lowQualScore : 111 3333333333 1 1 1 1 1111
lowQualScore : 3 555 0 666 4 2 2222222222 4 88 4 3 3 3 1 0 0 3 2 0 1 2222 8888
lowQualScore : . ... . ... . . .......... . .. . . . . . . . . . . . .... ....
lowQualScore : 7 444 2 222 8 3 3333333333 8 00 1 1 0 1 7 4 0 0 7 1 3 1111 6666
consensus : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACAGG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
Reference ( gi|4 ) : AGGCGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|5 : AGGTGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|14 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagt
gi|13 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|16 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAACGA-TAACCTGTCCCTTGGCAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-AC--------------TATAGAATTCCTT
gi|25 : AGGCGAGCATCTATAATAATAATAATAAT---TATTGCTGTTGTTTTTATCAAGACTTTCATTTCAACTAGACAATA
gi|12 : GAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAA-CAGTTAAAGCACAAACGT-TACCCTGTCCTCTGACAGG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAAATCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTT
gi|11 : AGCATCTATAA---TAGTAATGTT---TATTGCTGTAGTTTTTATAAAGACTTTCATTTCAACATGACAATATTAGAGACATATAAATAATTAAGGCACAATCGA-TACCCTGTCTTCTGACAGG-AAACAGGTGCGAAAATCGCACCTTGTTATCATAACAAAATTAAAAGCACTTGTATAAAGTCTCTATAGAATTCCTTG
gi|3 : CTATAA---TGATAATAAG---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TACCCTGTTCTCTGACAGG-AAACAGGTGCGAAAATGGTACATTGTTATCATAACAAAAGTCAATG-ACTTGTATAAAGTCTCTACATAGTTCCTTG
gi|2 : gcgaacatctataaTAA---TAATAATTAT---TATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACAAGTAAATAGGTGCGAACATGGCACCTTGTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatgcactgttagtgaatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaggtgagtgagtgaatggaagaatgaataaatatatgaaaatatgtagtagta
gi|1 : tttggaaatggagaaagaataacggaactgggaaaaaaaacgataaaagagaggagaaaatggagtaacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagcccctttgagcagcaatacaatgaacaattcataaacatattaaagaaaatatcacaaatattatatgttcatggatatgactactatatatttacttcagatcaattcaatttttttattctgacagcataatcatcatcaatagtaatatatgtcatttaataaaatgtaaacatatatcatggatgatcaagattgttatacctcgcacacgaggTAA---TAATAATTAT---CATTGCTGTTGTTTT-ATAAAGCCTTTTATTTTAACTAGA-----TCAGAGGCATATAAACAATTAATGTACAAACAAATAACCTGTCCTCTGACAGG-AAATAGGTGCGAACATGGCACCTTGTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|9 : ttggaaatggagaaagaataacagaactgtgaccaaaataaatcgataaaagggaggagaaaatggaataacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggagcatcaatattatgaacaattcaaaaacatatattatatgtacatgaatatgactactatatattcacttcagatcaattcaattttcttattctgacagcacattcatcataaattgtaatatgtcatttaataaaatataaacatatatcatggatgatcaacaatgttatacctcgcacacgaggTAA---TAATAATTAT---CATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACAGG-AAATAGGGGTAAACATGGCACCTTGTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnct
gi|6 : tggatgatcaagaatgttatacctcgcacacgaggA---TAATAATTAT---TATTGTTGTTGTTTT-ATAAAGCCTTTTATTTCAACTAGA-----TCAGAGACATATAAATAATTAAGGTACAGACAA-TAACCTGCCCTCTGACAGG-AAATAGATGCGGACATGTCACCTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc
gi|17 : atttggaaatggagaaagagtaacggaactgtgaaaaaaactataaaagagaggagaaaatggaataactaaatagggatagtagataaggtatccggacaaaagccccttggacaaaagccacttggtcaaaaaatgtacacctggacaaaagccccttggtgcatcaatacaatgaacaattcatacacatattaaagaaaaaatcacaaatattgtatgtacatgaatatgactactatatattcacttcagatcaattcaattctctttttctgacagcacaatcatcataaatagtaatatgtcatttaataaaatataaacataaaaattatatcatggatgatcaagaatgttatacctcgcacacaaggtcA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACT-----TTCATTT---CAAC--TAGAAA---ATA-TCAA---AGACATA------------------TGG-----AAATAGGTGCGAAAATAGCAGCTTGTTATCATAACAAAATTCAAGG-ACTTGTAT
gi|24 : atctATATCAGAGACGTATAAACAATTAAGGCACAAATGG-TATCCTTTCCTCTGACAGG-AAACAAGTGCTAAAATGGCACCGTGTTA
gi|7 : aaatgGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATACCTTG
gi|5 : CAAGG-AATTCTATAAAGACTTTATACAAGTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagatacaattatcgtcttattagtggggcgttatgcactgttaatggatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaagtgagtgagtgaatggaagaatgaataaatgaatgaaaatatattgcagt
gi|14 : aggtgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattCAAGG-AATTCTATAAAGACTTTACACAAGTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagt
gi|13 : aggcgagcatctataataataataataattattgctgttgtttttataaagactttcatatcagagacatataaacaattaaggcacaaatgataccctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattCAAGG-AATTCTATAAAGACTTTACACAAGTCCTTG
gi|12 : aggcgagcatctataataataataataattattgctgttgtttttataaagactttcatatcagagacatataaacaattaaggcacaaatgataccctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattAAGG-AATTCTATAGAGACTTTATACAAGTCCTTG
gi|5 : gagcatctataataataataattattgctgttgtttttataaagactttcatttcaactagacaatatcagagacatataacagttaaagcacaaacgttaccctgtcctctgacaggaaacaggtgcgaaaatggcacattgttatcataacaaaaatCAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGT
gi|3 : aggtgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAGTGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATATATGAAAATATGTAGTAGTA
gi|7 : gcgaacatctataactataatgataataagtattgctgttgtttttataaagactttcatttcaactagacaatatcagagacatataaacaattaaggcacaaacgataccctgttctctgacaggaaacaggtgcgaaaatggtacattgttatcataacaaaagtcaatgacttgtataaagtctctacatagttccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATT-ATCGTCTTATTAGTGGGGCGTTATGCACTGTTAATGGATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAAGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATATTGCAGT
gi|15 : gcacattgttatcataacaaaattcaaggacttgtataaagtctctatagaataccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagataCAATTTATAGTCCCATTAGTGGGGCCTTATGTACTGTTAATGAATCTAAAAATATTAGTGACAAGGATAAATAAATGGGTGAGTGTGTATGCGAGAATGTAAG----TGAATG-----ACAAATAAACAAATGAAAATTTGAAGCAGT
gi|20 : tttatagtatacaaacgggaagtaataaaactatctggtaaataTGCACTGTTAATGAATCTAAAAATATTAGTGACATGAACAATTAAATGGGTGGGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAt
gi|21 : CACTGTTAATGAATATAAAAATATTAGTGACATGAACAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|23 : gATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTTGGAAATGGAGAAGGAATAACGGAACTGTAAAAAACGATAAAAGAGATGAGAATATGGAGTAACGAAATAGAGAAAGTAGAGAAGGTATCTGGACAAAAGCCCTTTGGACAAAAAAACTTTGAGCATCAATACAATGATCAATTCATAAACATATTAAAGAAAAAATCACAAATATTATATGTTCATGAATATAACCACTATTTATTCACTTCAGATCAATTCAATTTTCTTATTCTGACAGCATAATCATCATCAATAGTAATACGTCATTTAATAAAATGTTAACATATATCATGGATGATCAAGA
Unaligned ( gi|10 ): AAAGAGAAAAGAATAACGGAACTGTGAAAAAAAAAACGATAAAAAAGAGAAGAAAATGGAGTAACGAAATAGGGATAGTAGACTAGCTAGACGGTATCTGGACAAAAGCCCCTTGGACAAAAGTCCCTCGGTCAAAAAATGTACACGTGGACAAAAGCCCCTGGGTGCATCAATACAGTGAACAATTCATAAACATATTAAAGAAAAAATCACAAATATTAAATGTACATGAATATGACTACT
Unaligned ( gi|18 ): TTTGGAAATCGAGAAAGAACAAATGAACTGTGAAAAAAAAAACGATAACAGAGAGGAAAAAATGGAGTAACGAAATAGGGAAAGTAGAGATCGTAGATAGTAAAGAAGGAATACGGAAAAAAGCCC
Unaligned ( gi|19 ): GTTTGGGAATGTAGAAAGGATAAAGAAGATCGGAACTGTGATAAAGGACAATGATAAAAGAGAGGAGAATATGAGGTGGTGGATAGTGGGATAGTAGATAAATAGATATCGAAATGTCAAAAG
Unaligned ( gi|22 ): TTGGAAAGGTAGAAAGAATAAAGAAGATCGGAACTGTGATAAAGGACAATGAAAAAAGAGAGGAGAATATGAGGTGATGGATAGTGGGATAGTAGAGAA
Unaligned ( gi|26 ): TGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAATGAATGGAAAATGTAGCA
Unaligned ( gi|27 ): TAGAGGGTATCCAGACAAATGCCTCTTGGACAAAGGTCCCTG
Alignments
lowQualScore : 111 222 11111 222222222
lowQualScore : 000 000 1 88888 2 1 555 2 1 4 0 8 0 111111111
lowQualScore : ... ... . ..... . . ... . . . . . . .........
lowQualScore : 000 000 5 44444 9 0 000 9 0 0 3 0 2 999999999
consensus : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
Reference ( family-3441 ) : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|1 : TAA---TAATAATTAT---CATTGCTGTTGTTTT-ATAAAGCCTTTTATTTTAACTAGA-----TCAGAGGCATATAAACAATTAATGTACAAACAAATAACCTGTCCTCTGACA---GG-AAATAGGTGCGAACATGGCACCTTGTTA
gi|11 : ttggaaatggagaaagaataacagaactgtgaccaaaataaatcgataaaagggaggagaaaatggaataacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggagcatcaatattatgaacaattcaaaaacatatattatatgtacatgaatatgactactatatattcacttcagatcaattcaattttcttattctgacagcacattcatcataaattgtaatatgtcatttaataaaatataaacatatatcatggatgatcaacaatgttatacctcgcacacgaggAGCATCTATAA---TAGTAATGTT---TATTGCTGTAGTTTTTATAAAGACTTTCATTTCAACATGACAATATTAGAGACATATAAATAATTAAGGCACAATCGA-TACCCTGTCTTCTGACA---GG-AAACAGGTGCGAAAATCGCACCTTGTTATCATAACAAAATTAAAAGCACTTGTATAAAGTCTCTATAGAATTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnct
gi|12 : GAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAA-CAGTTAAAGCACAAACGT-TACCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAAATCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTT
gi|13 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|14 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|15 : CAATTTATAGTCCCATTAGTGGGGCCTTATGTACTGTTAATGAATCTAAAAATATTAGTGACAAGGATAAATAAATGGGTGAGTGTGTATGCGAGAATG----TAAGTGAATG-----ACAAATAAACAAATGAAAATTTGAAGCAGT
gi|16 : tttatagtatacaaacgggaagtaataaaactatctggtaaataAGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAACGA-TAACCTGTCCCTTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-AC--------------TATAGAATTCCTTt
gi|17 : ATCTATAA------TAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGAAAATATCAAAGACATATGGA-AAT--AGGTGCGAA-AA-TAGC
gi|17 : GACATATGG-AAATAGGTGCGAAAATAGCAGCTTGTTATCATAACAAAATTCAAGG-ACTTGTATagcttgttatcataacaaaattcaaggacttgtat
gi|2 : atctataataataattattgctgttgtttttataaagactttcatttcaactagaaaatatcaaaTAA---TAATAATTAT---TATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---AGTAAATAGGTGCGAACATGGCACCTTGTTA
gi|20 : tttggaaatggagaaagaataacggaactgggaaaaaaaacgataaaagagaggagaaaatggagtaacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagcccctttgagcagcaatacaatgaacaattcataaacatattaaagaaaatatcacaaatattatatgttcatggatatgactactatatatttacttcagatcaattcaatttttttattctgacagcataatcatcatcaatagtaatatatgtcatttaataaaatgtaaacatatatcatggatgatcaagattgttatacctcgcacacgaggTGCACTGTTAATGAATCTAAAAATATTAGTGACATGAACAATTAAATGGGTGGGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|21 : GCACTGTTAATGAATATAAAAATATTAGTGACATGAACAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|23 : ATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|24 : ATATCAGAGACGTATAAACAATTAAGGCACAAATGG-TATCCTTTCCTCTGACA---GG-AAACAAGTGCTAAAATGGCACCGTGTTA
gi|25 : aaatgAGGCGAGCATCTATAATAATAATAATAAT---TATTGCTGTTGTTTTTATCAAGACTTTCATTTCAACTAGACAATA
gi|3 : GCGAACATCTATAACTATAATGATAATAAGTATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TACCCTGTTCTCTGACA---GG-AAACAGGTGCGAAAATGGTACATTGTTATCATAACAAAAGTCAATG-ACTTGTATAAAGTCTCTACATAGTTCCTTG
gi|3 : CAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAGTGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATATATGAAAATATGTAGTAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatgcactgttagtgaatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaggtgagtgagtgaatggaagaatgaataaatatatgaaaatatgtagtagta
gi|4 : gcgaacatctataactataatgataataagtattgctgttgtttttataaagactttcatttcaactagacaatatcagagacatataaacaattaaggcacaaacgataccctgttctctgacaggaaacaggtgcgaaaatggtacattgttatcataacaaaagtcaatgacttgtataaagtctctacatagttccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGCGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|4 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagta
gi|5 : aggcgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|5 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagt
gi|6 : aggtgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA---TAATAATTAT---TATTGTTGTTGTTTT-ATAAAGCCTTTTATTTCAACTAGA-----TCAGAGACATATAAATAATTAAGGTACAGACAA-TAACCTGCCCTCTGACA---GG-AAATAGATGCGGACATGTCACCTTTTT
gi|7 : atttggaaatggagaaagagtaacggaactgtgaaaaaaactataaaagagaggagaaaatggaataactaaatagggatagtagataaggtatccggacaaaagccccttggacaaaagccacttggtcaaaaaatgtacacctggacaaaagccccttggtgcatcaatacaatgaacaattcatacacatattaaagaaaaaatcacaaatattgtatgtacatgaatatgactactatatattcacttcagatcaattcaattctctttttctgacagcacaatcatcataaatagtaatatgtcatttaataaaatataaacataaaaattatatcatggatgatcaagaatgttatacctcgcacacaaggtcGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATACCTTG
gi|7 : CAATT-ATCGTCTTATTAGTGGGGCGTTATGCACTGTTAATGGATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAAGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATATTGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagatacaattatcgtcttattagtggggcgttatgcactgttaatggatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaagtgagtgagtgaatggaagaatgaataaatgaatgaaaatatattgcagt
gi|9 : gcacattgttatcataacaaaattcaaggacttgtataaagtctctatagaataccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagataTAA---TAATAATTAT---CATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---GG-AAATAGGGGTAAACATGGCACCTTGTTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTGGAAATGGAGAAGGAATAACGGAACTGTAAAAAACGATAAAAGAGATGAGAATATGGAGTAACGAAATAGAGAAAGTAGAGAAGGTATCTGGACAAAAGCCCTTTGGACAAAAAAACTTTGAGCATCAATACAATGATCAATTCATAAACATATTAAAGAAAAAATCACAAATATTATATGTTCATGAATATAACCACTATTTATTCACTTCAGATCAATTCAATTTTCTTATTCTGACAGCATAATCATCATCAATAGTAATACGTCATTTAATAAAATGTTAACATATATCATGGATGATCAAGA
Unaligned ( gi|10 ): AAAGAGAAAAGAATAACGGAACTGTGAAAAAAAAAACGATAAAAAAGAGAAGAAAATGGAGTAACGAAATAGGGATAGTAGACTAGCTAGACGGTATCTGGACAAAAGCCCCTTGGACAAAAGTCCCTCGGTCAAAAAATGTACACGTGGACAAAAGCCCCTGGGTGCATCAATACAGTGAACAATTCATAAACATATTAAAGAAAAAATCACAAATATTAAATGTACATGAATATGACTACT
Unaligned ( gi|18 ): TTTGGAAATCGAGAAAGAACAAATGAACTGTGAAAAAAAAAACGATAACAGAGAGGAAAAAATGGAGTAACGAAATAGGGAAAGTAGAGATCGTAGATAGTAAAGAAGGAATACGGAAAAAAGCCC
Unaligned ( gi|19 ): GTTTGGGAATGTAGAAAGGATAAAGAAGATCGGAACTGTGATAAAGGACAATGATAAAAGAGAGGAGAATATGAGGTGGTGGATAGTGGGATAGTAGATAAATAGATATCGAAATGTCAAAAG
Unaligned ( gi|22 ): TTGGAAAGGTAGAAAGAATAAAGAAGATCGGAACTGTGATAAAGGACAATGAAAAAAGAGAGGAGAATATGAGGTGATGGATAGTGGGATAGTAGAGAA
Unaligned ( gi|26 ): TGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAATGAATGGAAAATGTAGCA
Unaligned ( gi|27 ): TAGAGGGTATCCAGACAAATGCCTCTTGGACAAAGGTCCCTG
Alignments
lowQualScore : 111 222 11111 222222222
lowQualScore : 000 000 1 88888 2 1 555 2 1 4 8 0 111111111
lowQualScore : ... ... . ..... . . ... . . . . . .........
lowQualScore : 000 000 5 44444 9 0 000 9 0 0 0 2 999999999
consensus : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
Reference ( family-3441 ) : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|1 : TAA---TAATAATTAT---CATTGCTGTTGTTTT-ATAAAGCCTTTTATTTTAACTAGA-----TCAGAGGCATATAAACAATTAATGTACAAACAAATAACCTGTCCTCTGACA---GG-AAATAGGTGCGAACATGGCACCTTGTTA
gi|11 : ttggaaatggagaaagaataacagaactgtgaccaaaataaatcgataaaagggaggagaaaatggaataacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggagcatcaatattatgaacaattcaaaaacatatattatatgtacatgaatatgactactatatattcacttcagatcaattcaattttcttattctgacagcacattcatcataaattgtaatatgtcatttaataaaatataaacatatatcatggatgatcaacaatgttatacctcgcacacgaggAGCATCTATAA---TAGTAATGTT---TATTGCTGTAGTTTTTATAAAGACTTTCATTTCAACATGACAATATTAGAGACATATAAATAATTAAGGCACAATCGA-TACCCTGTCTTCTGACA---GG-AAACAGGTGCGAAAATCGCACCTTGTTATCATAACAAAATTAAAAGCACTTGTATAAAGTCTCTATAGAATTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnct
gi|12 : GAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAA-CAGTTAAAGCACAAACGT-TACCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAAATCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTT
gi|13 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|14 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|15 : CAATTTATAGTCCCATTAGTGGGGCCTTATGTACTGTTAATGAATCTAAAAATATTAGTGACAAGGATAAATAAATGGGTGAGTGTGTATGCGAGAATG----TAAGTGAATG-----ACAAATAAACAAATGAAAATTTGAAGCAGT
gi|16 : tttatagtatacaaacgggaagtaataaaactatctggtaaataAGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAACGA-TAACCTGTCCCTTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-A--------------CTATAGAATTCCTTt
gi|17 : ATCTATAA------TAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGAAAATATCAAAGACATATGGA-AAT--AGGTGCGAA-AA-TAGC
gi|17 : GACATATGG-AAATAGGTGCGAAAATAGCAGCTTGTTATCATAACAAAATTCAAGG-ACTTGTATagcttgttatcataacaaaattcaaggacttgtat
gi|2 : atctataataataattattgctgttgtttttataaagactttcatttcaactagaaaatatcaaaTAA---TAATAATTAT---TATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---AGTAAATAGGTGCGAACATGGCACCTTGTTA
gi|20 : tttggaaatggagaaagaataacggaactgggaaaaaaaacgataaaagagaggagaaaatggagtaacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagcccctttgagcagcaatacaatgaacaattcataaacatattaaagaaaatatcacaaatattatatgttcatggatatgactactatatatttacttcagatcaattcaatttttttattctgacagcataatcatcatcaatagtaatatatgtcatttaataaaatgtaaacatatatcatggatgatcaagattgttatacctcgcacacgaggTGCACTGTTAATGAATCTAAAAATATTAGTGACATGAACAATTAAATGGGTGGGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|21 : GCACTGTTAATGAATATAAAAATATTAGTGACATGAACAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|23 : ATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|24 : ATATCAGAGACGTATAAACAATTAAGGCACAAATGG-TATCCTTTCCTCTGACA---GG-AAACAAGTGCTAAAATGGCACCGTGTTA
gi|25 : aaatgAGGCGAGCATCTATAATAATAATAATAAT---TATTGCTGTTGTTTTTATCAAGACTTTCATTTCAACTAGACAATA
gi|3 : GCGAACATCTATAACTATAATGATAATAAGTATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TACCCTGTTCTCTGACA---GG-AAACAGGTGCGAAAATGGTACATTGTTATCATAACAAAAGTCAATG-ACTTGTATAAAGTCTCTACATAGTTCCTTG
gi|3 : CAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAGTGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATATATGAAAATATGTAGTAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatgcactgttagtgaatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaggtgagtgagtgaatggaagaatgaataaatatatgaaaatatgtagtagta
gi|4 : gcgaacatctataactataatgataataagtattgctgttgtttttataaagactttcatttcaactagacaatatcagagacatataaacaattaaggcacaaacgataccctgttctctgacaggaaacaggtgcgaaaatggtacattgttatcataacaaaagtcaatgacttgtataaagtctctacatagttccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGCGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|4 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagta
gi|5 : aggcgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|5 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagt
gi|6 : aggtgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA---TAATAATTAT---TATTGTTGTTGTTTT-ATAAAGCCTTTTATTTCAACTAGA-----TCAGAGACATATAAATAATTAAGGTACAGACAA-TAACCTGCCCTCTGACA---GG-AAATAGATGCGGACATGTCACCTTTTT
gi|7 : atttggaaatggagaaagagtaacggaactgtgaaaaaaactataaaagagaggagaaaatggaataactaaatagggatagtagataaggtatccggacaaaagccccttggacaaaagccacttggtcaaaaaatgtacacctggacaaaagccccttggtgcatcaatacaatgaacaattcatacacatattaaagaaaaaatcacaaatattgtatgtacatgaatatgactactatatattcacttcagatcaattcaattctctttttctgacagcacaatcatcataaatagtaatatgtcatttaataaaatataaacataaaaattatatcatggatgatcaagaatgttatacctcgcacacaaggtcGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATACCTTG
gi|7 : CAATT-ATCGTCTTATTAGTGGGGCGTTATGCACTGTTAATGGATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAAGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATATTGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagatacaattatcgtcttattagtggggcgttatgcactgttaatggatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaagtgagtgagtgaatggaagaatgaataaatgaatgaaaatatattgcagt
gi|9 : gcacattgttatcataacaaaattcaaggacttgtataaagtctctatagaataccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagataTAA---TAATAATTAT---CATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---GG-AAATAGGGGTAAACATGGCACCTTGTTA
blockSeqs : TAA AAT T ACAAT . C TAT T C . . GTGAG
blockSeqs : CTA AAT T ACAAT . C . . A . . GTGAG
blockSeqs : . AAT T AAAAT . C . . A . . G
blockSeqs : . AAG T ACAAT . C . . A . . G
blockSeqs : . . T ACAAT . A . . A . G
blockSeqs : . . T ACAAT . G . . C . G
blockSeqs : . . T ACAAT . A . . C . G
blockSeqs : . . T A . T . . C .
blockSeqs : . . T . . C . . A .
blockSeqs : . . T . . A . . A
blockSeqs : . . . . . A . . A
blockSeqs : . . . . . A . . C
blockSeqs : . . . . . A . . A
blockSeqs : C
blockSeqCons : ACAAT G********
originalCons : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
finalCons : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGAG--------TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTGGAAATGGAGAAGGAATAACGGAACTGTAAAAAACGATAAAAGAGATGAGAATATGGAGTAACGAAATAGAGAAAGTAGAGAAGGTATCTGGACAAAAGCCCTTTGGACAAAAAAACTTTGAGCATCAATACAATGATCAATTCATAAACATATTAAAGAAAAAATCACAAATATTATATGTTCATGAATATAACCACTATTTATTCACTTCAGATCAATTCAATTTTCTTATTCTGACAGCATAATCATCATCAATAGTAATACGTCATTTAATAAAATGTTAACATATATCATGGATGATCAAGA
Unaligned ( gi|10 ): AAAGAGAAAAGAATAACGGAACTGTGAAAAAAAAAACGATAAAAAAGAGAAGAAAATGGAGTAACGAAATAGGGATAGTAGACTAGCTAGACGGTATCTGGACAAAAGCCCCTTGGACAAAAGTCCCTCGGTCAAAAAATGTACACGTGGACAAAAGCCCCTGGGTGCATCAATACAGTGAACAATTCATAAACATATTAAAGAAAAAATCACAAATATTAAATGTACATGAATATGACTACT
Unaligned ( gi|18 ): TTTGGAAATCGAGAAAGAACAAATGAACTGTGAAAAAAAAAACGATAACAGAGAGGAAAAAATGGAGTAACGAAATAGGGAAAGTAGAGATCGTAGATAGTAAAGAAGGAATACGGAAAAAAGCCC
Unaligned ( gi|19 ): GTTTGGGAATGTAGAAAGGATAAAGAAGATCGGAACTGTGATAAAGGACAATGATAAAAGAGAGGAGAATATGAGGTGGTGGATAGTGGGATAGTAGATAAATAGATATCGAAATGTCAAAAG
Unaligned ( gi|22 ): TTGGAAAGGTAGAAAGAATAAAGAAGATCGGAACTGTGATAAAGGACAATGAAAAAAGAGAGGAGAATATGAGGTGATGGATAGTGGGATAGTAGAGAA
Unaligned ( gi|26 ): TGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAATGAATGGAAAATGTAGCA
Unaligned ( gi|27 ): TAGAGGGTATCCAGACAAATGCCTCTTGGACAAAGGTCCCTG
Alignments
lowQualScore : 111 222 11111 222222222
lowQualScore : 000 000 1 88888 2 1 555 2 1 4 8 0 111111111
lowQualScore : ... ... . ..... . . ... . . . . . .........
lowQualScore : 000 000 5 44444 9 0 000 9 0 0 0 2 999999999
consensus : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
Reference ( family-3441 ) : AGGCGAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TANCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACNTTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAATGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|1 : TAA---TAATAATTAT---CATTGCTGTTGTTTT-ATAAAGCCTTTTATTTTAACTAGA-----TCAGAGGCATATAAACAATTAATGTACAAACAAATAACCTGTCCTCTGACA---GG-AAATAGGTGCGAACATGGCACCTTGTTA
gi|11 : ttggaaatggagaaagaataacagaactgtgaccaaaataaatcgataaaagggaggagaaaatggaataacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggtcaagaaatgtacacctggacaaaagccccttggagcatcaatattatgaacaattcaaaaacatatattatatgtacatgaatatgactactatatattcacttcagatcaattcaattttcttattctgacagcacattcatcataaattgtaatatgtcatttaataaaatataaacatatatcatggatgatcaacaatgttatacctcgcacacgaggAGCATCTATAA---TAGTAATGTT---TATTGCTGTAGTTTTTATAAAGACTTTCATTTCAACATGACAATATTAGAGACATATAAATAATTAAGGCACAATCGA-TACCCTGTCTTCTGACA---GG-AAACAGGTGCGAAAATCGCACCTTGTTATCATAACAAAATTAAAAGCACTTGTATAAAGTCTCTATAGAATTCCTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnct
gi|12 : GAGCATCTATAA---TAATAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAA-CAGTTAAAGCACAAACGT-TACCCTGTCCTCTGACA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAAATCAAGG-ACTTGTATAAAGTCTCTATAGAATTCCTT
gi|13 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|14 : AGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAATGA-TACCCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTGTAAAGTCTTTATAGAATTCCTTG
gi|15 : CAATTTATAGTCCCATTAGTGGGGCCTTATGTACTGTTAATGAATCTAAAAATATTAGTGACAAGGATAAATAAATGGGTGAGTGTGTATGCGAGAATG----TAAGTGAATG-----ACAAATAAACAAATGAAAATTTGAAGCAGT
gi|16 : tttatagtatacaaacgggaagtaataaaactatctggtaaataAGGCGAGCATCTATAA---TAATAATAATAATTATTGCTGTTGTTTTTATAAAGACTTTCAT--------------ATCAGAGACATATAAACAATTAAGGCACAAACGA-TAACCTGTCCCTTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-A--------------CTATAGAATTCCTTt
gi|17 : ATCTATAA------TAATAAT---TATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGAAAATATCAAAGACATATGGA-AAT--AGGTGCGAA-AA-TAGC
gi|17 : GACATATGG-AAATAGGTGCGAAAATAGCAGCTTGTTATCATAACAAAATTCAAGG-ACTTGTATagcttgttatcataacaaaattcaaggacttgtat
gi|2 : atctataataataattattgctgttgtttttataaagactttcatttcaactagaaaatatcaaaTAA---TAATAATTAT---TATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---AGTAAATAGGTGCGAACATGGCACCTTGTTA
gi|20 : tttggaaatggagaaagaataacggaactgggaaaaaaaacgataaaagagaggagaaaatggagtaacgaaatagggatagtagagaaggtatccggacaaaagccccttggacaaaagcccctttgagcagcaatacaatgaacaattcataaacatattaaagaaaatatcacaaatattatatgttcatggatatgactactatatatttacttcagatcaattcaatttttttattctgacagcataatcatcatcaatagtaatatatgtcatttaataaaatgtaaacatatatcatggatgatcaagattgttatacctcgcacacgaggTGCACTGTTAATGAATCTAAAAATATTAGTGACATGAACAATTAAATGGGTGGGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|21 : GCACTGTTAATGAATATAAAAATATTAGTGACATGAACAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|23 : ATTAGTGACATGAATAATTAAATGGGTGAGCTTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTA
gi|24 : ATATCAGAGACGTATAAACAATTAAGGCACAAATGG-TATCCTTTCCTCTGACA---GG-AAACAAGTGCTAAAATGGCACCGTGTTA
gi|25 : aaatgAGGCGAGCATCTATAATAATAATAATAAT---TATTGCTGTTGTTTTTATCAAGACTTTCATTTCAACTAGACAATA
gi|3 : GCGAACATCTATAACTATAATGATAATAAGTATTGCTGTTGTTTTTATAAAGACTTTCATTTCAACTAGACAATATCAGAGACATATAAACAATTAAGGCACAAACGA-TACCCTGTTCTCTGACA---GG-AAACAGGTGCGAAAATGGTACATTGTTATCATAACAAAAGTCAATG-ACTTGTATAAAGTCTCTACATAGTTCCTTG
gi|3 : CAATT-ATCGTCTCATTAGTGGGGCGTTATGCACTGTTAGTGAATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAGGTGA----G----TGAGTGAATGGAAGAATGAATAAATATATGAAAATATGTAGTAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatgcactgttagtgaatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaggtgagtgagtgaatggaagaatgaataaatatatgaaaatatgtagtagta
gi|4 : gcgaacatctataactataatgataataagtattgctgttgtttttataaagactttcatttcaactagacaatatcagagacatataaacaattaaggcacaaacgataccctgttctctgacaggaaacaggtgcgaaaatggtacattgttatcataacaaaagtcaatgacttgtataaagtctctacatagttccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGCGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|4 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagta
gi|5 : aggcgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTGAGCACCTATAA---TAATAATAAT---TATTGCTGTTATTTTTATAAAGACTTTCATTTCATCTAGACAATATCAGAGACATATAATCAATTAAGGCACAAACGG-TAACCTGTCCTCTGGCA---GG-AAACAGGTGCGAAAATGGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTTTATAGAATTCCTTG
gi|5 : CAATT-ATCGTCTCATTAGTGGGGCGTTATACACTGTTAATGAATCTAAATATATTAGTGACAGGAATAATTAAATGGGTGAGCTTGTAGGTGA----GTGAG----TGAATGGAAGAATGAATAAATGAATGAAAATATGTAGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattatcgtctcattagtggggcgttatacactgttaatgaatctaaatatattagtgacaggaataattaaatgggtgagcttgtaggtgagtgagtgaatggaagaatgaataaatgaatgaaaatatgtagcagt
gi|6 : aggtgagcacctataataataataattattgctgttatttttataaagactttcatttcatctagacaatatcagagacatataatcaattaaggcacaaacggtaacctgtcctctggcaggaaacaggtgcgaaaatggcacattgttatcataacaaaattcaaggacttgtataaagtctttatagaattccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA---TAATAATTAT---TATTGTTGTTGTTTT-ATAAAGCCTTTTATTTCAACTAGA-----TCAGAGACATATAAATAATTAAGGTACAGACAA-TAACCTGCCCTCTGACA---GG-AAATAGATGCGGACATGTCACCTTTTT
gi|7 : atttggaaatggagaaagagtaacggaactgtgaaaaaaactataaaagagaggagaaaatggaataactaaatagggatagtagataaggtatccggacaaaagccccttggacaaaagccacttggtcaaaaaatgtacacctggacaaaagccccttggtgcatcaatacaatgaacaattcatacacatattaaagaaaaaatcacaaatattgtatgtacatgaatatgactactatatattcacttcagatcaattcaattctctttttctgacagcacaatcatcataaatagtaatatgtcatttaataaaatataaacataaaaattatatcatggatgatcaagaatgttatacctcgcacacaaggtcGCACATTGTTATCATAACAAAATTCAAGG-ACTTGTATAAAGTCTCTATAGAATACCTTG
gi|7 : CAATT-ATCGTCTTATTAGTGGGGCGTTATGCACTGTTAATGGATCTAAAAATATTAGTGACATGAATAATTAAATGGGTGAGTGTGTAAGTGA----G----TGAGTGAATGGAAGAATGAATAAATGAATGAAAATATATTGCAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagatacaattatcgtcttattagtggggcgttatgcactgttaatggatctaaaaatattagtgacatgaataattaaatgggtgagtgtgtaagtgagtgagtgaatggaagaatgaataaatgaatgaaaatatattgcagt
gi|9 : gcacattgttatcataacaaaattcaaggacttgtataaagtctctatagaataccttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctaaataaaatgaagttttatagtgtacaaacagggaggaataacacttccctgtagataTAA---TAATAATTAT---CATTGCTGTTG-TTTTATAAAGCCTTTTATTTCAACTAG-----ATCAGAGACTTATAAACAATTAAGGTACAGACAA-TAACCTGTCCTCTGACA---GG-AAATAGGGGTAAACATGGCACCTTGTTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTGGAAATGGAGAAGGAATAACGGAACTGTAAAAAACGATAAAAGAGATGAGAATATGGAGTAACGAAATAGAGAAAGTAGAGAAGGTATCTGGACAAAAGCCCTTTGGACAAAAAAACTTTGAGCATCAATACAATGATCAATTCATAAACATATTAAAGAAAAAATCACAAATATTATATGTTCATGAATATAACCACTATTTATTCACTTCAGATCAATTCAATTTTCTTATTCTGACAGCATAATCATCATCAATAGTAATACGTCATTTAATAAAATGTTAACATATATCATGGATGATCAAGA
Unaligned ( gi|10 ): AAAGAGAAAAGAATAACGGAACTGTGAAAAAAAAAACGATAAAAAAGAGAAGAAAATGGAGTAACGAAATAGGGATAGTAGACTAGCTAGACGGTATCTGGACAAAAGCCCCTTGGACAAAAGTCCCTCGGTCAAAAAATGTACACGTGGACAAAAGCCCCTGGGTGCATCAATACAGTGAACAATTCATAAACATATTAAAGAAAAAATCACAAATATTAAATGTACATGAATATGACTACT
Unaligned ( gi|18 ): TTTGGAAATCGAGAAAGAACAAATGAACTGTGAAAAAAAAAACGATAACAGAGAGGAAAAAATGGAGTAACGAAATAGGGAAAGTAGAGATCGTAGATAGTAAAGAAGGAATACGGAAAAAAGCCC
Unaligned ( gi|19 ): GTTTGGGAATGTAGAAAGGATAAAGAAGATCGGAACTGTGATAAAGGACAATGATAAAAGAGAGGAGAATATGAGGTGGTGGATAGTGGGATAGTAGATAAATAGATATCGAAATGTCAAAAG
Unaligned ( gi|22 ): TTGGAAAGGTAGAAAGAATAAAGAAGATCGGAACTGTGATAAAGGACAATGAAAAAAGAGAGGAGAATATGAGGTGATGGATAGTGGGATAGTAGAGAA
Unaligned ( gi|26 ): TGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGAATGAATGGAAAATGTAGCA
Unaligned ( gi|27 ): TAGAGGGTATCCAGACAAATGCCTCTTGGACAAAGGTCCCTG