lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111
lowQualScore : 1 111 222 11 11 1111 1 22 3333333333333 9999999999999999999999999999 1 11 1111111 11111 1111 111 111 2222 222222222 11111111111111 111 11 1 111111 0000000000000000000000000000000000000000000000000000000000000000000000 22222222222222222222222 111 111 1111 1 22222 99999999999 1 4444444444 111111 1 1111111 1111 444444444444444444444444 22222222 33333333333333
lowQualScore : 5 1 777 333 88 3 88 8888 7 6 11 0 6 1111111111111 7 3333333333333333333333333333 2 9 3 3 4 3 3 3 1 2 88 3 2 0 1111111 9 0 1 66666 2 2222 4 66 666 77 2 7 111 0000 88888 55 666 666666666 99 44444444444444 7 55 44 1 777 11 2 1 000000 0 4444444444444444444444444444444444444444444444444444444444444444444444 2 00000000000000000000000 000 444 9999 2 00000 11111111111 5 8888888888 0 7 444444 5 6666666 0000 888888888888888888888888 44444444 99999999999999
lowQualScore : . . ... ... .. . .. .... . . .. . . ............. . ............................ . . . . . . . . . . .. . . . ....... . . . ..... . .... . .. ... .. . . ... .... ..... .. ... ......... .. .............. . .. .. . ... .. . . ...... . ...................................................................... . ....................... ... ... .... . ..... ........... . .......... . . ...... . ....... .... ........................ ........ ..............
lowQualScore : 0 0 777 333 33 7 33 0000 0 0 00 7 7 7777777777777 0 8888888888888888888888888888 2 7 6 6 5 6 6 6 3 1 11 1 2 3 8888888 8 3 2 99999 5 3333 4 11 888 22 3 5 444 5555 99999 00 888 555555555 22 88888888888888 3 22 22 0 888 22 8 7 333333 1 4444444444444444444444444444444444444444444444444444444444444444444444 3 88888888888888888888888 000 000 7777 0 00000 00000000000 0 5555555555 4 1 444444 5 2222222 6666 111111111111111111111111 22222222 22222222222222
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAANTATAACATAATAATAACGGGAAA--AAAA-GATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGAATCCATGCATTGCGCATT-AACATAAAACCAATT-TATTTGAAAATTTACAAAAC------CA---ATTTT-T--TTTTT---CATATCATTTTGCTACCGACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTGAGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AA-TATAGC---AAAAAATATGT-AAAAAAG-TATATGTTAAATATGCA---TAC----AATGATTT----GT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTANATT-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGA----T-------GG-----GGG-T--------GT--GNG-----------T-----------TAT-----AAATAGCCACTATTAAA-CGGAAGATGGG-----------TCCTCCAGACT---TATAATTACTTGCCTAA-N-CCAGTGACTTAATNAATTGTTTATATGTCT-CTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC-A-AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----AT------------------------ACAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( gi|2 ) : AGATTCACTGCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATTTTATTTGAAAATTTACAAAAC------CA---ATTTT-T--T-------CATATCATTTTGCTACTGATGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTAAGAATCAGTATACAAA-------AATACTTGTAATCAATCTTGTATACTGAG-AA-TATAGC---AAAAAATATGT-GAAAAAG-TATATATTAAATAAGCA---TAC----AATGATTT----GT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGATT-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGA----T-------GA-----GGG-T--------G---GGA-----------T-----------TAT-----AAATAGCTACTATTAAA-----------G-----------TCCTCCAGACT---TATAATTACTTGCCTAA-T-CCAGTGACTTAATAAATTGTTTATATGTCT-CTGCCTAAACCAA-----ATAGGACAATGGGCTC-----T-----TTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAGAACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----AT------------------------ACAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|5 : GGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAA--AA-----TGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGTATTTGAAAATTTACAAAAC------GATTTATTTTAT--T-------CATATCATTTTGCTACCGACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTAAGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AAATATAGC---AAAAA-TATGT-AAAAAAAATATATGTTACATATGCA---TAC----AATGATTT----GT--TTTT---AAA--------TAAG--TATC---------TG-T-TCAGATT-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGA----T-------G------GGG-T--------G---GGG-----------T-----------TAT-----AAATAGCTACTATTAAACCGGAAGATGGG-----------TCCTCCAGACT---TATAATTACTTGTCTAA-T-CCAGTGACTTAATAAATTGTTTATTTGTCT-CTGCCTAAACCAA-----ATAGGTCAATGGGCTT-----TAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACAAGAACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----AT------------------------GCAA--------ACTAG--------------TTTTCAAA
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAAAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGA
gi|9 : TTCACTTCCAGTGCATTTTTCAAAATATGTTTCT-TGCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAA--AAAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCATT----------------------GAA----TATAAAAC------CATC-ATTAT-TCAT-------GATACCATTTTGCTACAGACGAGTAATGAAT-GGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTAAGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAGAAA-TATAGC---AAAAAATATGTAAAAAAAG-TATATGTTGAATATGCA---AAC----AATGAATT----GT--TTTT-T-AAA---------A--------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|6 : gCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATTTTATTTGAAAATTAAGAAAAC------GA---TTTTT-T--TTTATT--CATATCATTTTGCTACCGACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTAAGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AAATATAGC---AAAAAATATGT-AAAAAAA-TATATGTTAAATATGCA---TAC----AATAATTT----GT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGATT-TT-GTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGA----T-------GG-----GGA-T--------G---GGA-----------T-----------TAT-----AAGTAGCTACTATTAAA-----------G-----------TCCTCCAGACT---TATAATTACTTGCCTAA-A-CCAGTGACTTAATTAATTGTTTATATGTCT-CTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACACGAGAACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----AT------------------------ACAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACTaagattggatggattgttctaatgtattacta
gi|11 : TATTTGAAAATTTACA----------------TTTT-T--TTATT---CATATCATTTTGCTACCGACAAGTAATGAAT-GAG-------------ATTTCA-TCATTTATAAATATTTTTAAGATTCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AAATATAGC---AAAACATATGT-AAAAAGG-TATATGTTAAATATGCA---TAT----AATGATTT----GT--TTT--T-AAA--------TAAG--TATC---------TG-T-TTAGATT-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Ag
gi|19 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaTGAAAATTTACAAAATGAAAAACA---ATTTT-T--TTTTTATTCATTTCATTTTGCTACCGACGAGTAATGAATGGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAA-AATTT---------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACTAAGAAA-TATAGC---AAAATATATG
gi|3 : GAAAATTTACAAAACGAAAAACA---ATTTT-T--TTTTATT-CATATCATTTTGCTACCGACGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TTATTTATAAATA--TTT--------GTATACAAA-------AATACTCGTAATCGATCTTGTATACTAAG-AAATATAGC---AAATTATACGT-AAAAAAG-TATATGTTAAATATGCA---TAC----AATGATTT----AT--TTTT-T-AAA--------TTAG--TATC---------TG-T-TTATATT-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGA----TGGGGTGGGG-----GGG-T--------GT--GGG-----------TGGGGGTGAAGGTAT-----ATATAGCTACTATAAAAGCGGAAGATGGG-----------TCCTCCAGACT---TATAATTACTTGCCTAA-A-CCAAT
gi|1 : GCTGTTAAAGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTGGGAATCAAGATTCCAA-------AACACTAACAATCAATCTAATACACTTA---A-TAAAG------AAAAT-TAT-GAAAA---TTTA-ATTAAAAAAAAAAA-TACTT--AA-AATTTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TG-CCTTGTATT-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCT-------CA-----GGG-A--------T---GTACGTCATT----T-----------TAA-----AAATAGCCACTATatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacaCTGTTAAAGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTGGGAATCAAGATTCAAA-------AAAAATAACAATCAATCTAATACACT--A-AA-TAAAG------AAAAT-TAT-GAAAA---TATA-ATTAAA-AAAAA---TACTTAAAATTCTCT----AT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCC-TTGTATT-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGA----TTTCTC--GG-----GGA-T--------GT--ACG-----------T-----------TATTTTAAAAATAGCCATTATagccgaagaacaggcttccagtctctgtgtctatgtctctgg
gi|7 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaaCTGTTAAAGAATAGTAGGT-GGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTGGGAATCAAGATTCAAA-------AACACTAACAATCAATCAAATACACTAA---A-TAAAG------AAAAT-TAT-GAAAA---TATA-ATTAAA-AAAAA---TACTTAAAAT-ATCT----CTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTG-CCTTGTATT-GTTTTTT--CAATATG---GCCGACGAC---GCTATAATCAAATCACGTGACTC-----TCGGGATTTCT-------CA-----GGGAT--------GT--ACG-----------T-----------TATTTTAAAAATAGCCACTATagcggaagaacaggcttccggtttctgtgtctatgtctctg
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacagcggaaaaatgtttttgcaagttcaataatcaaGAGTAATGAAT-GGGGAAA-GG-G-TTGATTTCA-TCATTT-TAAATATTTTTAAGAATCAGTATACAAA-------AATACTCGT----AATCTTGTATACTGAGAAA-TATAGCAAAAAAAAAAATGT-AAAAAAG-TATATGTTAAATATGTA---TAC----AATGATTT----TT--TTTT-T-ATA--------TAAG--TTTA---------TG-T-TTAGATT-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGA----T-------GG-----GGG-TGAGGGAAGG---GGG-----------T-----------TAT-----AAATAGCTACTATTAAAGCGGAAGATGGG-----------TCCTCCTGATT---TATAATTACTTACCTAA-A-CCAGTGACTTATTTGATTGTT--TATGTCT-CTGCCTAAACCAA-----AAAGGACAATGTGCTCTAACAT-----TTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA--A--------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTagtggaagaacaggcttccagcctcggtgtctatgtctctgt
gi|18 : AATGGAC-GATG-AA-CGTG-TTGATTTTA-TGATTT-----T--TCTTGAGA-TAAGAATCCAAA-------AACACTGGAAATCAATCTGGTGTACTGA--AA-TA-------AAGAAACAT-T-TAAAACT-TATATGCGAAGTAAGCCCTTTAC-------GACTT----TT--TTAT-C-AAA--------AATA--TATC----------G-T-TCA---------------AAAATG---GCTGACA--------ATGATTTGATCACGTGACTT------TAG
gi|10 : tgaaaaatacaaTTAAATATGCA---TAT----AATGATTT----GT--TTTT-TTAAA--------TAAG--TATC---------TG-T-TTAGATT-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGA----T-------GAAAGTGGGG-T--------G---GGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTATTAAA-----------GCGGAAGATGGGTCCTCCAGCCT---TATAATTGCTTGCCTAA-A-CCAGTGACTTAATTAATTGTTTATATGTCT-CTGCCTAAACCAAAGAGGACAGGACAACGAACTCTAACAT-----TTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAA--------AACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----AT------------------------ATA
gi|20 : --TATC---------TG-CCTTGTATTGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGA----TTTCTC--GG-----GGA-T--------GT--ACA-----------T-----------TATTTTAAAAATAGCCACTATtaaa
gi|21 : catagacaATC---------TG-CCTTGCATT-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCT----C-------GG-----GGA-T--------GTATGTATG---------T-----------TAA-----AAATAGCCACTATagcggaagaacaatcttccagtctctgtgtctatgtctctgc
gi|12 : gacatagacgAATTT-----AT--GA----T--------A-----GAA-A--------A---AAA-----------T-----------TATC----AAATAAC-ACT-----------------------------TTCTTAAGACT---T----TTTTTTAC-TGA-TATCAGTGACTTAATA----GTTTATATGTCTGCTGagcaaaagaacaggcttccagtctctgtgtctatgtctc
gi|24 : cttgattaattgtttgtatgtctctgcctaaaccaaataggacaatgggctctaacattttaatatcgaaatgtcaaaagaacaaacattttagtttataggaacaaacgacaacacacacggcagttttgtgtatatcatattggtcatgtattagtatctctaattgaagctttaactgttttataatacaaactagttttcaaaatatTTCAGATTCTCTACAATTA-TTGTATAAAT-CCAGTGCCTTAATTAATTGTTTATATGTCT-CT-CATAAATCgttgaaaatggaatagttgtt
gi|27 : atagatacagttaaacaacagaggactagtacacattCCTAA-T-C-AGTGACTTAAT----TGTTTATATGTCT-CTGCCCTAACC
gi|6 : CAGTGACTTAATA----GTTTATATGTCTGCTG
gi|3 : ccaagttccagcgcacagatcataatataactgtacggatccatgcattgaatataaaaccaattttatttgaaaattaagaaaacgatttttttttattcatatcattttgctaccgacgagtaatgaatggggaagggttgatttcatcacttataaatatttttaagaatcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaaaatatgtaaaaaaatatatgttaaatatgcatacaataatttgttttttaaataagtatctgtttagattttgtttcaaaatgattaccgacgacgacgctataatttaattacgtaatttataggatggggatgggattataagtagctactattaaagtcctccagacttataattacttgcctaaaccagtgacttaattaattgtttatatgtctctgcctaaaccaaataggacaatgggctctaacatttcaatatcgaaatgtcaaaagaacaaacattttagttaataggaacacacgagaacaaacacggcaatgttgtgtctatcatattggtcatgtattagtatctctaattgaagttttaactttttttataatacaaactatttttcaaaatatCAGTGACTTTATA----GTTTATATGTCTGCTG
gi|12 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaaccaatatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatCTTGATTAATTGTTTGTATGTCT-CTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAACGACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----AT------------------------ACAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACTatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC----------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----AT------------------------ACAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTgatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|23 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC----------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----AT------------------------Agatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|14 : AAAGAACAAACATTTTAGTTTATAGAAACACAC----------ATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATAT------------------------ATAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTt
gi|27 : ttgcaatagaacCAG-AGACATATAAACAATTAAGTCACTgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAAAAAGGTTCTATTCACACTAATTTACAACCATGCCGAATGATGCACGGGGTACATGTCTATTTCAACATTTATAATTAGTCTTGCTGGAGAATCAGTATTCAAAACACTCTAAATAAAAAGATAAAACAACTATATGTGAAATATACGCCAACTACTTTACTCTTTCAAAAACATGTTTAGATAAATTTTTTTAAACGATAATTGGATCACGTGATTCTTGGAGTGCATGTGTTCGTTATGAATAGCTACTATATAGCGGAAGAACGGACTGCGAGTCTCACTGAAAGTTATGATGTAACTGTATGTAC
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT
Alignments
lowQualScore : 1 1 111 11 33333333 3 111 4444444444 11111 1 1111111 22 222222222 111111111 111 111 1111111 55555555555555555555555555555555555555555555555555555555555555555 22222 1111 11111 6666666666 44444444444 111111 1 1111111 444444444444444444444444 22222222 33333333333333
lowQualScore : 0 0 777 33 1 33333333 2 2 0 2 3 888 0 1 1111111111 5 0 22222 888 66 3 6 2 3 3 3 2 77777 0 0 0000000 0 1 00 6 2 8888 888888 555 888 3 1 555 555 555 3 2 555 4444 3 3 444444444 77 000000000 000 4 444 33 33 666 55 0000000 11111111111111111111111111111111111111111111111111111111111111111 11111 0000 5 2 666 66 5 66666 6666666666 55555555555 222222 2 4444444 9999 222222222222222222222222 00000000 33333333333333
lowQualScore : . . ... .. . ........ . . . . . ... . . .......... . . ..... ... .. . . . . . . . ..... . . ....... . . .. . . .... ...... ... ... . . ... ... ... . . ... .... . . ......... .. ......... ... . ... .. .. ... .. ....... ................................................................. ..... .... . . ... .. . ..... .......... ........... ...... . ....... .... ........................ ........ ..............
lowQualScore : 0 0 555 88 0 00000000 5 5 0 0 2 000 7 4 7777777777 0 1 66666 888 99 1 2 3 1 1 1 4 88888 5 8 0000000 7 4 11 2 6 8888 888888 444 222 7 2 444 444 444 1 1 444 6666 1 1 888888888 99 777777777 999 5 777 33 77 666 11 3333333 33333333333333333333333333333333333333333333333333333333333333333 88888 2222 7 5 444 00 9 77777 2222222222 33333333333 888888 8 4444444 4444 888888888888888888888888 77777777 66666666666666
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-TT-GCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAAA---AAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATT-TTATTTGAAAATTTACAAAAC------CAATTT-TTTTN-T--T---CATATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAGAAA-TATAGC---AAA------AAAT---ATGT-AAAAAAGTATATGTT---AAATA---TGCA---TACAA-TGATT---TGT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTGCG----------T-----------TAT-----AAATAGCTACTATTAAG-CGGAAG-ACGGGTCCTCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--A--ACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( family-354 ) : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-TT-GCATCTG---TGTAAA--ACAANTATAACATAATAATAACGGGAAAA---AAA-GATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGAATCCATGCATTGCGCATT-AACATAAAACCAATT-T-ATTTGAAAATTTACAAAAC------CAATTT-TTTTT-T--T---CATATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AA-TATAGC---AAA------AAAT---ATGT-AAAAAAGTATATGTT---AAATA---TGCA---TACAA-TGATT---TGT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTANAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTGNG----------T-----------TAT-----AAATAGCCACTATTAAA-CGGAAG-ATGGGTCCTCCAGACT---TATAATTACTTGCCTAAN-CCAGTGACTTAATNAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--A--A--ACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|1 : GAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTG----GGAATCAAGATTCCAA-------AACACTAACAATCAATCTAATACACTTA---A-TAAAGA---AAATTATGAAAATTTAAT-T-AAAAAA------------AAAAA---TACT---TAAAA-T--TTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TG-CCTTGTAT---T-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCTCA-----GGG-------AT-------GTACG----------T-----------CATTTTAAAAATAGCCACTAT--AG-CCGAAGAACAGG-CTTCCAGTCT---
gi|10 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacagctgttaaaTT---AAATA---TGCA---TATAA-TGATT---TGT--TTTT-TTAAA--------TAAG--TATC---------TG-T-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGAT-----GAAAGTGGG-------GT-------GGGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTATTAAAGCGGAAG-ATGGGTCCTCCAGCCT---TATAATTGCTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAAAGAGGACAGGACAACGAACTC-----TAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGA--------A--A--ACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----ATA------------------------TActgtgtctatgtctctgg
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAA-AATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGAtaaa
gi|11 : -T-ATTTGAAAATTTACA-------------TTT-TTTTA-T--T---CATATCATTTTGCTACC--GACAAGTAATGAAT-GAG-------------ATTTCA-TCATTTATAAATATTTTTA----AGATTCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAGAAA-TATAGC---AAA------ACAT---ATGT-AAAAAGGTATATGTT---AAATA---TGCA---TATAA-TGATT---TG---TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGAT---T-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Aatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|12 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaCTTGATTAATTGTTTGTATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACAT-----TTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAAC--G--ACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|13 : -TTCTA-T--T---CACACTAATTTACAACCATGCCGAATGATGCAC-GGGGTAC-AT-G-TCTATTTCA-ACATTTATAATTAGTCTTGCTGGAGAATCAGTATTC-AA-------AACACTC-TAA----------ATA------------------AAA------AGAT---A----AAACAACTATATGTG---AAATA---TACG---C-CAACTACTT---TAC--TCTT-T-CAA---------AAA--CA-----------TG-T-TTAGATAAAT-TT--TTT--TAAA--------CG-----------ATAATTGGATCACGTGATTC-----TTGGAGT-----G-----CAT-------GT-------GTTCG----------T-----------TAT-----GAATAGCTACTATATAG-CGGAAG-Agatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|14 : aaaaaaggAAAGAACAAACATTTTAGTTTATAG----------A--A--ACACACATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATATA------------------------TAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTacggactgcgagtctcactgaaagttatgatgtaactgtatgtac
gi|18 : ttgcaatagaacAATGGAC-GATG-AA-CGTG-TTGATTTTA-TGATTT-------TTCTTG----AGA-TAAGAATCCAAA-------AACACTGGAAATCAATCTGGTGTACTGA--AA-TA-------AAG------AAAC---ATTT--AAAACTTATATGCG---AAGTA---AGCCCTTTAC----GACT---TTT--TTAT-C-AAA--------AATA--TATC----------G-T-TCA------------------AAAATG---GCTGACAATGAT-------TTG-ATCACGTGACTT------TAGgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
gi|19 : tgaaaaatacaaTGAAAATTTACAAAATGAAAAACAATTT-TTTTT-T--TATTCATTTCATTTTGCTACC--GACGAGTAATGAATGGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAAAATTT--------------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACTAAGAAA-TATAGC---AAA------ATAT---ATG
gi|2 : GATTCACTGCTAGTGCATTTTTCAAAATATGTTT-TT-GCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAAA---AAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATT-TTATTTGAAAATTTACAAAAC------CAATTT-T-----T--T---CATATCATTTTGCTACT--GATGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTA----AGAATCAGTATACAAA-------AATACTTGTAATCAATCTTGTATACTGAG-AA-TATAGC---AAA------AAAT---ATGT-GAAAAAGTATATATT---AAATA---AGCA---TACAA-TGATT---TGT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGAT-----G-----AGG-------GT-------G-GGA----------T-----------TAT-----AAATAGCTACTATTAAA------------GTCCTCCAGACT---TATAATTACTTGCCTAAT-CCAGTGACTTAATAAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC----------TTTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAG--A--ACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|20 : a--TATC---------TG-CCTTGTAT---TGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGATTTCTCG-----GGG-------AT-------GTACA----------T-----------TATTTTAAAAATAGCCACTAT--AG-CGGAAG-AACAATCTTCCAGTCT---
gi|21 : catagacaATC---------TG-CCTTGCAT---T-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCTC-----G-----GGGATGT---AT-------GTATG----------T-----------TAA-----AAATAGCCACTAT--AG-CAAAAGAACAGG-CTTCCAGTCT---ctgtgtctatgtctctgc
gi|23 : gacatagacgATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACA--------------CACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------ctgtgtctatgtctc
gi|24 : TTCAGATTCTCTACAATTA-TTGTATAAATCCAGTGCCTTAATTAATTGTTTATATGTCTCT-CATAAATCt
gi|27 : atagatacagttaaacaacagaggactagtacacattCCTAAT-C-AGTGACTTAAT----TGTTTATATGTCTCTGCCCTAACC
gi|3 : GAAAATTTACAAAACGAAAAACAATTT-TTTTT-TATT---CATATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TTATTTATAAATATTT--------------GTATACAAA-------AATACTCGTAATCGATCTTGTATACTAAG-AAATATAGC---AAA------TTAT---ACGT-AAAAAAGTATATGTT---AAATA---TGCA---TACAA-TGATT---TAT--TTTT-T-AAA--------TTAG--TATC---------TG-T-TTATAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGAT-----G-----GGGTGGGGGGGT-------GTGGG----------TGGGGGTGAAGGTAT-----ATATAGCTACTATAAAAGCGGAAG-ATGGGTCCTCCAGACT---TATAATTACTTGCCTAAA-CCAAT
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACA--------------CACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTG----GGAATCAAGATTCAAA-------AAAAATAACAATCAATCTAATACACT--A-AA-TAAAG-----AA------AATT---ATG-----AAAATATA-ATTAAAAAAAA---TACT---TAAAA-TTCTC---TAT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCC-TTGTAT---T-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGATTTCTCG-----GGG-------AT-------GTACG----------T-----------TATTTTAAAAATAGCCATTAT--AG-CGGAAG-Agatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaactgttaaaGGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-TT-GCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAAA---A-----TGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGT-ATTTGAAAATTTACAAAA-------CGATTTATTTTA-T--T---CATATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAGAAA-TATAGC----AA------AAAT---ATGTAAAAAAAATATATGTT---ACATA---TGCA---TACAA-TGATT---TG---TTTT-T-AAA--------TAAG--TATC---------TG-T-TCAGAT---T-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGAT-----------GGG-------GT-------G-GGG----------T-----------TAT-----AAATAGCTACTATTAAACCGGAAG-ATGGGTCCTCCAGACT---TATAATTACTTGTCTAAT-CCAGTGACTTAATAAATTGTTTATTTGTCTCTGCCTAAACCAA-----ATAGGTCAATGGGCTT-----TAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--AAGA--ACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----ATG------------------------CAA--------ACTAG--------------TTTTCAAAacaggcttccggtttctgtgtctatgtctctg
gi|6 : CCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATT-TTATTTGAAAATTAAGAAAAC------GATTTT-TTTTTAT--T---CATATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAG-AAATATAGC---AAA------AAAT---ATGT-AAAAAAATATATGTT---AAATA---TGCA---TACAA-TAATT---TGT--TTTT-T-AAA--------TAAG--TATC---------TG-T-TTAGAT---T-TT-GTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGAT-----G-----GGG-------AT-------G-GGA----------T-----------TAT-----AAGTAGCTACTATTAAA------------GTCCTCCAGACT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACAT-----TTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACAC--G--AGAACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|7 : GAATAGTAGGT-GGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTG----GGAATCAAGATTCAAA-------AACACTAACAATCAATCAAATACACTAA---A-TAAAG-----AA------AATT---ATG-----AAAATATA-ATT---AAAAAAAATACT---TAAAA-T-ATC---TCTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTG-CCTTGTAT---T-GTTTTTT--CAATATG---GCCGACGA---CGCTATAATCAAATCACGTGACTC-----TCGGGATTTCTCA-----GGG-------AT-------GTACG----------T-----------TATTTTAAAAATAGCCACTAT--AG-TGGAAGAACAGG-CTTCCAGCCT---g
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacagcggaaaaatgtttttgcaagttcaataatcaactgttaaaGAGTAATGAAT-GGGGAAA-GG-G-TTGATTTCA-TCATTT-TAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGT----AATCTTGTATACTGAGAAA-TATAGCAAAAAA------AAAA---ATGT-AAAAAAGTATATGTT---AAATA---TGTA---TACAA-TGATT---TTT--TTTT-T-ATA--------TAAG--TTTA---------TG-T-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGAT-----G-----GGG-------GTGAGGGAAGGGGG----------T-----------TAT-----AAATAGCTACTATTAAAGCGGAAG-ATGGGTCCTCCTGATT---TATAATTACTTACCTAAA-CCAGTGACTTATTTGATTGTT--TATGTCTCTGCCTAAACCAA-----AAAGGACAATGTGCTC-----TAACATTTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA---A-----------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTcggtgtctatgtctctgt
gi|9 : GTTCACTTCCAGTGCATTTTTCAAAATATGTTTCTT-GCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAAA---AAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCATTGAATATAAAACCA--T-C-ATT-----ATTCA----------------------------T---GATACCATTTTGCTACA--GACGAGTAATGAAT-GGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTGAGAAA-TATAGC---AAA------AAAT---ATGTAAAAAAAGTATATGTT---GAATA---TGCA---AACAA-TGAAT---TGT--TTTT-T-AAA---------A-----------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAAAG-----ATTGGAT-----G-----G
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT
Alignments
lowQualScore : 111 111 11 111 4444444444 11 1 1111111 111111 111 222222222 111111111 1 111 1111111 5555555555555555555555555555555555555555555555555555555555555555 2222 1 11111 444444444444 111111 1 1111111 444444444444444444444444 22222222 33333333333333
lowQualScore : 111 777 33 0 777 3 2 2 3 0 1 1111111111 11 0 99 888 66 9 2 3 3 3 2 77777 0 0 0000000 0 2 444444 44 2 33 555 555 888 3 1 000 555 2 3 555 4444 3 3 444444444 77 000000000 3 5 444 33 1 33 666 55 0000000 3333333333333333333333333333333333333333333333333333333333333333 2222 666 555 5 33 7 88888 1 555 88 0 66666 444444444444 222222 2 4444444 9999 222222222222222222222222 00000000 33333333333333
lowQualScore : ... ... .. . ... . . . . . . .......... .. . .. ... .. . . . . . . ..... . . ....... . . ...... .. . .. ... ... ... . . ... ... . . ... .... . . ......... .. ......... . . ... .. . .. ... .. ....... ................................................................ .... ... ... . .. . ..... . ... .. . ..... ............ ...... . ....... .... ........................ ........ ..............
lowQualScore : 000 555 88 2 000 5 5 5 2 7 4 7777777777 99 1 55 888 99 2 3 1 1 1 4 88888 5 8 0000000 8 6 888888 22 5 88 444 444 222 7 2 888 444 8 1 444 6666 1 1 888888888 99 777777777 3 0 777 33 7 77 666 11 3333333 3333333333333333333333333333333333333333333333333333333333333333 2222 333 444 4 33 3 33333 0 888 66 5 77777 222222222222 888888 8 4444444 4444 888888888888888888888888 77777777 66666666666666
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT--TTTTA-TT---CATATCATTTTGCTACC--GACGAGTAATGAATGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-------G-----GGG----GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AA-G-CG---GAAGAACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( family-354 ) : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT--TTTTN-TT---CATATCATTTTGCTACC--GACGAGTAATGAATGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-------G-----GGG----GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AA-G-CG---GAAG-ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|1 : GAATAGTGGGTGGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTG----GGAATCAAGATTCCAAAA-------CACTAACAATCAATCTAATACACTTAATAAAGAAAATTATG----AAAATTTAA---T-T-AAAAAA---------AAAAA---TACT---TAAAAT---TTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TGCCTTGTAT---T-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCTC--A-----GGG----AT-------GTA--------CG--T-----------CATTTTAAAAATAGCCACTAT----A-G-CC---GAAGAACAGG-CT-----TCCAGTCT---
gi|10 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacagctgttaaaTTAAATA---TGCA---TATAATGA-TT---TGT--TTTT-TTAAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGAT-------GAAAGTGGG----GT-------GGGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTAT-T-AAAG-CG---GAAG-ATGGGTCC-----TCCAGCCT---TATAATTGCTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAAAGAGGACAGGACAACGAACTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAA----------AACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----ATA------------------------TActgtgtctatgtctctgg
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAAAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGAtaaa
gi|11 : TATTTGAAAATTTACA-------------TTT--TTTTA-TT---CATATCATTTTGCTACC--GACAAGTAATGAATGAG-------------ATTTCA-TCATTTATAAATATTTTTA----AGATTCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAACAT---A---TGT-AAAAAGGTATATGTTAAATA---TGCA---TATAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Aatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|12 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaCTTGATTAATTGTTTGTATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAAC--GACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|13 : --TTCTA-TT---CACACTAATTTACAACCATGCCGAATGATGCACGGGGTAC-AT-G-TCTATTTCA-ACATTTATAATTAGTCTTGCTGGAGAATCAGTATTCAAAA------------------CACTCT----------------AAA--TA----AAAAGAT---A-------AAACAACTATATGTGAAATA---TACG---C-CAACTACTT---TAC--TCTT-T-CAA---------AAA--CAT-----------GT-TTAGATAAAT-TTT--TT--TAAA-----------------CG--ATAATTGGATCACGTGATTC-----TTGGAGT-------G-----CAT----GT-------GTT--------CG--T-----------TAT-----GAATAGCTACTAT-A-TA-G-CG---GAAGAACGGgatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|14 : aaaaaaggAAAGAACAAACATTTTAGTTTATAGAAACACAC------------ATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATATA------------------------TAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTactgcgagtctcactgaaagttatgatgtaactgtatgtac
gi|18 : ttgcaatagaacAATGGACGATG-AA-CGTG-TTGATTTTA-TGATTT-------TTCTTG----AGA-TAAGAATCCAAAAA-------CACTGGAAATCAATCTGGTGTACT-------GAAA--TA----AAGAAAC---A---TTT--AAAACTTATATGCGAAGTA---AGCCCTTTAC---GA-CT---TTT--TTAT-C-AAA--------AATA--TATC----------GT-TCA------------------AAAATG---GCTGACAATGAT-------TTG-ATCACGTGACTT------TAGgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
gi|19 : tgaaaaatacaaTGAAAATTTACAAAATGAAAAACAATTT--TTTTT-TTATTCATTTCATTTTGCTACC--GACGAGTAATGAATGGGGGAA-GG-G-TTGATTTCA-TCATTTATAAAAATTT--------------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACT-----AAGAAA--TATAGCAAAATAT---A---TG
gi|2 : GATTCACTGCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT--T-----TT---CATATCATTTTGCTACT--GATGAGTAATGAATGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTA----AGAATCAGTATACAAAAA-------TACTTGTAATCAATCTTGTATACT-----GAG-AA--TATAGCAAAAAAT---A---TGT-GAAAAAGTATATATTAAATA---AGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGAT-------G-----AGG----GT-------G-G--------GA--T-----------TAT-----AAATAGCTACTAT-T-AA----------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAT-CCAGTGACTTAATAAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TTTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAG--AACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|20 : a--TATC---------TGCCTTGTAT---TGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGATTTCTC--G-----GGG----AT-------GTA--------CA--T-----------TATTTTAAAAATAGCCACTAT----A-G-CG---GAAG-AACAATCT-----TCCAGTCT---
gi|21 : catagacaATC---------TGCCTTGCAT---T-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCTC-------G-----GGGATGTAT-------GTA--------TG--T-----------TAA-----AAATAGCCACTAT----A-G-CA---AAAGAACAGG-CT-----TCCAGTCT---ctgtgtctatgtctctgc
gi|23 : gacatagacgATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------ctgtgtctatgtctc
gi|24 : ATAGATACAGT-T-AA-A-CAACAGAGG-ACTAGTACACATTTTCAGATTCTCTACAATTA-TTGTATAAATCCAGTGCCTTAATTAATTGTTTATATGTCTCT-CATAAATCt
gi|27 : CCTAA--TCAGTGACTTAA----TTGTTTATATGTCTCTGCCCTAACC
gi|3 : GAAAATTTACAAAACGAAAAACAATTTTTTTTTA-TT---CATATCATTTTGCTACC--GACGAGTAATGAATGGGGAAA-GG-G-TTGATTTCA-TTATTTATAAATATTT--------------GTATACAAAAA-------TACTCGTAATCGATCTTGTATACT-----AAGAAA--TATAGCAAATTAT---A---CGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TAT--TTTT-T-AAA--------TTAG--TATC---------TGT-TTATAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGATGGGGTGGG-----GGG----GT-------GTG--------GG--TGGGGGTGAAGGTAT-----ATATAGCTACTATAA-AA-G-CG---GAAG-ATGGGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAAT
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacGAATAGTGGGTGGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTG----GGAATCAAGATTCAAAAA-------AAATAACAATCAATCTAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAATTC-TC---TAT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCCTTGTAT---T-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGATTTCTC--G-----GGG----AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCATTAT----A-G-CG---GAAGAACAGG-CT-----TCCGGTTT---gatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaactgttaaaGGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAA-------AATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGTATTTGAAAATTTACAAAA-------CGATTTA-TTTTA-TT---CATATCATTTTGCTACC--GACGAGTAATGAATGGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTA----AGAATCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGC-AAAAAT---A---TGTAAAAAAAATATATGTTACATA---TGCA---TACAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TCAGAT---T-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGAT-------------GGG----GT-------G-G--------GG--T-----------TAT-----AAATAGCTACTAT-T-AA-ACCG---GAAG-ATGGGTCC-----TCCAGACT---TATAATTACTTGTCTAAT-CCAGTGACTTAATAAATTGTTTATTTGTCTCTGCCTAAACCAA-----ATAGGTCAATGGGCTTTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACAAG--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----ATG------------------------CAA--------ACTAG--------------TTTTCAAActgtgtctatgtctctg
gi|6 : CCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATTTTATTTGAAAATTAAGAAAAC------GATTTT--TTTTTATT---CATATCATTTTGCTACC--GACGAGTAATGAATGGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTA----AGAATCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAATATATGTTAAATA---TGCA---TACAATAA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGA----T-TTTGTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGAT-------G-----GGG----AT-------G-G--------GA--T-----------TAT-----AAGTAGCTACTAT-T-AA----------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACACGAG--AACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|7 : GAATAGTAGGTGGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTG----GGAATCAAGATTCAAAAA-------CACTAACAATCAATCAAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAAT-A-TC---TCTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTGCCTTGTAT---T-GTTTTTT--CAATATG---GCCGACGA---CGCTATAATCAAATCACGTGACTC-----TCGGGATTTCTC--A-----GGG----AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCACTAT----A-G-TG---GAAGAACAGG-CT-----TCCAGCCT---g
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacagcggaaaaatgtttttgcaagttcaataatcaactgttaaaGAGTAATGAATGGGG-AAAGG-G-TTGATTTCA-TCATTT-TAAATATTTTTA----AGAATCAGTATACAAAAA-------TACTCGTAATC----TTGTATACT-----GAGAAA--TATAGCAAAAAAA---AAAATGT-AAAAAAGTATATGTTAAATA---TGTA---TACAATGA-TT---TTT--TTTT-T-ATA--------TAAG--TTTA---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGAT-------G-----GGG----GTGAGGGAAGGG--------GG--T-----------TAT-----AAATAGCTACTAT-TAAA-G-CG---GAAG-ATGGGTCC-----TCCTGATT---TATAATTACTTACCTAAA-CCAGTGACTTATTTGATTGTT--TATGTCTCTGCCTAAACCAA-----AAAGGACAATGTGCTCTAACATTTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA------A------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTcggtgtctatgtctctgt
gi|9 : GTTCACTTCCAGTGCATTTTTCAAAATATGTTTCT-TGCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAA--AAAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCATTGAATATAAAACCA---TCATT-----ATTCA---------------------------T---GATACCATTTTGCTACA--GACGAGTAATGAATGGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTA----AGAATCAGTATACAAAAA-------TACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGTAAAAAAAGTATATGTTGAATA---TGCA---AACAATGA-AT---TGT--TTTT-T-AAA---------A----------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAAAG-----ATTGGAT-------G-----G
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT
Alignments
lowQualScore : 111 111 11 111 3333333 1111 1 1111111 111111 111 222222222 111111111 1 111 1111111 55555555555555555555555555555555555555555555555555555555555555555 2222 111 11111 444444444444 111111 1 1111111 444444444444444444444444 22222222 33333333333333
lowQualScore : 111 777 33 0 777 3 2 2 3 3 5555555 5 5 4444 66 888 66 3 3 5 3 3 3 2 77777 0 0 0000000 0 2 444444 44 2 33 555 555 888 3 1 000 555 2 3 555 4444 3 3 444444444 77 000000000 3 5 444 33 1 33 666 55 0000000 44444444444444444444444444444444444444444444444444444444444444444 5555 33 444 4 7 88888 1 555 88 0 66666 444444444444 222222 2 4444444 9999 222222222222222222222222 00000000 33333333333333
lowQualScore : ... ... .. . ... . . . . . ....... . . .... .. ... .. . . . . . . . ..... . . ....... . . ...... .. . .. ... ... ... . . ... ... . . ... .... . . ......... .. ......... . . ... .. . .. ... .. ....... ................................................................. .... .. ... . . ..... . ... .. . ..... ............ ...... . ....... .... ........................ ........ ..............
lowQualScore : 000 555 88 2 000 5 5 5 2 0 9999999 1 0 1111 99 888 99 1 1 4 1 1 1 4 88888 5 8 0000000 8 6 888888 22 5 88 444 444 222 7 2 888 444 8 1 444 6666 1 1 888888888 99 777777777 3 0 777 33 7 77 666 11 3333333 11111111111111111111111111111111111111111111111111111111111111111 3333 22 000 5 3 33333 0 888 66 5 77777 222222222222 888888 8 4444444 4444 888888888888888888888888 77777777 66666666666666
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( family-354 ) : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|1 : GAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTG----GGAATCAAGATTCCAA-------AACACTAACAATCAATCTAATACACTTAATAAAGAAAATTATG----AAAATTTAA---T-T-AAAAAA---------AAAAA---TACT---TAAAAT---TTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TGCCTTGTAT---T-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------CATTTTAAAAATAGCCACTAT----AG-CCGAAGA--ACAGG-CT-----TCCAGTCT---
gi|10 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacagctgttaaaTTAAATA---TGCA---TATAATGA-TT---TGT--TTTT-TTAAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGAT-----GAAAGTGGG-------GT-------GGGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCAGCCT---TATAATTGCTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAAAGAGGACAGGACAACGAACTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAA----------AACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----ATA------------------------TActgtgtctatgtctctgg
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAAAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGAtaaa
gi|11 : TATTTGAAAATTTACA-------------TTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACAAGTAATGAAT-GAG-------------ATTTCA-TCATTTATAAATATTTTTA----AGATTCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAACAT---A---TGT-AAAAAGGTATATGTTAAATA---TGCA---TATAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Aatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|12 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaCTTGATTAATTGTTTGTATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAAC--GACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|13 : -T---TCT--ATTCAC---ACTAATTTACAACCATGCCGAATGATGCAC-GGGGTAC-AT-G-TCTATTTCA-ACATTTATAATTAGTCTTGCTGGAGAATCAGTATTCAAA-------A-----------CACTCT----------------AAA--TA----AAAAGAT---A-------AAACAACTATATGTGAAATA---TACG---C-CAACTACTT---TAC--TCTT-T-CAA---------AAA--CAT-----------GT-TTAGATAAAT-TTT--TT--TAAA-----------------CG--ATAATTGGATCACGTGATTC-----TTGGAGT-----G-----CAT-------GT-------GTT--------CG--T-----------TAT-----GAATAGCTACTAT-A-TAG-CGGAAGA--ACGGgatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|14 : aaaaaaggAAAGAACAAACATTTTAGTTTATAGAAACACAC------------ATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATATA------------------------TAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTactgcgagtctcactgaaagttatgatgtaactgtatgtac
gi|18 : ttgcaatagaacAATGGAC-GATG-AA-CGTG-TTGATTTTA-TGATTT-------TTCTTG----AGA-TAAGAATCCAAA-------AACACTGGAAATCAATCTGGTGTACT-------GAAA--TA----AAGAAAC---A---TTT--AAAACTTATATGCGAAGTA---AGCCCTTTAC---GA-CT---TTT--TTAT-C-AAA--------AATA--TATC----------GT-TCA------------------AAAATG---GCTGACAATGAT-------TTG-ATCACGTGACTT------TAGgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
gi|19 : tgaaaaatacaaTGAAAATTTACAAAATGAAAAACAATTT-TTTTTTT--ATTCAT---TTCATTTTGCTACC--GACGAGTAATGAATGGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAAAATTT--------------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACT-----AAGAAA--TATAGCAAAATAT---A---TG
gi|2 : GATTCACTGCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---------TTCAT---ATCATTTTGCTACT--GATGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTA----AGAATCAGTATACAAA-------AATACTTGTAATCAATCTTGTATACT-----GAG-AA--TATAGCAAAAAAT---A---TGT-GAAAAAGTATATATTAAATA---AGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGAT-----G-----AGG-------GT-------G-G--------GA--T-----------TAT-----AAATAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAT-CCAGTGACTTAATAAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TTTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAG--AACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|20 : a--TATC---------TGCCTTGTAT---TGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGATTTCTCG-----GGG-------AT-------GTA--------CA--T-----------TATTTTAAAAATAGCCACTAT----AG-CGGAAGA--AC-AATCT-----TCCAGTCT---
gi|21 : catagacaATC---------TGCCTTGCAT---T-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCTC-----G-----GGGATGT---AT-------GTA--------TG--T-----------TAA-----AAATAGCCACTAT----AG-CAAAAGA--ACAGG-CT-----TCCAGTCT---ctgtgtctatgtctctgc
gi|23 : gacatagacgATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------ctgtgtctatgtctc
gi|24 : ATAGATACAGT-T-AAA-CAACAGAGGACTAGTACACATTTTCAGATTCTCTACAATTA-TTGTATAAATCCAGTGCCTTAATTAATTGTTTATATGTCTCT-CATAAATCt
gi|27 : CCTAA--TCAGTGACTTAA----TTGTTTATATGTCTCTGCCCTAACC
gi|3 : GAAAATTTACAAAACGAAAAACAATTT-T---TTTTTATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TTATTTATAAATATTT--------------GTATACAAA-------AATACTCGTAATCGATCTTGTATACT-----AAGAAA--TATAGCAAATTAT---A---CGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TAT--TTTT-T-AAA--------TTAG--TATC---------TGT-TTATAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGAT-----G-----GGGTGGGGGGGT-------GTG--------GG--TGGGGGTGAAGGTAT-----ATATAGCTACTATAA-AAG-CGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAAT
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTG----GGAATCAAGATTCAAA-------AAAAATAACAATCAATCTAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAATTC-TC---TAT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCCTTGTAT---T-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGATTTCTCG-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCATTAT----AG-CGGAAGA--ACAGG-CT-----TCCGGTTT---gatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaactgttaaaGGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAA-------AATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGTATTTGAAAATTTACAAAA-------CGATTTAT---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGC-AAAAAT---A---TGTAAAAAAAATATATGTTACATA---TGCA---TACAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TCAGAT---T-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGAT-----------GGG-------GT-------G-G--------GG--T-----------TAT-----AAATAGCTACTAT-T-AAACCGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGTCTAAT-CCAGTGACTTAATAAATTGTTTATTTGTCTCTGCCTAAACCAA-----ATAGGTCAATGGGCTTTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACAAG--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----ATG------------------------CAA--------ACTAG--------------TTTTCAAActgtgtctatgtctctg
gi|6 : CCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATTTTATTTGAAAATTAAGAAAAC------GATTTT-TT--TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAATATATGTTAAATA---TGCA---TACAATAA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGA----T-TTTGTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGAT-----G-----GGG-------AT-------G-G--------GA--T-----------TAT-----AAGTAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACACGAG--AACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|7 : GAATAGTAGGT-GGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTG----GGAATCAAGATTCAAA-------AACACTAACAATCAATCAAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAAT-A-TC---TCTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTGCCTTGTAT---T-GTTTTTT--CAATATG---GCCGACGA---CGCTATAATCAAATCACGTGACTC-----TCGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCACTAT----AG-TGGAAGA--ACAGG-CT-----TCCAGCCT---g
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacagcggaaaaatgtttttgcaagttcaataatcaactgttaaaGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TCATTT-TAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATC----TTGTATACT-----GAGAAA--TATAGCAAAAAAA---AAAATGT-AAAAAAGTATATGTTAAATA---TGTA---TACAATGA-TT---TTT--TTTT-T-ATA--------TAAG--TTTA---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGAT-----G-----GGG-------GTGAGGGAAGGG--------GG--T-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCTGATT---TATAATTACTTACCTAAA-CCAGTGACTTATTTGATTGTT--TATGTCTCTGCCTAAACCAA-----AAAGGACAATGTGCTCTAACATTTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA------A------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTcggtgtctatgtctctgt
gi|9 : GTTCACTTCCAGTGCATTTTTCAAAATATGTTTCT-TGCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAA--AAAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCATTGAATATA--------------------------AAAC------CA---T-C---ATT--ATTCATGATACCATTTTGCTACA--GACGAGTAATGAAT-GGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGTAAAAAAAGTATATGTTGAATA---TGCA---AACAATGA-AT---TGT--TTTT-T-AAA---------A----------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAAAG-----ATTGGAT-----G-----G
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT
Alignments
lowQualScore : 111 111 11 111 3333333 1111 1 1111111 111111 111 222222222 111111111 1 111 1111111 55555555555555555555555555555555555555555555555555555555555555555 2222 111 11111 444444444444 111111 1 1111111 444444444444444444444444 22222222 33333333333333
lowQualScore : 111 777 33 0 777 3 2 2 3 3 5555555 5 5 4444 66 888 66 3 3 5 3 3 3 2 77777 0 0 0000000 0 2 444444 44 2 33 555 555 888 3 1 000 555 2 3 555 4444 3 3 444444444 77 000000000 3 5 444 33 1 33 666 55 0000000 44444444444444444444444444444444444444444444444444444444444444444 5555 33 444 4 7 88888 1 555 88 0 66666 444444444444 222222 2 4444444 9999 222222222222222222222222 00000000 33333333333333
lowQualScore : ... ... .. . ... . . . . . ....... . . .... .. ... .. . . . . . . . ..... . . ....... . . ...... .. . .. ... ... ... . . ... ... . . ... .... . . ......... .. ......... . . ... .. . .. ... .. ....... ................................................................. .... .. ... . . ..... . ... .. . ..... ............ ...... . ....... .... ........................ ........ ..............
lowQualScore : 000 555 88 2 000 5 5 5 2 0 9999999 1 0 1111 99 888 99 1 1 4 1 1 1 4 88888 5 8 0000000 8 6 888888 22 5 88 444 444 222 7 2 888 444 8 1 444 6666 1 1 888888888 99 777777777 3 0 777 33 7 77 666 11 3333333 11111111111111111111111111111111111111111111111111111111111111111 3333 22 000 5 3 33333 0 888 66 5 77777 222222222222 888888 8 4444444 4444 888888888888888888888888 77777777 66666666666666
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( family-354 ) : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|1 : GAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTG----GGAATCAAGATTCCAA-------AACACTAACAATCAATCTAATACACTTAATAAAGAAAATTATG----AAAATTTAA---T-T-AAAAAA---------AAAAA---TACT---TAAAAT---TTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TGCCTTGTAT---T-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------CATTTTAAAAATAGCCACTAT----AG-CCGAAGA--ACAGG-CT-----TCCAGTCT---
gi|10 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacagctgttaaaTTAAATA---TGCA---TATAATGA-TT---TGT--TTTT-TTAAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGAT-----GAAAGTGGG-------GT-------GGGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCAGCCT---TATAATTGCTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAAAGAGGACAGGACAACGAACTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAA----------AACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----ATA------------------------TActgtgtctatgtctctgg
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAAAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGAtaaa
gi|11 : TATTTGAAAATTTACA-------------TTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACAAGTAATGAAT-GAG-------------ATTTCA-TCATTTATAAATATTTTTA----AGATTCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAACAT---A---TGT-AAAAAGGTATATGTTAAATA---TGCA---TATAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Aatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|12 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaCTTGATTAATTGTTTGTATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAAC--GACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|13 : -T---TCT--ATTCAC---ACTAATTTACAACCATGCCGAATGATGCAC-GGGGTAC-AT-G-TCTATTTCA-ACATTTATAATTAGTCTTGCTGGAGAATCAGTATTCAAA-------A-----------CACTCT----------------AAA--TA----AAAAGAT---A-------AAACAACTATATGTGAAATA---TACG---C-CAACTACTT---TAC--TCTT-T-CAA---------AAA--CAT-----------GT-TTAGATAAAT-TTT--TT--TAAA-----------------CG--ATAATTGGATCACGTGATTC-----TTGGAGT-----G-----CAT-------GT-------GTT--------CG--T-----------TAT-----GAATAGCTACTAT-A-TAG-CGGAAGA--ACGGgatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|14 : aaaaaaggAAAGAACAAACATTTTAGTTTATAGAAACACAC------------ATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATATA------------------------TAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTactgcgagtctcactgaaagttatgatgtaactgtatgtac
gi|18 : ttgcaatagaacAATGGAC-GATG-AA-CGTG-TTGATTTTA-TGATTT-------TTCTTG----AGA-TAAGAATCCAAA-------AACACTGGAAATCAATCTGGTGTACT-------GAAA--TA----AAGAAAC---A---TTT--AAAACTTATATGCGAAGTA---AGCCCTTTAC---GA-CT---TTT--TTAT-C-AAA--------AATA--TATC----------GT-TCA------------------AAAATG---GCTGACAATGAT-------TTG-ATCACGTGACTT------TAGgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
gi|19 : tgaaaaatacaaTGAAAATTTACAAAATGAAAAACAATTT-TTTTTTT--ATTCAT---TTCATTTTGCTACC--GACGAGTAATGAATGGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAAAATTT--------------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACT-----AAGAAA--TATAGCAAAATAT---A---TG
gi|2 : GATTCACTGCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---------TTCAT---ATCATTTTGCTACT--GATGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTA----AGAATCAGTATACAAA-------AATACTTGTAATCAATCTTGTATACT-----GAG-AA--TATAGCAAAAAAT---A---TGT-GAAAAAGTATATATTAAATA---AGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGAT-----G-----AGG-------GT-------G-G--------GA--T-----------TAT-----AAATAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAT-CCAGTGACTTAATAAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TTTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAG--AACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|20 : a--TATC---------TGCCTTGTAT---TGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGATTTCTCG-----GGG-------AT-------GTA--------CA--T-----------TATTTTAAAAATAGCCACTAT----AG-CGGAAGA--AC-AATCT-----TCCAGTCT---
gi|21 : catagacaATC---------TGCCTTGCAT---T-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCTC-----G-----GGGATGT---AT-------GTA--------TG--T-----------TAA-----AAATAGCCACTAT----AG-CAAAAGA--ACAGG-CT-----TCCAGTCT---ctgtgtctatgtctctgc
gi|23 : gacatagacgATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------ctgtgtctatgtctc
gi|24 : ATAGATACAGT-T-AAA-CAACAGAGGACTAGTACACATTTTCAGATTCTCTACAATTA-TTGTATAAATCCAGTGCCTTAATTAATTGTTTATATGTCTCT-CATAAATCt
gi|27 : CCTAA--TCAGTGACTTAA----TTGTTTATATGTCTCTGCCCTAACC
gi|3 : GAAAATTTACAAAACGAAAAACAATTT-T---TTTTTATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TTATTTATAAATATTT--------------GTATACAAA-------AATACTCGTAATCGATCTTGTATACT-----AAGAAA--TATAGCAAATTAT---A---CGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TAT--TTTT-T-AAA--------TTAG--TATC---------TGT-TTATAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGAT-----G-----GGGTGGGGGGGT-------GTG--------GG--TGGGGGTGAAGGTAT-----ATATAGCTACTATAA-AAG-CGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAAT
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAAC------------ACACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTG----GGAATCAAGATTCAAA-------AAAAATAACAATCAATCTAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAATTC-TC---TAT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCCTTGTAT---T-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGATTTCTCG-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCATTAT----AG-CGGAAGA--ACAGG-CT-----TCCGGTTT---gatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaactgttaaaGGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAA-------AATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGTATTTGAAAATTTACAAAA-------CGATTTAT---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGC-AAAAAT---A---TGTAAAAAAAATATATGTTACATA---TGCA---TACAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TCAGAT---T-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGAT-----------GGG-------GT-------G-G--------GG--T-----------TAT-----AAATAGCTACTAT-T-AAACCGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGTCTAAT-CCAGTGACTTAATAAATTGTTTATTTGTCTCTGCCTAAACCAA-----ATAGGTCAATGGGCTTTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACAAG--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----ATG------------------------CAA--------ACTAG--------------TTTTCAAActgtgtctatgtctctg
gi|6 : CCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATTTTATTTGAAAATTAAGAAAAC------GATTTT-TT--TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAATATATGTTAAATA---TGCA---TACAATAA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGA----T-TTTGTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGAT-----G-----GGG-------AT-------G-G--------GA--T-----------TAT-----AAGTAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACACGAG--AACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|7 : GAATAGTAGGT-GGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTG----GGAATCAAGATTCAAA-------AACACTAACAATCAATCAAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAATATA-ATTAAAAAAAATACT---TAAAAT-A-TC---TCTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTGCCTTGTAT---T-GTTTTTT--CAATATG---GCCGACGA---CGCTATAATCAAATCACGTGACTC-----TCGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCACTAT----AG-TGGAAGA--ACAGG-CT-----TCCAGCCT---g
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacagcggaaaaatgtttttgcaagttcaataatcaactgttaaaGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TCATTT-TAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATC----TTGTATACT-----GAGAAA--TATAGCAAAAAAA---AAAATGT-AAAAAAGTATATGTTAAATA---TGTA---TACAATGA-TT---TTT--TTTT-T-ATA--------TAAG--TTTA---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGAT-----G-----GGG-------GTGAGGGAAGGG--------GG--T-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCTGATT---TATAATTACTTACCTAAA-CCAGTGACTTATTTGATTGTT--TATGTCTCTGCCTAAACCAA-----AAAGGACAATGTGCTCTAACATTTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA------A------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTcggtgtctatgtctctgt
gi|9 : GTTCACTTCCAGTGCATTTTTCAAAATATGTTTCT-TGCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAA--AAAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCATTGAATATA--------------------------AAAC------CA---T-C---ATT--ATTCATGATACCATTTTGCTACA--GACGAGTAATGAAT-GGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGTAAAAAAAGTATATGTTGAATA---TGCA---AACAATGA-AT---TGT--TTTT-T-AAA---------A----------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAAAG-----ATTGGAT-----G-----G
blockSeqs : CT GGT TT A T C C A G TGAAAAA A A TTTT TT GAT AT G T A T A A A GCTGG AAATTTT T G . T CA . AAA TAA G T AAA CTT G C . CTAA . T AAAAACATC AC AAGACGATC C G AAA GT G TT ATT TT CTCGAGA GGGGTGGGGGGGTGTGGGTGGGGGTGAAGGTAT TAA AC AGG G T ACATT C CTC AT . AAACGACAAC GTATAT T CTTGTTT TTAT TATAAAACTTGTGACTAGTGGCAA AACTTAAG CGGCGACCAACAAG
blockSeqs : T . . A T C C A T CGAAAAA A . TT . . . . . T . . . T A . G A . T CA . . TAA C T AAA . G . . GT . . T . . C G . T G . ATT TT TA GAAAGTGGGGTGGGGGAGGGGGCGGCTTAT AAA G A G T . A . T . ACACGAGAAC . T . . . . .
blockSeqs : T . . . . . . . . C A . T . . . . . T . . . A G . T G . T CA . . TA T T . . T . . AC . . T . . C G . T G . ATT TG TA TTCTCGGGGATGTACATTATTTTAA TAA G A A T . T . A . ACACAAGAAC . T . . . . .
blockSeqs : C A . T . . . . . A . . . A A . T A . T CA . . TG G T . . G . . TT . . A . . C G . T T . ATT TG CT TTCTCGGGGATGTACGTTATTTTAA AT G A T T . T . T . ACACGAGAAC . T . . . . .
blockSeqs : C T . T . . . . . . . . . A G . T G . A CA . . TA G T . . G . . GT . . T . . . T . T G . ATT TC TA TTCTCAGGGATGTACGTTATTTTAA TA G A G T . A . A . ACAC . T . . . . .
blockSeqs : . . . A . . . . . . . . . T A . A G . T CA . . TA A T . . G . . AT . . T . . . C . G G . ATT CG CT GGGGGTGAGGGAAGGGGGTTAT TA A A A T . A . A ACAA . . . . . . .
blockSeqs : . . . . . . . . . . . C A . T G . T CA . . TA A T . . T . . AT . . T . . . T . T T . ATT CG TA GGGGATGTATGTATGTTAA TA G . G T . T . . . . . . . .
blockSeqs : . . . . . . A G . T G . A A . . A A T . . G . . GT . . T . . . T . G G . ATT TT TA GCATGTGTTCGTTAT TA G . A T . A . . . . . . .
blockSeqs : . . . . . . C A . A . . T A . . T A T . . A . . TT . . A . . . G . T G . . CG TA GAGGGTGGGATTAT . G . G . . A .
blockSeqs : . . . . . . A A . T . . T C . . . G . . . G . . GT . . T . . . G . T T . . TT CT GGGGATGGGATTAT . G . . . . C .
blockSeqs : . . . . . . A . . T . . . . . . . G . . . G . . G . . . . . . T . G G . . CA TA GGGGTGGGGTTAT . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . . . . . G . T G . . TT GA . . . .
blockSeqs : . . . . . . . . . TG T
blockSeqs : . . . . . . . . T .
blockSeqCons : CGAAAAA G***** ** CA *** *** T******** ** ATT TA** A** ***** ACACAAAC****
originalCons : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
finalCons : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAACGAAAAACAATTT-T---TTT--ATTCAT---ATCATTTTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACTG-----AGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAGTATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAAT--------AAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTATTA--AG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACAAAC----ACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT
Alignments
lowQualScore : 111 111 11 11 111 555555555 1111111 1 1111111 111111 111 222222222 111111111 1 111 1111111 55555555555555555555555555555555555555555555555555555555555555555 2222 111 11111 444444444 111111 1 1111111 444444444444444444444444 22222222 33333333333333
lowQualScore : 111 777 33 0 33 4444 2 2 444 0 3 3 333333333 4 777 0000000 777 66 66 3 3 5 3 3 3 2 77777 0 0 0000000 0 2 444444 44 2 3 555 555 444 77 1 000 555 2 3 555 0 44 444 444444444 77 000000000 3 5 444 33 1 33 666 55 0000000 44444444444444444444444444444444444444444444444444444444444444444 5555 33 444 4 7 88888 1 555 88 0 66666 555555555 222222 2 4444444 9999 222222222222222222222222 00000000 33333333333333
lowQualScore : ... ... .. . .. .... . . ... . . . ......... . ... ....... ... .. .. . . . . . . . ..... . . ....... . . ...... .. . . ... ... ... .. . ... ... . . ... . .. ... ......... .. ......... . . ... .. . .. ... .. ....... ................................................................. .... .. ... . . ..... . ... .. . ..... ......... ...... . ....... .... ........................ ........ ..............
lowQualScore : 000 555 88 2 88 5555 5 5 888 8 5 0 000000000 4 888 9999999 888 11 11 1 1 4 1 1 1 4 88888 5 8 0000000 8 6 888888 22 5 5 444 444 888 00 2 888 444 8 1 444 7 22 444 888888888 99 777777777 3 0 777 33 7 77 666 11 3333333 44444444444444444444444444444444444444444444444444444444444444444 3333 22 000 5 3 33333 0 888 66 5 77777 333333333 888888 8 4444444 4444 888888888888888888888888 77777777 66666666666666
consensus : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAACGA--AACAATTT-T---TTT--A----TTCAT---ATCATT--TTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAG-TATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--G--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
Reference ( family-354 ) : NGGTTCACTTCCAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTGCGCATTGAATATAAAACCAATTTTATTTGAAAATTTACAAAACGAAAAACAATTT-T---TTT--A----TTCAT---ATCATT--TTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATATTTTTG----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAG-TATATGTTAAATA---TGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACGCTATAATCGAATCACGTGATTT-----ATAGGAT-----G-----GGG-------GT-------GTG--------CG--T-----------TAT-----AAATAGCTACTAT-T-AAG-CGGAAGA--ACGGGTCC-----TCCAGNCT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--A--AACACACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|1 : GAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-ACACTTATGACTTTTCTTG----GGAATCAAGATTCCAA-------AACACTAACAATCAATCTAATACACTTAATAAAGAAAATTATG----AAAATTTAA---T-T-AAAAAA----------AAAAA---TACT---TAAAAT---TTCTCTAT--TTTTCT-AAAAAACAT--CAAGACGATC---------TGCCTTGTAT---T-GTTTTTT--CAATATG---GCCAATGATGACGCTATAATCGAATCATGTGACTC-----TTGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------CATTTTAAAAATAGCCACTAT----AG-CCGAAGA--ACAGG-CT-----TCCAGTCT---
gi|10 : atatatatttatatatatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgtgtaacggaacaggattagttcagtcagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataactcattaacacctattgttctcaatcacatgactgtgatctccgccatatttgatctgttttcctggccatttaataaattgttgatttattagggaaacagacgagatgggcacctgcaactgtgtaaacaatgatattggattacgtggcaacagctttccgcagttttctactaagattataattatactgttgtggtatataaacagaatatattgatgaacaggtttgatactgttttattgttattattgataatgaaaaaataataaaaaaaaacataacagcggaaaaatgtttaatgaacagctgttaaaTTAAATA---TGCA---TATAATGA-TT---TGT--TTTT-TTAAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGATAACGCTATAATTTAATTACGTGATTT-----ATAAGAT-----GAAAGTGGG-------GT-------GGGGGAGGGGGCGGCT-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCAGCCT---TATAATTGCTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAAAGAGGACAGGACAACGAACTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGA--------A--AACACACA--GCAATGTTGTGTCTATCAAATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC--TTTTTA-------TA----ATA------------------------TActgtgtctatgtctctgg
gi|11 : GATTCACTTCCAGTGCATTTTTCAAAATAAGTTT-TTTGCATCTG---TGTAAA--ACAAAAATAACATAACAATAAAGGGAAAACAAAAAAATGTCAGAAGTCAACTTCCAAGTTCCAGCGCAGAGAtaaa
gi|11 : TATTTGAAAATTTACA-------------TTT-T---TTT--A----TTCAT---ATCATT--TTGCTACC--GACAAGTAATGAAT-GAG-------------ATTTCA-TCATTTATAAATATTTTTA----AGATTCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAACAT---A---TGT-AAAAAGG-TATATGTTAAATA---TGCA---TATAATGA-TT---TG---TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--TAAAATGATTGCCGACGACGACGTTATAGTTTAATTACATAATTT-----Aatatttgaaaatttacatttttttattcatatcattttgctaccgacaagtaatgaatgagatttcatcatttataaatatttttaagattcagtatacaaaaatactcgtaatcaatcttgtatactgagaaatatagcaaaacatatgtaaaaaggtatatgttaaatatgcatataatgatttgtttttaaataagtatctgtttagatttttgttttaaaatgattgccgacgacgacgttatagtttaattacataattta
gi|12 : gattcacttccagtgcatttttcaaaataagttttttgcatctgtgtaaaacaaaaataacataacaataaagggaaaacaaaaaaatgtcagaagtcaacttccaagttccagcgcagagaaCTTGATTAATTGTTTGTATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTTAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACAAAC--GACAACACACACGGCAGTTTTGTGTATATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAAC-TGTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|13 : -T---TCT--A----TTCAC---ACTAAT--TTACAACCATGCCGAATGATGCAC-GGGGTAC-AT-G-TCTATTTCA-ACATTTATAATTAGTCTTGCTGGAGAATCAGTATTCAAA-------A-----------CACTCT----------------AAA--TA----AAAAGAT---A-------AAACAAC-TATATGTGAAATA---TACG---C-CAACTACTT---TAC--TCTT-T-CAA---------AAA--CAT-----------GT-TTAGATAAAT-TTT--TT--TAAA-----------------CG--ATAATTGGATCACGTGATTC-----TTGGAGT-----G-----CAT-------GT-------GTT--------CG--T-----------TAT-----GAATAGCTACTAT-A-TAG-CGGAAGA--ACGGgatatcagtaaaaaaaagtcttaagaaagtgttatttgataatttttttctatcataaattgttgaaaatggaatagttgtt
gi|14 : aaaaaaggAAAGAACAAACATTTTAGTTTATAG----------A--AACACACATGGCAACGTTGTGTCTATCATATTGGTCATGTATTAGTATATGTATCTCTAATTGAAGCTTTAACTTTTTTTACTTGTTTTATTATATA------------------------TAAAACTTAAGACTAGCGGCGACCAACAAGTTTTCAAAATATCAGCAG--ATATAAACTATTACGTCACTactgcgagtctcactgaaagttatgatgtaactgtatgtac
gi|18 : ttgcaatagaacAATGGAC-GATG-AA-CGTG-TTGATTTTA-TGATTT-------TTCTTG----AGA-TAAGAATCCAAA-------AACACTGGAAATCAATCTGGTGTACT-------GAAA--TA----AAGAAAC---A---TTT--AAAACT-TATATGCGAAGTA---AGCCCTTTAC---GA-CT---TTT--TTAT-C-AAA--------AATA--TATC----------GT-TCA------------------AAAATG---GCTGACAATGAT-------TTG-ATCACGTGACTT------TAGgatatcagtaaaaaaaaaaagtcttaagaaaatgttatttgatgattttttttctatcataaattgttggaaatggaatagttgtt
gi|19 : tgaaaaatacaaTGAAAATTTACAAAATGAAAAACAATTT-TTTTTTT--A----TTCAT---TTCATT--TTGCTACC--GACGAGTAATGAATGGGGG-AA-GG-G-TTGATTTCA-TCATTTATAAAAATTT--------------GTATACAAAAAATTTTAATACTCGTAATCAATCTTGTATACT-----AAGAAA--TATAGCAAAATAT---A---TG
gi|2 : GATTCACTGCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTG---TGTAAA--ACAAGTATAACATAATAATAACGGGAAA--AAAATAATGTCAGAAGTCAACTTCCAAGATCCAGCACACAGATCATAATATAATGGTACGGATCCATGCATTGCGCATTGAATATTAAACCAATTTTATTTGAAAATTTACAAAAC------CAATTT-T-------------TTCAT---ATCATT--TTGCTACT--GATGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAAATAATTTTA----AGAATCAGTATACAAA-------AATACTTGTAATCAATCTTGTATACT-----GAG-AA--TATAGCAAAAAAT---A---TGT-GAAAAAG-TATATATTAAATA---AGCA---TACAATGA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGACGACAACGCTATAATTCAATTACGTAATTT-----ATAGGAT-----G-----AGG-------GT-------G-G--------GA--T-----------TAT-----AAATAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAT-CCAGTGACTTAATAAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTC-----TTTCAATATCGCAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACACGAG--AACACACACGGCAATGTTGTGTCTATCATATTGATCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAG--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|20 : a--TATC---------TGCCTTGTAT---TGTTTTTTT--CAATATG---GCCGACAATGAAGCTATAATCGAATCACGTGATTC-----TCGGGATTTCTCG-----GGG-------AT-------GTA--------CA--T-----------TATTTTAAAAATAGCCACTAT----AG-CGGAAGA--AC-AATCT-----TCCAGTCT---
gi|21 : catagacaATC---------TGCCTTGCAT---T-GTTGTTTTTCAATATG---GCCGACGATGACGCTATAATCGAATCACGTGACTCTCGAGATAGCTC-----G-----GGGATGT---AT-------GTA--------TG--T-----------TAA-----AAATAGCCACTAT----AG-CAAAAGA--ACAGG-CT-----TCCAGTCT---ctgtgtctatgtctctgc
gi|23 : gacatagacgATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACA------------CACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------ctgtgtctatgtctc
gi|24 : ATAGATACAGT-T-AAA-CAACAGAGGACTAGTACACATTTTCAGATTCTCTACAATTA-TTGTATAAATCCAGTGCCTTAATTAATTGTTTATATGTCTCT-CATAAATCt
gi|27 : CCTAA--TCAGTGACTTAA----TTGTTTATATGTCTCTGCCCTAACC
gi|3 : GAAAATTTACAAAACGAAAAACAATTT-T---TTTTTA----TTCAT---ATCATT--TTGCTACC--GACGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TTATTTATAAATATTT--------------GTATACAAA-------AATACTCGTAATCGATCTTGTATACT-----AAGAAA--TATAGCAAATTAT---A---CGT-AAAAAAG-TATATGTTAAATA---TGCA---TACAATGA-TT---TAT--TTTT-T-AAA--------TTAG--TATC---------TGT-TTATAT---T-TTTGTTT--CAAAATGATTGCCGACGATGACTTTATAATTTAATTACGTGTTTT-----ATAGGAT-----G-----GGGTGGGGGGGT-------GTG--------GG--TGGGGGTGAAGGTAT-----ATATAGCTACTATAA-AAG-CGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAAT
gi|3 : CAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACA------------CACACGGCAATGTTGTGTCTATCATATTGGTCATGCATTA------GTATCTCTAACTGAAGCTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAA--------------TTTTCAAAATATCAGCAGACATATAAACTATAAAGTCACTatcgaaatgtcaaaagaacaaacattttagtttataggaacacacacggcaatgttgtgtctatcatattggtcatgcattagtatctctaactgaagctttaactttttttataatacaaactaattttcaaaatatcagcagacatataaactataaagtcactgatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : gaaaatttacaaaacgaaaaacaatttttttttattcatatcattttgctaccgacgagtaatgaatggggaaagggttgatttcattatttataaatatttgtatacaaaaatactcgtaatcgatcttgtatactaagaaatatagcaaattatacgtaaaaaagtatatgttaaatatgcatacaatgatttattttttaaattagtatctgtttatatttttgtttcaaaatgattgccgacgatgactttataatttaattacgtgttttataggatggggtgggggggtgtgggtgggggtgaaggtatatatagctactataaaagcggaagatgggtcctccagacttataattacttgcctaaacGAATAGTGGGT-GGGG-AATGG-G-TTGATTTCA-GCACTTATGATTTTTCTTG----GGAATCAAGATTCAAA-------AAAAATAACAATCAATCTAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAA-TATA-ATTAAAAAAAATACT---TAAAATTC-TC---TAT--TTTT-C-AAAAAAAACATCAAGACGATC---------TGCCTTGTAT---T-GGTTTTT--CACTATG---GCCGACGATGACGCTATAATCGAATCACGTGACT-------CGGGATTTCTCG-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCATTAT----AG-CGGAAGA--ACAGG-CT-----TCCGGTTT---gatatcattaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : aatggctggaatggtaccgtattcttatgcaatggatcaactcaaatcagtaacttcagacagagacatagacgcagagactcgcaggtgcaggtgcttctcgcgataacttgtaaacacctattgttctcaatcacgtgaccgtaatctccgccatatttgatctggtttcctgaccgtttaataaattgttaatttatcgatttattagggaacctgatgacgcacgcacctgcaactgtgtaaacaataatattggtttacgtggcgacggctttccgcagttttctacttataattatattgttgtgttatataaacagaatatattgatgaacgggttttgatactgttttattgttattattaataatgaaaaaataataaaaaaaacataacagcgaaaaaatgtttttgcaagtttaatgaacaactgttaaaGGTTCACTTCTAGTGCATTTTTCAAAATATGTTT-T-TGCATCTGGGTTATAAGTTACAAGTATAACATAATAATAACGGGAAA--AA-----TGTCAGAAGTCAACTTCCAAGTTCCAGCGCACATACCAATATATAACTGTACGAATCCATGCATTGCGCATTGAACATAAAACCAATTGTATTTGAAAATTTACAAAACGA-------TTTAT---TTT--A----TTCAT---ATCATT--TTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCATTTATAACTATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAA-T---A---TGT-AAAAAAAATATATGTTACATA---TGCA---TACAATGA-TT---TGT--TTTT---AAA--------TAAG--TATC---------TGT-TCAGAT---T-TTTGTTT--TAAAATAATTGCCGACGATGACGCTATAATT-AATTACGTAATTT-----ATAGGAT-----G-----GGG--------T-------GGG---------G--T-----------TAT-----AAATAGCTACTAT-T-AAACCGGAAG---ATGGGTCC-----TCCAGACT---TATAATTACTTGTCTAAT-CCAGTGACTTAATAAATTGTTTATTTGTCTCTGCCTAAACCAA-----ATAGGTCAATGGGCTTTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTTATAGGAACACAC--AAGAACACACACGGCAATGTTGTGTCTATCATATTGGTCATATATTG------GTATCTCTAATTGAAGCTTTAAC-TTTTTTA-------TA----ATG------------------------CAA--------ACTAG--------------TTTTCAAActgtgtctatgtctctg
gi|6 : CCAAGTTCCAGCGCACAGATCATAATATAACTGTACGGATCCATGCATTG-------AATATAAAACCAATTTTATTTGAAAATTAAGAAAACGATT-----TTT-T---TTT--A----TTCAT---ATCATT--TTGCTACC--GACGAGTAATGAAT-GGGG-AA-GG-G-TTGATTTCA-TCACTTATAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGT-AAAAAAA-TATATGTTAAATA---TGCA---TACAATAA-TT---TGT--TTTT-T-AAA--------TAAG--TATC---------TGT-TTAGA----T-TTTGTTT--CAAAATGATTACCGACGACGACGCTATAATTTAATTACGTAATTT-----ATAGGAT-----G-----GGG-------AT-------G-G--------GA--T-----------TAT-----AAGTAGCTACTAT-T-AA--------------AGTCC-----TCCAGACT---TATAATTACTTGCCTAAA-CCAGTGACTTAATTAATTGTTTATATGTCTCTGCCTAAACCAA-----ATAGGACAATGGGCTCTAACATTTCAATATCGAAATGTCAAAAGAACAAACATTTTAGTTAATAGGAACACACGAG--AACAAACACGGCAATGTTGTGTCTATCATATTGGTCATGTATTA------GTATCTCTAATTGAAGTTTTAACTTTTTTTA-------TA----ATA------------------------CAA--------ACTAT--------------TTTTCAAAATATCAGCAGACATATAAACTATTAAGTCACT
gi|7 : AGCGGAAAA--ATGT-T---TTT--GCAAGTTCA----ATAATCAACTGTTA-----AAGAATAGTAGGT-GGGG-AATGG-G-TTGATTTCA-GCACTAGGGACTTTTCTTG----GGAATCAAGATTCAAA-------AACACTAACAATCAATCAAATACACT--------AAA--TAAAG--AAAATT---A---TG-----AAAA-TATA-ATTAAAAAAAATACT---TAAAAT-A-TC---TCTAATTTT-C-AAA--------AAAA--CATCAAGACGATCTGCCTTGTAT---T-GTTTTTT--CAATATG---GCCGACGA---CGCTATAATCAAATCACGTGACTC-----TCGGGATTTCTCA-----GGG-------AT-------GTA--------CG--T-----------TATTTTAAAAATAGCCACTAT----AG-TGGAAGA--ACAGG-CT-----TCCAGCCT---g
gi|8 : ccgtcaccccttcatatttgatctggtttcttggtcatttaataaattgttgaattatcaatttattaggaaaccagatgacgcatgcacctgcaactgtgtaaacaataatattggtttatgtggcgacggctttgcgcagttttctactaataataattatattgttatggtaaataaacagaatatattgatgaacgggttttgatactgttttattgttattattgataatgaaaaaataataaaaaaacataacGAGTAATGAAT-GGGG-AAAGG-G-TTGATTTCA-TCATTT-TAAATATTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATC----TTGTATACT-----GAGAAA--TATAGCAAAAAAA---AAAATGT-AAAAAAG-TATATGTTAAATA---TGTA---TACAATGA-TT---TTT--TTTT-T-ATA--------TAAG--TTTA---------TGT-TTAGAT---T-TTTGTTT--CAAAATGATTGCCGAAGATGACACTATAATTTAATTAGGTGATTT-----ATAGGAT-----G-----GGG-------GTGAGGGAAGGG--------GG--T-----------TAT-----AAATAGCTACTAT-TAAAG-CGGAAG---ATGGGTCC-----TCCTGATT---TATAATTACTTACCTAAA-CCAGTGACTTATTTGATTGTT--TATGTCTCTGCCTAAACCAA-----AAAGGACAATGTGCTCTAACATTTCATTATCGAAATTTCAAAAG----AACATTTTAGTTTATAGGAACACA---A---------ACGACAATGTTGTGACTATCA-----------TATTA------GTATCTCTAATTGAAGCTTCAAC--TTTTTA-------TA----ATATATAAAACTTGTGACTAGTGGCAACAA--------ACTAG--------------TTTTCAAAATGTCAGCAGACATATAAACTATTCAGTCACTcggtgtctatgtctctgt
gi|9 : GTTCACTTCCAGTGCATTTTTCAAAATATGTTTCT-TGCATTTT---TGTAAA--ACAATTATAATATAATAATACCGAAAAA--AAAATGATGTCAGAAGTCAACTTCCAAGTTCCAGCGCACAGATCATAATATAACTGTATAAATC-ATGCATTGCGCA----------------------TTGAA----TATAAAAC------CA---T-C---ATT--A----TTCATGATACCATT--TTGCTACA--GACGAGTAATGAAT-GGGG-AA-AG-GATTGATTTTAATCATTTATAAATAGTTTTA----AGAATCAGTATACAAA-------AATACTCGTAATCAATCTTGTATACT-----GAGAAA--TATAGCAAAAAAT---A---TGTAAAAAAAG-TATATGTTGAATA---TGCA---AACAATGA-AT---TGT--TTTT-T-AAA---------A----------------------------------TGTTT--CAAAATGATTGCCGACGATGACGCTATAATTGAATTACGTGAAAG-----ATTGGAT-----G-----G
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAGACATAGACGCAGAGACTCGCAGATACAGGTGCTTCTTGCTATAACTCGTAAACACCTATTGTTCTCAATCATGTGACCATGATCTCTGCCATATTTGATCTGGTTTCCTGGCCGTTTAATAAATTGTTGATTTATCGATTTATTAGGGAACAAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGATTACATGGCGACGGCTTTCTGCAGTTTTCTACTTATGATTATAATTATATTGTTGTGGTATATAA
Unaligned ( gi|16 ): CAGAGACATATGAAGGTGCAGGGGTTTCTCCGAATCTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCGCCATATTTGATCTTGTTTCCTTTATTAGGGAACCAGACGACGCGGTATTGTAGTTGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTACATGGCGAAGGCAATTTCCGCAATTTACTACTTATAATTATATTGTTGTGAT
Unaligned ( gi|17 ): AGAGACATAGACGCAGAGACTCGCAGGTGCAGGTGCTTCTCGCGATAACTCGTAAACACCTATTGTTCTCAATCACATGACCGTGATCTCCGCCATATTTGATCTGGCCGTTTTATTAGGGAACCAGACGACGCGCGCACCTGCAACTGTGTAAACAATAATATTGGTTTGCGTGGCAACGGATGAACAGGTTTTGATACTGTTTTATTGTTATTATT
Unaligned ( gi|22 ): ATATATATTTATATATATATATTTTTTTTAAAATATTAATCAAAAAACAAGTAAGTAGCGAATACTATTCATTCATCCATTGCTTTTCTAACAGTAATTTAAAGAAAAATCAATCAATATTATACACGCTTTCCG
Unaligned ( gi|25 ): AGACATAGACTCGCAGGTGCAGTTGCTTCTCACGATAACTCGTAAACACCTATTGTTCTCAATCACGTGACCGTGATCTCCTTCATATTGAT
Unaligned ( gi|26 ): TCTATATCTTAAGTATTTTTATCTTTTCCTAGNNNNNNNNNNTCCAT