttgaaccttttaGCTCGTACACACAACTGAAGCAATGAATTCTATA-TAACAG---TCAAATATTGATTCATTTGTAAACTTTT--ATTTAATTTTTAGCTCACCTGAGCAAAGCTCAA--CTGAACT-ATATC-TTT-----AAGCTCATCTGAGC-AAA---------C---------CTCATTTGT---GTTTTTCTTGTAGCAAGCTCCTCG-CGTCTTTAC----TCATGATA---TGTATTTG---TTTTAGCGACATCT---TGGAAACCACTTTTCAAGTTTGTCAAACATGGGA--CAAAAGTGAACACCATTAAAAATAAA-A-TGAAAAT-CTTAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----AGTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGAAAATTGGATGTTTAGAATTTATTGACTAGAAGCCAAACCACG-AA--------------------A--TTGA-AA-AAT-T-GTATA-ATGT----CTAT-TAAGCACAAATCGTCTAAGAAAAGTAcctgttattttgtaaccatctgaaattcattaacatgtattttttttaaattaataaaagcaaactcttattaaatacatgcacacgtcacctaagaaaaagtagtaattgtaaattcattcaataaaaaaattgaaagaaaaaaaagacaagagcagtgtttgaacgtataaccaattttgaacctatctctactacataacattttatataaaactattgcgttttacattacttttcatgttttctatcatactggctaaaaagtactttttgtaacagttgatcactagagttatgtccctttttggaaatggaaataaaatatataagggttgcaaacacaaacaatttctaatata
gi|6 : TAATGCAAGTAACTGATGAGAA----------------------ACATTGGA-TCAAACACAAAATGGAGGCAGCGA--TA-A-A-TAACATATCTTATTTATTGAT--GTTTACTTACCTGT--ATTTTATT----------------------TTA--TAGATC--AGA-----TGAGAAAAGCTCAGCTGACCTATA---------T---CTTAAGTTTATCTGTTAAGCTATTCTTGTAGCAAGCTCTTCGTTGTCATCATTCAATCATGACC---TGGTTTTGTTTTTTTAGCGAC-TCTTCCCTTAAACCACg
gi|7 : T----------------------CAA--CTGATCT-ATATC-TTT-----AAGCTCATCTGAG------------------C-AAAGCTCATTTGT---GCTATTCTTGTAGCAAGCTCTTTGTCATCATTGC----TCACTACA---TGTATTTA---TTTCAGTGGCATCT---CAGAAACCACTTTTCAAGTTTGTCAAACATGGGA--TATAAGTCAGCACCATTAAGAATAAG-A-TGAAAAT-ATGAA------CTTAT--------TT----GCTT-ACTCAAATT-ATCCAAA----ACTTGTTCATA-TA-----ATAA-ATATTCAACTCTCTATATCATGTTAATTGGATGTTTAGAATTTAATGAATAAAAGTCAAAGCATG-AAGATAAA---ATTCGTTTAATA--Caaaggtgagtttcatcttcaaatcagtgtaggaatatactgtactggtacatttcaatgtttattagcagtacaccttactgatacagaaa
gi|9 : cGGATTGAAGACACAACTGAGGCAATGA--TATGTT-TA--------C-----TTGCC-TGTTT-TATATTTTTTAATTCATTTGAG-------------------CAAAGCTCAGCTGACATC-TTT-----AAGCTCACCTGAG------------------C-AAAGCTCAGTTAA---GCTATTCTTGTAGCAAGCTCTTCGTCTTCGTCAT----TCAC-ACA-----CATTCC---TTTTAGTGACTTCG---CTTAAACCAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GTCGTCTAAGAAAAGTATAATTATAAATCCTTTCAATAATAAAAAAATCCAAAGGACAGACAGCAATTAAGAAAATAATTTTGAGCAAAACTTCCTATTATAACATTGACATCTCCAAATGATTATTTAATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGATGAAATATTTTGTGATAGTTCAACTAGAATTATTCCCTTATCTTAATGGAAACAAAATTTGGGCCAAACATAATTCAATTTTTGGATAT
Unaligned ( gi|10 ): AATTATAAATCCGTAAAAAAAAAAAAAAAGGGCAGACAGCAATTTAGAAATTAATTTTGAGCGAAACTTCCTATTATAACATTGACATCTCCAAATGATTATGTGATAAAACTGTTTTAAATTTAATTTTCTGTCATGTTGATAAAAATCTGACAAAGTATTTTTTGACAGTTCAACTTGAGTTATTCCCCTTATCATAATGGAAACAA
Unaligned ( gi|13 ): ATAATTTAAATGAATTAATAACAGAAAACTGAACCATGTAAACATGTTCTTATATAAGCAATTGAATTTCATTTATTTACATGTAATAAGGTATAAAACAAAATAATAAATACACTTATATAATGA
Unaligned ( gi|14 ): TTTTACAAGCAACTGATATTTATTTACATATAATACTGTATAAAACATCAAAACAAACAACCTTTTTAATAAGCACATGTTACCTAAGAAAA
Unaligned ( gi|16 ): GTAATACTGTATAAACAAATTGAAGCAAACACTAAATAAGAGCCAATCATATTTTTTTTCTTTCATACACT