lowQualScore : 111 1 11111 1111111 444444444444444444444444444444444444444 777777777777777777777777 11 11111 9999999999999999999999999999999999999999999999999999999 3333333333333333333333 1111 1 111
lowQualScore : 000 0 555 77 55555 6 1111111 7 33 666666 33 777777777777777777777777777777777777777 33 33 111111111111111111111111 2 777777 2 22 333 333 99 66666 0 3 3333333333333333333333333333333333333333333333333333333 2 777 2 1 22 4444444444444444444444 2 4 555 999 0000 6 999 5 2 4 3 77777 5555 1 5 2 777 333 4 000 4 8 8 2 6
lowQualScore : ... . ... .. ..... . ....... . .. ...... .. ....................................... .. .. ........................ . ...... . .. ... ... .. ..... . . ....................................................... . ... . . .. ...................... . . ... ... .... . ... . . . . ..... .... . . . ... ... . ... . . . . .
lowQualScore : 000 5 000 77 11111 6 7777777 4 00 888888 77 444444444444444444444444444444444444444 44 22 111111111111111111111111 1 888888 1 22 777 999 11 00000 2 9 3333333333333333333333333333333333333333333333333333333 0 000 1 8 88 5555555555555555555555 4 7 888 111 0000 2 222 7 8 7 0 00000 0000 9 1 2 000 999 0 111 1 9 8 0 1
consensus : CCTCTACT---GTTA---AACCANTTATN---CAACCTAAACC---TG-NCATNAAAAANAAT------AAGAA--A----CC-GAC-G--------GTT---TCTGN------NTC--TGA--TCAGAAA--CGTC-----------AAA----TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---TCCCCAAAACCGNCGAGCTCTGG---TG------NTN--CCA--AGAGCTCG--TC-TT----C--------CGG---AGCTCT-GG---TGTTACCA--AGAGCTC------GTC-TTCAGNNA----GC-TCT-GGT-ANTACCAAGAGCTCGTC-TTCA----ACGA--CCTCT-GGTGNTACCAAGAGCTCGTCATCT---G----CGAGCTCT-GGTA-N-TACCAAGAGTTC---ANCT--TCNCCGCGCAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( gi|1 ) : CCTCTACT---GTAA---AACCATTTATT---AAACCCAAACC---TG-TCATAAAAAATAAT------AAGAA--A----CC-GAC-A--------GTT---TCTGA------ACC--TGA--TCAGAAAA-CGTC-----------AAAG---TC-GG-----TGAACT-CGGGGAATGTCC-AGA---GT---TCACCAAAAGCGTCGAGCTCTGG---TG------GTT--CCA--AGAGCTTG--TC-TT----C--------CGG-T-AGCTCT-GG---TGTTACCA--AGAGCTC------GTC-TTCAGGTG----GC-TCT-GGT-GTTACCAAGAGCTCGTC-TTCA----ACTA--CCTCT-GGTGTTGCCAAGAGCTCGTCATCT---G----CGAACTAT-GGTA-A-TACCAAGAGTTC---ATCT--TCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|3 : CCTTTATT---GTTA---AGCAGTTTATT---ACACCTAAACC---TG-CCATTAAAAGCAAT------AAAAA--A----CC-GAC-G--------GTT---TTTTA------ACC--TGA--TCAGAAAA-CGTC-----------AAAG---TC-GG-----TGAAGT-CGGGGAATATCC-------------------------CGAGTTC--------------G----CCA--AAAGC--G-----------A--------CG----AGCTCT-GG---TGGTTCCA--ATAGCTC------GTC-TTCAGCGA----GC-TCT-GGT-GTTACCAAGGACTCGTC-TTCA----ACGA--GCTCT-GGTGTTACCAAGAGCTC---ATCT---G----CGAATTCT-GGTA-A-TACCAAGAGTTC---ATCT--TCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : CCTCTATT---GTTA---AGCCATTTATT---AAACCTAAACC---TG-CCATTAAAAGTAAT------c
gi|19 : tCCTCTATT---GTTA---AGCCATTTATT---AAACCTAAACC---TG-CCATTAAAAGTAAT------GAg
gi|4 : tCTCCACT---GTTA---AACC---TATTCTGAAACCTAAGCC---TG-CCAGTAAAACTTAT------AAACA--A----CA-GAC-G--------GTT---TCTGA------AAC--TGA--TCAGAAAAACGTC-----------AAAA---TC-GG-----TGAACT-CGGGGAATGTTC-------------------------CGAGTTCA------------------CCA--AAAGC--G--TC------------------G---AGCTCT-GG---TAGTGCCA--AGAGCTC------GTC-TTCTGCGG----GC-TCT-GGT-AATACCAAGAGCTCGTC-TTCT----GCGA--GCTGT-GGTAGTGACAAGAGCCCGTCTTCT---G----TGAACTCT-GTTG-T-TACCAAGAGTTC---CCCT--------CGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTG
gi|2 : TCTACT---GTTA---AACCCTTTATT---AAACCTAAGCC---TG-TCATTAAAAATAAT------AAAAA--A----A--GAC-G--------GTT---TCTGA------AAC--TGA--TCAGAAAA-CGTC-----------AAAG---TC-GG-----TGAACG-CGGGGAATGTCC-AGA---GT---TCA------------------------------------CCA--AAAGC--G--TC-C--------------------AGCTCT-GG---TGGTTCCA--AGAGCTC------GTC-TTCAGCTA----GC-TCT-GGC-ATTACCAATAGCTCGTC-TTCA----ACGA--CTTCT-GGTGTAACCAAGGGCTCGTCATCT---A----CGAACGCT-GGTA-A-TACAATGAGTTC---ATCT--TCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|9 : caTCTACTCCGGTAATTAAACCAATTATA---CATCCTAAACC---AA-ATATGAAACAAAAC------AAGAA--AAAT-CT-TAC-A--------------TCTAT------TTC--TAA--TAAGAAA------------------------TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---ACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCA--AAACCAT---------------------CGG----GCTCT-GG---TATTACCA--AGAG
gi|12 : ACT---GTTA---AACCATTTATT---CAACCTAAACC---TG-TCATAAAAAATAAT------AAGAA--A----CC-GAC-G--------GTT---TCTGG------ACC--TGA--TAAGAAAA-CGTC-----------------------------GAGCT-CTGGGGGT-TCCAAGA---GCTTGTCTTCAA------CTACCTCTGG---TG------TTA--CCA--AAAGCTCG--CC-AT----C--------TGC-G-AACTCT-GG---TAAAACCA--AGAGTTC------ATT-TTCAtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|5 : TAA---AACCTCTTATA---CAACCAAAACC---TAATCTTAAAAA-CAAT------AAGAA--A-------AAT-A---------TTAAATCTGT------TTC--TGA--TCAGAAA------------------------TC-TA-----CGAACT-CGGGGAAAGTTC-AGA---GT---TCTTCAAAACCGGAGAACTCAGGGAATG------TCT--C-----GAGTT----CC-TCAAAAC--------CGGAG-AGCTCG-GGGAATGTC-CC----GAACTCCCCAAAACC-ATCG---A----GC-TCT-GGT-AATACCAAGAGTTCGGT-TTCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : cattgttatA---AACTAACTATA---CAATCTAAACC---AA-ATATGAAACAAAAC------AAGAA--AAAAACT-GAC-A--------------TCTAT------TTC--TGA--TAAGAAA------------------------TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---TCCCCAAAACCATCGGGCTCTGG---TA------TTA--CCA--AGAGgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|8 : ttcaacaccagtaattA---AACCAACTATA---CAACCTAAACC---TA-ATATGAAACAAAAC------AAGAACAA----TCTGAC-A--------TTTA--TTT----------C--TGA--TAAGAAA------------------------TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---ACCCCAAAACCGGAGAACTCGGG----------------------GAA--TG--TC-------C--------CG----AGTTCC-----------CCA--AAA-----------CC-ATCAGGT--------TCT-GGT-ATTACCAAGAA-------TCCA----ACTA--Ctacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : tcaacaccagtaatacaatA---AACCAACTATA---CAACCTAAACC---AA-AAATGAAACAAAAC------AAGAA--AAAT-CT-GAC-ATCT-----ATT---TCTGATAAGAAATCGGCGAACTCGGAGAA-TGTCCCGAGTACCCTAAAA---CT-GG-----AGAACT-CGGGGAATGTCC-CGA---GT---TCCCCAAAACCATCTGGCTCTGG---TA------TTA--CCA--AGAtcagcagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|11 : acaccagtaattA---AACCAATTATA---CATCCTAAACCAAATA-TGAAACAAAACAAA------AAAAA--T----CT-TAC-A--------------TCTAT------TTC--TAA--TAAGAAA------------------------TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---ACCCCAAAACCGGAGAACTCGGG---GGAT----GTC--CC----GAGT-----TC-CC----CAAAACCATCGG----GCTCT-GG---TATTACCA--AGAGttccaactactcagcataaggctaa
gi|10 : actccggtaattA---AACCAACTATA---CAACCTTAACA---TA-ATATGAAACAAAAC------AAGAA--AAAT-CT-TAC-A--------------TCTAT------TTC--TAA--TAAGAAA------------------------TC-GG-----CGAACT-CGGGGAATGTCC-CGA---GT---ACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCA--AAACCAT---------------------CGG----GCTCT-GG---TATTACCA--AGAGtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|15 : acaccggtaattA---AACCTGTTACT---TAACCTAAACC-------------AAATTGTTCTCCCAAGAA--A----TC-GAT-T--------ACT---TCTGG------TCC--TGA--TCAGAAAC-CACC-----------AATT---TCTGGAATTCTGAATC-TGGAGTATATCC-AAAGACGC---TCA--AAAAGCGTCGGATTCTGG---Ttccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|18 : gtcacCAATTACT---TAACCGA---C---TA-CTATCAAATATAAA------AAAAA--A--------AT-A---------CT---TCTGG------TTC--CGG--TCAGAAA------------------------TC-GA-----CAAACT-TGGGGAGTGTCC-CGA---G
gi|6 : aattcaacaaccaaAACCAAAACC---TAATCTTAAAAA-CAAT------AAGAA--A-------AAT-ATTAAATATGTT---TC--------------TGA--TCAGAAA------------------------TC-TA-----CGAACT-CGGGGAATGTTC-CGA---GT---TCCTCAAAACTGGAGAACTCGGGGAATG------TCT--C-----GAGT-----TC-TTCAAAC--------CGGAG-AGCTCG-GGGAATGTT-C----AGAACTCCCCAAAACC-ATCGAG-------C-TCT-GGT-AATACCAAGAGTTCGGT-TTCc
gi|7 : cattggtattaaaacttcccatacACCCAAACC---TG-TCATTAAAAATAAT------AAGAA--A----TC-GAC-G--------GTT---TCTGA------ACC--TGA--TCAGAAAA-CGTC-----------AAAG---TT-GG-----TGAACT-CGGGGAATGTCC-CGA---GT---TCACCAAAAGCGTCGAGTTCTGG---CA------GTT--CCA--AGAGCTCG--TC-TT----C--------AGG-T-AGCTCT-GA---TGGTACCA--AGAGCTC------GTC-CTCAGCGA----TT-TCT-GGT-GTTACCAAGAGCTCGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : -GACGA--------GCT---CTTGG------AAC--TG---CCAGAA---C-TC-----------GACGCTTTT-GG-----TGAACT-CGGGACATTCCC-CGA---GT---TCACCAAtatctgcgccacgcaaggctggaaaaataaatctggccgctgctaaattgtgtgct
gi|2 : acccaaacctgtcattaaaaataataagaaatcgacggtttctgaacctgatcagaaaacgtcaaagA--CCAGAAGT-CGTT-----------GAAG---AC-G--------AGCTATTGGTAATG-CC-AGA---GC---TAGCTGAA---GACGAGCTCT-----TG------GAA--CCACCAGAGCTGGACGC-TT----T--------TGG-TGAACTCT-GG---ttcaggtagctctgatggtaccaagagctcgtcctcagcgatttctggtgttaccaagagctcgttatctgcgccacgcaaggctggaaaaataaatctggccgctgctaaattgtgtgct
gi|6 : catctactgttaaaccctttattaaacctaagcctgtcattaaaaataataaaaaaagacggtttctgaaactgatcagaaaacgtcaaagtcggtgaacgcggggaatgtTC-----------AAA----CC-GG-----AGAGCT-CGGGGAATGTTC-AGA---AC---TCCCCAAAACCATCGAGCTCTGG---TA------ATA--CCA--AGAGTTCG--GT-TT----C--------gtaaccaagggctcgtcatctacgaacgctggtaatacaatgagttcatcttcaccacgcaaggctggaaaaataaatctggccgctgctaaattgtgtgct
gi|4 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagaaatctacgaactcggggaatgttccgagttcctcaaaactggagaactcggggaatgtctcgagttct---TT-GG-----TGAACT-CGGAACATTCCC-CGA---GT---TCACCGAgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|16 : ctccactgttaaacctattctgaaacctaagcctgccagtaaaacttataaacaacagacggtttctgaaactgatcagaaaaacgtcaaaaAAAAGTAATGAACTCTGG---TG------TTA--CCA--AGAGCTCG--TCATT----G--------C-G-T-A-CTCT-GG---AAATACAA--AGAGCTC------ATG-TTCAaagcgtcgagctctggtagtgccaagagctcgtcttctgcgggctctggtaataccaagagctcgtcttctgcgagctgtggtagtgacaagagcccgtcttctgtgaactctgttgttaccaagagttcccctcgcaaggctagaaaaataaatctggcctctgccaaattgtgtgt
gi|12 : attAAAACGTCGAGCTCTGG---GG------GTT--CCA--AGAGCTTG--TC-TT----C--------AAC-T-ACCTCT-GG---TGTTACCA--AAAGCTC------GCC-ATCTGCGA----AC-TCT-GGT-AAAACCAAGAGTTCATT-TTCA----ccacgcaaggctggaaacaaaaatctgaccgctgctaaattgtgtgctc
gi|17 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagGAACTCTGG---TG------TTA--CCA--AGAGCTCG--CCATT----G--------CG----ACTTCT-GG---TAATACCA--AGAGTTC------ATG-TTCAccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|3 : aat-AACTCTTGG---TATTACCA---GAATTC------G-----CAGATGA---GC-TCTTGGT-AACACCA-GAGCTCG---TTGAAG--ACGAGTCCT-T-GGTAACACC-AGAGCTCG----CT---GAAGACGAGCTAT-TGGA-ACCACC-AGAGCTC---GTCccacggctggaaacataaatcgggccgctgctaaattgtgtgctc
gi|12 : cctttattgttaagcagtttattacacctaaacctgccattaaaagcaataaaaaaccgacggttttttaacctgatcagaaaacgtcaaagtcggtgaagtcggggaatatcccgagttcgccaaaagc-AGCTCT-GG---GGGTTCCA--AGAGCTT------GTC-TTCAACTA----CC-TCT-GGT-GTTACCAAAAGCTCGCC-ATCT----GCGA--ACTCT-GGTAAAACCAAGAGTTCATcatcttccccacgcaaggctagaaaattaaatctggccgctgctaaattgtgtgctc
gi|16 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtcg-AACTCT-GG---TGTTACCA--AGAGCTC------GTC-ATTGCGT-----AC-TCT-GGA-AATACAAAGAGCTCATG-TTCA----tttcaccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|17 : attaaaagtaatg-AACTCT-GG---TGTTACCA--AGAGCTC------GCCATT---GCG----ACTTCT-GGT-AATACCAAGAGTTCATG-TTC-----ACCA--CGGCT-GGccacgcaaggctggaaacaaaaatctgaccgctgctaaattgtgtgctc
gi|4 : aatgGCTCT------TGTCACTACCACAGCTC------G-----CAGAAGACGAGC-TCTTGGT-ATTACCA-GAGCCCG-----CAGAAGACGA--GCTCTTGGCACTACCA-GAGCTCGACGCTTTTGG----TGAACT-C-GGAACA-TTCCCCGAGTTC---ACCaaacataaatcgggccgctgctaaattgtgtgctc
gi|7 : ctccactgttaaacctattctgaaacctaagcctgccagtaaaacttataaacaacagacggtttctgaaactgatcagaaaaacgtcaaaatcTCACCA--AAAGC--------GTC------G-A----GT-TCT-GGCAGTT-CCAAGAGCTCGTC-TTCA----GGTA--GCTCT-GATGGTACCAAGAGCTCGTCCTCA---G----CGATTTCT-GGTG-T-TACCAAGAGCTCGTTATCT--GCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTccgtcttctgtgaactctgttgttaccaagagttcccctcgcaaggctagaaaaataaatctggcctctgccaaattgtgtgt
gi|13 : acccaaacctgtcattaaaaataataagaaatcgacggtttctgaacctgatcagaaaacgtcaaagttggtgaactcggggaatgtcccgagtG----GC-TCT-GGT-ATTACCAAGAG-------TACA----ACTA---CTCT-G
gi|12 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatcg----GC-TCT-GGG-GGTTCCAAGAGCTTGTC-TTCA----ACTA--CCTCT-GGTGTTACCAAAAGCTCGCCATCT---G----CGAACTCT-GGTA-A-AACCAAGAGTTC---ATTT--TCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|17 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtcgaC-TCT-GGT-GTTACCAAGAGCTCGCCATT------GCGA--CTTCT-GGTAATACCAAGAGTTCAT
gi|16 : aatgaaCTCT-GGTGTTACCAAGAGCTCGTCAT-T---G----CGTACTCT-GGAA-A-TACAAAGAGCTC---ATGT--TCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTgttcaccacggctggaaacataaatcgggccgctgctaaattgtgtgctc
gi|17 : attaaaagtaatgaaCTCT-GGTGTTACCAAGAGCTCGCCAT-T---G----CGACTTCT-GGTA-A-TACCAAGAGTTC---ATGT--TCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|17 : aatgaaCTCTTGGTATTACCAGAAG-TCGCAATG----G----CGAGCTCTTGGTA-A-CACCA-GAGTTC---ATc
gi|14 : aCATCT---G-------GCTCT-GGTA-T-TACCAAGATTCC---AACTACTCAGCA--TAAGGCTttcatgttcaccacggctggaaacataaatcgggccgctgctaaattgtgtgctc
gi|6 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaac----CGAGCTCT-GGTA-A-TACCAAGAGTTC---GGTT--TCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTGaa
gi|5 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagaaatctacgaactcggggaatgttccgagttcctcaaaactggagaactcggggaatgtctcgagttcttcaaaccggagagctcggggaatgttcagaactccccaaaaccat----CGAGCTCT-GGTA-A-TACCAAGAGTTC---GGTT--TCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTGtc
gi|13 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagaaatctacgaactcggggaaagttcagagttcttcaaaaccggagaactcagggaatgtctcgagttcctcaaaaccggagagctcggggaatgtcccgaactccccaaaaccat----CGGGCTCT-GGTA-T-TACCAAGAGTAC---AACT--ACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCGtc
gi|9 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccat----CGGGCTCT-GGTA-T-TACCAAGAGTCC---AACT--ACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCGtaa
gi|11 : tctactccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccat----CGGGCTCT-GGTA-T-TACCAAGAGTCC---AACT--ACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGtaac
gi|10 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccat----CGGGCTCT-GGTA-T-TACCAAGAGTCC---AACT--ACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCGcataa
gi|8 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatT-GGTA-T-TACCAAGAATCC---AACTACTCAGCA-G-AAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCGtaac
gi|21 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcaggttcAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTGtaa
Alignments
lowQualScore : 44444444444444444 8888888888 111 88888888888888888888888 111 2222222222
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 22 0 2 2222222222 444 66666 2 33 2 7777 3 1 88 1 7 222 1 66 66666666666666666666666 000 0 2 0 6666666666 1 5 1 1 1 444 1 2 1 0 5 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. .. . . .......... ... ..... . .. . .... . . .. . . ... . .. ....................... ... . . . .......... . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 00 9 5 5555555555 444 22222 5 44 5 5555 2 7 88 9 2 111 0 33 22222222222222222222222 888 5 6 1 3333333333 0 6 0 1 0 444 9 2 0 6 9 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAG-AAA--CG-C-AA-T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---NCCCCAAAACCGGNGAACTCNGGGAATGCCNCGAGCTCCCCAAAGCC-AT----C-G--G-AGCTCTGG---TATTACCAAGAGCTCGTC---TTCAGCGAGCTCTGGTGNTACCAAGAGCTCGTCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNNTCTGATCAG-AAA--CGTCAAA-T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---TCCCCAAAACCGNCGAGCTCTGGTGNTNCCAAGAGCTC------GTC-TT----CCG--G-AGCTCTGG---TGTTACCAAGAGCTCGTC---TTCAGNNAGCTCTGGTANTACCAAGAGCTCGTCTTCAACGACCTCTGGTGNTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTTCNCCGCGCAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAACCTGATCAG-AAAA-CGTCAAAGT---CGG-----TGAACTC-GGGGAATGTCCA--GAG-T---TCACCAAAAGCGTCGAGCTCTGGTGGTTCCAAGAGCTT------GTC-TT----CCG--GTAGCTCTGG---TGTTACCAAGAGCTCGTC---TTCAGGTGGCTCTGGTGTTACCAAGAGCTCGTCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAG-AAA----------T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---ACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAACC-AT----C----G-GGCTCTGG---TATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTTCTAATAAG-AAA----------T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---ACCCCAAAACCGGAGAACTCGGGGGATGTCCCGAGTTCCCCAAAACC-AT----C----G-GGCTCTGG---TATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGACCTGATAAGAAAA--CGT-----------------CGAGCTCTGGGG---GTTCCAAGAG-CTTGTCTTCAA------CTACCTCTGGTGTTACCAAAAGCTC------GCC-AT----CTGC-G-AACTCTGG---TAAAACCAAGAGTTCATT---TTCAataa
gi|12 : AGCTCTGGGGGTTCCAAGAGCTTGTCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtcgTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTTCTGATAAG-AAA----------T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---TCCCCAAAACCATCGGGCTCTGGTATTACCAAGAG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTTCTGATAAG-AAA----------T---CGG-----CGAACTC-GGAGAATGTCCC--GAG-T---ACCCTAAAACTGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAACC-AT----CTG-----GCTCTGG---TATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTCCTGATCAG-AAA--CCACCAA-TTTCTGGAATTCTGAATCT-GGAGTATATCCA--AAGAC---GCTCAAAAAGCGTCGGATTCTGGTaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCT
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTTCCGGTCAG-AAA----------T---CGA-----CAAACTT-GGGGAGTGTCCC--GAG-c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTGAAACTGATCAG-AAAA-CGTCAAAGT---CGG-----TGAACGC-GGGGAATGTCCA--GAG-T---TCACCAAAAGCGTCCAGCTCTGGTGGTTCCAAGAGCTC------GTC-TT----C------AGCT-----------------AGCT------------------CTGGCATTACCAATAGCTCGTCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT---TTTTAACCTGATCAG-AAAA-CGTCAAAGT---CGG-----TGAAGTC-GGGGAATATCCC--G----------------------AGTTC-------GCCAAAAGC--------GAC------------G-AGCTCTGG---TGGTTCCAATAGCTCGTC---TTCAGCGAGCTCTGGTGTTACCAAGGACTCGTCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCTGAAACTGATCAG-AAAAACGTCAAAAT---CGG-----TGAACTC-GGGGAATGTTCC--GAG-T---TC-------------------------ACCAAAAGC--------GTC------------G-AGCTCTGG---TAGTGCCAAGAGCTCGTC---TTCTGCGGGCTCTGGTAATACCAAGAGCTCGTCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAG---------TTCCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTTCTGATCAG-AAA----------T---CTA-----CGAACTC-GGGGAAAGTTCA--GAG-T---TCTTCAAAACCGGAGAACTCAGGGAATGTCTCGAGTTC--------C-TCAAAACCGGAG-AGCTCGGGGAATGTC-CC--GAACTCCCCAAAACCATCGAGCTCTGGTAATACCAAGAGTTCGGTTTCt
gi|5 : cattgttattaCGAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagaaatctacgaactcggggaaagttcagagttcttcaaaaccggagaactcagggaatgtctcgagttcctcaaaaccggagagctcggggaatgtcccgaactccccaaaaccatTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTTCTGATCAG-AAA----------T---CTA-----CGAACTC-GGGGAATGTTCC--GAG-T---TCCTCAAAACTGGAGAACTCGGGGAATGTCTCGAGTTC------TTCAAA----CCGGAG-AGCTCGGGGAATGTT-C--AGAACTCCCCAAAACCATCGAGCTCTGGTAATACCAAGAGTTCGGTTTCtc
gi|6 : cattggCGAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagaaatctacgaactcggggaatgttccgagttcctcaaaactggagaactcggggaatgtctcgagttcttcaaaccggagagctcggggaatgttcagaactccccaaaaccatACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---TCTGAACCTGATCAG-AAAA-CGTCAAAGT---TGG-----TGAACTC-GGGGAATGTCCC--GAG-T---TCACCAAAAGCGTCGAGTTCTGGCAGTTCCAAGAGCTC------GTC-TT----CAG--GTAGCTCTGA---TGGTACCAAGAGCTCGTC---CTCAGCGATTTCTGGTGTTACCAAGAGCTCGTtc
gi|7 : TCACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCAAGAGCTCGTCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtatctgcgccacgcaaggctggaaaaataaatctggccgctgctaaattgtgtgct
gi|8 : acccaaacctgtcattaaaaataataagaaatcgacggtttctgaacctgatcagaaaacgtcaaagttggtgaactcggggaatgtcccgagtTAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTTCTGATAAG-AAA----------T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---ACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAACC-AT----CAG-----GTTCTGG---TATTACCAAGA
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCatccaactactcagcagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAG-AAA----------T---CGG-----CGAACTC-GGGGAATGTCCC--GAG-T---ACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAACC-AT----C----G-GGCTCTGG---TATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
Alignments
lowQualScore : 44444444444444444 88888888888 11111 22222222222222222 22222222 11111
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 88 5 11111111111 444 777777 0 2 33 00000 1 0 1 1 3 1 3 7 77777777777777777 0 5 0 1 88888888 33 1 4 00000 1 1 0 2 3 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. .. . ........... ... ...... . . .. ..... . . . . . . . . ................. . . . . ........ .. . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 33 6 99999999999 444 111111 4 5 44 00000 5 5 8 0 0 0 9 1 55555555555555555 7 9 1 3 44444444 11 1 0 00000 3 0 6 2 6 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGTTTCTGATNAGAAA-----------T---CGG-----CGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTCCCGAGTTCCCCAAA-ACCATC-G--G-AG--CTCTGGTANTACCAAGAGCTCGTC---T---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA-C--G-CAA--T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TNCCCCAAAACCGGNGAACTCNGGGAATGCCNCGAGCTCCCCAAA-GCCATC-G--G-AG--CTCTGGTATTACCAAGAGCTCGTC---T---TCAGCGAGCTCTGGTGNTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAACCTGATCAGAAAAC--GTCAAAGT---CGG-----TGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGGTGGTTCCAAGAGCTT-------GTCTTCCG--GTAG--CTCTGGTGTTACCAAGAGCTCGTC---T---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA-----------T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAA-ACCATC-G--G--G--CTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA-----------T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTCCCGAGTTCCCCAAA-ACCATC-G--G--G--CTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGACCTGATAAGAAA-------A-------CGT-----CGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGGTGTTACCAAAAGCTC-------GCCATCTGC-G-AA--CTCTGGTAAAACCAAGAGTTCATT---T---TCAataa
gi|12 : CGAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTTCTGATAAGAAA-----------T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGGTATTACCAAGAG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTTCTGATAAGAAA-----------T---CGG-----CGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAA-ACCATC-T--G--G--CTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTCCTGATCAGAAA-CCAC-CAA--TTTCTGGAATTCTGAATCT-GGAGTATATCCAAAGA--CGCTCAAAAAGCGTCGGATTCTGGaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTt
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTTCCGGTCAGAAA-----------T---CGA-----CAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTG-----------AAA-C---------------------TGA--TC-AGAAAACGTC--------------AAAGTCGGTGAACGCGGGGAATGTCCAGAGTTCACCAAA-AGCGTC-C----AG--CTCTGGTGGTTCCAAGAGCTCGTC---T---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT--------TTTTAACCTGA------------------------------TC-AGAAAACGTC--------------AAAGTCGGTGAAGTCGGGGAATATCCCGAGTTCGCCAAAAGCGAC-----G-AG--CTCTGGTGGTTCCAATAGCTCGTC---T---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCT-----------GAAA-C----TGA--T---CAG-------AA-------AAACGTC--------------AAAATCGGTGAACTCGGGGAATGTTCCGAGTTCACCAAA-AGCGTC-G----AG--CTCTGGTAGTGCCAAGAGCTCGTC---T---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTTCTGATCAGAAA-----------T---CTA-----CGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTCTCGAGTTCCTCAAA-ACCG---GA-G-AG--CTCGGGGAATGTCCCGAACTCCCCAAAA---CCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTTCAGAGTTCTTCAAA-ACC----G--G-AGAACTCAGGGAATGTCTCGAGTTCCTC---AAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTTCTGATCAGAAA-----------T---CTA-----CGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTCTCGAGTTCTTCAA-----ACC-GGAG-AG--CTCGGGGAATGTTCAGAACTCCCCAAAA---CCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTTCCGAGTTCCTCAAA-ACT----G--G-AGAACTCGGG---------GAAT--GTC---T-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCAT---CGAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---T------CTGA------A-C--C-TGA--T---CAG-------AA--------AACGTC--------------AAAGTTGGTGAACTCGGGGAATGTCCCGAGTTC---------------------------------ACCAAAAGC--GTC------------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTTCTGATAAGAAA-----------T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAA-ACCATC-A--G--G--TTCTGGTATTACCAAGAATCCAAC---TAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA-----------T---CGG-----CGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAA-ACCATC-G--G--G--CTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
Alignments
lowQualScore : 44444444444444444 1111111111 3333333333333333333333333 22222 11111
lowQualScore : 1 444 11 1 1 1 1 33 99999999999999999 1 444 1 6666666666 1 2 2 3 7777777 1 2 4444444444444444444444444 1 1 88888 1 1 4 00000 1 1 0 2 2 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . .. ................. . ... . .......... . . . . ....... . . ......................... . . ..... . . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 444 44 0 0 0 0 77 99999999999999999 1 777 0 5555555555 5 7 9 3 7777777 9 1 7777777777777777777777777 9 7 44444 0 1 0 00000 3 0 6 2 3 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAATAAGAA--A----CC-GACGGTT---TCTGTTT---CTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCGT------C-G-G-AG--CTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAATAAGAA--A----CC-GACGGTT---TCTGTTT---CTGATNAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCAT------C-G-G-AG--CTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAATAAGAA--A----CC-GACAGTT---TCTGAAC---CTGATCAGAAAACGTCAAAGTCGGTGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGG---TG------GTTCC--AAGA-----GCTTGTCTTCC-G-GTAG--CTCTGGTGTTACCAAGAGCTCGTCT---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAACAAGAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCAT------C-G-G--G--CTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAACAAAAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTCCCGAGTTCCCCAAAA-----CCAT------C-G-G--G--CTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAATAAGAA--A----CC-GACGGTT---TCTGGAC---CTGATAAGAAA---------ACGTCGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGG---TGTT---A-----CCAAAAGCTCGCCAT------CTGCG-AA--CTCTGGTAAAACCAAGAGTTCATTT---TCAataa
gi|12 : CGAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAACAAGAA--AAAAACT-GACA------TCTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtattaccaagagtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAACAAGAA--AAAT-CT-GACA------TCTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCAT------C-T-G--G--CTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|16 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTaa
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAAAAAAA--A----AT--AC---T---TCTGGTT---CCGGTCAGAAA---------TCGACAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAATGAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAATAAAAA--A----A--GACGGTT---TCTGAAA---CTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAACGCGGGGAATGTCCAGAGTTCACCAAAA-----GCGT------C-C---AG--CTCTGGTGGTTCCAAGAGCTCGTCT---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAATAAAAA--A----CC-GACGGTT---T---TTTAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAAGTCGGGGAATATCCCGAGTTCGCCAAAA-----GCGA------C-G---AG--CTCTGGTGGTTCCAATAGCTCGTCT---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTATAAACA--A----CA-GACGGTT---TCTGAAA---CTGATCAGAAA-------------------------AACGTC--------------AAAATCGGTGAACTCGGGGAATGTTCCGAGTTCACCAAAA-----GCGT------C-G---AG--CTCTGGTAGTGCCAAGAGCTCGTCT---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAATAAGAA--A--------AATATTAAATCTGTTT---CTGATCAGAAA---------TCTACGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTCTCGAGTTCCTCAAAA-----CCG---------GAG-AG--CTCGGGGAATGTCCCGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTTCAGAGTTCTTCAAAA-----CC----------G-G-AGAACTCAGGGAATGTCTCGAGTTCCTCAAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAATAAGAA--A--------AATATTAAATATGTTT---CTGATCAGAAA---------TCTACGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTCTCGAGTTCTTCAAA---------C------C-G-G-AGAGCTCGGGGAATGTTCAGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTTCCGAGTTCCTCAAAA-----CT----------G-G-AGAACTCGGGGAAT-----------GTCT-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAATAAGAA--A----TC-GACGGTT---TCTGAAC---CTGATCAGAAA--------------------------ACGTC--------------AAAGTTGGTGAACTCGGGGAATGTCCCGAGTTC------------------------------------------ACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAACAAGAACAA----TCTGACA------TTTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCAT------C-A-G--G--TTCTGGTATTACCAAGAATCCAACTAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAACAAGAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTCCCGAGTTCCCCAAAA-----CCAT------C-G-G--G--CTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTCACAAACCTGTTACTTAACCTAAACCAAATTGTTCTCCCAAGAAATCGATTACTTCTGGTCCTGATCAGAAACCACCAATTTCTGGAATTCTGAATCTGGAGTATATCCAAAGACGCTCAAAAAGCGTCGGATTCTGGT
Alignments
lowQualScore : 44444444444444444 1111111111 33333333333333 22222 11111
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 2 444 0 5555555555 1 2 2 3 7777777 1 2 33 2 88888888888888 1 1 88888 1 1 4 00000 1 1 0 2 2 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. . ... . .......... . . . . ....... . . .. . .............. . . ..... . . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 0 444 9 8888888888 5 7 9 3 7777777 9 7 77 1 11111111111111 9 7 44444 0 1 0 00000 3 0 6 2 3 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTT---CTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGTTT---CTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAAC---CTGATCAGAAAACGTCAAAGTCGGTGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGG---TG---------GTTCC--AAGAGCTTGTCTTCCG-GTAGCTCTGGTGTTACCAAGAGCTCGTCT---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGAC---CTGATAAGAAA---------ACGTCGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGG---TGTTACCAAAAGCTCGCC--ATCT--GC-------G-AACTCTGGTAAAACCAAGAGTTCATTT---TCAataa
gi|12 : CGAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtattaccaagagtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----T-G--GCTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTC---CTGATCAGAAA---------CCaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTaccaatttctggaattctgaatctggagtatatccaaagacgctcaaaaagcgtcggattctggt
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTT---CCGGTCAGAAA---------TCGACAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTGAAA---CTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAACGCGGGGAATGTC-CA--GAGTTCACCAAAAGC--GTC----C---AGCTCTGGTGGTTCCAAGAGCTCGTCT---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT---T---TTTAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAAGTCGGGGAATATC-CC--GAGTTCGCCAAAAGC--GAC----G---AGCTCTGGTGGTTCCAATAGCTCGTCT---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCTGAAA---CTGATCAGAAA-------------------------AACGTC--------------AAAATCGGTGAACTCGGGGAATGTT-CC--GAGTTCACCAAAAGC--GTC----G---AGCTCTGGTAGTGCCAAGAGCTCGTCT---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTT---CTGATCAGAAA---------TCTACGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTC-TC--GAGTTCCTCAAAACC--G------GAG-AGCTCGGGGAATGTCCCGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTT-CA--GAGTTCTTCAAAACC--G------GAG-AACTCAGGGAATGTCTCGAGTTCCTCAAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTT---CTGATCAGAAA---------TCTACGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTC-TC--GAGTTCTTCAAA-CC--G------GAG-AGCTCGGGGAATGTTCAGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTT-CC--GAGTTCCTCAAAACT--G------GAG-AACTCGGGGAAT-----------GTCT-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---TCTGAAC---CTGATCAGAAA--------------------------ACGTC--------------AAAGTTGGTGAACTCGGGGAATGTC-CC--GAGTTC----------------------------------ACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTT---CTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----A-G--GTTCTGGTATTACCAAGAATCCAACTAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTT---CTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
Alignments
lowQualScore : 44444444444444444 1111111111 33333333333333 22222 11111
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 11 0 5555555555 1 2 2 3 7777777 1 2 33 2 88888888888888 1 1 88888 1 1 4 00000 1 1 0 2 2 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. .. . .......... . . . . ....... . . .. . .............. . . ..... . . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 88 9 8888888888 5 7 9 3 7777777 9 7 77 1 11111111111111 9 7 44444 0 1 0 00000 3 0 6 2 3 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAACCTGATCAGAAAACGTCAAAGTCGGTGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGG---TG---------GTTCC--AAGAGCTTGTCTTCCG-GTAGCTCTGGTGTTACCAAGAGCTCGTCT---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGACCTGATAAGAAA---------ACGTCGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGG---TGTTACCAAAAGCTCGCC--ATCT--GC-------G-AACTCTGGTAAAACCAAGAGTTCATTT---TCAataa
gi|12 : CGAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtattaccaagagtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----T-G--GCTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTCCTGATCAGAAA---------CCaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTaccaatttctggaattctgaatctggagtatatccaaagacgctcaaaaagcgtcggattctggt
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTTCCGGTCAGAAA---------TCGACAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTGAAACTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAACGCGGGGAATGTC-CA--GAGTTCACCAAAAGC--GTC----C---AGCTCTGGTGGTTCCAAGAGCTCGTCT---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT---TTTTAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAAGTCGGGGAATATC-CC--GAGTTCGCCAAAAGC--GAC----G---AGCTCTGGTGGTTCCAATAGCTCGTCT---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCTGAAACTGATCAGAAA-------------------------AACGTC--------------AAAATCGGTGAACTCGGGGAATGTT-CC--GAGTTCACCAAAAGC--GTC----G---AGCTCTGGTAGTGCCAAGAGCTCGTCT---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTC-TC--GAGTTCCTCAAAACC--G------GAG-AGCTCGGGGAATGTCCCGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTT-CA--GAGTTCTTCAAAACC--G------GAG-AACTCAGGGAATGTCTCGAGTTCCTCAAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTC-TC--GAGTTCTTCAAA-CC--G------GAG-AGCTCGGGGAATGTTCAGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTT-CC--GAGTTCCTCAAAACT--G------GAG-AACTCGGGGAAT-----------GTCT-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---TCTGAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTTGGTGAACTCGGGGAATGTC-CC--GAGTTC----------------------------------ACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----A-G--GTTCTGGTATTACCAAGAATCCAACTAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
Alignments
lowQualScore : 44444444444444444 1111111111 33333333333333 22222 11111
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 11 0 5555555555 1 2 2 3 7777777 1 2 33 2 88888888888888 1 1 88888 1 1 4 00000 1 1 0 2 2 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. .. . .......... . . . . ....... . . .. . .............. . . ..... . . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 88 9 8888888888 5 7 9 3 7777777 9 7 77 1 11111111111111 9 7 44444 0 1 0 00000 3 0 6 2 3 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAACCTGATCAGAAAACGTCAAAGTCGGTGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGG---TG---------GTTCC--AAGAGCTTGTCTTCCG-GTAGCTCTGGTGTTACCAAGAGCTCGTCT---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGACCTGATAAGAAA---------ACGTCGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGG---TGTTACCAAAAGCTCGCC--ATCT--GC-------G-AACTCTGGTAAAACCAAGAGTTCATTT---TCAataa
gi|12 : CGAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagaaaccgacggtttctggacctgataagaaaacgtTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtattaccaagagtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----T-G--GCTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTCCTGATCAGAAA---------CCaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTaccaatttctggaattctgaatctggagtatatccaaagacgctcaaaaagcgtcggattctggt
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTTCCGGTCAGAAA---------TCGACAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTGAAACTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAACGCGGGGAATGTC-CA--GAGTTCACCAAAAGC--GTC----C---AGCTCTGGTGGTTCCAAGAGCTCGTCT---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT---TTTTAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAAGTCGGGGAATATC-CC--GAGTTCGCCAAAAGC--GAC----G---AGCTCTGGTGGTTCCAATAGCTCGTCT---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCTGAAACTGATCAGAAA-------------------------AACGTC--------------AAAATCGGTGAACTCGGGGAATGTT-CC--GAGTTCACCAAAAGC--GTC----G---AGCTCTGGTAGTGCCAAGAGCTCGTCT---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTC-TC--GAGTTCCTCAAAACC--G------GAG-AGCTCGGGGAATGTCCCGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTT-CA--GAGTTCTTCAAAACC--G------GAG-AACTCAGGGAATGTCTCGAGTTCCTCAAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTC-TC--GAGTTCTTCAAA-CC--G------GAG-AGCTCGGGGAATGTTCAGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTT-CC--GAGTTCCTCAAAACT--G------GAG-AACTCGGGGAAT-----------GTCT-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---TCTGAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTTGGTGAACTCGGGGAATGTC-CC--GAGTTC----------------------------------ACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----A-G--GTTCTGGTATTACCAAGAATCCAACTAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC----G-G--GCTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
blockSeqs : A CCC AC A G A TCTCCC CA AAAACTGACA TT T G T T C AGCTTGT A A AA C ATCGG T A AAAAC G T G GGGAA A C T T T GTT A A T G G A A C
blockSeqs : A . AC A G A . . AATCTTACA TT T G . T C TACC A . . C ATCGG T A AAAAC T A . . A A T T T . A A T G G A A C
blockSeqs : T . TC T A T . . AATCTTACA GA A T . T C TACC C . . G ATCTG A A AAAAC T A . . A A T T A . T T A T G G A T
blockSeqs : A . AC A G A . . CCGACGGTT TT T G . T C TTCC A . . C GTCCA T A TACT A A . . A C T T T . A A T G G A A C
blockSeqs : A . AC A G A . . AATCTGACA TT T G . T C TACC T . . A GACGA G T TT A A . . A G C T T . A A T T G G T T
blockSeqs : G . TT C C T . . TCGATTACT GT C A . C C TTCT T . . G GTCGA G T TT A A . . G G T T A . T T A C A G T T
blockSeqs : A . TT C T T . . CCGACGGTT GT T A . C C TTCC T . . A GGAGA G G TT A A . . G A . T A . T T A C A G T T
blockSeqs : T . TA T T T . . CAGACGGTT AA T A . C C TACC A . . C GGAGA A G TT A T . . . A . A A . T T A C G T C T
blockSeqs : T . TA C T T . . AATATTAAA AA T G . A C TACC C . . T GGAGA A G T G . . . . G . . A . T T C C G G T T
blockSeqs : T . TA C T T . . AATATTAAA AA T G . T C . A . . T GGAGA A G . . T . G T C T G T C T
blockSeqs : T . TA C T C . . TCGACGGTT TT T . . C . . C . . C ATCAG A A A . G T G T . T C T
blockSeqs : A . GA A T T . . AATCTTACA TT . . . T . . T . . C ATCGG T A A . T G G C . T C T
blockSeqs : C . AC A T C . . AGACGGTT AA . . . T . . A . . C GCGA T A T . A A G G . G T T
blockSeqs : C . AC T T C . . TCTGACA TT . . . . . A . . . . . . T . A A T G . A A C
blockSeqs : A . AC A G T . . ATACT TT . . T . . . T . . A A C
blockSeqs : A . AC A G A .
blockSeqs : . . A .
blockSeqCons : T********* GTCGA*********
originalCons : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC----G-G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
finalCons : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAAT---------CGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACCGTCGA---------GCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Alignments
lowQualScore : 44444444444444444 1111111111 33333 11111
lowQualScore : 1 444 11 1 1 0 1 666666 33 66666666666666666 11 0 5555555555 1 2 2 3 7777777 1 2 33 2 33 8888888 2 0 1 2 0 00000 11 1 1 4 00000 1 1 0 2 2 1 444 1 1 1 0 3 7 1 1 1
lowQualScore : . ... .. . . . . ...... .. ................. .. . .......... . . . . ....... . . .. . .. ....... . . . . . ..... .. . . . ..... . . . . . . ... . . . . . . . . .
lowQualScore : 0 111 77 8 8 4 0 444444 44 99999999999999999 88 9 8888888888 5 7 9 3 7777777 9 7 77 1 44 9999999 5 1 9 0 5 66666 88 0 1 0 00000 3 0 6 2 3 0 444 9 9 0 6 4 6 2 0 0
consensus : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC-----G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
Reference ( family-3457 ) : CCTCTACTGTTAAACCANTT---ATNCAACCTAAACCTGNCATNAAAAANAAT------AAGAA--A----CC-GACGGTT---TCTGNTTCTGATCAGAAA---------TCGGCGAACTC-GGGGAACGTCCCGAG---TNCCCCAAAACCGGNGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--GTC-----G-AGCTCTGGTANTACCAAGAGCTCGTCT---TCAGCGAGCTCTGGTANTACCA-AGAGCTCG-----TCTTCAACGANCTCTGGTGTTACCAAGAGCTCGTCATCTGCGAGCTCTGGTANTACCAAGAGTTC---ANCTNCNCCGCGNAAGGCTGGAAAAATAAATCTGGCCGCTGCNAAATTGTGCGCT
gi|1 : CCTCTACTGTAAAACCATTT---ATTAAACCCAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACAGTT---TCTGAACCTGATCAGAAAACGTCAAAGTCGGTGAACTC-GGGGAATGTCCAGAG---TTCACCAAAAGCGTCGAGCTCTGG---TG---------GTTCC--AAGAGCTTGTCTTCCGGTAGCTCTGGTGTTACCAAGAGCTCGTCT---TCAGGTGGCTCTGGTGTTACCA-AGAGCTCG-----TCTTCAACTACCTCTGGTGTTGCCAAGAGCTCGTCATCTGCGAACTATGGTAATACCAAGAGTTC---ATCTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCT
gi|10 : TTAAACCAACT---ATACAACCTTAACATAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC-----G-GGCTCTGGTATTACCAAGAG
gi|10 : acaccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac
gi|11 : acaccggtaattaaaccaactatacaaccttaacataatatgaaacaaaacaagaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAAAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGGATGTC-CC--GAGTTCCCCAAAACC--ATC-----G-GGCTCTGGTATTACCAAGAGtaac
gi|11 : actccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcataa
gi|12 : actccggtaattaaaccaattatacatcctaaaccaaatatgaaacaaaacaaaaaaaatcttacatctatttctaataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcgggggatgtcccgagttccccaaaaccatACTGTTAAACCATTT---ATTCAACCTAAACCTGTCATAAAAAATAAT------AAGAA--A----CC-GACGGTT---TCTGGACCTGATAAGAAA---------ACGTCGAGCTCTGGGG---GTTCCAAGAGCTTGTCTTCAACT----ACCTCTGG---TGTTACCAAAAGCTCGCC--ATCT--G-C-----G-AACTCTGGTAAAACCAAGAGTTCATTT---TCAataa
gi|12 : AAACC--GAC-----G-GTTTCTGGACCTGATAAGAAAACGTC---------GAGCTCTGGGGGTTCCA-AGAGCTTG-----TCTTCAACTACCTCTGGTGTTACCAAAAGCTCGCCATCTGCGAACTCTGGTAAAACCAAGAGTTC---ATTTTCACCACGTAAGGCTGGAAAAATAAATCTGGCCGCTGCAAAATTGTGTGCccacgtaaggctggaaaaataaatctggccgctgcaaaattgtgtgc
gi|13 : actgttaaaccatttattcaacctaaacctgtcataaaaaataataagTTAAACTAACT---ATACAATCTAAACCAAATATGAAACAAAAC------AAGAA--AAAAACT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TTCCCCAAAACCATCGGGCTCTGG
gi|13 : ttcaacaccagtaaCGGGCTCTGGTATTACCAAGAGTAC---AACTACTCTGCAGAAGGCT---AAGATACATCTAGCCATTGCAAAATTATGCtattaccaagagtacaactactctgcagaaggctaagatacatctagccattgcaaaattatgcgtaa
gi|14 : ttcaacaccagtaattaaactaactatacaatctaaaccaaatatgaaacaaaacaagaaaaaaactgacatctatttctgataagaaatcggcgaactcggggaatgtcccgagttccccaaaaccatTTAAACCAACT---ATACAACCTAAACCAAAAATGAAACAAAAC------AAGAA--AAAT-CT-GACA------TCTATTTCTGATAAGAAA---------TCGGCGAACTC-GGAGAATGTCCCGAG---TACCCTAAAACTGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC-----T-GGCTCTGGTATTACCAAGAtaa
gi|14 : acaccagtaaCATCTG---GCTCTGGTATTACCAAGATTCC---AACTACTCAGCATAAGGCTttccaactactcagcataaggctaa
gi|15 : acaccagtaattaaaccaactatacaacctaaaccaaaaatgaaacaaaacaagaaaaatctgacatctatttctgataagaaatcggcgaactcggagaatgtcccgagtaccctaaaactggagaactcggggaatgtcccgagttccccaaaacAAACCTGTT---ACTTAACCTAAACC---------AAATTGTTCTCCCAAGAA--A----TC-GATTACT---TCTGGTCCTGATCAGAAA---------CCaa
gi|16 : gtcacAATGAACTCTGGTGTTACCAAGAGCTCGTCAT-TGCGTACTCTGGAAATACAAAGAGCTC---ATGTTCACCACGCAAGGCTGGAAACAAAAATCTGACCGCTGCTAAATTGTGTGCTaccaatttctggaattctgaatctggagtatatccaaagacgctcaaaaagcgtcggattctggt
gi|17 : attaaaagtAATGAACTCTGGTGTTACCAAGAGCTCGCCAT-TGCGACTTCTGGTAATACCAAGAGTTC---ATGTTCACCACG----GCTGGAAACATAAATCGGGCCGCTGCTAAATTGTGTGCTc
gi|18 : CAATT---ACTTAACCGA---CTACTATCAAATATAAA------AAAAA--A----AT--AC---T---TCTGGTTCCGGTCAGAAA---------TCGACAAACTT-GGGGAGTGTCCCGAG---c
gi|19 : aattcaacaaccaaCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------GAc
gi|2 : tTCTACTGTTAAACCCTTT---ATTAAACCTAAGCCTGTCATTAAAAATAAT------AAAAA--A----A--GACGGTT---TCTGAAACTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAACGCGGGGAATGTC-CA--GAGTTCACCAAAAGC--GTC-----C-AGCTCTGGTGGTTCCAAGAGCTCGTCT---TCAGCTAGCTCTGGCATTACCA-ATAGCTCG-----TCTTCAACGACTTCTGGTGTAACCAAGGGCTCGTCATCTACGAACGCTGGTAATACAATGAGTTC---ATCTTCACCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCT
gi|20 : caCCTCTATTGTTAAGCCATTT---ATTAAACCTAAACCTGCCATTAAAAGTAAT------
gi|21 : tAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTg
gi|3 : CCTTTATTGTTAAGCAGTTT---ATTACACCTAAACCTGCCATTAAAAGCAAT------AAAAA--A----CC-GACGGTT---TTTTAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTCGGTGAAGTCGGGGAATATC-CC--GAGTTCGCCAAAAGC--GAC-----G-AGCTCTGGTGGTTCCAATAGCTCGTCT---TCAGCGAGCTCTGGTGTTACCA-AGGACTCG-----TCTTCAACGAGCTCTGGTGTTACCAAGAGC---TCATCTGCGAATTCTGGTAATACCAAGAGTTC---ATCTTCCCCACGCAAGGCTAGAAAATTAAATCTGGCCGCTGCTAAATTGTGTGCTt
gi|4 : CTCCACTGTTAAACCTATT---CTGAAACCTAAGCCTGCCAGTAAAACTTAT------AAACA--A----CA-GACGGTT---TCTGAAACTGATCAGAAA-------------------------AACGTC--------------AAAATCGGTGAACTCGGGGAATGTT-CC--GAGTTCACCAAAAGC--GTC-----G-AGCTCTGGTAGTGCCAAGAGCTCGTCT---TCTGCGGGCTCTGGTAATACCA-AGAGCTCG-----TCTTCTGCGAGCTGTGGTAGTGACAAGAGCCCGTCTTCTGTGAACTCTGTTGTTACCAAGAGTT---------CCCCTCGCAAGGCTAGAAAAATAAATCTGGCCTCTGCCAAATTGTGTc
gi|5 : AAACCTCTT---ATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATCTGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAAAGTTCAGAG---TTCTTCAAAACCGGAGAACTCAGGGAATGTC-TC--GAGTTCCTCAAAACC--GGA-----G-AGCTCGGGGAATGTCCCGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCt
gi|5 : cattgttattaAAATCTACGAACTCGGGGAAAGTT-CA--GAGTTCTTCAAAACC--GGA-----G-AACTCAGGGAATGTCTCGAGTTCCTCAAAACCGGAGAGCTCGGGGAAT------------G-----TCC----CGAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|6 : cattgttattaaaacctcttatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatctgtttctgatcagTATTAAA--ACTTCCCATACAACCAAAACCTAATCTTAAAAACAAT------AAGAA--A--------AATATTAAATATGTTTCTGATCAGAAA---------TCTACGAACTC-GGGGAATGTTCCGAG---TTCCTCAAAACTGGAGAACTCGGGGAATGTC-TC--GAGTTCTTCAAA-CC--GGA-----G-AGCTCGGGGAATGTTCAGAACTCCCCAAAACCATCGAGCTCTGGTAATACCA-AGAGTTCG-----GTTTCtc
gi|6 : cattggAAATCTACGAACTCGGGGAATGTT-CC--GAGTTCCTCAAAACT--GGA-----G-AACTCGGGGAAT-----------GTCT-------CGAGTTCT--TCAAACCGGAGAGCTCGGGGAATGTTCA--GAACTCC-------CCAAAA-----CCATC---GAGCTCTGGTAATACCAAGAGTTC---GGTTTCGCCACGTAGGGCTGGAAAAATAAATCTGGCCTCTGCCAAATTGTGTgccacgtagggctggaaaaataaatctggcctctgccaaattgtgtgtc
gi|7 : cattggtattaaaacttcccatacaaccaaaacctaatcttaaaaacaataagaaaaatattaaatatgtttctgatcagACCCAAACCTGTCATTAAAAATAAT------AAGAA--A----TC-GACGGTT---TCTGAACCTGATCAGAAA--------------------------ACGTC--------------AAAGTTGGTGAACTCGGGGAATGTC-CC--GAGTTC---------------------------------ACCAAAAGC--GTC---------GAGTTCTGGCAGTTCCA-AGAGCTCG-----TCTTCAGGTAGCTCTGATGGTACCAAGAGCTCGTCCTCAGCGATTTCTGGTGTTACCAAGAGCTCGTTATCTGCGCCACGCAAGGCTGGAAAAATAAATCTGGCCGCTGCTAAATTGTGTGCTtc
gi|8 : TAAACCAACT---ATACAACCTAAACCTAATATGAAACAAAAC------AAGAACAA----TCTGACA------TTTATTTCTGATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC-----A-GGTTCTGGTATTACCAAGAATCCAACTAC-TCAGC
gi|8 : tcaacaccagtaatacaaGTTCTGGTATTACCAAGAATCC---AACTACTCAGCAGAAGGCT---AAGATGCATTTAGTCACTGAAAAATTATGCagaaggctaagatgcatttagtcactgaaaaattatgcgtaa
gi|9 : tcaacaccagtaatacaataaaccaactatacaacctaaacctaatatgaaacaaaacaagaacaatctgacatttatttctgataagaaatcggcgaactcggggaatgtcccgagtaccccaaaaccggagaactcggggaatgtcccgagttccccaaaaccatcagTTAAACCAATT---ATACATCCTAAACCAAATATGAAACAAAAC------AAGAA--AAAT-CT-TACA------TCTATTTCTAATAAGAAA---------TCGGCGAACTC-GGGGAATGTCCCGAG---TACCCCAAAACCGGAGAACTCGGGGAATGTC-CC--GAGTTCCCCAAAACC--ATC-----G-GGCTCTGGTATTACCAAGAGtaa
gi|9 : tctactccggtaaCGGGCTCTGGTATTACCAAGAGTCC---AACTACTCCGCAGAAGGCT---AAGATACATCTAGCCACTGCAAAATTATGCtccaactactccgcagaaggctaagatacatctagccactgcaaaattatgcgtaac