lowQualScore : 1111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666666666666666666666666666666666666 2222 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222 22 22222222 111 111 333 1 2 1111111 111
lowQualScore : 5555555555555555555555555555555555555555555555555555555555 99 7 9999 1 5 44 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0 888888 4 9999 66 22 8888 4 4 8 55555555 1 55 222 2 4 444 1 44 1 3 44 000 0 6 8 4 7777777 555
lowQualScore : .......................................................... .. . .... . . .. . . ..................................................................................................................................................... . . ...... . .... .. .. .... . . . ........ . .. ... . . ... . .. . . .. ... . . . . ....... ...
lowQualScore : 8888888888888888888888888888888888888888888888888888888888 11 1 6666 4 0 11 4 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 2 666666 0 4444 11 22 4444 9 4 5 00000000 6 55 444 2 0 000 5 88 9 3 66 555 1 1 0 0 1111111 000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATACAATTTCTCAAGCANTGCTGNAAGGATA-------AACAAA-ATAA-CAAGG-CCATCCTTAAAAAA-ATATTTGTTTGCTG-TGCTCCGACCCAGTATTT-TTC-A-G-G-G-AGGT----A---GGTAGC-----------C-A-----T------A-------TT--TT-TT-T-------------------TGCCAGATTTT-------------GT---TTTAA--------AG-------------AAAAATGGACAGAAATCATG-AAAAA----AAA--TCAAA-GCTT-TGAAAGTCAA-TAAAAANGTT---TGGG-TAGCT--GCAA-TTTTGAGT-GAGTA---GGTAGGAGCACGGCAA-AC--AA-TNTATTTTTNAAGGATGGCC-T-----A-AAT--AGATAAAA
Reference ( gi|1 ) : TGATTCTATTCTTAGCCGGAACCACACGGTCATAAAACATTACAATCAGTACTGGTTCTACCAAGGAGGCAGACTAATTAGAGAGGTGTTCATAATGTTATAAGCTTTGAACATAAGCATTCTTCTCAATCAAGCTTAGGCCATAATAAATTAACTGCTAGATTACCATCCCCACCCGTCTTCTATATTTCATACTGCCCCAATCCTTTTCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AATAAATAGAA-TATGG-TCATCCCTAAAAAA-GTATTTGTTTGCTG-TGCTGCAACCCAGTATTT-TTC-ATGTGGGAAGGT----A---GGTAGC-----------T-A-----T------A-------TT--TT-TT-T-------------------TGCCAAA-----------------GT---TTTAA--------AG-------------AAAAATGGACAGAAAACATGCAAAGA----AAA--TCAAAAGCTT-TGAAAGTCAA-TAAAAATGTT---TATG-TAGCT--GCAA-TTTTGAGT-GAGTA---GATAAGAGCATGGCAA-AC--AA-TTTATTTTTAAAGGAT-GCC-T-----A-AAT--AGATAAAA
gi|5 : TCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAACAAA-ATAA-CAAGG-CCATCCTTAAAAAACAAATTTGTTTGCTG-TGATTGGACCCAGAATTT-TT----------AGGT----A---GATTGCATTTTAATCTTT-A-----T------A-------TT--TT-TC-TGCAGACTTTGATGTTTTATTGTCA--------------------T---TTTAA--------AC-------------AAAAGTGGACAGAAGTCATG---AAA----AAA--TTA----TCT-TCAAAGTCAA-TAAAAATGTT---TGGG-TAGCT--GCAA-TT-----T-GAGTA---GGTAGGAGTACGGCAA-GC--AA-
gi|6 : cagtgcttaacATG--GTAAGAA-A-------CACAAATGTAG-TTTGGGCCATCATTAAAAA---TGTTTGTTTGATG-TGCACCAACCCAGTATTT-TTTTATGTGGAAAGGT----A---GATAGG-----------T-A-----G------C-------TTCCTC-TT-T-------------------TGTCAGA------------------T---TTTGATTTTGCCTAG-------------GCA--TGGACAGAAATCATGAAAAAA----AAAGTTCAAC-GCTT-TGAAAGTTTA-TAAAAAGGTT---TGGG-TGGCT--GCAA-TTTTGAGT-GAGTT---GGTAAGAGAATGGCA------AT-TTTTTTTTTTAAGAATGGCC-T-----ata
gi|2 : acAAGATA-------ATTCGAAAGAAGCAAGG-CCATCCTTAAAAAA--TATTTGTTTGCTG-TGCTCCAACCCAGTATTT-TTC-AAGAGAGCAGGT----A---AGTAGC-----------CAA-----T------ATTTTTTTTT--TT-TT-T-------------------TATCAGATTTTG------------AT---TTTAT--------AGTATCATTTGAACAAAAAATGGTCAGAAGTCATGAAAAAA----ATA--TCAAAA-CTT------------TAAAAAAGTT---TGGG-TAGGT--GCAG-TTTT-AGT-GGGTA---CATAGGAGCAAGGCAA-ACTAAA-CATTTTTTTAAA-AAT-GCC-T-----C-AATAAAGATGAAAtggacacattttgtgttagt
gi|3 : ataataaatggtatattaaagatttagctcaccagtcaatgtA-TAGGG-CCATCCTTAAAAAA-A-ATTTGTTTG--G-TGCTCTGACACAGTATTT-TT------------GT----A---GGTAGC-----------C-AAT---T------A-------TT--TT-TT-T-------------------------------------------AT---TTTAA--------AG-------------AAAAATCGACAGTAATCATG-AAAAA----AAA--TTAAACGCTT-TGAATGTCAA-TGAAAAAGTT---TAGG-TAGTT--GCAA-TTCTGAGC-GAGAA---GATAGGAGCATGGCAA-AC--AT-TATATTTTT-AAGGATGGCC-T-----AGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcGG-CCATCCTTAAAAAA--TGTTTGTTTGCTA-TGCTACATTCCAGTATTT-TTC-ATGTGGGTAGGT----ATAAAGTAGC-----------T-AAATGTTGCCAGAA-------TT--TTATT-T-------------------TGC-ACA-----------------GCA--TTTAA--------AC-------------AAAAATGGACAAAAATCAT---AAAA----CAA--TTAAATGCTT-TGAAAGACAA-TAAAAA-ATT---TGGG-TATCTCTGCAA-CTTTGAGT-AAGTA---GGTAGAAGCACAACAA-AC--AA--GTATTTTT-ATGGACAGCCTT-----T-AAT--ATATAAAAaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|4 : tcattaaaagatatcttactgaataaatctgtttgagctaGG-CTGTCCATAAAAA---TACTTGTTTGTTG-TGCTTCTACC---TACTTACTC-A------AAGTTGCAGA---GATACC-----------C-A-----A------A-------TT--TT-TTAT-------------------TGTC---------------------T---TTCAA--------AG-------------ttccctaataaca
gi|8 : tcattaaaagatatcttactgaataaatctgtttgagctaggccatccttaaaaaatgtttgtttgctatgctacattccagtatttttcatgtgggtaggtataaagtagctaaatgttgccagaattttattttgcacagcatttaaacaaaaatggacaaaaatcataaaacaattaaatgGG-CCATCCTTTAAAAA--TATTTTCTTGCTG-TGCTCTGGCCCAGTATTT-TTT-CTGT----AGGT----A---AAAAAC--------------------------A-------TT--TT-TT-T-------------------TGCTAAATTTTGAATTTTTTTATTGTCCTTTCAA--------AC-------------AAAAATGGGCAGAAAA-----AAAGATACAAAA--TCAAT-GCTT-AGAAAGTCAA-CAAAATTGTT---TGGGTTAG-T--GCAG--TTTGAGTGGGGTA----ATAGGAGCACGGCAA-AC--Atttaatatataaaattccctaataaca
gi|10 : taGG-TCATTATTAAAAGA-ATGTTTGTTTGCCATTACTTGATCCCAG---TT-CTC-A-----GAAGGG----A---GGTAGG-----------G-A------------A-------TT--TT-TT-T-------------------Tgacac
gi|8 : a-----------T-A-----T------C-------TT--TT-TT-TC------------------TGCCCATTTTT-------------GT---TT------------G-------------AAA---GGACA------AT--AAAAA----AAT--TCAAAA--TT-T---AG-CAA-AAAAAATGTT---T-TT-TACCT--ACA------GAAA-AAATACTGGGCCAGAGCACAGCAAGAA--AA-T--ATTTTTAAAGGATGGCC-T-----A-caatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|14 : GACAAAAATTATACAAAAA----AAA--TTCAACCCTT-TG-AAGTTAGTTAAAAAGGTT------------T--GCA-----TGGGT-GTGTA---GGT----GCATGGTGA-AA--AA---CATTTTT-ATGGAT-GTC-C-----A-AAcaaaatcaatgcttagaaagtcaacaaaattgtttgggttagtgcagtttgagtggggtaataggagcacggcaaacagacac
gi|2 : aaatctA----AAA--TCAAAATCTGATAAAAAAAAA-AAAAAATATTGGCTACT-TACCT--GCTC-TCTTGAA--AAATACTGGGTTGGAGCACAGCAA-AC--AA--ATATTTTTTAAGGATGGCC-T-----gtacaagaagaa
gi|9 : ataataaatggtatattaaagatttagctcaccagtcaatgtaagataattcgaaagaagcaAAAAAAATT---TGGA-TAGCT--GCAATTTTTGAAT-GAGAA---GGTAGGAGTACGGCAA-GC--AAGTTTCTTTTTAAGGAGG-GCC-atagtatcatttgaacaaaaaatggtcagaagtcatgaaaaaaatatcaaaactttaaaaaagtttgggtaggtgcagttttagtgggtacataggagcaaggcaaactaaacatttttttaaaaatgcctcaataaagatgaaaacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : AGCATAGCAA-AC--AA--ACATTTTTTAAGGATGGCC-TAGCTCA-AAC--AGATcttagcgtgacttcataagttatatgaaaaattaataatttctaaaatacaaagtttcaaacataaaattggaagatgatattttcatatggtaataaa
gi|5 : tcattaaaagatatcttactgaataaCACAGCAA-AC--AAATTTGTTTTTTAAGGATGGCC-T-----acattccagtatttttcatgtgggtaggtataaagtagctaaatgttgccagaattttattttgcacagcatttaaacaaaaatggacaaaaatcataaaacaattaaatgctttgaaagacaataaaaaatttgggtatctctgcaactttgagtaagtaggtagaagcacaacaaacaagtatttttatggacagcctttaatatataaaattccctaataaca
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GCCAACATTAAAATAATGTTTGTTTGTTGTCACCCCGATCCTCAGGTTTTCAAAATTGGGTAGGTAGGTACTTTTTTTTTAAATATCAAACAGATATTATCCTTATATACAATAAATGTCATACATGCAATGCAATAACAGTTTCCCAAATTTAAAAAAAAAAGATTTTGAGAAGGCAGCTTTTTTGATGGGTAGGTTACTAAGAGAGACAACAAACAAACAACTTTTAAATTTTGGCCT
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|12 ): GGTCAGCATTAAATAAATGTTTGTTTGCCCGACGTCTCCCAATTCCTCATTTTCAAAATTAGGTATGTTAGTAGCCTAGGGAACAAAATTTTAAAAAGTATTATCGTTAAAAAAATATAAAAAATGTCATACA
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC
Unaligned ( gi|16 ): TAAGCAAGCATTCAAATAATATTTGTTTGCTTTCTCCTGATCCTGGACTTTCAAAACATGATAGGTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 222222 1111 1 4444444444 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 11 11111 1111 1111111
lowQualScore : 3333 2 999999 1 5555 2 7777777777 3 7 8 2 88 4 4 1 4 99 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 00 4 4 777 55 1 1 66 4 1 55 4 7777 7777 4 4 00000 4 55 7777 9 2 4 8888888 99
lowQualScore : .... . ...... . .... . .......... . . . . .. . . . . .. . ......................................................................................................................................... . . .. . . ... .. . . .. . . .. . .... .... . . ..... . .. .... . . . ....... ..
lowQualScore : 5555 5 555555 0 7777 0 3333333333 3 0 0 6 77 0 0 6 0 55 8 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 66 4 4 888 22 0 8 11 4 0 55 0 1111 4444 0 0 00000 0 00 7777 7 9 4 5555555 22
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCANTGCTAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATATTTGTTTGCTG-T-GCTCC-GA--CCCAGTATTTTTC---------A----GGN----A-GGTA---GGTAGC-----------T-ATA-------TTTTTTTTG-----C---CAGA------TTTTGA---------------T------TT-TAAAC-------------AA-AAATGGACAGAAATCATG--AAAAAA-A-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-T-----A-AAT--AGATAAAA
Reference ( family-3536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATACAATTTCTCAAGCANTGCTGNAAGGATA-------AA-CAAA-ATAA-CAAGGCCATCCTTAAAAAA-ATATTTGTTTGCTG-T-GCTCC-GA--CCCAGTATTTTTC---------A----GGG----A-GGTA---GGTAGC-----------C-ATA-------TTTTTTTTG-----C---CAGA------TTTTG----------------T------TT-TAAAG-------------AA-AAATGGACAGAAATCATG--AAAAAA-A-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AATNTATTTTTNAAGGATGGCC-T-----A-AAT--AGATAAAA
gi|1 : TCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AA-TAAATAGAA-TATGGTCATCCCTAAAAAA-GTATTTGTTTGCTG-T-GCTGC-AA--CCCAGTATTTTTC---------ATGTGGGA----A-GGTA---GGTAGC-----------T-ATA-------TTTTTTTTG-----C---CAAA----------G----------------T------TT-TAAAG-------------AA-AAATGGACAGAAAACATGC-AAAGAA-A-A---TCAAAAGCTTTGAAAGTC--AA-TAAAAATG--TTTATG-TA--GCTGCAA---TTTT-GAGT-GAGTAGAT-----AA-GAGCATGGCAAAC--AATTTATTTTTAAAGGAT-GCC-T-----A-AAT--AGATAAAA
gi|10 : tgattctattcttagccggaaccacacggtcataaaacattacaatcagtactggttctaccaaggaggcagactaattagagaggtgttcataatgttataagctttgaacataagcattcttctcaatcaagcttaggccataataaattaactgctagattaccatccccacccgtcttctatatttcatactgccccaatcctttAGGTCATTATTAAAAGA-ATGTTTGTTTGCCATT-ACT-T-GAT-CCCAG---TTCTCAGA------A----GGG----A-GGTA---GGGA-----------------A-------TTTTTTTT
gi|14 : GACAAAAATTATACAAAAAAA-A-T---TCAAC-CCTTTG-AAGTT--AGTTAAAAAGG--TT-----------TGCA-------T-GGGT-GTGTAGGT----------GCATGGTGAAA--AACA---TTTTTATGGATGTCC-A-----A-AGT--caatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|16 : aaatctAG-CAAG--CATTC---AAATA-ATATTTGTTTGCT--T-TCTCCTGA--TCCTGGACTTTCA---------A----AAC----ATGATA---GGTAcaagaagaa
gi|2 : taTGTAAG-ATA-------ATTCGAA-AGAAGCAAGGCCATCCTTAAAA-A-ATATTTGTTTGCTG-T-GCTCC-AA--CCCAGTATTTTTC---------A----AGAGAGCA-GGTA---AGTAGC-----------CAATATTTTTTTTTTTTTTTA-----T---CAGA------TTTTGA---------------T------TT-TATAGTATCATTTGAACAAA-AAATGGTCAGAAGTCATG--AAAAAA-ATA---TCAAA-ACTT-------------TAAAAAAG--TTTGGG-TA--GGTGCAG---TTTT--AGT-GGGTACAT-----AG-GAGCAAGGCAAACTAAACAT-TTTTTTAAAAAT-GCC-T-----C-AATAAAGATGAAAt
gi|3 : ataataaatggtatattaaagatttagctcaccagtcaaA-TAGGGCCATCCTTAAAAAA-A-ATTTGTTTG--G-T-GCTCT-GA--CACAGTATTTTT-------------------------GTA---GGTAGC-----------C-A-A-------TTATTTTT----------------------TTA----------------T------TT-TAAAG-------------AA-AAATCGACAGTAATCATG--AAAAAA-A-A---TTAAACGCTTTGAATGTC--AA-TGAAAAAG--TTTAGG-TA--GTTGCAA---TTCT-GAGC-GAGAAGAT-----AG-GAGCATGGCAAAC--ATTATATTTTT-AAGGATGGCC-T-----AGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcAGCATAGCAAAC--AA-ACATTTTTTAAGGATGGCC-TAGCTCA-AAC--AGATaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|4 : tcattaaaagatatcttactgaataaAGGCCATCCTTAAAAAA--TGTTTGTTTGCTA-T-GCTAC-AT--TCCAGTATTTTTC---------ATGT-GGGT---A-GGTATAAAGTAGC-----------T-AAA-------TGTT----G-----C---CAGAATTTTATTTTG----------------CACAGCATT-TAAAC-------------AA-AAATGGACAAAAATCAT----AAAAC-A-A---TTAAATGCTTTGAAAGAC--AA-TAAAAAA---TTTGGG-TATCTCTGCAA---CTTT-GAGT-AAGTAGGT-----AG-AAGCACAACAAAC--AA-GTATTTTT-ATGGACAGCCTT-----T-AAT--ATATAAAAacattccagtatttttcatgtgggtaggtataaagtagctaaatgttgccagaattttattttgcacagcatttaaacaaaaatggacaaaaatcataaaacaattaaatgctttgaaagacaataaaaaatttgggtatctctgcaactttgagtaagtaggtagaagcacaacaaacaagtatttttatggacagcctttaatatataaaattccctaataaca
gi|5 : tcattaaaagatatcttactgaataaatctgtttgagctTCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAA-CAAA-ATAA-CAAGGCCATCCTTAAAAAACAAATTTGTTTGCTG-T-GATTG-GA--CCCAGAATTTTT----------------------A-GGTA---GATTGCATTTTAATCTTT-ATA--------TTTTTCTG---------CAGA------CTTTGATGTTTTATTGTCA--T------TT-TAAAC-------------AA-AAGTGGACAGAAGTCATG--AAAAAATT-A---TC-------TTCAAAGTC--AA-TAAAAATG--TTTGGG-TA--GCTGCAA---TT------T-GAGTAGGT-----AG-GAGTACGGCAAGC--AAttccctaataaca
gi|6 : cagtgcttaacGGCCATCATTAAAAA---TGTTTGTTTGATG-T-GCACC-AA--CCCAGTATTTTTTTATGTGGAAA----GGT----A-GATA---GGTAGC--------------TT-------CCTCTTTTG-----T---CAGA------TTTTGA---------------T------TT-TGCCT-------------AG-GCATGGACAGAAATCATG--AAAAAA-A-AAGTTCAAC-GCTTTGAAAGTT--TA-TAAAAAGG--TTTGGG-TG--GCTGCAA---TTTT-GAGT-GAGTTGGT-----AA-GAGAATGGCA-----ATTTTTTTTTTTAAGAATGGCC-T-----ata
gi|7 : acatggtaagaaacacaaatgtagtttgGCCAACATTAAAATA-ATGTTTGTTTGTTG-TCACCCC-GATCCTCAG--GTTTTC---------A----AAATT--G-GGTA---GGTAGG-----------T-ACT-------TTTTTTTTAAATATCAAACAGA------TATTA----------------TCC----TTATATAC-------------AATAAATGT-CATA---CATG--CAATGC-A-A---TAACA-GTTTCCCAAATTTAAA-AAAAAAAGATTTTGAG-AA--G--GCAGCTTTTTT-GA-T-GGGTAGGTTACTAAGAGAG-ACAACAAAC--AAACAACTTTTAAATTTTGGCC-T-----tggacacattttgtgttagt
gi|8 : AGGCCATCCTTTAAAAA--TATTTTCTTGCTG-T-GCTCT-GG--CCCAGTATTTTTT---------C----TGT----A-GGTA---AAAAAC---------------A-------TTTTTTTTG-----C---TAAA------TTTTGAATTTTTTTATTGTCCT------TT-CAAAC-------------AA-AAATGGGCAGAAAAAAAG--ATACAA-A-A---TCAAT-GCTTAGAAAGTC--AA-CAAAATTG--TTTGGGTTA--G-TGCAG----TTT-GAGTGGGGTA-AT-----AG-GAGCACGGCAAAC--A
gi|9 : tAAAAAAA--TTTGGA-TA--GCTGCAA---TTTTTGAAT-GAGAAGGT-----AG-GAGTACGGCAAGC--AAGTTTCTTTTTAAGGAGGGCC-gacac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|12 ): GGTCAGCATTAAATAAATGTTTGTTTGCCCGACGTCTCCCAATTCCTCATTTTCAAAATTAGGTATGTTAGTAGCCTAGGGAACAAAATTTTAAAAAGTATTATCGTTAAAAAAATATAAAAAATGTCATACA
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC
Alignments
lowQualScore : 2222 222222 2 111 4444444444 1 11 555555555555555555555555 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 22222 11
lowQualScore : 3333 1 888888 1 3 000 7777777777 0 3 6 33 4 4 1 4 99 5 111111111111111111111111 4 777 4 8888 88888 4 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 1 00 4 4 777 55 1 1 66 4 1 55 4 7777 666 3 55 3 99999 3 4 7777 55 33333 4 2 4 99 11
lowQualScore : .... . ...... . . ... .......... . . . .. . . . . .. . ........................ . ... . .... ..... . ...................................................................................... . . . .. . . ... .. . . .. . . .. . .... ... . .. . ..... . . .... .. ..... . . . .. ..
lowQualScore : 5555 0 000000 0 3 000 3333333333 7 3 7 66 0 0 6 0 55 8 444444444444444444444444 0 000 0 5555 77777 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 66 4 4 888 22 0 8 11 4 0 55 0 1111 444 6 00 6 11111 6 3 7777 00 99999 4 9 4 00 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATATTTGTTTGCTG-T-GCTCC-GA--CCCAGTATTTTTC---------A----GG--T----A-GGTA---G-GT----AGCTA--TAT-TTTTTTT-------G-----C---CAGATTTTG-------------A---------------T--TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAA-A-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAG--T-GAGTAGGT-----AG-GAGCACG----GCAAAC--AANNTATTT-TTTAAGGATGGCC-TA-AAT--AGATAAAA
Reference ( family-3536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCANTGCTAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATATTTGTTTGCTG-T-GCTCC-GA--CCCAGTATTTTTC---------A----GG--N----A-GGTA---G-GT----AGCTA--TAT-TTTTTTT-------G-----C---CAGATTTTG-------------A---------------T--TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAA-A-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAG--T-GAGTAGGT-----AG-GAGCACG----GCAAAC--AANNTATTT-TTTAAGGATGGCC-TA-AAT--AGATAAAA
gi|1 : TCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AA-TAAATAGAA-TATGGTCATCCCTAAAAAA-GTATTTGTTTGCTG-T-GCTGC-AA--CCCAGTATTTTTC---------ATGTGGG--A----A-GGTA---G-GT----AGCTA--TAT-TTTTTTT-------G-----C---CAAA------------------G---------------T--TT-T-----------A------------AAGAA-AAA-TGGACAGAAAACATGC-AAAGAA-A-A---TCAAAAGCTTTGAAAGTC--AA-TAAAAATG--TTTATG-TA--GCTGCAA---TTTT-GAG--T-GAGTAGAT-----AA-GAGCATG----GCAAAC--AATTTATTT-TTAAAGGAT-GCC-TA-AAT--AGATAAAA
gi|10 : tgattctattcttagccggaaccacacggtcataaaacattacaatcagtactggttctaccaaggaggcagactaattagagaggtgttcataatgttataagctttgaacataagcattcttctcaatcaagcttaggccataataaattaactgctagattaccatccccacccgtcttctatatttcatactgccccaatcctttAGGTCATTATTAAAAGA-ATGTTTGTTTGCCATT-ACT-T-GAT-CCCAG---TTCTC---------A-----G--A----A-GGGA---G-GT----AGGGA---AT-TTTTTTT-------
gi|12 : AA---TTTT-GAAAAT-GAGGAATT-----GG-GAG-ACGTCGGGCAAAC--AAAC-ATTTATTTAATGCTGACC-caatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|14 : GACAAAAATTATACAAAAAAA-A-T---TCAAC-CCTTTG-AAGTT--AGTTAAAAAGG--TT-----------TGCA-------T-GGG--T-GTGTAGGT----------GCATG----GTGAAA--AACA---TT-TTTATGGATGTCC-AA-AGT--aggtatgttagtagcctagggaacaaaattttaaaaagtattatcgttaaaaaaatataaaaaatgtcataca
gi|16 : aaatctAG-CAAG--CATTC---AAATA-ATATTTGTTTGCT--T-TCTCCTGA--TCCTGGACTTTCA---------A----AA--C----ATGATA---G-GT----Acaagaagaa
gi|2 : taCAATG-TAA---GATA-------ATTCGAA-AGAAGCAAGGCCATCCTTAAAAAA--TATTTGTTTGCTG-T-GCTCC-AA--CCCAGTATTTTTC---------A----AG--AGAGCA-GGTA---A-GT----AGCCAA-TAT-TTTTTTTTTTTTTTA-----T---CAGATTTTG-------------A---------------T--TT-T-----------ATAGTATCATTTGAACAA-AAAATGGTCAGAAGTCATG--AAAAAA-ATA---TCAAA-ACTT-------------TAAAAAAG--TTTGGG-TA--GGTGCAG---TTTT--AG--T-GGGTACAT-----AG-GAGCAAG----GCAAACTAAACAT-TTT-TTTAAAAAT-GCC-TC-AATAAAGATGAAAt
gi|3 : ataataaatggtatattaaagatttagctcaccagtA-TAGGGCCATCCTTAAAAAA-A-ATTTGTTTG--G-T-GCTCT-GA--CACAGTATTTTT---------------------------GTA---G-GT----AGCCAATTAT-TTTTTT----------------------------------------A---------------T--TT-T-----------A------------AAGAA-AAA-TCGACAGTAATCATG--AAAAAA-A-A---TTAAACGCTTTGAATGTC--AA-TGAAAAAG--TTTAGG-TA--GTTGCAA---TTCT-GAG--C-GAGAAGAT-----AG-GAGCATG----GCAAAC--ATTATA-TT-TTTAAGGATGGCC-TAGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcGAG-CTAGGCCATCCTTAAAAAA--TGTTTGTTTGCTA-T-GCTAC-AT--TCCAGTATTTTTC---------ATGTGGG--T----A-GGTATAAA-GT----AGCTA--AAT-GTT-----------G-----C---CAGAATTTT-------------A---------------T--TT-TGCACAGCATTTA------------AACAA-AAA-TGGACAAAAATCAT----AAAAC-A-A---TTAAATGCTTTGAAAGAC--AA-TAAAAAA---TTTGGG-TATCTCTGCAA---CTTT-GAG--T-AAGTAGGT-----AG-AAGCACA----ACAAAC--AA-GTA-TT-TTTATGGACAGCCTTT-AAT--ATATAAAAaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|5 : tcattaaaagatatcttactgaataaatctgtttTCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAA-CAAA-ATAA-CAAGGCCATCCTTAAAAAACAAATTTGTTTGCTG-T-GATTG-GA--CCCAGAATTTTT----------A----GG--T----A-GATT---GCATTTTAATCTT--TATATTTTTCT-------G---------CAGACTTTGATGTTTTATTGTCA---------------T--TT-T-----------A------------AACAA-AAG-TGGACAGAAGTCATG--AAAAAATT-A---TC-------TTCAAAGTC--AA-TAAAAATG--TTTGGG-TA--GCTGCAA---TT--------T-GAGTAGGT-----AG-GAGTACG----GCAAGC--AAttccctaataaca
gi|6 : cagtgcttaacGGCCATCATTAAAAA---TGTTTGTTTGATG-T-GCACC-AA--CCCAGTATTTTTTTATGTGGAAA----GG--T----A-GATA---G-GT----AGCT---T-C-CTCTTTT-------G-----T---CAGATTTTG-------------A---------------T--TT-T-----------G------------CCTAG-GCA-TGGACAGAAATCATG--AAAAAA-A-AAGTTCAAC-GCTTTGAAAGTT--TA-TAAAAAGG--TTTGGG-TG--GCTGCAA---TTTT-GAG--T-GAGTTGGT-----AA-GAGAATG----GCA-----ATTTTTTTT-TTTAAGAATGGCC-Tata
gi|7 : acatggtaagaaacacaaatgtagtttgGCCAACATTAAAATA-ATGTTTGTTTGTTG-TCACCCC-GATCCTCAG--GTTTTC---------A----AAATT----G-GGTA---G-GT----AGGTA--CTT-TTTTTTT-------AAATATCAAACAGATATT--------------A---------------TCCTTAT-----------A------------TACAATAAA-TGT-CATA---CATG--CAATGC-A-A---TAACA-GTTTCCCAAATTTAAA-AAAAAAAGATTTTGAG-AA--G--GCAGCTTTTTT-GA---T-GGGTAGGTTACTAAGAGAG-ACA----ACAAAC--AAACAACTT-TTAAATTTTGGCC-Ttggacacattttgtgttagt
gi|8 : AGGCCATCCTTTAAAAA--TATTTTCTTGCTG-T-GCTCT-GG--CCCAGTATTTTTT---------C----TG--T----A-GGTA---A-AA----AAC-----AT-TTTTTTT-------G-----C---TAAATTTTG-------------AATTTTTTTATTGTCCT--TT-C-----------A------------AACAA-AAA-TGGGCAGAAAAAAAG--ATACAA-A-A---TCAAT-GCTTAGAAAGTC--AA-CAAAATTG--TTTGGGTTA--G-TGCAG----TTT-GAG--TGGGGTA-AT-----AG-GAGCACG----GCAAAC--A
gi|9 : tAAAAAAA--TTTGGA-TA--GCTGCAA---TTTTTGAA--T-GAGAAGGT-----AG-GAGTACG----GCAAGC--AAGTTTCTT-TTTAAGGAGGGCC-gacac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC
Alignments
lowQualScore : 2222 222222 22 111 4444444444 1 11 11111 111111 44444444444444444444444444444444 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11111 11 11111 22222 11
lowQualScore : 3333 1 888888 00 000 7777777777 0 3 6 11 3 3 0 3 77777 333333 33333333333333333333333333333333 3 666 7777 4 88888 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 1 00 00000 55 22 66 4 1 55 4 7777 7777 4 4 00000 4 0 55 33333 4 5 99 11
lowQualScore : .... . ...... .. ... .......... . . . .. . . . . ..... ...... ................................ . ... .... . ..... . .................................................................................... . . . .. ..... .. .. .. . . .. . .... .... . . ..... . . .. ..... . . .. ..
lowQualScore : 5555 0 000000 77 000 3333333333 7 3 7 55 6 6 5 6 77777 555555 55555555555555555555555555555555 6 444 7777 0 77777 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 66 66666 22 99 11 4 0 55 0 1111 4444 0 0 00000 0 7 55 99999 5 0 00 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTT-----TC---------A----GG----T----A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
Reference ( family-3536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATATTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTT-----TC---------A----GG----T----A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
gi|1 : TCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AA-TAAATAGAA-TATGGTCATCCCTAAAAAA-GTATTTGTTTGCTG-T-GCTGC-AA-----CCCAGT-----ATTTT-----TC---------A----TG----TGGGAA-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAAA-----G---------------T-------------TT-T-----------A------------AAGAA-AAA-TGGACAGAAAACATGC-AAAGAAA-A---TCAAAAGCTTTGAAAGTC--AA-TAAAAATG--TTTATG-TA--GCTGCAA---TTTT-GAGT-GAGTAGAT-----AA-GAGCATGGCAAAC--AATTTATTTTTAAAGGAT-GCC-TA-AAT--AGATAAAA
gi|10 : tgattctattcttagccggaaccacacggtcataaaacattacaatcagtactggttctaccaaggaggcagactaattagagaggtgttcataatgttataagctttgaacataagcattcttctcaatcaagcttaggccataataaattaactgctagattaccatccccacccgtcttctatatttcatactgccccaatcctttAGGTCATTATTAAAAGA-ATGTTTGTTTGCCATT-ACT-T-GAT----CCCAG--------TTC-----TC---------A----GA---------A-GGGA---GG----TAG-GGA---AT-TTTTTTT-------
gi|12 : GGTCAGCATTAAATAA-ATGTTTGTTTGC--------CC-GACGTCTCCCAATTCCTCATTTTCAAAATT---------A----GG----T----A-TGTT---AG----TAG-Ccaatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|14 : GACAAAAATTATACAAAAAAAA-T---TCAAC-CCTTTG-AAGTT--AGTTAAAAAGG--TT-----------TGCA-------T-GGGT-GTGTAGGT----------GCATGGTGAAA--AACA---TTTTTATGGATGTCC-AA-AGT--ctagggaacaaaattttaaaaagtattatcgttaaaaaaatataaaaaatgtcataca
gi|16 : aaatctAG-CAAG--CATTC---AAATA-ATATTTGTTTGCT--T-TCTCCTGA-----TCCTGG-----ACTTT-----CA---------A----AA----C----ATGATA---GG----TAcaagaagaa
gi|2 : taCAATG-TAA---GATA-------ATTCGAA-AGAAGCAAGGCCATCCTTAAAAAA--TATTTGTTTGCTG-T-GCTCC-AA-----CCCAGT-----ATTTT-----TC---------A----AGAGAGC----A-GGTA---AG----TAG-CCAA-TAT-TTTTTTTTTTTTTTA-----T---CAGATTTTGA---------------T-------------TT-T-----------ATAGTATCATTTGAACAA-AAAATGGTCAGAAGTCATG--AAAAAAATA---TCAAA-ACTTT-------------AAAAAAG--TTTGGG-TA--GGTGCAG---TTTT--AGT-GGGTACAT-----AG-GAGCAAGGCAAACTAAACAT-TTTTTTAAAAAT-GCC-TC-AATAAAGATGAAAt
gi|3 : ataataaatggtatattaaagatttagctcaccagtA-TAGGGCCATCCTTAAAAAA-A-ATTTGTTTG--G-T-GCTCT-GA-----CACAGT-----ATTTT-----T-----------------------------GTA---GG----TAG-CCAATTAT-TTTTTT---------------------------A---------------T-------------TT-T-----------A------------AAGAA-AAA-TCGACAGTAATCATG--AAAAAAA-A---TTAAACGCTTTGAATGTC--AA-TGAAAAAG--TTTAGG-TA--GTTGCAA---TTCT-GAGC-GAGAAGAT-----AG-GAGCATGGCAAAC--ATTATA-TTTTTAAGGATGGCC-TAGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcGAG-CTAGGCCATCCTTAAAAAA--TGTTTGTTTGCTA-T-GCTAC-AT-----TCCAGT-----ATTTT-----TC---------ATGTGGG----T----A-GGTATAAAG----TAG-CTA--AAT-GTT-----------G-----C---CAGAATTTTA---------------T-------------TT-TGCACAGCATTTA------------AACAA-AAA-TGGACAAAAATCAT----AAAACA-A---TTAAATGCTTTGAAAGAC--AA-TAAAAAA---TTTGGG-TATCTCTGCAA---CTTT-GAGT-AAGTAGGT-----AG-AAGCACAACAAAC--AA-GTA-TTTTTATGGACAGCCTTT-AAT--ATATAAAAaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|5 : tcattaaaagatatcttactgaataaatctgtttTCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAA-CAAA-ATAA-CAAGGCCATCCTTAAAAAACAAATTTGTTTGCTG-T-GATTG-GA-----CCCAGA-----ATTTT-----T----------A----GG----T----A-GATT---GCATTTTAATCTT--TATATTTTTCT-------G-----C----AGACTTTGA---------------TGTTTTATTGTCATTT-T-----------A------------AACAA-AAG-TGGACAGAAGTCATG--AAAAAATTA---TC-------TTCAAAGTC--AA-TAAAAATG--TTTGGG-TA--GCTGCAA---TT------T-GAGTAGGT-----AG-GAGTACGGCAAGC--AAttccctaataaca
gi|6 : cagtgcttaacGGCCATCATTAAAAA---TGTTTGTTTGATG-T-GCACC-AA-----CCCAGT-----ATTTT-----TTTATGTGGAAA----GG----T----A-GATA---GG----TAG-CT---T-C-CTCTTTT-------G-----T---CAGATTTTGA---------------T-------------TT-T-----------G------------CCTAG-GCA-TGGACAGAAATCATG--AAAAAAA-AAGTTCAAC-GCTTTGAAAGTT--TA-TAAAAAGG--TTTGGG-TG--GCTGCAA---TTTT-GAGT-GAGTTGGT-----AA-GAGAATGGCA-----ATTTTTTTTTTTAAGAATGGCC-Tata
gi|7 : acatggtaagaaacacaaatgtagtttgGCCAACATTAAAATA-ATGTTTGTTTGTTG-TCACCCC-GATC---CTCAG-------GTTT-----TC---------A----AAAT--T----G-GGTA---GG----TAG-GTA--CTT-TTTTTTT-------AAATATCAAACAGATATT-A---------------TCC-----------TTAT-----------A------------TACAATAAA-TGT-CATA---CATG--CAATGCA-A---TAACA-GTTTCCCAAATTTAAA-AAAAAAAGATTTTGAG-AA--G--GCAGCTTTTTT-GA-T-GGGTAGGTTACTAAGAGAG-ACAACAAAC--AAACAACTTTTAAATTTTGGCC-Ttggacacattttgtgttagt
gi|8 : AGGCCATCCTTTAAAAA--TATTTTCTTGCTG-T-GCTCT-GG-----CCCAGT-----ATTTT-----TT---------C----TG----T----A-GGTA---AA----AAA-C-----AT-TTTTTTT-------G-----C---TAAATTTTGAATTTTTTTATTGTCCT-------------TT-C-----------A------------AACAA-AAA-TGGGCAGAAAAAAAG--ATACAAA-A---TCAAT-GCTTAGAAAGTC--AA-CAAAATTG--TTTGGGTTA--G-TGCAG----TTT-GAGTGGGGTA-AT-----AG-GAGCACGGCAAAC--A
gi|9 : tAAAAAAA--TTTGGA-TA--GCTGCAA---TTTTTGAAT-GAGAAGGT-----AG-GAGTACGGCAAGC--AAGTTTCTTTTTAAGGAGGGCC-gacac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC
Alignments
lowQualScore : 2222 222222 22 111 4444444444 1 11 11111 111111 44444444444444444444444444444444 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11111 11 11111 22222 11
lowQualScore : 3333 1 888888 00 000 7777777777 0 3 6 11 3 3 0 3 77777 333333 33333333333333333333333333333333 3 666 7777 4 88888 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 1 00 00000 55 22 66 4 1 55 4 7777 7777 4 4 00000 4 0 55 33333 4 5 99 11
lowQualScore : .... . ...... .. ... .......... . . . .. . . . . ..... ...... ................................ . ... .... . ..... . .................................................................................... . . . .. ..... .. .. .. . . .. . .... .... . . ..... . . .. ..... . . .. ..
lowQualScore : 5555 0 000000 77 000 3333333333 7 3 7 55 6 6 5 6 77777 555555 55555555555555555555555555555555 6 444 7777 0 77777 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 66 66666 22 99 11 4 0 55 0 1111 4444 0 0 00000 0 7 55 99999 5 0 00 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTT-----TC---------A----GG----T----A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
Reference ( family-3536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTT-----TC---------A----GG----T----A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
gi|1 : TCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AA-TAAATAGAA-TATGGTCATCCCTAAAAAA-GTATTTGTTTGCTG-T-GCTGC-AA-----CCCAGT-----ATTTT-----TC---------A----TG----TGGGAA-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAAA-----G---------------T-------------TT-T-----------A------------AAGAA-AAA-TGGACAGAAAACATGC-AAAGAAA-A---TCAAAAGCTTTGAAAGTC--AA-TAAAAATG--TTTATG-TA--GCTGCAA---TTTT-GAGT-GAGTAGAT-----AA-GAGCATGGCAAAC--AATTTATTTTTAAAGGAT-GCC-TA-AAT--AGATAAAA
gi|10 : tgattctattcttagccggaaccacacggtcataaaacattacaatcagtactggttctaccaaggaggcagactaattagagaggtgttcataatgttataagctttgaacataagcattcttctcaatcaagcttaggccataataaattaactgctagattaccatccccacccgtcttctatatttcatactgccccaatcctttAGGTCATTATTAAAAGA-ATGTTTGTTTGCCATT-ACT-T-GAT----CCCAG--------TTC-----TC---------A----GA---------A-GGGA---GG----TAG-GGA---AT-TTTTTTT-------
gi|12 : GGTCAGCATTAAATAA-ATGTTTGTTTGC--------CC-GACGTCTCCCAATTCCTCATTTTCAAAATT---------A----GG----T----A-TGTT---AG----TAG-Ccaatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|14 : GACAAAAATTATACAAAAAAAA-T---TCAAC-CCTTTG-AAGTT--AGTTAAAAAGG--TT-----------TGCA-------T-GGGT-GTGTAGGT----------GCATGGTGAAA--AACA---TTTTTATGGATGTCC-AA-AGT--ctagggaacaaaattttaaaaagtattatcgttaaaaaaatataaaaaatgtcataca
gi|16 : aaatctAG-CAAG--CATTC---AAATA-ATATTTGTTTGCT--T-TCTCCTGA-----TCCTGG-----ACTTT-----CA---------A----AA----C----ATGATA---GG----TAcaagaagaa
gi|2 : taCAATG-TAA---GATA-------ATTCGAA-AGAAGCAAGGCCATCCTTAAAAAA--TATTTGTTTGCTG-T-GCTCC-AA-----CCCAGT-----ATTTT-----TC---------A----AGAGAGC----A-GGTA---AG----TAG-CCAA-TAT-TTTTTTTTTTTTTTA-----T---CAGATTTTGA---------------T-------------TT-T-----------ATAGTATCATTTGAACAA-AAAATGGTCAGAAGTCATG--AAAAAAATA---TCAAA-ACTTT-------------AAAAAAG--TTTGGG-TA--GGTGCAG---TTTT--AGT-GGGTACAT-----AG-GAGCAAGGCAAACTAAACAT-TTTTTTAAAAAT-GCC-TC-AATAAAGATGAAAt
gi|3 : ataataaatggtatattaaagatttagctcaccagtA-TAGGGCCATCCTTAAAAAA-A-ATTTGTTTG--G-T-GCTCT-GA-----CACAGT-----ATTTT-----T-----------------------------GTA---GG----TAG-CCAATTAT-TTTTTT---------------------------A---------------T-------------TT-T-----------A------------AAGAA-AAA-TCGACAGTAATCATG--AAAAAAA-A---TTAAACGCTTTGAATGTC--AA-TGAAAAAG--TTTAGG-TA--GTTGCAA---TTCT-GAGC-GAGAAGAT-----AG-GAGCATGGCAAAC--ATTATA-TTTTTAAGGATGGCC-TAGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcGAG-CTAGGCCATCCTTAAAAAA--TGTTTGTTTGCTA-T-GCTAC-AT-----TCCAGT-----ATTTT-----TC---------ATGTGGG----T----A-GGTATAAAG----TAG-CTA--AAT-GTT-----------G-----C---CAGAATTTTA---------------T-------------TT-TGCACAGCATTTA------------AACAA-AAA-TGGACAAAAATCAT----AAAACA-A---TTAAATGCTTTGAAAGAC--AA-TAAAAAA---TTTGGG-TATCTCTGCAA---CTTT-GAGT-AAGTAGGT-----AG-AAGCACAACAAAC--AA-GTA-TTTTTATGGACAGCCTTT-AAT--ATATAAAAaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|5 : tcattaaaagatatcttactgaataaatctgtttTCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAA-CAAA-ATAA-CAAGGCCATCCTTAAAAAACAAATTTGTTTGCTG-T-GATTG-GA-----CCCAGA-----ATTTT-----T----------A----GG----T----A-GATT---GCATTTTAATCTT--TATATTTTTCT-------G-----C----AGACTTTGA---------------TGTTTTATTGTCATTT-T-----------A------------AACAA-AAG-TGGACAGAAGTCATG--AAAAAATTA---TC-------TTCAAAGTC--AA-TAAAAATG--TTTGGG-TA--GCTGCAA---TT------T-GAGTAGGT-----AG-GAGTACGGCAAGC--AAttccctaataaca
gi|6 : cagtgcttaacGGCCATCATTAAAAA---TGTTTGTTTGATG-T-GCACC-AA-----CCCAGT-----ATTTT-----TTTATGTGGAAA----GG----T----A-GATA---GG----TAG-CT---T-C-CTCTTTT-------G-----T---CAGATTTTGA---------------T-------------TT-T-----------G------------CCTAG-GCA-TGGACAGAAATCATG--AAAAAAA-AAGTTCAAC-GCTTTGAAAGTT--TA-TAAAAAGG--TTTGGG-TG--GCTGCAA---TTTT-GAGT-GAGTTGGT-----AA-GAGAATGGCA-----ATTTTTTTTTTTAAGAATGGCC-Tata
gi|7 : acatggtaagaaacacaaatgtagtttgGCCAACATTAAAATA-ATGTTTGTTTGTTG-TCACCCC-GATC---CTCAG-------GTTT-----TC---------A----AAAT--T----G-GGTA---GG----TAG-GTA--CTT-TTTTTTT-------AAATATCAAACAGATATT-A---------------TCC-----------TTAT-----------A------------TACAATAAA-TGT-CATA---CATG--CAATGCA-A---TAACA-GTTTCCCAAATTTAAA-AAAAAAAGATTTTGAG-AA--G--GCAGCTTTTTT-GA-T-GGGTAGGTTACTAAGAGAG-ACAACAAAC--AAACAACTTTTAAATTTTGGCC-Ttggacacattttgtgttagt
gi|8 : AGGCCATCCTTTAAAAA--TATTTTCTTGCTG-T-GCTCT-GG-----CCCAGT-----ATTTT-----TT---------C----TG----T----A-GGTA---AA----AAA-C-----AT-TTTTTTT-------G-----C---TAAATTTTGAATTTTTTTATTGTCCT-------------TT-C-----------A------------AACAA-AAA-TGGGCAGAAAAAAAG--ATACAAA-A---TCAAT-GCTTAGAAAGTC--AA-CAAAATTG--TTTGGGTTA--G-TGCAG----TTT-GAGTGGGGTA-AT-----AG-GAGCACGGCAAAC--A
gi|9 : tAAAAAAA--TTTGGA-TA--GCTGCAA---TTTTTGAAT-GAGAAGGT-----AG-GAGTACGGCAAGC--AAGTTTCTTTTTAAGGAGGGCC-gacac
blockSeqs : ACCA C TTTCTC CT AAG CTGTTGCAA . G CA T C T CGTCT TTCCTC TTTATGTGGAAAGGT T TAA ATTT T CAATT A TTTTTTTATCAGATTTTGATTTTATAGTATCATTTG T A A CA AAGT AC GA TA T G AT T TCTC GCTT T G TACTA A TA TTTTT G T AG AA
blockSeqs : T . ATT . . A . . . TC G CAAAATTAGGT . . . . CAAT . GCTAAATTTTGAATTTTTTTATTGTCCTTTCA . . T . TA AT GA . . A . . GG G . . . . . ACAAC G . A .
blockSeqs : . A . . . T T TCAAGAGAGC . . . . TAA . GCAGACTTTGATGTTTTATTGTCATTTTA . . A . TA C CA . . A . . GT A . . . . . GTTTC A . C .
blockSeqs : . A . . . . T TCATGTGGGT . . . . TTT . GCCAGAATTTTATTTTGCACAGCATTTA . . A . T A GA . . A . . GC A . . . . . CATT G . T .
blockSeqs : . A . . . . T TCAAAATT . . . . TAC . AAATATCAAACAGATATTATCCTTATA . . A . A C CC . . T . . GC A . . . . . TATA G .
blockSeqs : A . . . . A CAAAAC . . . . GA . GTCAGATTTTGATTTTG . . A . A A GA . . G . . GC A . . . . . GTA G .
blockSeqs : . . . . . T TTCTGT . . . . TT . ATTTTA . . G . A T G . . A . . G G . . . . . CA . .
blockSeqs : . . . . . T TCAGA . . . . . . . . A . . . . T . . G A . . . . .
blockSeqs : . . . . . . TAGGT . . . . A . . . . . . . . .
blockSeqs : . . . . . . T . . .
blockSeqCons : TCAAAGGT************************ ** N*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTT-----TC---------A----GG----T----A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAA-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCCAGT-----ATTTTTCAAAGGT------------------------A-GGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAAA-A---TCAAN-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC
Alignments
lowQualScore : 2222 222222 22 111 4444444444 1 11 11111 11111111 44444444444444444444 11111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 11111 22222 11
lowQualScore : 3333 1 888888 00 000 7777777777 0 3 6 11 3 3 0 3 22222 55 33333333 22222222222222222222 666 8888 4 88888 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 5 1 00 4 99999 11 22 66 4 1 55 4 7777 7777 4 4 00000 4 0 55 33333 4 5 99 11
lowQualScore : .... . ...... .. ... .......... . . . .. . . . . ..... .. ........ .................... ... .... . ..... . .................................................................................... . . . .. . ..... .. .. .. . . .. . .... .... . . ..... . . .. ..... . . .. ..
lowQualScore : 5555 0 000000 77 000 3333333333 7 3 7 55 6 6 5 6 77777 00 22222222 33333333333333333333 444 5555 4 66666 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 0 66 4 00000 44 99 11 4 0 55 0 1111 4444 0 0 00000 0 7 55 99999 5 0 00 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCC--AGTAT-----TTTT-C-------A-A-A----G-GTAGGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAA-A-A---TCAAN-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
Reference ( family-3536 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTTACCACATANAATTTCTNAAGCAATG-TAAAAGGATA-------AA-CGAA-AGAA-CAAGGCCATCCTTAAAAAA-ATGTTTGTTTGCTG-T-GCTCC-GA-----CCC--AGTAT-----TTTT-C-------A-A-A----G-GTAGGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAGATTTTGA---------------T-------------TT-T-----------A------------AACAA-AAA-TGGACAGAAATCATG--AAAAAA-A-A---TCAAN-GCTTTGAAAGTC--AA-TAAAAANG--TTTGGG-TA--GCTGCAA---TTTT-GAGT-GAGTAGGT-----AG-GAGCACGGCAAAC--AANNTATTTTTTAAGGATGGCC-TA-AAT--AGATAAAA
gi|1 : TCATTTT----CATAAAA-----AAAACAATG--AAAAAAATA-------AA-TAAATAGAA-TATGGTCATCCCTAAAAAA-GTATTTGTTTGCTG-T-GCTGC-AA-----CCC--AGTAT-----TTTT-C-------A-T-GTG--G-GAAGGTA---GG----TAG-CTA--TAT-TTTTTTT-------G-----C---CAAA-----G---------------T-------------TT-T-----------A------------AAGAA-AAA-TGGACAGAAAACATGC-AAAGAA-A-A---TCAAAAGCTTTGAAAGTC--AA-TAAAAATG--TTTATG-TA--GCTGCAA---TTTT-GAGT-GAGTAGAT-----AA-GAGCATGGCAAAC--AATTTATTTTTAAAGGAT-GCC-TA-AAT--AGATAAAA
gi|10 : tgattctattcttagccggaaccacacggtcataaaacattacaatcagtactggttctaccaaggaggcagactaattagagaggtgttcataatgttataagctttgaacataagcattcttctcaatcaagcttaggccataataaattaactgctagattaccatccccacccgtcttctatatttcatactgccccaatcctttAGGTCATTATTAAAAGA-ATGTTTGTTTGCCATT-ACT-T-GAT----CCC--AG--------TTCT-C-------AGA-A----G-GGAGGTA---GG----GA--------AT-TTTTTTT-------
gi|12 : GGTCAGCATTAAATAA-ATGTTTGTTTGC--------CC-GACGTCTCCC--AAT-TCCTCATTTT-C-------A-A-A----A-TTAGGTA---TG----Tcaatatcatgtaattataatcgttataaaaatacaatattttaattttggccttaatgagtcagtaccagtttgccaatttc
gi|14 : GACAAAAATTATACAAAAAAA-A-T---TCAAC-CCTTTG-AAGTT--AGTTAAAAAGG--TT-----------TGCA-------T-GGGT-GTGTAGGT----------GCATGGTGAAA--AACA---TTTTTATGGATGTCC-AA-AGT--tagtagcctagggaacaaaattttaaaaagtattatcgttaaaaaaatataaaaaatgtcataca
gi|16 : aaatctAG-CAAG--CATTC---AAATA-ATATTTGTTTGCT--T-TCTCCTGA-----TCC--TGGA------CTTT-C-------A-A-AACATG-ATAGGTA---caagaagaa
gi|2 : taCAATG-TAA---GATA-------ATTCGAA-AGAAGCAAGGCCATCCTTAAAAAA--TATTTGTTTGCTG-T-GCTCC-AA-----CCC--AGTAT-----TTTT-C-------A-AGA----GAGCAGGTA---AG----TAG-CCAA-TAT-TTTTTTTTTTTTTTA-----T---CAGATTTTGA---------------T-------------TT-T-----------ATAGTATCATTTGAACAA-AAAATGGTCAGAAGTCATG--AAAAAA-ATA---TCAAA-ACTTT-------------AAAAAAG--TTTGGG-TA--GGTGCAG---TTTT--AGT-GGGTACAT-----AG-GAGCAAGGCAAACTAAACAT-TTTTTTAAAAAT-GCC-TC-AATAAAGATGAAAt
gi|3 : ataataaatggtatattaaagatttagctcaccagtA-TAGGGCCATCCTTAAAAAA-A-ATTTGTTTG--G-T-GCTCT-GA-----CAC--AGTAT-----TTTT------------------------GTA---GG----TAG-CCAATTAT-TTTTTT---------------------------A---------------T-------------TT-T-----------A------------AAGAA-AAA-TCGACAGTAATCATG--AAAAAA-A-A---TTAAACGCTTTGAATGTC--AA-TGAAAAAG--TTTAGG-TA--GTTGCAA---TTCT-GAGC-GAGAAGAT-----AG-GAGCATGGCAAAC--ATTATA-TTTTTAAGGATGGCC-TAGAAA--GGATAAAAacatttattcaataggacattatatgtgtttgttgtatctggtgcaaaaacagtaaaaatatatcagatgttttacatttttcttcaaatggatatcggaggtccatagatcatttataagtaataatttttaagcac
gi|4 : gtaaatctgcgtatgcGAG-CTAGGCCATCCTTAAAAAA--TGTTTGTTTGCTA-T-GCTAC-AT-----TCC--AGTAT-----TTTT-C-------A-T-GTG--G-GTAGGTATAAAG----TAG-CTA--AAT-GTT-----------G-----C---CAGAATTTTA---------------T-------------TT-TGCACAGCATTTA------------AACAA-AAA-TGGACAAAAATCAT---AAAACA-A-T---TAAAT-GCTTTGAAAGAC--AA-TAAAAAA---TTTGGG-TATCTCTGCAA---CTTT-GAGT-AAGTAGGT-----AG-AAGCACAACAAAC--AA-GTA-TTTTTATGGACAGCCTTT-AAT--ATATAAAAaggacttaatagttaataaagtgtttatacatggtaaaaattgttcaagggatatatatgttacataaagattactttagaaattgaatggaaccaggcaacatttaaaaactataaatttcaccagca
gi|5 : tcattaaaagatatcttactgaataaatctgtttTCATTTTACCACATACAATTTCTCAAGCACTGCTAAAAGGATACTGTTGCAA-CAAA-ATAA-CAAGGCCATCCTTAAAAAACAAATTTGTTTGCTG-T-GATTG-GA-----CCC--AGAAT-----TTTT-------------A----G-GTAGATT---GCATTTTAATCTT--TATATTTTTCT-------G-----C----AGACTTTGA---------------TGTTTTATTGTCATTT-T-----------A------------AACAA-AAG-TGGACAGAAGTCATG--AAAAAATT-A---TC-------TTCAAAGTC--AA-TAAAAATG--TTTGGG-TA--GCTGCAA---TT------T-GAGTAGGT-----AG-GAGTACGGCAAGC--AAttccctaataaca
gi|6 : cagtgcttaacGGCCATCATTAAAAA---TGTTTGTTTGATG-T-GCACC-AA-----CCC--AGTAT-----TTTT-TTATGTGGA-A-A----G-GTAGATA---GG----TAG-CT---T-C-CTCTTTT-------G-----T---CAGATTTTGA---------------T-------------TT-T-----------G------------CCTAG-GCA-TGGACAGAAATCATG--AAAAAA-A-AAGTTCAAC-GCTTTGAAAGTT--TA-TAAAAAGG--TTTGGG-TG--GCTGCAA---TTTT-GAGT-GAGTTGGT-----AA-GAGAATGGCA-----ATTTTTTTTTTTAAGAATGGCC-Tata
gi|7 : acatggtaagaaacacaaatgtagtttgGCCAACATTAAAATA-ATGTTTGTTTGTTG-TCACCCC-GA-----TCCTCAGG-------TTTT-C-------A-A-A----A-TTGGGTA---GG----TAG-GTA--CTT-TTTTTTT-------AAATATCAAACAGATATT-A---------------TCC-----------TTAT-----------A------------TACAATAAA-TGT-CATA---CATG--CAATGC-A-A---TAACA-GTTTCCCAAATTTAAA-AAAAAAAGATTTTGAG-AA--G--GCAGCTTTTTT-GA-T-GGGTAGGTTACTAAGAGAG-ACAACAAAC--AAACAACTTTTAAATTTTGGCC-Ttggacacattttgtgttagt
gi|8 : AGGCCATCCTTTAAAAA--TATTTTCTTGCTG-T-GCTCT-GG-----CCC--AGTAT-----TTTTTC----------------T-GTAGGTA---AA----AAA-C-----AT-TTTTTTT-------G-----C---TAAATTTTGAATTTTTTTATTGTCCT-------------TT-C-----------A------------AACAA-AAA-TGGGCAGAAAAAAAG--ATACAA-A-A---TCAAT-GCTTAGAAAGTC--AA-CAAAATTG--TTTGGGTTA--G-TGCAG----TTT-GAGTGGGGTA-AT-----AG-GAGCACGGCAAAC--A
gi|9 : tAAAAAAA--TTTGGA-TA--GCTGCAA---TTTTTGAAT-GAGAAGGT-----AG-GAGTACGGCAAGC--AAGTTTCTTTTTAAGGAGGGCC-gacac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAATTATGAAATTATCTTATCATATCATAAATACAATAAATGTATATAATGTCTCCAAAATCTGAAAAAGAAAAGAAAAAGAATTTGATCAGACAACTGTTTTGATGGGTGGGTAGAAAACAAACAATATATAAATTTTGGCAT
Unaligned ( gi|13 ): ATATCATACACATATTATGTGCAATAGCCTAGATTAAAATAGAAAAAAAAATGAGGAGGCAGTTATTTGATGGGTAGGTAAGAGACAGCCAGCAAATACTAATTTAATTTTGGCCTGAGATT
Unaligned ( gi|15 ): TTCAATTCTAGTCATGTCACATTAAAATAATAAGTAATGTTTGTTTACCCTTTGATCCTAGTTTTCAAAATTGTGTAGGTGAGGTTGTGTTTTTTTTTATAAAAATTACAGAC