lowQualScore : 1 66666 22 1 1 1 1 4 666666666666666 1 3333 666666666 7777777777 1 222 1 22222 222222 11 22222222 222222 1 1 11 22 1 555555555555555555555555 11111 1 111111111 1 1 777777777777777777777
lowQualScore : 7 77777 6 6 6 6 6 11 6 6 6 7 6 7 5 5 0 6 8 6 444444444444444 6 7 7777 0 6 6 4 111111111 4 8 8888888888 0 777 5 6 4 3 2 55555 2 888888 7 33 0 6 22222222 8 444444 5 3 3 1 5 5 1 5 0 6 77 4 66 0 0 5 66 6 4 0 4 2 777 11 2 4 8888 3 55 000000000000000000000000 99999 00000 6 99999 7777 666 444444444 0 1 7 555555555555555555555 5
lowQualScore : . ..... . . . . . .. . . . . . . . . . . . . ............... . . .... . . . . ......... . . .......... . ... . . . . . ..... . ...... . .. . . ........ . ...... . . . . . . . . . . .. . .. . . . .. . . . . . ... .. . . .... . .. ........................ ..... ..... . ..... .... ... ......... . . . ..................... .
lowQualScore : 0 00000 0 0 0 0 0 00 0 0 0 0 0 0 0 0 0 0 3 0 333333333333333 7 0 0000 2 0 0 0 222222222 0 8 2222222222 0 555 0 0 0 2 5 55555 5 888888 8 88 8 0 88888888 0 888888 0 7 3 8 0 7 4 7 6 6 44 0 99 5 5 5 99 7 4 1 4 7 888 22 6 0 5555 6 00 666666666666666666666666 11111 44444 7 11111 4444 444 555555555 5 9 0 888888888888888888888 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTTATCATATAAGTGAATAATTTTATCTA--TTGA-A--TATTGATATGTTTTCATATTAATGATTAGCACTGATCACTCATTCAGACAATAAGATNAAACAAA--A------CATATNATTATTTGTTGTTATA-------CCATTAATACTATCCTTATTATCTGATATGTAT-ATAT-ACTGTTGCTATATTTATTAGTTTTGTTATAAANAATAAATAAACACAGTCAAGAA---TATAACA------TTNACC--TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATT--TA--TTAAATGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATAC-ATAAACAT-AACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCG---AAAGACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAAAATG---T------------------TTTT-----TTTG--C-AAAAACAAT-----TT---TAAAT---TCATATCTGATATATA---------AAATAATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG----GT-T-T-------TTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
Reference ( gi|1 ) : AGTAGTGTAACTCATACGTACAGATATGTTAATGCGTGGGTGTATCGGAAGCACGGGGTGAAAATTCAAAACGGGGTGAACAATTATTTGACTTTCGGTTATTAATAAAATACCATAACATCATTTGACAATTTAAATTTTTATTAATACGACATGAATACTGATATATTGACATCATTATACATATTTACAATGAGCGATCAAAGCGTGTAACAATGTCTTCATTGACACTGTGATTATCCATCAAGTTTAGATGTGTTTCATACTGAAACTATTTAACGCTATTCCCATTCATTTTCTTCTTCAGACTCTTCTTCTTCAGATACTGCTTCGTATTTTATATATTTGTGTCGTAATTCTTATTTCCTTTTCCACTTGTTTCACGCCTTTGCAATTTAAATTACTTTATATATTATAAAGATGTATATCTTATTTGGTTTGAGAACAAAATGAGATATGTGCATTTTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTAAATAATTTTATTTA--TTGATATTTATTGATATGTTTTCATTTTAATTAAAAGCACTGATCATTCGTTCAGACAATAAGATTAAACAAA---------CATATTATTATTTGTTGTTATAATTTTATCTATTAATACTATCCTTATTATCTGATATGTAT-ATGT-ACTGTTGATATATTTATTAGTTTTATTATAAAAAATAAATAAACACAGTCAAGTA---TATAACA------TTTACC--TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATT--TT--TTAAATGAACTTTTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTAAATTATACCTATCAGAATAAAAATATAC-ATAATCAT-TACCCAATAACTTCTAGATTTATATCA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACATAAA--TTTGATAAACA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACTG---AAAGACAAGTTGACACAAATATTGTGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAAAACG---T------------------TTTT-----TTTG--C-AAAATCAAT-----TT---CAAAT---TCATATCTGATATATA---------AAATAATAGAAACATGATCAGTTATGCCTTAAAAAGCTAAATCTAG----CT-TCT-------TTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|2 : TAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTGAATAATTTCATTTA--TTGACATTTATTGATATTTTTTCATATTAATGATAAGCATTGATCACTCATTCAGACAATTAGATTAAACAAA---------CATATAATTATGTGTTGTTATA---------------ACTATCCTTACTATGTGATATGTAT-ATAT-ACTGTTGCTATATTTATTAGTTTTGTTATAAATAATAAATAGACACAGTCAAGAA---TATTACAGTCACTTTTATTTATTTATTTATTTATTAAATAATCTTATTACCGGATATATTTATATTA-TATTGTTGCTATATTTATT--TA--TTAAATGAACCTGTGTATTACAGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACAATAA-CAT-AACTCAATAACTTCTGGATTTATATTA--ACAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTTTTTAAAAGTTTTATAAAAA-TAA-TGTATTTCGGTTATAATTGAAATC-AAGGGAAGTAACTCGTAATAACCG---AAAGACACATTGACACACTTATTGGGT-AAA-A----TGCA-TCAAA--TATTACATTTTTAAAATG---TATTTTTTTTTGTTTTTTGTTTT-----TTTG--T-AAAAACAAT-----TT---TAAAT---TCATATATGATATATA---------AAATAATAGAAACATGATCATGTATGCCTTAAATAGCTAAA--------------T-------TTCGGTGTCTTTTGTTT
gi|5 : ttTACTTAAATAAAATAATTGTACTTATCATATAAGTGAATAATTTTAT-------G-----TATTGATATGTTTTCATATTAATGATTAACACTGACCACTCATTCAGACAATAAGATTAAACAAA---------CATATTATTATTTGTTGTTAT--------CCATTAATACTATCCTTATTATCTGATATGTAT-ATAT-ACTGTTGCTATATTTATTAGATTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACA------TTAACC--TTTAATTATTAATTAAATAATCTTATAACCGGATATA--TA---TA-CATTGTTGCTATATTTATT--TA--TTAAATGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACTGAAATACACTTGAATTATACCTATCAGAATAAAAACATAC-ATAAATAT-AGCCCAATAACTTCTAGATTTATATTA--ATAAAACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTATGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTAATAATTGAAATA-AAGGGAAGTAACTCGTTATAACTG---AAAGACACATTGACACAAATATTGAGTtttccag
gi|3 : ATAATTATACTTATCATCTGAGTGAATAATTTT--CTAATTTGAAA---ATT---ATGTTTTTATATTAATGATTAGCAATGATCACTCATTCAGACAATAAGATAAAAAAAAACAA-----CATATAATTATTTTTTGTTATAACTTTATTCATTAATACTATCCTTATTATCTGATATGTAT-AT--------------ATTTGTTAGTTTTGTTATAAATAATAAA--AA---AGTTAAAAAAAATACAA--------TTCACC--TTTATTTATTCA----ATAATCTTATTACCGGATATA--TT---TAATATTGTCGCTTTATTTATCGATTAATTAGTTGAACATGTGCATTACGGTAGAACAGACAACTCTGGGAATAC-GAAAAACACTTGAATTGTACCTATCAGAACAAAAATACAC-ATTAACAT-AACCCAATAACTTGTAGATTTATATTA--ATAATACATTTGATCAACCATTATTGATGTTTAAATAAAGTTATTAATGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCAAAATC-AAGGGAAGAAACTCGTAATAACCG---AAAGACACACTGGCACAAAAATTGGGTAAAA-A----C-CA-TCAAA--TCGTACATATTTAAAATGTT-T------------------TTTT-----TTTT--C-AAAAACTAT-----TT---TAAAT---TCATATCTGATACATA---------ATGTAATAGAAACTTGATAATTTATGCCTTAAATAGCTAAATTTAG----GTGTCT-------TTCGGTGTCTTTCGGTT
gi|14 : TTAAT-GATAGCACCGATCACTCATTCAAACAATAAGATAAAACAAACAACAACATCATCTTATTCTTT-TTGTTATAtttccagtcac
gi|4 : aATCCTTATTATCTGATATGTATCATTCCACTGTTGCTATATTTATTAGTTTGGTAATAAAAAATAAATAAACACAGTCAAGAA---TATAACA------TTAACC--TTTATTTATTTATTAAATAATCTTATTACCGCATGTA--TA---TA-CATTGTTGCTATATTTATT--TA--TTAAATGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAAAACCGAAATACACATGAATAATACCTATTAGAATAAAAATATGC-ATAAACAT-AAACCAATAACTTCTAGATTTATATTA--ATAATACATTTGATCAACCATTACTGATGTTTAAACAAAGAAACTTACGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGAAAGTAACTCGTAATAACTGAAAAAAGACATATTGACACAAATATTGGGTAAAC-A----CGCA-TCAAA--TCGTACATTTTTAAAAAG----------------------TGTT-----TTTG--C-AAAAACAAT-----TT---CAAAT---TCATATTTGATATTTA---------AAATAATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTA---------------------AGTGTCTTTCGG--------TATCTTTCG-GCTTTTTCGGTCAC
gi|7 : TTTATTAAATAATCTTAT--CTGGATATA---A----A-CATTGTTGCTATATTTATT--TA--TTAAATGAACTTGTGCATTACGTTAGAAAAGACAACTCCGGGAATACTGAA--------------TACCTATCAGAATA------TAC-ATTAACAT-CACAAAATAACTTTTAGTTTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAAAAATTTACGTAAA--TTTGATAAACA-TAAGTGTATCTCGGTTATATTCGAAAACGAAGGGAAATAACTCGTAAAAACCG---AAAGACACACTGACACAAATATTGGGTAAAA-A----CACG-TCAAA--TCGTACATTTTTAAAA-G---T------------------TTTT-----TTTGTCC-AAAAACAAT-----TT---TAAA----TCATATCTGATATAAA---------AAATAATAAAAACATGATCATTTATGCCTTAAATAGCTAAATCTA---------------------GGTGTCTTTCAGTTATCAAGTGTCTTTTG-GTTTTT-CAGTCAC
gi|6 : AAAGACACCT----GATCACCGAAAGACACCTAGATT-TAGCTAT-----TTAAGGCATAA-ATGATCATGTTTCTATTA--TTTTA----TACATCAGAATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGCAACTTACGTAAA--TTTGATAAACA-TAAGTCTCTTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCG---AAAGACACACTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--GCGTACATTTTTAAAA-GTTTT------------------TTTT-----TTTG--CAAAAAACAAT-----TT---CATAT---TCACATCGGATATATA---------AAATAATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG----GTGTAT-------TTCGAT-TTTTCCAGTCA
gi|8 : gCCTATCAGAACACAAATATAC-ATAAACAT-AACCCAATTATTTCTAGATTTATTTTG--ATAATACCCTTATTTAATCACT-TTGATGTTTAAACAAAGAAACAGGTGTAAT--TTTGGTAAAAAGTATTTGTATTTTGATTATAATCATAATT-AAGGGAAGTAAATTTTAAAAAACA---AAGTACACATTGCCACAGATATTAGGTAAAATA----AGCT-TCAAG--TTATACA-TTTTGATATG---TGA----------------TTTT-----TTT---C-AAAAAC-AT-----TT---AAGAT---GCATATCCGATACATT---------AAATAAATGAAACTTGATTATTTAAGCGTTAAATAACTATGGTTGG----GT---A-------TTCTGCATCTTTTGGTTATCAGTTGTCTTTCA-GTTTTTCCAGTCACcgggttttccagtcaccgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
gi|9 : AATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGTTATTAACATAAA--TTTGATAAAAA-TAAGTGTATTTTGGTTTTTATTGAAATC-AAGGGAAGTAACTCATAATAACCA---AAAGACACATTGACACAAA-ATT-TGGAAAA-A----CGCA-TCAAA--TCGTACATTTTTAAAAAA---T------------------TTTT-----TTTA--A-AAAA-CAAT-----TT---TAAAT---TCATATCTGATACATA---------ATGTAATAGAAACTTGATCAATAATGCCTTAAATAGCT-AATCTA---------------------GGTGTCTTTCGGTTATCAGGCGTCTTTCG-GTTTTTCCAGTCACC
gi|10 : ATAAACA-TAAATGTATTTCGGTTATGATCGAAATC-AAGGGAAGTAACTCGTAATAACCG---AAAGACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTT-AAATG---T------------------TTTTTTTTATTTG--C-AAAAACAAT-----TT---TAAAT---TCATATCTGATATACA---------AAATAATAGAAACATGATCAGTTATGCCTTAAATAGCTAAATCTAG----GTGTCT-------TTCGGTGTCTTTCTGTTATCAAGTGTCTTTCGTTTTTTTCCAGTCCCC
gi|11 : GTAAAA-GTTATCACAGTCAAACTTTGT-CATCTTTAAGA-A---T---------------------------------C-AAAAACAAT-----TT---TAAAT---TCATATCTGATACATA---------ATATAATAGAAACTTGATCATTAATGCCTTAAATAGCTAAATCTAGGTGTCT-TTTGGTGTATTTTGGTGTCTTTCGGTAATCAGGTGTCTTTAG-GTTTTTCCAGTCAC
gi|12 : gTAAAA-A----CATA-TCAAA--TCGTACATTTTTAAAAAG---T------------------TTTT-----TT-G--T-AAAAACAAT-----TT---CAAAT---TCATATCTGATATATAAAATAAATTAAATAATAGAAACATGATCATTTATGCCTTAAATAGCAAAATCTAG-----G-TCT-------TTCGGTATCTTTCGG
gi|6 : A-TCAAA--TT-TACGT----AAGTTG---C------------------TTTG-----TTTA----AACATCAGTAATGGTTGACCAAATGTATTAT-TCTGATGTATA---------AAATAATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTA---------------------GGTGTCTTTCGGTGATCAGGTGTCTTTCG-GGTTTTCCAGTCACCatttccagtcac
gi|6 : gtgactggaaaaatcgaaatacacctagatttagctatttaaggcataaatgatcatgtttctattattttatatatccgatgtgaatatgaaattgttttttgcaaaaaaaaaaacttttaaaaatgtacgctttgatgcgtttttacccaatatttgtgtcagtgtgtctttcggttattacgagttacttcccttgatttcgattataaccgaaagagacttatgtttAGGTGTATTTCG-ATTTTTCCAGTCACgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGAAACTTAAACATTGACTTAAATAGCTATTTATGAGTGTATTAGCTATTTATGAGTGTATTTTGATGTTTTTCGGTTATTGCACGTCTCGTTTTTTCCCAATCA
Unaligned ( gi|15 ): TCAAAAAGAGCTTTAATAAGAAGGAGGCTTAAATGAAAAGCACCATGTATGATATTGAAATAAAGAT
Unaligned ( gi|16 ): AAAATAGAGGATGTGATTGCTAAAATAAGCTAGTAAACATGCACA
Alignments
lowQualScore : 2 2 2 4444444444444444 1 2222222222 11 11 5555555555 1111 111 22222222 1111111 11111111 3333333333333333333333333333 111111111 444444444444444444444
lowQualScore : 4 0 0 3 4 4 2 3 0 4 5555555555555555 2 1 1 5555555555 1 11 11 9999999999 0 4444 1 0 444 1 44444444 3 5555555 6 99999 1 1 0 3 0 2 0 66 66 0 4 4 777 888888 3 55 3 11111111 1111111111111111111111111111 3 444444444 0 777777777777777777777 4 0 5
lowQualScore : . . . . . . . . . . ................ . . . .......... . .. .. .......... . .... . . ... . ........ . ....... . ..... . . . . . . . .. .. . . . ... ...... . .. . ........ ............................ . ......... . ..................... . . .
lowQualScore : 0 0 0 0 0 0 5 0 0 0 5555555555555555 5 2 0 4444444444 0 00 00 5555555555 8 8888 0 8 000 0 22222222 5 3333333 7 33333 7 6 3 6 1 6 1 11 11 6 0 0 000 222222 6 00 6 77777777 9999999999999999999999999999 6 555555555 5 000000000000000000000 9 2 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGACATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAA-TTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACCTTTATTTATTTATT--------AAATAATCTTATTACCGGATATAT----AT-A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT---TTTT-----T---------------TTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
Reference ( family-3363 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTTATCATATAAGTGAATAATTTTATCTA--TTGA-AT--ATTGATATGTTTTCATATTAATGATTAGCACTGATCACTCATTCAGACAATAAGATNAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATA-------CCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAANAATAAATAAACACAGTCAAGAA---TATAACATTNACCTTTATTTATTTATT--------AAATAATCTTATTACCGGATATAT----AT-A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATAAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT---TTTT-----T---------------TTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|1 : TATTTGTGTCGTAATTCTTATTTCCTTTTCCACTTGTTTCACGCCTTTGCAATTTAAATTACTTTATATATTATAAAGATGTATATCTTATTTGGTTTGAGAACAAAATGAGATATGTGCATTTTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTAAATAATTTTATTTA--TTGATATTTATTGATATGTTTTCATTTTAATTAAAAGCACTGATCATTCGTTCAGACAATAAGATTAAACAA--A-C-A---TATTA--TTAT--TTGTTGTTATAATTTTATCTATTAATACTATCCTTATTATCTGATATGTATATGT---ACTGTTGATATATTTATTAGTTTTATTATAAAAAATAAATAAACACAGTCAAGTA---TATAACATTTACCTTTATTTATTTATT--------AAATAATCTTATTACCGGATATAT----AT-A-CATTGTTGCTATATTTATTTTTTAA--A--TGAACTTTTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTAAATTATACCTATCAGAATAAAAATATACATAATCATTACCCAATAACTTCTAGATTTATATCA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACATAAA--TTTGATAAACA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACTGAAA---GACAAGTTGACACAAATATTGTGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--CGT---TTTT-----T---------------TTG--C-AAAATCAATTTCAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAAAAGCTAAATCTAG--CT-TC----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|10 : agtagtgtaactcatacgtacagatatgttaatgcgtgggtgtatcggaagcacggggtgaaaattcaaaacggggtgaacaattatttgactttcggttattaataaaataccataacatcatttgacaatttaaatttttattaatacgacatgaatactgatatattgacatcattatacatatttacaatgagcgatcaaagcgtgtaacaatgtcttcattgacactgtgattatccatcaagtttagatgtgtttcatactgaaactatttaacgctattcccattcattttcttcttcagactcttcttcttcagatactgcttcgtattttataATAAACA-TAAATGTATTTCGGTTATGATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTT-A-AA--TGT---TTTTTTTTAT---------------TTG--C-AAAAACAATTTTAA-ATTCATATCTGATATACAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAATAGCTAAATCTAGGTGT-C-----------TTTCGGTGTCTTTCTGTTATCAAGTGTCTTTCGTTTTTTTCCAGTCCCC
gi|11 : GGTAAAA-GTTATCACAGTCAAACTTTGT-CATCTTTAAGAA--T-----------------------------------C-AAAAACAATTTTAA-ATTCATATCTGATACATAATAT---------AATAGAAACTTGATCATTAATGCCTTAAATAGCTAAATCTAG--GTGTCTTTTGGTGTATTTTGGTGTCTTTCGGTAATCAGGTGTCTTTAG-GTTTTTCCAGTCAC
gi|12 : TAAAA-A----CATA-TCAAA--TCGTACATTTTTAA-AA--AGT---TTTT-----T---------------T-G--T-AAAAACAATTTCAA-ATTCATATCTGATATATAAAATAAATTAAATAATAGAAACATGATCATTTATGCCTTAAATAGCAAAATCTAG--GT-C-----------TTTCGGTATCTTTCGG
gi|14 : ATTAATGAT-AGCACCGATCACTCATTCAAACAATAAGATAAAACAAACAACAA---CATCATCTTATTCTTTTTGTTATA-------atttccagtcac
gi|2 : TAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTGAATAATTTCATTTA--TTGACATTTATTGATATTTTTTCATATTAATGATAAGCATTGATCACTCATTCAGACAATTAGATTAAACAA--A-C-A---TATAA--TTAT--GTGTTGTTATA---------------ACTATCCTTACTATGTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAATAATAAATAGACACAGTCAAGAA---TATTACAGTCACTTTTATTTATTTATTTATTTATTAAATAATCTTATTACCGGATATATTTATATTA-TATTGTTGCTATATTTATTTATTAA--A--TGAACCTGTGTATTACAGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACAATAACATAACTCAATAACTTCTGGATTTATATTA--ACAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTTTTTAAAAGTTTTATAAAAA-TAA-TGTATTTCGGTTATAATTGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACACTTATTGGGTAAAA------TGCA-TCAAA--TATTACATTTTTAA-AA--TGTATTTTTT-----TTTGTTTTTTGTTTTTTTG--T-AAAAACAATTTTAA-ATTCATATATGATATATAAAAT---------AATAGAAACATGATCATGTATGCCTTAAATAGCTAAA----------------------TTTCGGTGTCTTTTGTTT
gi|3 : ttATAATTATACTTATCATCTGAGTGAATAATTTT--CTAATTTGA-AA--ATT---ATGTTTTTATATTAATGATTAGCAATGATCACTCATTCAGACAATAAGATAAAAAAA--AAC-AACATATAA--TTAT--TTTTTGTTATAACTTTATTCATTAATACTATCCTTATTATCTGATATGTATATAT----------------TTGTTAGTTTTGTTATAAATAATAAA--AA---AGTTAAAAAAAATACAA--TTCACCTTTATTTATTCA------------ATAATCTTATTACCGGATATAT----TT-AATATTGTCGCTTTATTTATCGATTAATTAGTTGAACATGTGCATTACGGTAGAACAGACAACTCTGGGAATAC-GAAAAACACTTGAATTGTACCTATCAGAACAAAAATACACATTAACATAACCCAATAACTTGTAGATTTATATTA--ATAATACATTTGATCAACCATTATTGATGTTTAAATAAAGTTATTAATGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCAAAATC-AAGGGAAGAAACTCGTAATAACCGAAA---GACACACTGGCACAAAAATTGGGTAAAA-A----C-CA-TCAAA--TCGTACATATTTAA-AA--TGT---TTTT-----T---------------TTTTTC-AAAAACTATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATAATTTATGCCTTAAATAGCTAAATTTAG--GT--------------------GTCTTTCGGT--------GTCTTTCG-GTTTTTCCAGTCACtttccag
gi|4 : ATCCTTATTATCTGATATGTAT-CATTCCACTGTTGCTATATTTATTAGTTTGGTAATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACCTTTATTTATTTATT--------AAATAATCTTATTACCGCATGTAT----AT-A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAAAACCGAAATACACATGAATAATACCTATTAGAATAAAAATATGCATAAACATAAACCAATAACTTCTAGATTTATATTA--ATAATACATTTGATCAACCATTACTGATGTTTAAACAAAGAAACTTACGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGAAAGTAACTCGTAATAACTGAAAAAAGACATATTGACACAAATATTGGGTAAAC-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AGT---GTTT-----T---------------T-G--C-AAAAACAATTTCAA-ATTCATATTTGATATTTAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAA--GT--------------------GTCTTTCGGT--------ATCTTTCG-GCTTTTTCGGTCAC
gi|5 : TACTTAAATAAAATAATTGTACTTATCATATAAGTGAATAATTTTAT----------GT--ATTGATATGTTTTCATATTAATGATTAACACTGACCACTCATTCAGACAATAAGATTAAACAA--A-C-A---TATTA--TTAT--TTGTTGTTAT--------CCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGATTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACCTTTAATTATTAATT--------AAATAATCTTATAACCGGATATAT----AT-A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACTGAAATACACTTGAATTATACCTATCAGAATAAAAACATACATAAATATAGCCCAATAACTTCTAGATTTATATTA--ATAAAACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTATGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTAATAATTGAAATA-AAGGGAAGTAACTCGTTATAACTGAAA---GACACATTGACACAAATATTGAGT
gi|6 : AAAGACACCT----GATCACCGAAAGACACCTAGATT-TAGCTAT-----TTAAGGCATAAATGATCATGTTTCTATTATTT-TA----TACATCAGAATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGCAACTTACGTAAA--TTTGATAAACA-TAAGTCTCTTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--GCGTACATTTTTAA-AAGTTTT---TTTT-----T---------------TTG--CAAAAAACAATTTCAT-ATTCACATCGGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GTGTA----------TTTCGAT-TTTTCCAGTCA
gi|7 : gTTTATT--------AAATAATCTTAT--CTGGATATA-----A--A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGTTAGAAAAGACAACTCCGGGAATACTGAA--------------TACCTATCAGAATA------TACATTAACATCACAAAATAACTTTTAGTTTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAAAAATTTACGTAAA--TTTGATAAACA-TAAGTGTATCTCGGTTATATTCGAAAACGAAGGGAAATAACTCGTAAAAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CACG-TCAAA--TCGTACATTTTTAA-AA---GT---TTTT-----T---------------TTGTCC-AAAAACAATTTTAA-A-TCATATCTGATATAAAAAAT---------AATAAAAACATGATCATTTATGCCTTAAATAGCTAAATCTA----------------------GGTGTCTTTCAGTTATCAAGTGTCTTTTG-GTTTTT-CAGTCACcgggttttccagtcaccgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
gi|8 : CCTATCAGAACACAAATATACATAAACATAACCCAATTATTTCTAGATTTATTTTG--ATAATACCCTTATTTAATCACT-TTGATGTTTAAACAAAGAAACAGGTGTAAT--TTTGGTAAAAAGTATTTGTATTTTGATTATAATCATAATT-AAGGGAAGTAAATTTTAAAAAACAAAG---TACACATTGCCACAGATATTAGGTAAAATA----AGCT-TCAAG--TTATACA-TTTTGA-TA--TGTGA-TTTT-----T---------------TT---C-AAAAACA--TTTAAGATGCATATCCGATACATTAAAT---------AAATGAAACTTGATTATTTAAGCGTTAAATAACTATGGTTGG--G--T-----------ATTCTGCATCTTTTGGTTATCAGTTGTCTTTCA-GTTTTTCCAGTCAC
gi|9 : AATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGTTATTAACATAAA--TTTGATAAAAA-TAAGTGTATTTTGGTTTTTATTGAAATC-AAGGGAAGTAACTCATAATAACCAAAA---GACACATTGACACAAA-ATTTGG-AAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AAT---TTTT-----T---------------TTA----AAAAACAATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATCAATAATGCCTTAAATAGCTAA-TCTAG--GT--------------------GTCTTTCGGTTATCAGGCGTCTTTCG-GTTTTTCCAGTCACC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAAACTTAAACATTGACTTAAATAGCTATTTATGAGTGTATTAGCTATTTATGAGTGTATTTTGATGTTTTTCGGTTATTGCACGTCTCGTTTTTTCCCAATCA
Unaligned ( gi|15 ): TCAAAAAGAGCTTTAATAAGAAGGAGGCTTAAATGAAAAGCACCATGTATGATATTGAAATAAAGAT
Unaligned ( gi|16 ): AAAATAGAGGATGTGATTGCTAAAATAAGCTAGTAAACATGCACA
Alignments
lowQualScore : 1 1 1 1111111 11111 1111 111 11 11 4444444444 1111 111 22222222 1111111 33333333333333333333333 111111 111111111 444444444444444444444
lowQualScore : 1 5 5 1 1 1 1 1 5 1 5555555 99999 2 8 1 2222 0 8 444 1 11 11 5555555555 0 4444 1 0 444 1 99999999 3 5555555 6 99999 1 1 0 3 0 1 0 66 66 0 4 4 777 3 7777 3 55 3 22222222222222222222222 99999 333333 3 444444444 0 777777777777777777777 4 0 5
lowQualScore : . . . . . . . . . . ....... ..... . . . .... . . ... . .. .. .......... . .... . . ... . ........ . ....... . ..... . . . . . . . .. .. . . . ... . .... . .. . ....................... ..... ...... . ......... . ..................... . . .
lowQualScore : 0 0 5 0 0 0 0 0 5 0 0000000 00000 5 8 4 6666 8 0 000 0 00 00 5555555555 8 8888 4 8 000 0 00000000 5 3333333 7 33333 7 6 3 6 1 0 1 11 11 6 0 0 000 6 7777 6 00 6 22222222222222222222222 11111 777777 6 555555555 5 000000000000000000000 9 2 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
Reference ( family-3363 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGACATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAA-TTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|1 : TATTTGTGTCGTAATTCTTATTTCCTTTTCCACTTGTTTCACGCCTTTGCAATTTAAATTACTTTATATATTATAAAGATGTATATCTTATTTGGTTTGAGAACAAAATGAGATATGTGCATTTTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTAAATAATTTTATTTA--TTGATATTTATTGATATGTTTTCATTTTAATTAAAAGCACTGATCATTCGTTCAGACAATAAGATTAAAC-A--AAC-A---TATTA--TTAT--TTGTTGTTATAATTTTATCTATTAATACTATCCTTATTATCTGATATGTATATGT---ACTGTTGATATATTTATTAGTTTTATTATAAAAAATAAATAAACACAGTCAAGTA---TATAACATTTACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTTTTAA--A--TGAACTTTTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTAAATTATACCTATCAGAATAAAAATATACATAATCATTACCCAATAACTTCTAGATTTATATCA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACATAAA--TTTGATAAACA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACTGAAA---GACAAGTTGACACAAATATTGTGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--CGT------------------TTTT-----TTTG--C-AAAATCAATTTCAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAAAAGCTAAATCTAG--CT-TC----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|10 : agtagtgtaactcatacgtacagatatgttaatgcgtgggtgtatcggaagcacggggtgaaaattcaaaacggggtgaacaattatttgactttcggttattaataaaataccataacatcatttgacaatttaaatttttattaatacgacatgaatactgatatattgacatcattatacatatttacaatgagcgatcaaagcgtgtaacaatgtcttcattgacactgtgattatccatcaagtttagatgtgtttcatactgaaactatttaacgctattcccattcattttcttcttcagactcttcttcttcagatactgcttcgtattttataATAAACA-TAAATGTATTTCGGTTATGATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTT-A-AA--TGT------------------TTTTTTTTATTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATACAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAATAGCTAAATCTAGGTGT-C-----------TTTCGGTGTCTTTCTGTTATCAAGTGTCTTTCGTTTTTTTCCAGTCCCC
gi|11 : GGTAAAA-GTTATCACAGTCAAACTTTGT-CATCTTTAAGAA--T-----------------------------------C-AAAAACAATTTTAA-ATTCATATCTGATACATAATAT---------AATAGAAACTTGATCATTAATGCCTTAAATAGCTAAATCTAG--GTGTCTTTTGGTGTATTTTGGTGTCTTTCGGTAATCAGGTGTCTTTAG-GTTTTTCCAGTCAC
gi|12 : TAAAA-A----CATA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------TTTT-----TT-G--T-AAAAACAATTTCAA-ATTCATATCTGATATATAAAATAAATTAAATAATAGAAACATGATCATTTATGCCTTAAATAGCAAAATCTAG--GT-C-----------TTTCGGTATCTTTCGG
gi|14 : ATTAATGAT-AGCACCGATCACTCATTCAAACAATAAGATAAAACAAACAACAA---CATCATCTTATTCTTTTTGTTATAatttccagtcac
gi|2 : TAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTGAATAATTTCATTTA--TTGACATTTATTGATATTTTTTCATATTAATGATAAGCATTGATCACTCATTCAGACAATTAGATTAAAC-A--AAC-A---TATAA--TTAT--GTGTTGTTATA---------------ACTATCCTTACTATGTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAATAATAAATAGACACAGTCAAGAA---TATTACAGTCACTTTTATTTATTTATTTATTTATTAAATAATCTTATTACCGGATATATTTATATTA-TATTGTTGCTATATTTATTTATTAA--A--TGAACCTGTGTATTACAGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACAATAACATAACTCAATAACTTCTGGATTTATATTA--ACAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTTTTTAAAAGTTTTATAAAAA-TAA-TGTATTTCGGTTATAATTGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACACTTATTGGGT-AAA-A----TGCA-TCAAA--TATTACATTTTTAA-AA--TGTATTTTTTTTTGTTTTTTGTTTT-----TTTG--T-AAAAACAATTTTAA-ATTCATATATGATATATAAAAT---------AATAGAAACATGATCATGTATGCCTTAAATAGCTAAA----------------------TTTCGGTGTCTTTTGTTT
gi|3 : ttATAATTATACTTATCATCTGAGTGAATAATTTT--CTAATTTGAAA---ATT---ATGTTTTTATATTAATGATTAGCAATGATCACTCATTCAGACAATAAGATAAAAAAA--AAC-AACATATAA--TTAT--TTTTTGTTATAACTTTATTCATTAATACTATCCTTATTATCTGATATGTATATAT----------------TTGTTAGTTTTGTTATAAATAATAAA--AA---AGTTAAAAAAAATACAA--TTCACC--------TTTATTTATTCA----ATAATCTTATTACCGGATATA--TT---TAATATTGTCGCTTTATTTATCGATTAATTAGTTGAACATGTGCATTACGGTAGAACAGACAACTCTGGGAATAC-GAAAAACACTTGAATTGTACCTATCAGAACAAAAATACACATTAACATAACCCAATAACTTGTAGATTTATATTA--ATAATACATTTGATCAACCATTATTGATGTTTAAATAAAGTTATTAATGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCAAAATC-AAGGGAAGAAACTCGTAATAACCGAAA---GACACACTGGCACAAAAATTGGGTAAAA-A----C-CA-TCAAA--TCGTACATATTTAA-AA--TGT------------------TTTT-----TTTTTTC-AAAAACTATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATAATTTATGCCTTAAATAGCTAAATTTAG--GT--------------------GTCTTTCGGT--------GTCTTTCG-GTTTTTCCAGTCACtttccag
gi|4 : ATCCTTATTATCTGATATGTAT-CATTCCACTGTTGCTATATTTATTAGTTTGGTAATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTATTTATTTATTAAATAATCTTATTACCGCATGTA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAAAACCGAAATACACATGAATAATACCTATTAGAATAAAAATATGCATAAACATAAACCAATAACTTCTAGATTTATATTA--ATAATACATTTGATCAACCATTACTGATGTTTAAACAAAGAAACTTACGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGAAAGTAACTCGTAATAACTGAAAAAAGACATATTGACACAAATATTGGGTAAAC-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------GTTT-----TT-G--C-AAAAACAATTTCAA-ATTCATATTTGATATTTAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAA--GT--------------------GTCTTTCGGT--------ATCTTTCG-GCTTTTTCGGTCAC
gi|5 : TACTTAAATAAAATAATTGTACTTATCATATAAGTGAATAATTTTAT-------G-----TATTGATATGTTTTCATATTAATGATTAACACTGACCACTCATTCAGACAATAAGATTAAACAA--A-C-A---TATTA--TTAT--TTGTTGTTAT--------CCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGATTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTAATTATTAATTAAATAATCTTATAACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACTGAAATACACTTGAATTATACCTATCAGAATAAAAACATACATAAATATAGCCCAATAACTTCTAGATTTATATTA--ATAAAACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTATGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTAATAATTGAAATA-AAGGGAAGTAACTCGTTATAACTGAAA---GACACATTGACACAAATATTGAGT
gi|6 : AAAGACACCT----GATCACCGAAAGACACCTAGATT-TAGCTAT-----TTAAGGCATAAATGATCATGTTTCTATTATTT-TA----TACATCAGAATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGCAACTTACGTAAA--TTTGATAAACA-TAAGTCTCTTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--GCGTACATTTTTAA-AAGTTTT------------------TTTT-----TTTG--CAAAAAACAATTTCAT-ATTCACATCGGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GTGTA----------TTTCGAT-TTTTCCAGTCA
gi|7 : gTTTATTAAATAATCTTAT--CTGGATATA---A----A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGTTAGAAAAGACAACTCCGGGAATACTGAA--------------TACCTATCAGAATA------TACATTAACATCACAAAATAACTTTTAGTTTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAAAAATTTACGTAAA--TTTGATAAACA-TAAGTGTATCTCGGTTATATTCGAAAACGAAGGGAAATAACTCGTAAAAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CACG-TCAAA--TCGTACATTTTTAA-AA---GT------------------TTTT-----TTTGTCC-AAAAACAATTTTAA-A-TCATATCTGATATAAAAAAT---------AATAAAAACATGATCATTTATGCCTTAAATAGCTAAATCTA----------------------GGTGTCTTTCAGTTATCAAGTGTCTTTTG-GTTTTT-CAGTCACcgggttttccagtcaccgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
gi|8 : CCTATCAGAACACAAATATACATAAACATAACCCAATTATTTCTAGATTTATTTTG--ATAATACCCTTATTTAATCACT-TTGATGTTTAAACAAAGAAACAGGTGTAAT--TTTGGTAAAAAGTATTTGTATTTTGATTATAATCATAATT-AAGGGAAGTAAATTTTAAAAAACAAAG---TACACATTGCCACAGATATTAGGTAAAATA----AGCT-TCAAG--TTATACA-TTTTGA-TA--TGTGA----------------TTTT-----TTT---C-AAAAACA--TTTAAGATGCATATCCGATACATTAAAT---------AAATGAAACTTGATTATTTAAGCGTTAAATAACTATGGTTGG--G--T-----------ATTCTGCATCTTTTGGTTATCAGTTGTCTTTCA-GTTTTTCCAGTCAC
gi|9 : AATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGTTATTAACATAAA--TTTGATAAAAA-TAAGTGTATTTTGGTTTTTATTGAAATC-AAGGGAAGTAACTCATAATAACCAAAA---GACACATTGACACAAA-ATTTGG-AAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AAT------------------TTTT-----TTTA----AAAAACAATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATCAATAATGCCTTAAATAGCTAA-TCTAG--GT--------------------GTCTTTCGGTTATCAGGCGTCTTTCG-GTTTTTCCAGTCACC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAAACTTAAACATTGACTTAAATAGCTATTTATGAGTGTATTAGCTATTTATGAGTGTATTTTGATGTTTTTCGGTTATTGCACGTCTCGTTTTTTCCCAATCA
Unaligned ( gi|15 ): TCAAAAAGAGCTTTAATAAGAAGGAGGCTTAAATGAAAAGCACCATGTATGATATTGAAATAAAGAT
Unaligned ( gi|16 ): AAAATAGAGGATGTGATTGCTAAAATAAGCTAGTAAACATGCACA
Alignments
lowQualScore : 1 1 1 1111111 11111 1111111111 11 11 3333333333 1111 111 22222222 1111111 33333333333333333333333 111111 111111111 444444444444444444444
lowQualScore : 1 5 5 1 1 1 1 1 5 1 5555555 77777 2 8 1 0 5555555555 1 11 11 2222222222 0 4444 1 0 444 1 99999999 3 5555555 6 99999 1 1 0 3 0 1 0 66 66 0 4 4 777 3 7777 3 55 3 22222222222222222222222 99999 333333 3 444444444 0 777777777777777777777 4 0 5
lowQualScore : . . . . . . . . . . ....... ..... . . . . .......... . .. .. .......... . .... . . ... . ........ . ....... . ..... . . . . . . . .. .. . . . ... . .... . .. . ....................... ..... ...... . ......... . ..................... . . .
lowQualScore : 0 0 5 0 0 0 0 0 5 0 0000000 00000 5 8 4 8 6666666666 0 00 00 0000000000 8 8888 4 8 000 0 00000000 5 3333333 7 33333 7 6 3 6 1 0 1 11 11 6 0 0 000 6 7777 6 00 6 22222222222222222222222 11111 777777 6 555555555 5 000000000000000000000 9 2 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
Reference ( family-3363 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|1 : TATTTGTGTCGTAATTCTTATTTCCTTTTCCACTTGTTTCACGCCTTTGCAATTTAAATTACTTTATATATTATAAAGATGTATATCTTATTTGGTTTGAGAACAAAATGAGATATGTGCATTTTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTAAATAATTTTATTTA--TTGATATTTATTGATATGTTTTCATTTTAATTAAAAGCACTGATCATTCGTTCAGACAATAAGATTAAACAA--A-C-A---TATTA--TTAT--TTGTTGTTATAATTTTATCTATTAATACTATCCTTATTATCTGATATGTATATGT---ACTGTTGATATATTTATTAGTTTTATTATAAAAAATAAATAAACACAGTCAAGTA---TATAACATTTACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTTTTAA--A--TGAACTTTTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTAAATTATACCTATCAGAATAAAAATATACATAATCATTACCCAATAACTTCTAGATTTATATCA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACATAAA--TTTGATAAACA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACTGAAA---GACAAGTTGACACAAATATTGTGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--CGT------------------TTTT-----TTTG--C-AAAATCAATTTCAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAAAAGCTAAATCTAG--CT-TC----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|10 : agtagtgtaactcatacgtacagatatgttaatgcgtgggtgtatcggaagcacggggtgaaaattcaaaacggggtgaacaattatttgactttcggttattaataaaataccataacatcatttgacaatttaaatttttattaatacgacatgaatactgatatattgacatcattatacatatttacaatgagcgatcaaagcgtgtaacaatgtcttcattgacactgtgattatccatcaagtttagatgtgtttcatactgaaactatttaacgctattcccattcattttcttcttcagactcttcttcttcagatactgcttcgtattttataATAAACA-TAAATGTATTTCGGTTATGATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTT-A-AA--TGT------------------TTTTTTTTATTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATACAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAATAGCTAAATCTAGGTGT-C-----------TTTCGGTGTCTTTCTGTTATCAAGTGTCTTTCGTTTTTTTCCAGTCCCC
gi|11 : GGTAAAA-GTTATCACAGTCAAACTTTGT-CATCTTTAAGAA--T-----------------------------------C-AAAAACAATTTTAA-ATTCATATCTGATACATAATAT---------AATAGAAACTTGATCATTAATGCCTTAAATAGCTAAATCTAG--GTGTCTTTTGGTGTATTTTGGTGTCTTTCGGTAATCAGGTGTCTTTAG-GTTTTTCCAGTCAC
gi|12 : TAAAA-A----CATA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------TTTT-----TT-G--T-AAAAACAATTTCAA-ATTCATATCTGATATATAAAATAAATTAAATAATAGAAACATGATCATTTATGCCTTAAATAGCAAAATCTAG--GT-C-----------TTTCGGTATCTTTCGG
gi|14 : ATTAATGAT-AGCACCGATCACTCATTCAAACAATAAGATAAAACAAACAACAA---CATCATCTTATTCTTTTTGTTATAatttccagtcac
gi|2 : TAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTGAATAATTTCATTTA--TTGACATTTATTGATATTTTTTCATATTAATGATAAGCATTGATCACTCATTCAGACAATTAGATTAAAC-A--AAC-A---TATAA--TTAT--GTGTTGTTATA---------------ACTATCCTTACTATGTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAATAATAAATAGACACAGTCAAGAA---TATTACAGTCACTTTTATTTATTTATTTATTTATTAAATAATCTTATTACCGGATATATTTATATTA-TATTGTTGCTATATTTATTTATTAA--A--TGAACCTGTGTATTACAGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACAATAACATAACTCAATAACTTCTGGATTTATATTA--ACAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTTTTTAAAAGTTTTATAAAAA-TAA-TGTATTTCGGTTATAATTGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACACTTATTGGGT-AAA-A----TGCA-TCAAA--TATTACATTTTTAA-AA--TGTATTTTTTTTTGTTTTTTGTTTT-----TTTG--T-AAAAACAATTTTAA-ATTCATATATGATATATAAAAT---------AATAGAAACATGATCATGTATGCCTTAAATAGCTAAA----------------------TTTCGGTGTCTTTTGTTT
gi|3 : ttATAATTATACTTATCATCTGAGTGAATAATTTT--CTAATTTGAAA---ATT---ATGTTTTTATATTAATGATTAGCAATGATCACTCATTCAGACAATAAGATAAAAAAA--AAC-AACATATAA--TTAT--TTTTTGTTATAACTTTATTCATTAATACTATCCTTATTATCTGATATGTATATAT----------------TTGTTAGTTTTGTTATAAATAATAAA--AA---AGTTAAAAAAAATACAA--TTCACC--------TTTATTTATTCA----ATAATCTTATTACCGGATATA--TT---TAATATTGTCGCTTTATTTATCGATTAATTAGTTGAACATGTGCATTACGGTAGAACAGACAACTCTGGGAATAC-GAAAAACACTTGAATTGTACCTATCAGAACAAAAATACACATTAACATAACCCAATAACTTGTAGATTTATATTA--ATAATACATTTGATCAACCATTATTGATGTTTAAATAAAGTTATTAATGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCAAAATC-AAGGGAAGAAACTCGTAATAACCGAAA---GACACACTGGCACAAAAATTGGGTAAAA-A----C-CA-TCAAA--TCGTACATATTTAA-AA--TGT------------------TTTT-----TTTTTTC-AAAAACTATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATAATTTATGCCTTAAATAGCTAAATTTAG--GT--------------------GTCTTTCGGT--------GTCTTTCG-GTTTTTCCAGTCACtttccag
gi|4 : ATCCTTATTATCTGATATGTAT-CATTCCACTGTTGCTATATTTATTAGTTTGGTAATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTATTTATTTATTAAATAATCTTATTACCGCATGTA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAAAACCGAAATACACATGAATAATACCTATTAGAATAAAAATATGCATAAACATAAACCAATAACTTCTAGATTTATATTA--ATAATACATTTGATCAACCATTACTGATGTTTAAACAAAGAAACTTACGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGAAAGTAACTCGTAATAACTGAAAAAAGACATATTGACACAAATATTGGGTAAAC-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------GTTT-----TT-G--C-AAAAACAATTTCAA-ATTCATATTTGATATTTAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAA--GT--------------------GTCTTTCGGT--------ATCTTTCG-GCTTTTTCGGTCAC
gi|5 : TACTTAAATAAAATAATTGTACTTATCATATAAGTGAATAATTTTAT-------G-----TATTGATATGTTTTCATATTAATGATTAACACTGACCACTCATTCAGACAATAAGATTAAACAA--A-C-A---TATTA--TTAT--TTGTTGTTAT--------CCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGATTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTAATTATTAATTAAATAATCTTATAACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACTGAAATACACTTGAATTATACCTATCAGAATAAAAACATACATAAATATAGCCCAATAACTTCTAGATTTATATTA--ATAAAACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTATGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTAATAATTGAAATA-AAGGGAAGTAACTCGTTATAACTGAAA---GACACATTGACACAAATATTGAGT
gi|6 : AAAGACACCT----GATCACCGAAAGACACCTAGATT-TAGCTAT-----TTAAGGCATAAATGATCATGTTTCTATTATTT-TA----TACATCAGAATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGCAACTTACGTAAA--TTTGATAAACA-TAAGTCTCTTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--GCGTACATTTTTAA-AAGTTTT------------------TTTT-----TTTG--CAAAAAACAATTTCAT-ATTCACATCGGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GTGTA----------TTTCGAT-TTTTCCAGTCA
gi|7 : gTTTATTAAATAATCTTAT--CTGGATATA---A----A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGTTAGAAAAGACAACTCCGGGAATACTGAA--------------TACCTATCAGAATA------TACATTAACATCACAAAATAACTTTTAGTTTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAAAAATTTACGTAAA--TTTGATAAACA-TAAGTGTATCTCGGTTATATTCGAAAACGAAGGGAAATAACTCGTAAAAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CACG-TCAAA--TCGTACATTTTTAA-AA---GT------------------TTTT-----TTTGTCC-AAAAACAATTTTAA-A-TCATATCTGATATAAAAAAT---------AATAAAAACATGATCATTTATGCCTTAAATAGCTAAATCTA----------------------GGTGTCTTTCAGTTATCAAGTGTCTTTTG-GTTTTT-CAGTCACcgggttttccagtcaccgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
gi|8 : CCTATCAGAACACAAATATACATAAACATAACCCAATTATTTCTAGATTTATTTTG--ATAATACCCTTATTTAATCACT-TTGATGTTTAAACAAAGAAACAGGTGTAAT--TTTGGTAAAAAGTATTTGTATTTTGATTATAATCATAATT-AAGGGAAGTAAATTTTAAAAAACAAAG---TACACATTGCCACAGATATTAGGTAAAATA----AGCT-TCAAG--TTATACA-TTTTGA-TA--TGTGA----------------TTTT-----TTT---C-AAAAACA--TTTAAGATGCATATCCGATACATTAAAT---------AAATGAAACTTGATTATTTAAGCGTTAAATAACTATGGTTGG--G--T-----------ATTCTGCATCTTTTGGTTATCAGTTGTCTTTCA-GTTTTTCCAGTCAC
gi|9 : AATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGTTATTAACATAAA--TTTGATAAAAA-TAAGTGTATTTTGGTTTTTATTGAAATC-AAGGGAAGTAACTCATAATAACCAAAA---GACACATTGACACAAA-ATTTGG-AAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AAT------------------TTTT-----TTTA----AAAAACAATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATCAATAATGCCTTAAATAGCTAA-TCTAG--GT--------------------GTCTTTCGGTTATCAGGCGTCTTTCG-GTTTTTCCAGTCACC
blockSeqs : A . . A T A G A . A ATTTA ACATT G A A ACAACAA C TC TC AACTTTATTC TCCA T AAA C TTTATTTA T TTTATAT A TTAGT C T A T GA AG G G AAA T TTAT G CT G TGTATTTTTTTTTGTTTTTTG TTTTA TTTTC G AAATTAAAT GTGTCTTTTGGTGTATTTT T T
blockSeqs : T CTAAT AAA G T T AACAACA A . . CC A T . C . T TT . A C A G T . . . . . . . . . . GTTTT . TGTCC . . GTGTCTTTC A .
blockSeqs : T AT . . T A AACA A . . A A A . A . T TA . A T T A A . . . . . . . . . . TGTGA . TGCA . . GTGTATTTC T .
blockSeqs : . T ACA T . . . A . A . A TA . A C T A A . . . . . . . . . . TGT . TGC . . GTCTTTC C .
blockSeqs : . A . A T G . G . . . . . . . . . . AGT . TGT . . GTATTC T .
blockSeqs : . . . T . . . . . . . . . . TGT . GT . . TTTC T .
blockSeqs : A . . . . . . . . . . AGT . GC . . GT T .
blockSeqs : . . . . . . . . . . AAT . TC . . GT .
blockSeqs : . . . . . . . . GT . TA . . GT .
blockSeqs : . . . . . T . C . . .
blockSeqCons : ACCA****** TGC*** GTTTTC***************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAA--AAC-A---TATNA--TTAT--TTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAG--GT-T-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAAACCA------TATNA--TTAT--TTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTGC---AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAGGTTTTC---------------GGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAAACTTAAACATTGACTTAAATAGCTATTTATGAGTGTATTAGCTATTTATGAGTGTATTTTGATGTTTTTCGGTTATTGCACGTCTCGTTTTTTCCCAATCA
Unaligned ( gi|15 ): TCAAAAAGAGCTTTAATAAGAAGGAGGCTTAAATGAAAAGCACCATGTATGATATTGAAATAAAGAT
Unaligned ( gi|16 ): AAAATAGAGGATGTGATTGCTAAAATAAGCTAGTAAACATGCACA
Alignments
lowQualScore : 1 1 1 1111111 11111 55555555555 3333333333 1111 111 22222222 1111111 33333333333333333333333 111111 111111111 55555555555555555
lowQualScore : 1 5 5 1 1 1 1 1 5 1 5555555 77777 2 8 1 88888888888 1 5 2222222222 0 4444 1 0 444 1 99999999 3 5555555 6 99999 1 1 0 3 0 1 0 66 66 0 4 4 777 3 7777 3 55 3 22222222222222222222222 99999 333333 3 444444444 0 00000000000000000 4 0 5
lowQualScore : . . . . . . . . . . ....... ..... . . . ........... . . .......... . .... . . ... . ........ . ....... . ..... . . . . . . . .. .. . . . ... . .... . .. . ....................... ..... ...... . ......... . ................. . . .
lowQualScore : 0 0 5 0 0 0 0 0 5 0 0000000 00000 5 8 4 00000000000 0 0 0000000000 8 8888 4 8 000 0 00000000 5 3333333 7 33333 7 6 3 6 1 0 1 11 11 6 0 0 000 6 7777 6 00 6 22222222222222222222222 11111 777777 6 555555555 5 33333333333333333 9 2 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAAA-CAA------CATATTATTATTTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAGGT-------------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
Reference ( family-3363 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANTTGTGTCGTAGTTCCTATCTCCTTTTCCACTTGTTTCACGCNCTTGCAATTTAAACTACTTCATATATTACAANGATGTACATCNTATTTGGTTNGAGAANAAAATGAGATATGTGCATTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTNATCATATAAGTGAATAATTTTATTTA--TTGANATTTATTGATATGTTTTCATATTAATGATNAGCACTGATCACTCATTCAGACAATAAGATTAAACAAA-C--------CATATNATTATTTGTTGTTATAACTTTATCCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTNACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACATNAACATAACCCAATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--TGT------------------TTTT-----TTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAGGT-------------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|1 : TATTTGTGTCGTAATTCTTATTTCCTTTTCCACTTGTTTCACGCCTTTGCAATTTAAATTACTTTATATATTATAAAGATGTATATCTTATTTGGTTTGAGAACAAAATGAGATATGTGCATTTTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTAAATAATTTTATTTA--TTGATATTTATTGATATGTTTTCATTTTAATTAAAAGCACTGATCATTCGTTCAGACAATAAGATTAAACAAA-C---------ATATTATTATTTGTTGTTATAATTTTATCTATTAATACTATCCTTATTATCTGATATGTATATGT---ACTGTTGATATATTTATTAGTTTTATTATAAAAAATAAATAAACACAGTCAAGTA---TATAACATTTACC--------TTTATTTATTTATTAAATAATCTTATTACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTTTTAA--A--TGAACTTTTGCATTACGGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTAAATTATACCTATCAGAATAAAAATATACATAATCATTACCCAATAACTTCTAGATTTATATCA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTACATAAA--TTTGATAAACA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACTGAAA---GACAAGTTGACACAAATATTGTGTAAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--CGT------------------TTTT-----TTTG--C-AAAATCAATTTCAA-ATTCATATCTGATATATAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAAAAGCTAAATCTAGCTTC-----------TTTCGGTGTCTTTCGGTTATCAGGTGTCTTTCG-GTTTTTCCAGTCACC
gi|10 : agtagtgtaactcatacgtacagatatgttaatgcgtgggtgtatcggaagcacggggtgaaaattcaaaacggggtgaacaattatttgactttcggttattaataaaataccataacatcatttgacaatttaaatttttattaatacgacatgaatactgatatattgacatcattatacatatttacaatgagcgatcaaagcgtgtaacaatgtcttcattgacactgtgattatccatcaagtttagatgtgtttcatactgaaactatttaacgctattcccattcattttcttcttcagactcttcttcttcagatactgcttcgtattttataATAAACA-TAAATGTATTTCGGTTATGATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--TCGTACATTTTT-A-AA--TGT------------------TTTTTTTTATTTG--C-AAAAACAATTTTAA-ATTCATATCTGATATACAAAAT---------AATAGAAACATGATCAGTTATGCCTTAAATAGCTAAATCTAGGTGTC----------TTTCGGTGTCTTTCTGTTATCAAGTGTCTTTCGTTTTTTTCCAGTCCCC
gi|11 : GGTAAAA-GTTATCACAGTCAAACTTTGT-CATCTTTAAGAA--T-----------------------------------C-AAAAACAATTTTAA-ATTCATATCTGATACATAATAT---------AATAGAAACTTGATCATTAATGCCTTAAATAGCTAAATCTAGGTGTCTTTTGGTGTATTTTGGTGTCTTTCGGTAATCAGGTGTCTTTAG-GTTTTTCCAGTCAC
gi|12 : TAAAA-A----CATA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------TTTT-----TT-G--T-AAAAACAATTTCAA-ATTCATATCTGATATATAAAATAAATTAAATAATAGAAACATGATCATTTATGCCTTAAATAGCAAAATCTAGGTC------------TTTCGGTATCTTTCGG
gi|14 : ATTAATGAT-AGCACCGATCACTCATTCAAACAATAAGATAAAACAAA-CAACAACATCATCTTATTCTTT-TTGTTATAatttccagtcac
gi|2 : TAATTGT-TTG-AGTTCCTATCTCCTTTTCCACTTGTTTTATGCACTTGCAATTTAAACTACTTCATATATTACAATGATGTACATCATATTTGGTTGGAGAAAAAAATGAGATATGTGC-TTCTTGATCATTTATTTCATACATACTTAAACAAAATAATTGTACTAATCATATAAGTGAATAATTTCATTTA--TTGACATTTATTGATATTTTTTCATATTAATGATAAGCATTGATCACTCATTCAGACAATTAGATTAAACAAA----------CATATAATTATGTGTTGTTATA---------------ACTATCCTTACTATGTGATATGTATATAT---ACTGTTGCTATATTTATTAGTTTTGTTATAAATAATAAATAGACACAGTCAAGAA---TATTACAGTCACTTTTATTTATTTATTTATTTATTAAATAATCTTATTACCGGATATATTTATATTA-TATTGTTGCTATATTTATTTATTAA--A--TGAACCTGTGTATTACAGTAGAAAAGACAACTCTGGGAATACCGAAATACACTTGAATTATACCTATCAGAATAAAAATATACAATAACATAACTCAATAACTTCTGGATTTATATTA--ACAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTTTTTAAAAGTTTTATAAAAA-TAA-TGTATTTCGGTTATAATTGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACATTGACACACTTATTGGGT-AAA-A----TGCA-TCAAA--TATTACATTTTTAA-AA--TGTATTTTTTTTTGTTTTTTGTTTT-----TTTG--T-AAAAACAATTTTAA-ATTCATATATGATATATAAAAT---------AATAGAAACATGATCATGTATGCCTTAAATAGCTAAA--------------------TTTCGGTGTCTTTTGTTT
gi|3 : ttATAATTATACTTATCATCTGAGTGAATAATTTT--CTAATTTGAAA---ATT---ATGTTTTTATATTAATGATTAGCAATGATCACTCATTCAGACAATAAGATAAAAAAAAACAA------CATATAATTATTTTTTGTTATAACTTTATTCATTAATACTATCCTTATTATCTGATATGTATATAT----------------TTGTTAGTTTTGTTATAAATAATAAA--AA---AGTTAAAAAAAATACAA--TTCACC--------TTTATTTATTCA----ATAATCTTATTACCGGATATA--TT---TAATATTGTCGCTTTATTTATCGATTAATTAGTTGAACATGTGCATTACGGTAGAACAGACAACTCTGGGAATAC-GAAAAACACTTGAATTGTACCTATCAGAACAAAAATACACATTAACATAACCCAATAACTTGTAGATTTATATTA--ATAATACATTTGATCAACCATTATTGATGTTTAAATAAAGTTATTAATGTAAA--TTTGATAAAAA-TAAGTGTATTTCGGTTATAATCAAAATC-AAGGGAAGAAACTCGTAATAACCGAAA---GACACACTGGCACAAAAATTGGGTAAAA-A----C-CA-TCAAA--TCGTACATATTTAA-AA--TGT------------------TTTT-----TTTTTTC-AAAAACTATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATAATTTATGCCTTAAATAGCTAAATTTAGGT--------------------GTCTTTCGGT--------GTCTTTCG-GTTTTTCCAGTCACtttccag
gi|4 : ATCCTTATTATCTGATATGTAT-CATTCCACTGTTGCTATATTTATTAGTTTGGTAATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTATTTATTTATTAAATAATCTTATTACCGCATGTA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAAAACCGAAATACACATGAATAATACCTATTAGAATAAAAATATGCATAAACATAAACCAATAACTTCTAGATTTATATTA--ATAATACATTTGATCAACCATTACTGATGTTTAAACAAAGAAACTTACGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTTATAATCGAAATC-AAGGAAAGTAACTCGTAATAACTGAAAAAAGACATATTGACACAAATATTGGGTAAAC-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AGT------------------GTTT-----TT-G--C-AAAAACAATTTCAA-ATTCATATTTGATATTTAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAAGT--------------------GTCTTTCGGT--------ATCTTTCG-GCTTTTTCGGTCAC
gi|5 : TACTTAAATAAAATAATTGTACTTATCATATAAGTGAATAATTTTAT-------G-----TATTGATATGTTTTCATATTAATGATTAACACTGACCACTCATTCAGACAATAAGATTAAACAAA-C---------ATATTATTATTTGTTGTTAT--------CCATTAATACTATCCTTATTATCTGATATGTATATAT---ACTGTTGCTATATTTATTAGATTTGTTATAAAAAATAAATAAACACAGTCAAGAA---TATAACATTAACC--------TTTAATTATTAATTAAATAATCTTATAACCGGATATA--TA---TA-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGGTAGAAAAGACAACTCTGGGAATACTGAAATACACTTGAATTATACCTATCAGAATAAAAACATACATAAATATAGCCCAATAACTTCTAGATTTATATTA--ATAAAACATTTGGTCAACCATTACTGATGTTTAAACAAAGAAACTTATGTGAA--TTAGATAAAAA-TAAGTGTATTTCGGTAATAATTGAAATA-AAGGGAAGTAACTCGTTATAACTGAAA---GACACATTGACACAAATATTGAGT
gi|6 : AAAGACACCT----GATCACCGAAAGACACCTAGATT-TAGCTAT-----TTAAGGCATAAATGATCATGTTTCTATTATTT-TA----TACATCAGAATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGCAACTTACGTAAA--TTTGATAAACA-TAAGTCTCTTTCGGTTATAATCGAAATC-AAGGGAAGTAACTCGTAATAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CGCA-TCAAA--GCGTACATTTTTAA-AAGTTTT------------------TTTT-----TTTG--CAAAAAACAATTTCAT-ATTCACATCGGATATATAAAAT---------AATAGAAACATGATCATTTATGCCTTAAATAGCTAAATCTAGGTGTA----------TTTCGAT-TTTTCCAGTCA
gi|7 : gTTTATTAAATAATCTTAT--CTGGATATA---A----A-CATTGTTGCTATATTTATTTATTAA--A--TGAACTTGTGCATTACGTTAGAAAAGACAACTCCGGGAATACTGAA--------------TACCTATCAGAATA------TACATTAACATCACAAAATAACTTTTAGTTTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAAAAATTTACGTAAA--TTTGATAAACA-TAAGTGTATCTCGGTTATATTCGAAAACGAAGGGAAATAACTCGTAAAAACCGAAA---GACACACTGACACAAATATTGGGTAAAA-A----CACG-TCAAA--TCGTACATTTTTAA-AA---GT------------------TTTT-----TTTGTCC-AAAAACAATTTTAA-A-TCATATCTGATATAAAAAAT---------AATAAAAACATGATCATTTATGCCTTAAATAGCTAAATCTA--------------------GGTGTCTTTCAGTTATCAAGTGTCTTTTG-GTTTTT-CAGTCACcgggttttccagtcaccgaacataaatgactttcccaaatgaaatagtagtaaaaatacataaaacactgtgtatatgtaaaataaaaatcagagacttgtaaattacaaaatcaa
gi|8 : CCTATCAGAACACAAATATACATAAACATAACCCAATTATTTCTAGATTTATTTTG--ATAATACCCTTATTTAATCACT-TTGATGTTTAAACAAAGAAACAGGTGTAAT--TTTGGTAAAAAGTATTTGTATTTTGATTATAATCATAATT-AAGGGAAGTAAATTTTAAAAAACAAAG---TACACATTGCCACAGATATTAGGTAAAATA----AGCT-TCAAG--TTATACATTTT-GA-TA--TGTGA----------------TTTT-----TTT---C-AAAAACA--TTTAAGATGCATATCCGATACATTAAAT---------AAATGAAACTTGATTATTTAAGCGTTAAATAACTATGGTTGGGT-------------ATTCTGCATCTTTTGGTTATCAGTTGTCTTTCA-GTTTTTCCAGTCAC
gi|9 : AATAACTTCTAGATTTATATTA--ATAATACATTTGGTCAACCATTACTGATGTTTAAACAAAGTTATTAACATAAA--TTTGATAAAAA-TAAGTGTATTTTGGTTTTTATTGAAATC-AAGGGAAGTAACTCATAATAACCAAAA---GACACATTGACACAAA-ATTTGG-AAAA-A----CGCA-TCAAA--TCGTACATTTTTAA-AA--AAT------------------TTTT-----TTTA----AAAAACAATTTTAA-ATTCATATCTGATACATAATGT---------AATAGAAACTTGATCAATAATGCCTTAAATAGCTAA-TCTAGGT--------------------GTCTTTCGGTTATCAGGCGTCTTTCG-GTTTTTCCAGTCACC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGAAACTTAAACATTGACTTAAATAGCTATTTATGAGTGTATTAGCTATTTATGAGTGTATTTTGATGTTTTTCGGTTATTGCACGTCTCGTTTTTTCCCAATCA
Unaligned ( gi|15 ): TCAAAAAGAGCTTTAATAAGAAGGAGGCTTAAATGAAAAGCACCATGTATGATATTGAAATAAAGAT
Unaligned ( gi|16 ): AAAATAGAGGATGTGATTGCTAAAATAAGCTAGTAAACATGCACA