lowQualScore : 111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 44444444444444 99999999999999999999999999999999999999 33 22 1 1 1 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 2222 22222 1111 333333333333333333333333333333333333333 111 11 1 1111111111 22222 111111 2222222222222 111 1111 111 1 1 11111 33333333 22222 777777777777777777777777777777777777777777777777777777777 1111 33333333333333 22222222222222 11 1111111 11 11 1111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 2 1111 1111 111 33333333
lowQualScore : 5 8 3 7 7 00 0 99999999999999 8 8 8 22222222222222222222222222222222222222 11 44 5 2 7 7 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 7 1 2222 77777 0000 777777777777777777777777777777777777777 3 000 3 6 11 2 4444444444 0 00000 0 444444 66 7777777777777 0 333 9 2222 888 3 2 666 0 4 0 3 4 99999 6 66666666 00000 99 6 111111111111111111111111111111111111111111111111111111111 1 99 6 6 4444 55555555555555 33333333333333 6 88 99 6666666 22 55 888 5 0000 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33 6 7 0 0000 9999 6 777 99999999
lowQualScore : . . . . . .. . .............. . . . ...................................... .. .. . . . . . .............................................................................................. . . . .... ..... .... ....................................... . ... . . .. . .......... . ..... . ...... .. ............. . ... . .... ... . . ... . . . . . ..... . ........ ..... .. . ......................................................... . .. . . .... .............. .............. . .. .. ....... .. .. ... . .... ......................................................................................... .. . . . .... .... . ... ........
lowQualScore : 4 5 5 3 3 33 3 66666666666666 0 0 0 33333333333333333333333333333333333333 00 00 0 5 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 0 9 1111 22222 8888 333333333333333333333333333333333333333 6 444 1 2 88 5 9999999999 8 88888 4 444444 99 5555555555555 2 111 6 9999 111 2 5 222 0 6 5 2 2 00000 0 22222222 00000 22 7 888888888888888888888888888888888888888888888888888888888 0 22 7 7 2222 55555555555555 77777777777777 0 33 22 2222222 77 11 888 0 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00 7 3 0 3333 3333 0 555 55555555
consensus : CACTTATGCAAAGTCGAAACGAACAAACTAATAAATGC-NTTAGTGTTTTCGTTTC-G-ATAA-------GA-AA-AAA-AAAT---GA-AATATATCTCAAGTTNATCACAACNTACAACNATATGTTTCTAAGTTTAC-TAACTTATATGAAATNTGAAAAACTTTATTTCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACAAACATGTGTAAATAT-TATTATTTGAAAAGGCCAAGTATGT---TTAAATN-----------------TTT-G--CACTTATG---C-AAG-TCGAA--ACGAA-C-AAC-NAATAAATG---------TCTTG----GAGA------T--ATTTC-----AG------AAACA--TTAAANTATCAT-TGAAA-T-ATATGTNACCTTCTCGGCATAAATAATACGAAAAT---TATGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA----------------ATA----AC---GAAAC---N-AATGAT----------CA-ATGATAT--G-ATAATTGTGTTT-G----CGTG------CG------TGTACAT------GT------ATGTGTGTGGGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTGT----TAT----------------------ATAAA---T----------------------G------GT-------------CT--------TNA-TGGCCTATTGGAATTTTC-TGAATAAAAC-AT-TAT-TATATAT---TTCTACTTGACNCATGTA
Reference ( gi|2 ) : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC-CTTAATGTTTTCGTTTC---ATAA-------GA-AA-AAA-AAATCACGA-AATAT-TC---AGTTAA-AACAGCGGAATATAATATGTTTTTAAGTTTACGTAACTTATATGAAATGTGAAAAACATTAATTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACACACATGTGTAAATAG-TATTATTTGAAAAGGACAATTATGT---TTAAATT-----------------TTT-T--CACTTCTG---C-GAG-TCAAA--GCGAA-C-AAC-GAATATATG---------TCTTA----GAAA------T--ATTTC-----AG------AAACA--CTAAACTATGAT-TGAAA-T-ATATGTCACCTTCTCCGCACAAAAAATACGAAATT---TATAAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA----------------ACA----AC---GAAA----A-AATGATA--TGAAA-ACA-ATGATAT--G-ATAATTGTGTTT-G----CGTG------CG------TGTACAT------GT------ATGTGTGTGGGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTGT----TAT----------------------CTAAA---T----------------------A------GT-------------CT--------TT--TGGCTAATTGGAATTTTC-TTAAT-AAAC-AT-TAT-TACATGT---TTCT--TTA--ATATGTATT
gi|4 : CAATTATGCAAG-TCAAAACGAACAA-CAAATAAATGT-ATTGGTGTTCTTATTTC---
gi|3 : ccatcctgtgtgtgaggtgtggtttccatacagcccgaacaggcaaacatacacaagcatgtgtaaatattatcgtttgacaaggtcaagtatgtttaattgtttgCACTTATG-AAAGTCGAAACGAACAA-CAAATAAATAT-CTTAGTGTTTTTGTTTCTG-ATAA-------AA-AATGAA-ATATC---A-AATAgagattaattgcatgaacaatttatatatttggaaatatttcagaaaaaatctaaattatgtttgaaatatatatcaccttttctgcacaaattatacgaaacatatgaacgattgttctgattgtacgacattgaaataacgagatcaagcatatgataattgtgtttgcgcgcgtgttcatgtacatgtacatgaatgtatgtgggattgtatgcgtgtgtgttagtgcatatgtctgttttatatatttgtacaaatttccatgttctacttattgcaccatttggtttataaaatgtatcatgtatcctcaatggcctattgaaattcataaataaacgatatatatatatatatatactttattatacacatgtatg
gi|1 : tgtatgaatatcatttgaaaaggccaagtaaatttttgCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC-CTTGATGTTTCCGTTT-------G-------GA-AA-AAA-AAATGAAAATAATATATCTCAAGTTCA-CACAACG------CATATGTTTTTA--TTTG---AACTTAcaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|8 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT-ATTAGTGTTTTCGTTTCT--ACAACTTGTGTGATAA-GGA-AAAT---GA-AATAT-TC---AGTTAATCACAACTTACAACGATATGTTTCT-AGTTTACATAACTTTTAT-AAATTTGAAAAACacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagATTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC-TTTAATGGTTTCGTTTCAAGATAA-------GA-AA-AAATAAAgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|6 : ATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTATGTTTTCGTTTCGAAATAA-------GA-AA-AAA-Aactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|6 : taGTTTATTTAACTTATATGAAATGTGAAAAACTTTATTTCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACAAGCAGGTGTAAATAC-TATTATTTGAAAAGGCCAAATATGT---GTAAATG-----------------TTT-G--CACTTATG---C-TAG-TCAAA--ACGAA-C-AAC-AAATAAATG---------TCTTGTTTCGAGA------T--AT--------AA------AAAGA--TTTAACTATTATATGACA-TAATATGTtgtttatttaacttatatgaaatgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|10 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACATGCAGGTGTGAATAT-TATTATTTGAAAGTGCTAAGTATAC---ATAAATG-----------------TTT-G--CACTTATG---C-AAG-TCTAA--ATGAA-C-AAT-TAATAAATG---------TCTTA----Gtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|9 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACAAACATGTTTAAATAT-TATCATTTTAG---------TATGT---TTAAATTGTTGCATAATGACTATGTTT-TAGTATTCTTGTTTC-GAG-AAAAATTGCAAGCC-AACAGTTTATATA---------TTTT-----GAAA------T--ATTTC-----AG------AAACA--CTAAATTATAAT-TGAAA-T-ATATATAAC---CTCCGCATAAtgttcttgtttcaagatataaaaaga
gi|1 : TACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACAAAAATGTGCAAA----TATTATTTGGAAAGGCCAA----GC------AGTT-----------------TTT-T-----------------G-TCAAA--TCGAA-C-AAT-AAATAAATA---------TCTttatgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACAAACATGTGTAAA----TATTAGTGGAAAAGGCCAAATATGT---TAAAGTT-----------------TTA-T--CACTTACG---C-AAATTCGAA--ATGAA-CAAAC-TAATAAATG---------CCTT-------GA------T--GTTTCCGTTTGG------AAAAA----AAA--ATGA----AAA-TAATATATCagtgatttagtttccagata
gi|19 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCACtcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|4 : CCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACAAGCATGTGTAAATAT-TATCGTTTGACAAGGTCAAGTATGT---TTAATTG-----------------TTT-G--CAATTATG---C-AAG-TCAAA--ACGAA-C-AAC-AAATAAATGTATTGGTGTTCTTATTTCGAGA------TTAATTGC-----AT------GAACAATTTA---TATATT-TGGAA---ATATTTCA--------G---AAAAAAT-CTAAATTATGTTTGAAATATATATCACCTTTTCTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG----ACATTGAAA----T-AACGAGA--T------CA-AGCATAT--G-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACAT------GTACATGAATGTATGTGGGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTGG----TTT----------------------ATAAAATGT----------------------ATCATGTAT-------------CC--------TCAATGGCCTATTGAAA--TTCATAAAT-AAACGATATATATATATATATATACT--TTA--TTAT
gi|16 : CATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACGAACCTGTATAAA----TATTAACTAAATAGTCC----ATGTGAGTTAAATA-----------------TTT-TAGCA-----------AAA-TCGAA--ACAAA-C-AAacacatgtatg
gi|11 : ATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACAGTCAGGTGTAAAAAC-TATGATTTGAAAAGG-----TACGT---TTAAATG-----------------TTT-G--CACGTATG---C-AAG-TCAAA--ACGAA-C-AAT-AAATA-A-G---------TCTTA----GTGACCTTTTT--TTTTT-----AGATATAAAAATA--TTTAACTATCATATGACATT-ATATGTatta
gi|5 : tCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT------ACATGTGTAAATAT-TATTATTTGAAAAGGCCAAtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|7 : ttgCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT------ACATGTGTAAATAT-TATTATTTGAAAAGGCCAAcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|8 : tttgACATATATAAATAAATATTATT-GAAAATACCAAGTATGT---TTGAATG-----------------TTTAG--CACTTATG---CAAAG-TCAAA--ACGAG-CAAAC-TAATAAATA---------TATTA----Gcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|3 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagTGTATGAATA----TCATTTGAAAAGGCCAA----GT-----AAATT-----------------TTT-G--CACTTATG---A-AAG-TCGAA--ACGAA-C-AAC-AAATAAATA---------TCTTA----Gtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|5 : CAAGTTTGT---TTAAATT-----------------TTT-G--CACTT-------------------ACGAA-C-AAC-AAATA-ATG---------TCtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgA-C-AGT-TAATATAT------------TTG----TAAA------T--ATTTC-----AG------AAACA--TTAAAGTATCAT-TTAAA-G-AT--GTAACCTTCTCAGCATAAATAATACAAAAAT---TATGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA----------------ATA----AC---TAAAC---C-AATGAT-------------ATGATAT--G-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACAT------GT------ATGTATG-GGGTaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|7 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-C-AGT-TAATATAT------------TTG----TAAA------T--ATTTC-----AG------AAACA--TTAAAGTATCAT-TTAAA-G-AT--GTAACCTTCTCAGCATAAATAATACAAAAAT---TATGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA----------------ATA----AC---TAAAC---C-AATGAT-------------ATGATAT--G-ATAATTGTGTTT-G----CGTG------CA------Tgccgttttactatttaacctc
gi|3 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgTATATG---------T-TTG----GAGA------T--ATTTTTAAA-AA------AAATG--CTAACTTATCAC-TGAAA-T-ATATGTCACCTTTTCGTCACAAATAATACGATAAT---TATGAAACAT--------TGTTCTG-----ATTATATG--GCAC-TGAA----------------ATG----AC---AAAG----ACAATG------------------ATAT--G-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACAT------GT------ATGGGTTTGTGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTGT----TAT----------------------ATA
gi|12 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTTTG-----ATAATATG--ACAT-TGAA----------------ATA----AC---GAAA----A-----------------CA-ATGATAT--G-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCACATGT------A--TGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTGT----TAT----------------------ATAAA---TTGTATCATGTTGTATCCTCAAGG------GT-------------CT--------TA--TGGCCTATTGGAATTTTT-TTAAT-AATC-AT-TAT----ATAT---TTctgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|9 : TTATAT---ATTT-TGAA----------------ATATTTCA----GAAACACTA-AATTATAATTGAAATATATATAACCTCCGCATAATTATGTTTTG----CTTG------CG------TGTACAT------GA------ATGTGTGTTGGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTGT----TATATAAAGTATGTCATGTTGCATCCTCAA---T----------------------G------GT-------------CT--------TA--CGGTCTATTGGAATTTTC-TGAATAAAAC-A--TAT-AATATAT---TTCTACTTGACACATGTAgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|14 : taccatcatgtgtgcaagatatgactttcttagagtctgaacaggcaaacatacacaaacatgtttaaatattatcattttagtatgtttaaattgttgcataatgactatgttttagtattcttgtttcgagaaaaattgcaagccaacagtT------GT------ATGTGTGTGGGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTGT----TAT----------------------ATAAA---TTGTATCATGTTGTATTCTCAAAG------GT-------------CT--------TA--TGGCCTTTTGGAATTGTC-TTAAT-GAAC-GA-TATATATATAT---T
gi|15 : C--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATAT----------------------GTAAA---aaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|17 : gcgCATTTT-AATA---TAATTATTGCATCAT-TTGT----TAT----------------------ATAAA---T----------------------T------GTATCATGTTATGTCCTCAAGGTTATTA-TGGCCTATTGGAATTTTC-TGAATAAAAC-AT-TAT-TATATactaatatcatgctgtgttatcacaggacttatgaattattagatgtactgaataaatcaatatataatgaatat
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTGT----TAT----------------------ATAAA---T----------------------T------GTATCATGTTATGTCCTCAAGGTTATTA-TGGCCTATTGGAATTTTC-TGAATAAAAC-AT-TAT-TATA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATTAGAAGATGAGCATCATTGTGTTATTGAATGCAGTTTATAAAATCAGACAAGAGAAACACATATAAAGAAATATTATTGTAAAAAGCCAAGAAATTTTAAGTTTTGGCCCTATCTAATGCAAAGTCAAATTGAACAAATCAATGCTTTCGTTTTTTTAACCTTATGAAATAAGAAAAATGAAATACAATTGATAAAGATATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAGAAAAATTCAAT
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333 111 1111 66666666666666666666666666666666 2222 111 2222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222222222222222222222 222222222222222222 1111111111 1 1111 22222222 11111 6666666666666666666666666666666666666666666 1111 22222222222222 11111111111111 11 11 999999999999999999999999999999999999999999999999999999999999999 1 444444444
lowQualScore : 5 6 777 2 888 2222222222222222 8 4 888 4444 33333333333333333333333333333333 3 99 5 1111 000 1 1 777 1111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 777777 55 2 2 4 2 1 99 2222222222222222222222222222222 2 444 4 2 1 66666 1 3 777777777777777777 6666666666 888 66 0 1 4 0 0 777 6 1 6 6 7777 99999999 66666 99 6 99 5555555555555555555555555555555555555555555 5 2222 77777777777777 77777777777777 55 77 33 77 5 1 5 44 777 4 66 9999 777777777777777777777777777777777777777777777777777777777777777 5 3 55 77 1 7 000000000
lowQualScore : . . ... . ... ................ . . ... .... ................................ . .. . .... ... . . ... .... ............................................................................................... . ...... .. . . . . . .. ............................... . ... . . . ..... . . .................. .......... ... .. . . . . . ... . . . . .... ........ ..... .. . .. ........................................... . .... .............. .............. .. .. .. .. . . . .. ... . .. .... ............................................................... . . .. .. . . .........
lowQualScore : 4 2 999 2 888 0000000000000000 9 4 333 2222 00000000000000000000000000000000 5 22 7 3333 000 7 0 777 2222 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777777 66 3 7 7 0 9 00 4444444444444444444444444444444 5 111 7 4 9 22222 7 0 666666666666666666 6666666666 000 11 1 0 4 0 2 000 5 0 3 4 0000 00000000 77777 22 7 22 7777777777777777777777777777777777777777777 7 1111 66666666666666 66666666666666 77 99 66 99 7 4 7 66 888 4 11 4444 000000000000000000000000000000000000000000000000000000000000000 7 0 11 44 4 3 333333333
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAA-AAAT---GA----AATAT-TCTCAAGTTAA-CACAA----CNTANAACGATATGTTTC--TAAGTT-TAC-T-AAC---TTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGC-CAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------AAAC--AT--TAAANTATC-AT-TGAAA-T-ATATGTAACCTTCTCAGCATAAATAATACGAAAATTA----TGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA--AT-------A----ACGA---------AAC-AATGAT-------CAATGATATGATAATTGTGTTT-G----CGTG------CG------TGTACAT------GT------ATGTGTGTGGGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--T----TATATA----------------------AATTGTATCATGTTGTGTCCTCAA-G------GT---CTTTATGGCCTATTGGAATTTTC-TNAATAAAACAT-TAT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAACGAACAAACTAATAAATGC--NTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAA-AAAT---GA----AATATATCTCAAGTTNATCACAA----CNTACAACNATATGTTTC--TAAGTT-TAC-T-AAC---TTATATGAAATNTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGC-CAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------AAAC--AT--TAAANTATC-AT-TGAAA-T-ATATGTNACCTTCTCGGCATAAATAATACGAAAATTA----TGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA--AT-------A----ACGA---------AACNAATGAT-------CAATGATATGATAATTGTGTTT-G----CGTG------CG------TGTACAT------GT------ATGTGTGTGGGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--T----TATATA----------------------AAT----------------------G------GT---CTTNATGGCCTATTGGAATTTTC-TGAATAAAACAT-TAT-TATATATTTCTACTT-----GACNCATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGC-CAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA---A-AA-C
gi|1 : gtggTC--G--ATAT-------GA-AAAAC-A--TC--GA----CCTAT-TCT---GTTAAACACAG----TTGAAAATAATAAGTTTC---AAGTT-AACAT-AAC---TTATATGAAATGTTAAGATTTTTTTTTTATTCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGC-CAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--atcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAAA-AAAT---GAAAATAATATATCTCAAGTTCA-CACAA----CG------CATATGTTTT--TA--TT-TG----AAC---TTAcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGC-CAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAAAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGC-TAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAGA-tgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG------GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAAAAT--AT--TTAACTATC-ATATGACATT-ATATGT
gi|12 : tTTTG-----ATAATATG--ACAT-TGAA--AT-------A----ACGA---------AA------A--------CAATGATATGATAATTGTGTTT-G----CGTG------CG------TGTACATGCACATGT------A--TGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--T----TATATA----------------------AATTGTATCATGTTGTATCCTCAAGG------GT---CTT-ATGGCCTATTGGAATTTTT-TTAATA----AT-CAT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGC-CAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGAA-AAAT---GA----AATA-----CAA-TTGATAAAGATATGTTTATTTCGATATGTT----TAAGCC-TAT-T-------TT-TATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatT------GT------ATGTGTGTGGGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--T----TATATA----------------------AATTGTATCATGTTGTATTCTCAAAG------GT---CTT-ATGGCCTTTTGGAATTGTC-TTAAT-GAACGA-TATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTG--TATTATATGTA----------------------AAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTC-CATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-actaatatcatgctgtgttatcacaggacttatgaattattagatgtactgaataaatcaatatataatgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--T----TATATA----------------------AATTGTATCATGTTATGTCCTCAA-G------GT---TATTATGGCCTATTGGAATTTTC-TGAATAAAACAT-TAT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--T----TATATA----------------------AATTGTATCATGTTATGTCCTCAA-G------GT---TATTATGGCCTATTGGAATTTTC-TGAATAAAACAT-TAT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAAA-AAATCACGA----AATAT---TCA-GTTAA-AACAG----CGGAATATAATATGTTTT--TAAGTT-TACGT-AAC---TTATATGAAATGTGAAAAACATTAATT----CCAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGA-CAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------AAAC--AC--TAAACTATG-AT-TGAAA-T-ATATGTCACCTTCTCCGCACAAAAAATACGAAATTTA----TAAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA--AC-------A----ACGA---------AA-AAATGATATGAAAACAATGATATGATAATTGTGTTT-G----CGTG------CG------TGTACAT------GT------ATGTGTGTGGGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--T----TATCTA----------------------AAT----------------------A------GT---CTTT-TGGCTAATTGGAATTTTC-TTAAT-AAACAT-TAT-TACATGTTTCT--TT-----AA--TATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGC-CAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTCTGAT------AAAA--AA--TGAAATATC-Att
gi|3 : CACTTATG-AAAGTCGAAACGAACAA-CAAATAAATAT--CTTAGTGTTTT---TGTTTCT-G--AT--------------AAA-AAAT---GA----AATA----TCAAAT-----ACAA-----ATGCATCTAAA---TTCAATAAATTGTAT-T-AACAGTTTATATG---TTTGGAGA----TATTT----aatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttg-----TATATGT-TTG----GAG---A------TATTTTTAAA------AAAA--ATGCTAACTTATC-AC-TGAAA-T-ATATGTCACCTTTTCGTCACAAATAATACGATAATTA----TGAAACAT--------TGTTCTG-----ATTATATG--GCAC-TGAA--AT-------G----ACAA---------A------GA--------CAATGATATGATAATTGTGTTT-GCAACCGTGTC----CA------TTTACAT------GT------ATGGGTTTGTGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--T----TATAT-----------------------ACT----------------------G------TTAC-TTTTATGGTCCGTTttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGT-CAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTC---G------AGATTAAT--TGCATGAACAAT-TTATA-T-ATTTGGAAATATTTCAG---AAAAAATCT--AAATTATGTTTGAAATATATATCACCTTTTCTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACGACATTGAAATAACGA--GAT-------CAAGCATATGATAATTGTGTTT-G----CGCG------CGTGTTCATGTACAT------GTACATGAATGTATGTGGGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTGGTT----TATA-A----------------------AAT----------------------GTATCATGTATCCTCAATGGCCTATTGAAA--TTCATAAATAAACGATATATATATATATATATACTTTATTATACACATGTAttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGC-CAAtg
gi|5 : ttgGGCGCAAGTTTGTTTAAATTTTT--GCAC-----T-T----------------------------ACGAA---C-AA-CAAA-----TAAcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|5 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------AAAC--AT--TAAAGTATC-AT-TTAAA-G-AT--GTAACCTTCTCAGCATAAATAATACAAAAATTA----TGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA--AT-------A----ACTA---------AACCAATGAT---------ATGATATGATAATTGTGTTT-G----CGTGCATGTTCA------TGTACAT------GT------ATGTATG-GGGTtgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAAAA-Agccgttttactatttaacctc
gi|6 : taGTT-TAT-TTAAC---TTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGC-CAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------AAAG--AT--TTAACTATT-ATATGACA-TAATATGTtgtttatttaacttatatgaaatgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGC-CAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgGGCGCAAGTTTGTTTAAATTTTT--GCAC-----T-T----------------------------ACGAA---C-AA-CAAA-----TAAcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|7 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------AAAC--AT--TAAAGTATC-AT-TTAAA-G-AT--GTAACCTTCTCAGCATAAATAATACAAAAATTA----TGAAATAT--------TGTTCTG-----ATTATATG--ACAT-TGAA--AT-------A----ACTA---------AACCAATGAT---------ATGATATGATAATTGTGTTT-G----CGTG------CA------Ttgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATAC-CAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGGA-AAAT---GA----AATAT-TC---AGTTAATCACAA----CTTACAACGATATGTTTC--T-AGTT-TACAT-AAC---TTTTAT-AAATTTGAAAAACtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCAACCTGTGTTTGAGATA-------------AAACTGAACA----AACGTACACA-A--------GTGCAAATAT-CA-TATTgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagcacttatgcaaagtcaaaacgagcaaactaataaatatattagtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT-----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------AAAC--AC--TAAATTATA-AT-TGAAA-T-ATATATAACCTCC---GCATAATTA
gi|9 : ATAATTATGTTTTG----CTTG------CG------TGTACAT------GA------ATGTGTGTTGGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--T----TATATAAAGTATGTCATGTTGCATCCTCAAT----------------------G------GT---CTT-ACGGTCTATTGGAATTTTC-TGAATAAAACA--TAT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222 1 222 1111 333 1 33333333333333 2222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1111 1111111111 222222222222222222 1111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 222 4444444
lowQualScore : 0 1 1 888 4 000 7777777777777777 0 5 222 7777 88 000 6 99999999999999 44444 5555 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 5555555555 888 55 1 99 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 1 4 000 222 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . ... . ... ................ . . ... .... .. ... . .............. ..... .... . ...................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .......... ... .. . .. . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . . ... ... . . . . .. .. .. . . .......
lowQualScore : 4 0 4 333 0 000 6666666666666666 0 0 000 0000 88 888 0 88888888888888 66666 3333 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 7777777777 777 55 0 55 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 7 4 777 111 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAA-AAATC--GA----AATAT-TCTCAAGTTAA-CACAACGNANA---A---CGATATGTTTCTAAGTTTACGT-AACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------AAAC--AT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAA-AAAT---GA----AATAT-TCTCAAGTTAA-CACAACNTANA---A---CGATATGTTTCTAAGTTTAC-T-AACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------AAAC--AT--TAAANTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTGTCCTC-A-A-GGTCTTTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG-------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAAC-A--TC--GA----CCTAT-TCT---GTTAAACACAGTTGAAA---A---TAATAAGTTTC-AAGTTAACAT-AACTTATATGAAATGTTAAGATTTTTTTTTTATTCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAAA-AAAT---GAAAATAATATATCTCAAGTTCA-CACAACGC------------ATATGTTTTTA--TTTG----AACTTAcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAAAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAGA-tgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAAAAT--AT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGGTCTTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGAA-AAAT---GA----AATA-----CAA-TTGA-TA-AAGATATGTTTATTTCGATATGTT--TAAGCCTAT-T----TT-TATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAAA-AAATCACGA----AATAT-TC---AGTTAA-AACAGCGGAAT---A---TAATATGTTTTTAAGTTTACGT-AACTTATATGAAATGTGAAAAACATTAATT----CCAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------AAAC--AC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTCTTT-TGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTCTGAT------AAAA--AA--TGAAATATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------AAAA--ATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-A-C-GGGTATTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTC---G------AGATTAAT--TGCATGAACA-AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------AAAC--AT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAAAA-Agccgttttactatttaacctc
gi|6 : taGTTTAT-TTAACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------AAAG--AT--TTAACTATT--ATATGACA-TAATATGTtgtttatttaacttatatgaaatgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------AAAC--AT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGGA-AAAT---GA----AATAT-TC---AGTTAATCACAACTTACA---A---CGATATGTTTCT-AGTTTACAT-AACTTTTAT-AAATTTGAAAAACtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCAACCTGTGTTTGAGATA-------------AAACTGAACA----AACGTACACA-A--------GTGCAAATAT-CA-TATTgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagcacttatgcaaagtcaaaacgagcaaactaataaatatattagtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------AAAC--AC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 22222 1111111 1 333 4444 1 11111111 1111 11111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 1 888 4 000 33333 6666666 0 66 5 111 0 8 1111 0 6 55555555 7777 88888 88 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . ... . ... ..... ....... . .. . ... . . .... . . ........ .... ..... .. . ...................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 4 333 0 000 11111 2222222 0 99 0 000 8 0 2222 6 0 22222222 0000 66666 88 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--A-AAATC--GAAATAT-TCT--AGTTAA-CACAACTGANAATGATATG----TTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--A-AAATC--GAAATAT-TCTCAAGTTAA-CACAACGNANAACGATATG----TTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAA--C-A--TC--GACCTAT-TCT---GTTAAACACAGTTGAAAATAATAAG----TTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATTTTTTTTTTATTCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTTG--G--A-AA-------AA-AAAATGA-AAAT-----AATATATCTCAAGTTCA-CACAACGC------ATATG----TTTT--TA--TTTG---A-ACTTAcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAA--ATAAAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAG--A-tgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGA--A-AAAT---GAAAT----------------ACAATTGATAAAGATATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAA--A-AAATCACGAAATAT-TC---AGTTAA-AACAGCGGAATATAATATG----TTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACATTAATT----CCAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAAA--A-Agccgttttactatttaacctc
gi|6 : taGTTTATTTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTtgtttatttaacttatatgaaatgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGG--A-AAAT---GAAATAT-TC---AGTTAATCACAACTTACAACGATATG----TTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCAACCTGTGTTTGAGATA-------------AAACTGAACA----AACGTACACA-A--------GTGCAAATAT-CA-TATTgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagcacttatgcaaagtcaaaacgagcaaactaataaatatattagtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222 1 8888888888888888888888888 1111 2222 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 888 4 000 7777777777777777 0 3333333333333333333333333 0 1 7777 2222 2 6 2 2 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . ... . ... ................ . ......................... . . .... .... . . . . . ...................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 333 0 000 6666666666666666 0 0000000000000000000000000 6 0 0000 4444 2 7 5 5 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAAAAAT---GAAATATTC-AGTTAA-CA---CAACTGAAAATAATATG----TTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAAAAAATC--GAAATATTCTAGTTAA-CA---CAACTGANAATGATATG----TTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAACA--TC--GACCTATTCT-GTTAAACA---CAGTTGAAAATAATAAG----TTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATTTTTTTTTTATTCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAAAAAAT------------------------------GAAAATAATATA----TCTC---AAGTTCACACA-ACGCATA-----TGT------TTTTATTT----GAAC--------TTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAA-----AA-----CTAATTAA-TAATTCAACagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAGAtgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACAAA----TCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGAAAAAT---GAAATA----------------CAATTGATAAAGATATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAAAAAATCACGAAATATTC-AGTTAA-AA---CAGCGGAATATAATATG----TTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAACATTAATT----CCAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAAAAAgccgttttactatttaacctc
gi|6 : taGTTTATTTA-ACTTATATGAAATGTGAAAAACTTTATTT----CAAC-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTtgtttatttaacttatatgaaatgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGGAAAAT---GAAATATTC-AGTTAATCA---CAACTTACAACGATATG----TTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCAACCTGTGTTTGAGATA-------------AAACTGAACA----AACGTACACA-A--------GTGCAAATAT-CA-TATTgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagcacttatgcaaagtcaaaacgagcaaactaataaatatattagtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222 1 111 555555555555 222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 1 888 4 000 7777777777777777 0 777 1 555 5 3 555555555555 6 000 1 7777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . ... . ... ................ . ... . ... . . ............ . ... . .... ..................................................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 4 333 0 000 6666666666666666 0 888 4 777 1 0 222222222222 7 555 8 8888 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGAA-ATA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAACTGAAAATA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-ANNNNNNTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAA--CA--TC--GACCTATTCTGTTAAACACAGTTGAAAATA-ATAAGTTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATT----------------TTTTTTTTATTCAT-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAA--AAAAT---GAAA-----------------------ATA-ATATATCTC---AAGTTCACACA-ACGCATATG-----T------T----------------TTTATTT----GAA-C--------TTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAAAAC---TAATTAATAATTCAA-CAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAG--Atgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGA--AAAAT---GAAATA--CAATTGA-------TAAAGATATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAA--AAAATCACGAAATATTCAGTTAA-AACAGCGGAATATA-ATATGTTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------ATTAATT----CCA-C-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAA------------AAATGTTTATTTAA-C-----------TT-ATATG-------AA--------------ATGTGAAA-------AAC----------------TTTATTT----CAA-C-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTgccgttttactatttaacctc
gi|7 : taCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGG--AAAAT---GAAATATTCAGTTAATCACAACTTACAACG-ATATGTTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACGCAATATTAAATAAAATTTAACT----CAATT-AAGTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAACCTGTGTTTGAGATA-------------AAACTGAA----CAAACGTACACA-A--------GTGCAAATAT-CA-TATTtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222 1 111 3333333333333 2222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 1 888 4 000 7777777777777777 0 777 1 555 5 3 2222222222222 6 8 2222 2 6 1 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . ... . ... ................ . ... . ... . . ............. . . .... . . . . . ........................................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 4 333 0 000 6666666666666666 0 888 4 777 1 0 2222222222222 7 0 4444 2 7 0 5 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGA-A-A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGA-A-A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAA--CA--TC--GACCTATTCTGTTAAACACAGTTGA-A-AATA-ATAAGTTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATT----------------TTTTTTTTATTCAT-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAA--AAAAT---GAAA------------------------A-TA-ATATATCTC---AAGTTCACACA-ACGCATATG-----T------T----------------TTTATTT----GAA-C--------TTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAAAAC---TAATTAATAATTCAA-CAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAG--Atgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGA--AAAAT---GAAATA--CAATTGA-TAAAG-------A-TATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAA--AAAATCACGAAATATTCAGTTAA-AACAGCGGA-ATA-TA-ATATGTTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------ATTAATT----CCA-C-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAA------------AAATGTTTATTTAA-CTTATATGA-A-A-Tgccgttttactatttaacctc
gi|6 : taGTTTATTTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGG--AAAAT---GAAATATTCAGTTAATCACAACTTACA-A-CG-ATATGTTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACGCAATATTAAATAAAATTTAACT----CAATT-AAGTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAACCTGTGTTTGAGATA-------------AAACTGAA----CAAACGTACACA-A--------GTGCAAATAT-CA-TATTtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222 1 111 3333333333333 2222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 1 888 4 000 7777777777777777 0 777 1 555 5 3 2222222222222 6 8 2222 2 6 1 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . ... . ... ................ . ... . ... . . ............. . . .... . . . . . ........................................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 4 333 0 000 6666666666666666 0 888 4 777 1 0 2222222222222 7 0 4444 2 7 0 5 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGA-A-A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGA-A-A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtggTC--G--ATAT-------GA-AAAA--CA--TC--GACCTATTCTGTTAAACACAGTTGA-A-AATA-ATAAGTTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATT----------------TTTTTTTTATTCAT-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaaCACTTACGCAAATTCGAAATGAACAAACTAATAAATGC--CTTGATGTTTC---CGTTT---------G-------GA-AAAA--AAAAT---GAAA------------------------A-TA-ATATATCTC---AAGTTCACACA-ACGCATATG-----T------T----------------TTTATTT----GAA-C--------TTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGC--TTTAATGGTTT---CGTTTCAAG--ATAA-------GA-AAAAATAAAAC---TAATTAATAATTCAA-CAagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGT--CTTAGTGTTCT---TGTTTCAAG--ATAT-------AA-AAAG--Atgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGC--TTTCGTTTTTTTAACCTT-------ATGA-------AATAAGA--AAAAT---GAAATA--CAATTGA-TAAAG-------A-TATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGC--CTTAATGTTTT---CGTTTC-----ATAA-------GA-AAAA--AAAATCACGAAATATTCAGTTAA-AACAGCGGA-ATA-TA-ATATGTTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------ATTAATT----CCA-C-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTTTC--GAAATAA-------GA-AAA------------AAATGTTTATTTAA-CTTATATGA-A-A-Tgccgttttactatttaacctc
gi|6 : taGTTTATTTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTgtgaaaaactttatttcaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatccatgtgtgagatatgatattcttacagcctgtacaagcaaacatacacaagcaggtgtaaatactattatttgaaaaggccaaatatgtgtaaatgtttgcacttatgctagtcaaaacgaacaacaaataaatgtcttgtttcgagatataaaaagatttaactattatatgacataatatgttttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : taatgcaaaatcgaaaagaacaaactaataaatgctttttatgttttcgtttcgaaataagaaaaaaatCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATAT--ATTAGTGTTTT---CGTTTC--T--ACAACTTGTGTGATAAGG--AAAAT---GAAATATTCAGTTAATCACAACTTACA-A-CG-ATATGTTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACGCAATATTAAATAAAATTTAACT----CAATT-AAGTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAACCTGTGTTTGAGATA-------------AAACTGAA----CAAACGTACACA-A--------GTGCAAATAT-CA-TATTtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
blockSeqs : A A TTT A TAA TACAACTTGTGT T AAT A CAC A T TCACAACTTACA . T GATA A T A G A GCAATATTAAATAAAATTTAACTCAATTAAGTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A AA T T T T TA AATGACT TTT TATTCTTGTT TTG A GCC CAGTT G C AGTGACCTTTT TA ATATAAA TTGC GC CT CAA A TT AT . G G AGT TATGTTTG ATATCACC G AAAAAAAATG CACAA AA A CGATTGTTCTGATTGTACGACATTGAAATAACGAGATCA C T CAAC CGTGTTCA TACATGA . GT TT GT TA A T C AA TTC A TA GTA A A CA A T A T A CG TA TA A A TATTATA
blockSeqs : T A T G . AAGATAA T A A . T A AACAGCGGAAT . . TA G . G G A ATTAATTCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A AA T . T G A TATCTA CA T . A CT . A C GTTTCGAGA G ATAA T . CT C A TA AT . T T T TGTTT . T . . . . ACAACGAAAAAATGATATGAAAACA . . . CATGTTCA T . . . G . . C . C . . . . . . CG A T . G A . A . A A GA
blockSeqs : T A C G . AAGATAT . G A . T G CTTATATGAA . . A G . G G A TTTATTTCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T T T . C G . TT CA . . . TA . G C AGTGTTTT . ATT C . TT G . T AT . G G A T . G . . . . ATATATGTCACCTTTTCGTCACAA . . . TCCA T . . . . . . T . A . . . . . . AT . T . G A . A . .
blockSeqs : A A T A . GAAATAA . A A . T T TAAAG . . T T . T G . TTTATTTGAACTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G T G . A T . TT C . . . TT . G C GGTGTTCT . A A . GT C . T AT . G A A T . T . . . . TTATAATTGAAATATATATAACC . . . CG T . . . . . . T . A . . . . . . A . T . G A . T . .
blockSeqs : A . C G . ATGA . A A . . G . . A . . . . A C T . A A . GT C . . . TA . G T AGAAA . A A . CT C . T TT . G A A T . G . . . . ATAACTAAACCAATGAT . . . CA T . . . . . . T . T . . . . . . A . T . T A . T . .
blockSeqs : C . A . . ATAA . G . . . . . A T T . T T . TT C . . . CG . G C GGAGA . A C . GT T . T AT . G . A T . G . . . . ATAACTAAACCAATGAT . . . CG A . . . . . . C . C . . . . . . A . T . T A . T . .
blockSeqs : G . . . C G T . T T . TT C . . . CA . A C GTAAA . A G . TT C . G AT . . A T . . . . . . ATGACAAAGACA . C . . . . . . . . . . A . . T . .
blockSeqs : . A T T . T G . TT A . . . CA . G A GTAAA . A C . T A . G . . . C . . . . . . . . . . G . . . . .
blockSeqs : . A T T . T G . TT C . . . TT . G C GAAA . A C . C . . T . .
blockSeqs : . G T T . T G . TT C . . . CA . G A GA .
blockSeqs : . A C T . . T . . . . . . TT . A T
blockSeqs : . A T . . . . . . . . . . CT . A .
blockSeqs : . T . . . . . . . .
blockSeqs : . T . . . . . . .
blockSeqs : .
blockSeqCons : AAATAN********** *** TANAA******** A***** ** C*** CN* GGAGA************* A******** C*** CT T** AT *** A*** T*********** T******** ** **
originalCons : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTC--G--ATAA-------GA-AAAA--AAAAT---GAAATATTCAGTTAA-CACAGCTGA-A-A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
finalCons : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGC--CTTAGTGTTTT---CGTTTCAAATAN----------GA-AAAA--AAAAT---GAAATATTCAGTTAATANAA--------A-TA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACAA-----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATGC---AAG----------TCGAAACGAA---C-AACN-AA-----TAAATGTCTTGGAGA-------------TATTTC--AGA--------AAC---AT--TAAACTATC--AT-TGAAAT--ATATGTAACCTTC---TCAGCATAAATAATACGAAAA---TTAT-----------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGT--------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 88888888888888888888888888888888888888888888888888888888888888888888 2222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1111 1111111111 222222222222222222 111111111 222222222222 11111111 1111111111 11111 77777777777777777777777777777777777777777777777777777777 1111 22222222222222 222222222 11 11 111 4444444
lowQualScore : 0 1 1 0 8888 000 5 22222222222222222222222222222222222222222222222222222222222222222222 1 6 3 3333 2 6 1 2 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 777777 55 2 2 3 2 00 99999999999 0000 6666666666 0 444 5 555 66666 2 2 777777777777777777 88 999999999 8888 55 44 777 8 888 44 0 888 1 5 8888 444444444444 88888888 5 9999999999 11111 0 66 5 11111111111111111111111111111111111111111111111111111111 5 5 2222 77777777777777 111111111 77 55 77 33 77 5 1 5 44 777 4 66 777 0 4 4 888 8 1 4 1 1 66 66 66 8 7 1111111
lowQualScore : . . . . .... ... . .................................................................... . . . .... . . . . . ........................................................................................................................... . ...... .. . . . . .. ........... .... .......... . ... . ... ..... . . .................. .. ......... .... .. .. ... . ... .. . ... . . .... ............ ........ . .......... ..... . .. . ........................................................ . . .... .............. ......... .. .. .. .. .. . . . .. ... . .. ... . . . ... . . . . . .. .. .. . . .......
lowQualScore : 4 0 4 4 4444 000 7 33333333333333333333333333333333333333333333333333333333333333333333 7 7 5 7777 2 7 0 5 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 777777 66 3 7 7 1 44 77777777777 5555 5555555555 5 777 3 000 77777 0 1 555555555555555555 66 999999999 6666 55 00 111 0 777 11 2 888 4 3 0000 000000000000 11111111 6 4444444444 11111 1 99 0 55555555555555555555555555555555555555555555555555555555 0 7 1111 66666666666666 111111111 99 77 99 66 99 7 4 7 66 888 4 11 000 9 4 4 666 9 9 4 0 9 11 77 11 9 3 7777777
consensus : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGCCTT--AGTGTTTT---CGTT-T---CAA---ATANGA-AAAAAAAAT---GAAATATTCAGTTAA-------T-AAA------A------ATA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
Reference ( family-3460 ) : CACTTATGCAAAGTCGAAANGAACAAACTAATAAATGCCTT--AGTGTTTT---CGTT-T---CAA---ATANGA-AAAAAAAAT---GAAATATTCAGTTAA-------T-ANA------A------ATA-ATATGTTTC--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-AAGTATTTTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAGGCAAACATACACA-A----ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAGTATGTTTAAATNTTT--GCAC-----T-T---ATG--C-AAG----------TCGAAACGAA---C-AA-CNAA-----TAAATGTCTTG----GAG---A------TATTTC--AG------A--AA---CAT--TAAACTATC--AT-TGAAA-T-ATATGTAACCTTC---TCAGCATAAATAATACGAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---GAAA-C-----A---AT--GAT-------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATGC--G--TGTGT--T--A-GCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-A-GGTC-TTATGGCCTATTGGAATTTTC-TNAATAAA--ACAT-T--AT-TATATATTTCTACTT-----NACACATGTA
gi|1 : TTCTTACATCCGGATCAGGCGAATATACACACAGTTTACATGTGTAAATAG-TATTA---GAAA-AGGCCAAATATGTTTCAATATTTA-GCAC-----C-T---ACG--CAAAA----------TCGATATGAA------------------AAACATC-------GAC---C------TA-TTC--TG----------------T--TAAAC-ACA--GT-TGAAA---ATA-ATAAGTTTCAAGTTAACATAACTTATATGAAATG--TTA-------------AGATTT--------TTTT----------TTT-----ATT
gi|1 : gtgg---ATATGA-AAAACA--TC--GACCTATTCTGTTAAACACAGTT-GAA------A------ATA-ATAAGTTTC---AAGTTAACATA-ACTTATATGAAATGTTAAGATT----------------TTTTTTTTATTCAT-CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCATCCTGGAGGTGAGTTA--ACTTTTCTGACAGAATGAACAGGCGAACATATACA-A----ACATGTGTAAATAT-TAGTG---GAAA-AGGCCAAATATGTTAAAGTTTTA--TCAC-----T-T---ACG--C-AAAT---------TCGAAATGAA---CAAA-CTAA-----TAAATGCCTT-------G---A------TGTTTC--catctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatcacttacgcaaattcgaaatgaacaaactaataaatgccttgatgtttccgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|1 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgCACTTACGCAAATTCGAAATGAACAAACTAATAAATGCCTT--GATGTTTC---CGTT-T------------GGA-AAAAAAAAT---GAAA------------------------------------ATA-ATATATCTC---AAGTTCACACA-ACGCATATG-----T------T----------------TTTATTT----GAA-C--------TTAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACCATCCTGTGTGTGAGATATTA-TTTTCTTACAGCCTGAACAGGCAAATAAACACA-A----AAATGTGCAAA----TATTATTTGGAA-AGGCCAAGCA-GTTT-----TTT--------------------------G----------TCAAATCGAA---C-AA-TAAA-----TAAATATCTcgtttggaaaaaaaaatgaaaataatatatctcaagttcacacaacgcatatgtttttatttgaacttaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttaccatcctgtgtgtgagatattattttcttacagcctgaacaggcaaataaacacaaaaatgtgcaaatattatttggaaaggccaagcagttttttgtcaaatcgaacaataaataaatatctagtgatttagtttccagata
gi|10 : gtggttcttacatccggatcaggcgaatatacacacagtttacatgtgtaaatagtattagaaaaggccaaatatgtttcaatatttagcacctacgcaaaatcgatatgaaaaacatcgacctattctgttaaacacagttgaaaataataagtttcaagttaacataacttatatgaaatgttaagattttttttttattcatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaccatcctggaggtgagttaacttttctgacagaatgaacaggcgaacatatacaaacatgtgtaaatattagtggaaaaggccaaatatgttaaagttttatTTAAGCAAAATTGAAAAGAAGTAACTAATAAATGCTTT--AATGGTTT---CGTT-T---CAAG--ATAAG----AAAAAAT---AAAA---CTAATTAA-------T-Aagtgatttagtttccagata
gi|10 : aTACTATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACAAGCAAACATACACA-T----GCAGGTGTGAATAT-TATTATTTGAAA-GTGCTAAGTATACATAAATGTTT--GCAC-----T-T---ATG--C-AAG----------TCTAAATGAA---C-AA-TTAA-----TAAATGTCTTA----Gattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgcacttatgcaagtctaaatgaacaattaataaatgtcttagtgttcttgtttcaagatataaaaaga
gi|10 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTATGCAA-GTCTAAATGAACAA-TTAATAAATGTCTT--AGTGTTCT---TGTT-T---CAAG--ATATAA-AAAGAtgttcttgtttcaagatataaaaaga
gi|11 : attaagcaaaattgaaaagaagtaactaataaatgctttaatggtttcgtttcaagataagaaaaaataaaactaattaataattcaacaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactatcctgtgtgtgagatatgattttcttacagcctgaacaagcaaacatacacatgcaggtgtgaatattattatttgaaagtgctaagtatacataaatgtttgATCCTGTTTGTGAGATATGA-TTGTTTTACAGCTTGAACAAGCAAACATACACA-G----TCAGGTGTAAAAAC-TATGATTTGAAA-AG-----GTACGTTTAAATGTTT--GCAC-----G-T---ATG--C-AAG----------TCAAAACGAA---C-AA-TAAA-----TAA--GTCTTA----GTG---ACCTTTTTTTTTT--AGATATAAA--AA---TAT--TTAACTATC--ATATGACATT-ATATGT
gi|12 : tT----------TTG-----ATAATATG--ACAT-TGAA----------------ATA-AC---GAAA-------A-----------------CAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATGCAC------ATGTATGTGTCGGTTTGTATGCGTG--TGTGT--T--A-GAGCGTACGTGTGTTTTATTT-ATTTGTACACATTTT-CATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATCCTC-A-AGGGTC-TTATGGCCTATTGGAATTTTT-TTAATA------AT-C--AT-TATATATTTtttacaaaatgtgttaaagttatatacatgcaattattgcgcgggtcgggttcatctcgctacagacccattaaagggttctataacccttacggtagctaaaaa
gi|13 : CAGACA-AGAGA-A----ACACATATAAAGAAATATTATTGTAAA-AAGCCAAGAAATTTTAAGTTTTG--GCCC-----TATCTAATG--CAAAG----------TCAAATTGAA---C-A----AA-----TCAATGCTTTgatagcttagaaatggcttttggaaaacaattgtcaaactattt
gi|13 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatCTAATGCAAAGTCAAATTGAACA----AATCAATGCTTT--CGTTTTTTTAACCTTAT---GAA---ATAAG-----AAAAAT---GAAATA--CAATTGA-------T-AAA------G------ATATGTTTATTTCGATATGTTTAAGCCTATTTTTATGAAATATGAAAAcgtttttttaaccttatgaaataagaaaaatgaaatacaattgataaagatatgtttatttcgatatgtttaagcctatttttatgaaatatgaaaagaaaaattcaat
gi|14 : attagaagatgagcatcattgtgttattgaatgcagtttataaaatcagacaagagaaacacatataaagaaatattattgtaaaaagccaagaaattttaagttttggccctatTG--T------ATGTGTGTG--GGTTGGTGTGC--G--TGTGTGTT--A-GTGCGTATGTGTGTTATATTT-ATTTGTACAAATTTT-CATA---TACTTATTACACCAT-TTG--TTATAT---AAATT-GTATCATGTTGTATTCTCAA-A-GGTC-TTATGGCCTTTTGGAATTGTC-TTAAT-GA--ACGA-T--ATATATATATTgaaaaattcaat
gi|15 : GC--G--TGTGT--TTAA-GCGCGTATGTACATTGTATTTCATTTACATACATTTTAAATG---TAACTA-AGCACCGTATTGTATTATATGTAAAACTAATATCATGCTGTGTTATC-ACA-GGAC-TTATGAATTATTAG-ATGTAC-TGAATAAA--TCAA-T--A--TATAaaatcctataactggttgacattatgatatcctgcagatttgataaatg
gi|16 : gcCATCCTGTGTGTGAGATATAT-TTTTCTCAAAGTCTAAACAGGCTATTATACACG-A----ACCTGTATAAATAT-TA--ACT--AAATAGTCCATGTGAG-TTAAATATTTTAGCA-------------------AAA----------TCGAAACAAA---C-AA-atgaatat
gi|17 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATATatta
gi|18 : CATTTT-AATA---TAATTATTGCATCAT-TTG--TTATAT---AAATT-GTATCATGTTATGTCCTC-A-A-GGTTATTATGGCCTATTGGAATTTTC-TGAATAAA--ACAT-T--AT-TATA
gi|19 : TACCATCCTGTTTGCGAGATATGG-TTTTCCTTCAGTCTAAGCAGGAGAACATACTCA-
gi|2 : CAATTATGCAAAATTGAAAAGAACAAACTAATAAATGCCTT--AATGTTTT---CGTT-T---CA-----TAAGA-AAAAAAAATCACGAAATATTCAGTTAA-------A-ACA------GCGGAATATA-ATATGTTTT--TAAGTTTACGTA-ACTTATATGAAATGTGAAAAAC----------------ATTAATT----CCA-C-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCCTGTGTGTGAGATATGA-TTTTCTTACAGCCTGAACTGGCAAACATACACA-C----ACATGTGTAAATAG-TATTATTTGAAA-AGGACAATTATGTTTAAATTTTT--TCAC-----T-T---CTG--C-GAG----------TCAAAGCGAA---C-AA-CGAA-----TATATGTCTTA----GAA---A------TATTTC--AG------A--AA---CAC--TAAACTATG--AT-TGAAA-T-ATATGTCACCTTC---TCCGCACAAAAAATACGAAA-T--TTA----T-------AAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ACA-AC---GAAA-A-----A---AT--GATATGAAAACAATGATATG-ATAATTGTGTTT-G----CGTG------CG------TGTACATG--T------ATGTGTGTG--GGTTTGTATAC--G--TGTGT--T--A-GCGCGTATGTGTGTTTTATTT-GTTTGTACACATTTT-TATA---TAATTATTGCACCAT-TTG--TTATCT---AAAT-------------------------AGTC-TTTTGGCTAATTGGAATTTTC-TTAAT-AA--ACAT-T--AT-TACATGTTTCT--TT-----A--ATATGTAc
gi|3 : TGTATGAATAT-CATT---TGAAA-AGGCCAAGTA------AATTTTT--GCAC-----T-T---ATG--A-AAG----------TCGAAACGAA---C-AA-CAAA-----TAAATATCTTA----GTGTTTT------TGTTTC--TGATA---A--AA---AAT--GAAA-TATCAAAT-ACAAA-T-GCATCTAAA---T---TCA--ATAAATTGTATTAAC-AGTTTA----TATGTTTGGAGATAT--------TTTTAAAAAAAATGCTA-----ACT-TAT----CAC-TGAA----------------ATATAT---GTCA-CCTTTTC---GT--CAC-------AAATAATACG-ATAATTATGtt
gi|3 : -----TATATGT-TTG----GAG---A------TATTTTTAAA------A--AA---AATGCTAACTTATC--AC-TGAAA-T-ATATGTCACCTTT---TCGTCACAAATAATACGATA-A--TTA----T-------GAAACAT--------TGTT----------CTG-----ATTATATG--GCAC-TGAA----------------ATG-AC---AAA----------------GA--------CAATGATATG-ATAATTGTGTTT-GCAACCGTGTC----CA------TTTACATG--T------ATGGGTTTG--TGTTTGTGTGC--GTTTATGT--T--G-GCGCGTATGTGTGTTTTATAT-ATTTGTACATATTTT-CATG---TACTTATTGTACCAT-TTG--TTATAT---Aaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|3 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagttTATAT---AAAGT-GTATGTTGTAGTATCCTC-ACG-GGTA-TTATGGCTTTTTGGAA-TTTC-TTAATAAACGATAT-TTAAT-T-TATActgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaactatataaagtgtatgttgtagtatcctcacgggtattatggctttttggaatttcttaataaacgatatttaatttataaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|4 : tgtatgaatatcatttgaaaaggccaagtaaatttttgcacttatgaaagtcgaaacgaacaacaaataaatatcttagtgtttttgtttctgataaaaaatgaaatatcaaatacaaatgcatctaaattcaataaattgtattaacagtttatatgtttggagatatttttaaaaaaaatgctaacttatcactgaaatatatgtcaccttttcgtcacaaataatacgataattatgaaacattgttctgattatatggcactgaaatgacaaagacaatgatatgataattgtgtttgcaaccgtgtccatttacatgtatgggtttgtgtttgtgtgcgtttatgttggcgcgtatgtgtgttttatatatttgtacatattttcatgtacttattgtaccatttgttatatactgttacttttatggtccgttttaaaatatgcttctatatgtatccctatgagcctttagtctaaaactgcaacaacCCATCCTGTGTGTGAGGTGTGG-TTTCCATACAGCCCGAACAGGCAAACATACACA-A----GCATGTGTAAATAT-TATCGTTTGACA-AGGTCAAGTATGTTTAATTGTTT--GCAA-----T-T---ATG--C-AAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTATTG----GTGTTCT------TATTTCG-AG------ATTAATTGCA---TGAAC-A----AT-TTATA-T-ATTTGGAAATATT---TCAG---AAAAAATCT--AA-A--TTATGTTT-------GAAATATATATCACCTTTT----------CTGCACAAATTATACGAAACATATGAACGATTGTTCTGATTGTACG-ACATTGAAA-T-----A---ACGAGAT-------CAAGCATATG-ATAATTGTGTTT-G----CGCG------CGTGTTCATGTACATG--TACATGAATGTATGTG--GGATTGTATGCGTG--TGTGT--T--A-GTGCATATGTCTGTTTTATAT-ATTTGTACAAATTTC-CATGTTCTACTTATTGCACCAT-TTG--GTTTAT---AAAAT-GTATCA---TGTATCCTC-A----------ATGGCCTATTGAAA--TTCATAAATAAA--CGATAT--ATATATATATATATACTTTATTATACACATGTAaataaaacaataagattgaatttcgatacatttgtatatgtatttgatattct
gi|5 : CCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtg
gi|5 : ttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTGCATGTTCA------TGTACATG--T------ATGTATG-G--GGTcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcatgttcatgtacatgtatgtatggggtgccgttttactatttaacctc
gi|6 : ttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgATGCAAAATCGAAAAGAACAAACTAATAAATGCTTTTTA-TGTTTT---CGTT-T---C------------------------GAAATA---AG-------------AAA------A------A-A-AT------------GTTTATTTA-ACTTATATGAAATGTGAAAAAC----------------TTTATTT----CAA-C-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATCC-ATGTGTGAGATATGA-TATTCTTACAGCCTGTACAAGCAAACATACACA-A----GCAGGTGTAAATAC-TATTATTTGAAA-AGGCCAAATATGTGTAAATGTTT--GCAC-----T-T---ATG--C-TAG----------TCAAAACGAA---C-AA-CAAA-----TAAATGTCTTGTTTCGAG---A------TAT-----AA------A--AA---GAT--TTAACTATT--ATATGACA-TAATATGTgccgttttactatttaacctc
gi|7 : taCCTGTGTGTGAGATATGA-TTATTTTACAGCCTGAACAGGCAAACAT-----------ACATGTGTAAATAT-TATTATTTGAAA-AGGCCAAtttgttaaatgtgttaaaatgctattgtgcggtttccatctggatgacccgaccccttcagtcccattacgggttcataaacgggccatgttacggtgaaaaaa
gi|7 : tttgA---C-AG-TTAA-----TATAT---TTG----TAA---A------TATTTC--AG------A--AA---CAT--TAAAGTATC--AT-TTAAA-G-AT--GTAACCTTC---TCAGCATAAATAATACAAAA-A--TTA----T-------GAAATAT--------TGTT----------CTG-----ATTATATG--ACAT-TGAA----------------ATA-AC---TAAACC-----A---AT--GAT---------ATGATATG-ATAATTGTGTTT-G----CGTG------CA------Tcgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgacagttaatatatttgtaaatatttcagaaacattaaagtatcatttaaagatgtaaccttctcagcataaataatacaaaaattatgaaatattgttctgattatatgacattgaaataactaaaccaatgatatgatatgataattgtgtttgcgtgcat
gi|8 : tttgcctgtgtgtgagatatgattattttacagcctgaacaggcaaacatacatgtgtaaatattattatttgaaaaggccaacgccagtaaacaagaatacgagatagcctttatgtttattaaattcagcgttcaatgaacgaacaaatggagagaacaaaacaaaggggaaaaactcccacacgcacaatgtgtacgactactaaatgttcacaagtcaacggacactatatacatagagtggcgcaagtttgtttaaatttttgcacttacgaacaacaaataatgtcaaagtgttcttgttttaggataaatttcattgA-G----ACATATATAAATAAATATTATT-GAAA-ATACCAAGTATGTTTGAATGTTTA-GCAC-----T-T---ATG--CAAAG----------TCAAAACGAG---CAAA-CTAA-----TAAATATATTA----G
gi|8 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaCACTTATGCAAAGTCAAAACGAGCAAACTAATAAATATATT--AGTGTTTT---CGTT-TCTACAACTTGTGTGATAAGGAAAAT---GAAATATTCAGTTAA-------TCACAACTTACA------ACG-ATATGTTTC--T-AGTTTACATA-ACTTTTAT-AAATTTGAAAAACGCAATATTAAATAAAATTTAACT----CAATT-AAGTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAACCTGTGTTTGAGATA-------------AAACTGAA----CAAACGTACACA-A--------GTGCAAATAT-CA-TATTtgttttcgtttctacaacttgtgtgataaggaaaatgaaatattcagttaatcacaacttacaacgatatgtttctagtttacataacttttataaatttgaaaaacgcaatattaaataaaatttaactcaattaagtattttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccaacctgtgtttgagataaaactgaacaaacgtacacaagtgcaaatatcatatt
gi|9 : gaacgtaaatgtatcaaatgtactaaattagagatgaatatccttttatgtagttgatataatcatataagaaagacatatataaataaatattattgaaaataccaagtatgtttgaatgtttagTACCATCATGTGTGCAAGATATGA-CTTTCTTAGAGTCTGAACAGGCAAACATACACA-A----ACATGTTTAAATAT-TATCATTTT----------AGTATGTTTAAATTGTT--GCATAATGAC-T---ATGTTT-TAGTATTCTTGTTTCGAGAAAAATTGC-AAGCCAACAGTTTATATATTTT-----GAA---A------TATTTC--AG------A--AA---CAC--TAAATTATA--AT-TGAAA-T-ATATATAACCTCC------GCATAATTA
gi|9 : -A--TTT----T-------GAAATAT--------T--T----------CAG-----A------A--ACAC-TAAATT--------------ATA-ATT--GAAA-T-----ATATAT--AAC-------C-----TCCGCATAATTATGTTTTG----CTTG------CG------TGTACATG--A------ATGTGTGTT--GGTTTGTATGC--G--TGTGTG-T--AAGCGCGTATGTGCGTTTTATTT-ATTTGTACACATTTT-CATA---TAATAATTGCATCAT-TTG--TTATAT---AAAGT-ATGTCATGTTGCATCCTC-A-ATGGTC-TTACGGTCTATTGGAATTTTC-TGAATAAA--ACA--T--AT-AATATATTTCTACTT-----GACACATGTAtgttttgcttgcgtgtacatgaatgtgtgttggtttgtatgcgtgtgtgtaagcgcgtatgtgcgttttatttatttgtacacattttcatataataattgcatcatttgttatataaagtatgtcatgttgcatcctcaatggtcttacggtctattggaattttctgaataaaacatataatatatttctacttgacacatgta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTACTCGGGTGTAACCTATGGGGTGCCGTTTTACTATTTAACCT
Unaligned ( gi|21 ): GTTTACACATGTATGGGATGCCGTTTTACTATTTAACCT