lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444 11111 1111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 1 1 444 2 222222222 22222222222 4444444444444444 1 111 3333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 3333333333 333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 99999999999999999999999999999999999999999999 77777 4 3 66 6666666 4 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 5 6 6 5 5 6 7 555 6 0 2 7 3 999999999 0 3 6 0 66666666666 5 2222222222222222 5 6 1 5 666 4 5555555 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8888 2 2 6 8888888888 4 0 111111111111111111111111111111111111111111111111111111111111111111 6
lowQualScore : . ............................................ ..... . . .. ....... . . .................................................................................................................................................................................................................................................................................. . . . . . . . . ... . . . . . ......... . . . . ........... . ................ . . . . ... . ....... . ......................................................................................................................................................................................................................................................................................................................................................................................................................... .... . . . .......... . . .................................................................. .
lowQualScore : 4 33333333333333333333333333333333333333333333 55555 0 6 99 2222222 1 4 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 0 0 0 0 0 0 000 0 0 5 3 0 888888888 8 2 7 3 44444444444 7 3333333333333333 7 9 4 7 777 2 8888888 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0000 5 5 0 5555555555 0 7 000000000000000000000000000000000000000000000000000000000000000000 0
consensus : NNGAAATGTGCCCGTCGA--TA--NAAAATGCCCCCA--CTG---T-GCCCGTAG-CTT---TATT-----GTAGCA--AT-------GCCATTTGACTG-TANGAGT--GTTTCAAC-TAGTGACAGT--ACT--TAGTAC---AGAGACGACA--ATNTG--C----GGACAT--AAC-T---T--CATACTGATACTCGC-A--GC-AGTAAGT-TTGANCATAATCGG--------TTNAGA-----A----AG----------A------C------TGAC---AAGAA---TTACAATT---AATAATAATCTAACTCGATGGGGCGGA---CCTCCAGAAGTCAATAAGGCAGAAC--ATTATGATGGTAATAGCAANNNNNNNNNNNNNNNNNNNNATGTGAAACACGAAGGAACATAGAACCTTAATGCTTTTAGG-GTTGGATATGNAAAGTTTGACCAAAAT--------CAGTTGAGAAGT-TTAGGAG---NA-GT---GCTGG-CAAG--A------------T-TTACCATTA-A-AA-TAATCAAA-------GGGCCGTAACTC-GCNANAAGTCGATG-GACCGT-TGC-ACGGTGA--ACATGC-A-AACTGGATTTTATACT---GATA--TGCC-AT-G---CAANT-TTGGC----CAAAAT------CGNTTGAAAAGT-T---CAGGAG--N-AGA-GCTG-ACAAGA-----TT------T----AC--CATTTA--A-ATA-AAAAATAA--TNAAAGGG-----A--CCATAACTGCGCCAA-AAGT----CANT--AT-GCAATNGNNACTATG--CGGAGCNAGACTTCATATNCCCTAATANGCTTCGCCNAAATCAGTTGAGAAGTTTANNAGNAGTTCGCTNGCAAGATTAAAAAGTTTAAAACAAATA----ATTTGATAT-GAA-ATAATCTAAGGGCCTGAAG-----------TCAATAAGGCAGAACATNACGATGGTGCACATAGCT-GAANTCATATTTA-ACTCAC----TA---A--T-TG-GNCAAAATCGGC-G-GA---TTTTAA----GAAG--AA---GCTGACAAGAAA
Reference ( gi|1 ) : TTGAAATGTGCCTGTCGA--CA--AAAAATGCTCCCA--TTG---T-GTCCATAG-CGA---TATT-----GCAGTA--AT-------GCTATTTGACTGAAAAGAAT--ATTTCAAC-TAGTGACAGT--ACT--TGGTAT---AGAGACAATA--ATATG--CA---GAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--------TTGAGA-----A----AG----------A------C------TGAC---AAGTA---TTATAATT---AACAATTATTTAA------GGAACATAACTCCTCCAAAAGTTAATAGAATAGAATGAATTTT--TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGCACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTTTGACTAAAAT--------CAGTTGAGAAGT-TTAGGAG---AA-GT---GCTGG-CAAG--A------------T-TTACAATTA-A-AA-TCATCAAA-------GGGCCATAACTCTGCAACAAATCAATG-GACTGT-TAC-ACAATAA--ACATGC-A-AGCTGGATTTTATACT---AATA--TGCC-ATTG---CAATT-TTGGC----CAAAAT------CATTTGAAAAGT-T---CAGGAG--G-ACA-GCTA-ACAAGA-----TT------T----AC--CATTTA--ATATAAAAAAATAA--TAAAAGGGCC-AAATTCCATAACTCTGCCAA-AGGT----CAAC--AT-GCAATTGTTA-TATGTACAGCACAAGACTTC--ATTCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAG-----AAAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCAC----TA---A--T-TT-GCCAAAATCGGTTGACATGTTTTTGA----GAAGTAAA---GCTGACGAGAAAATGTAATGCATATATTGAGAAATATAGGGCCAAAATTACTCCACGAACCAATGGCTTGGAACATAACAGCGATAA
gi|11 : GAAATGTGCCTGTCTA--TG--TGAA-TACCCCCA--CTG---T-GTCCATAG-T-ATTTTATT-----GTAGAA--AT-------GCTGTTTAACGG----------GTTTCAAC-TTGCGGCGGTGCACT--T
gi|12 : aactaGAAATGTGCCCGTCAACTCA--AAAAACGTTGTC---------T-GCTTGTAG-CTT---TATTATGTAGTAGCA--AT-------AACATTTAACAGAtat
gi|4 : aactaAAATGTGTCTGTCAA--TA--GAAA----TACC---TTGGCTT-ACTTGTAG-CTT---TATT-----GTAGCA--AT-------GCCATTAGAAT--AATTAGT--ATT--AAC-TAGTGATAGT--A------GTATTACAGAGATGACAACATATG--TT---GGAC----AAC-TGAATGATATACTAATACTTGCTA-------TAACTGTTGGCTATAATCA---------TTTAGA-----AGTTTAGGGGTGTACATG------C------TGACCAGAAATA---TTGCAATT---AATAttgatt
gi|9 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatAAATGTGCCCATCGA--TACTAATAA-----CCAAACTG---T-GTTTTAAA-CTT---TATT-----GTAGCA--ATTAGCAATGCCATTT---TGATAAATGC--ATTTCAAT-CAGTGACAGT--GC
gi|5 : agctaactaaGTGCCTGGTGA--CA--TGAA-TGCCTGCA--CTT---T-GCCTGTAG-CCT---TATTA----GCAATATAAT--------CCATTTCACT------AATTGGTTTCCAT-AAGTGAC--T--A----TGGTGC---A----CAAC------TG-------GAAG------------T--CATACTGATACTCAC-A-----AGTCAGT-TTAAACATAATTGG--------CAGAGA-----A----actactaca
gi|10 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggAAATAATCCCA--TTG---TAGCACA-AGTCTA----ATT-----GTAGCA--AT-------GCCACTTGACTATTGAG-------TTTAACATAGTGACAGC--Atttaaggaggaagaaaaagtgctgacaaaaaattacgaataaatat
gi|2 : gacacAATGTCCCCG--CCG---T-GCATGTAG-CCT---TATT-----GTAGCA--AT-------GTCATTTGAC--ATCTGAGT--GTT--AAC-TAGTGA-AGT--ACC---AGTAT---AGAACCGACA--ATTTGAACAACTGGACAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAGATGTAAACTTCAGA-----A----GG----------A------TTAGTGATGAC---AAGAA---TAACAATTAAAAATAATAATTTAACTCGATGGAGCGGA------CCAAAAGTTAgtactactaaactaaactttgcttgatacttgctgtc
gi|3 : accgtcgcgG---T-GTCTATAA-CTT---TATT-----GTAGTG--AT-------GCCATTTGACT--AACG-----ATTTCGAC-TAGTGACAGT--AGTTCTACTAC---AGAGATGTGA--ATGTG--T----GCACATTGAAC-A---T--CTTACTGATACT------TGCCAACATGT-TTCACCTAAATCAG--------TTGAGAAGTTTA----AG----------AGTAGCGC------TTGC---AAGAAAGTTTACAAAT---AGAAATAATCTAA------GGG--------CCT---GAAGTCAATAAGGCAGAAC--ATTATGATGGTAATAGCAAtgaagttaaggagaagtagagctggcaatgtatgattaaactaatcaaaactagatggaccggaacaaaaacagatcgaccggaacgcttggacttatatttaaaatccctatcaatatggccaaaatcgattgcaaagtttaggagaagagctaacaagacttaccattcaaacaatgaagggatcataactgcaccaaaagtcgatggatcgcaatgacactatgcggaactagacttcatactaata
gi|15 : ATGTGAAACACGAAGGAACATAGAACCTTAATGCTTTTAGG-GTTGGATATGCAAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|2 : -ATGGAGCG---GACCAAAA-----------GTTATGAAGT-TAAGGAG---AA-GTAGAGCTGG-CAA----------------T-GTATGATTA-A-AC-TAATCAAAACTAGATGGACCGGAACA--AAAACAGATC-----GACCG-----------GA--AC--GC-----TTGGACTT-ATATTT--AAAA--TCCCTAT-----CAATA-T-GGC----CAAAAT------CGATTGCAAAGT-T---TAGGAG--A-AGA-GCTA-ACAAGA-----CT------T----AC--CATTC-----------AAACAA--TGAAGGG------AT--CATAACTGCACCAA-AAGT----CGATGGATCGCAA-TGACACTATG--CGGAACTAGACTTC--ATACT
gi|8 : accgtcgcgaatgtccccgccgtgcatgtagccttattgtagcaatgtcatttgacatctgagtgttaactagtgaagtaccagtatagaaccgacaatttgaacaactggacattgtattcatacttgctcgcacgtttgaacataatcagatgtaaacttcagaaggattagtgatgacaagaataacaattaaaaataataatttaactcgAAATTTGACCAAACTGGTGGACACAG--GACAAGTATCTGGAG---TA-G----GCCAGACAAG--A------------T-CTACCATTA-AAAA-TAACTTAA-------AAGCCATAACTGTGCCAAAAGTTAGTG-aata
gi|3 : gaccaaaatatgacaaaagacttgcacaacaagactttaaactgatagtctgagacGTTTCACCTAAAT--------CAGTTGAGAAGT-TTAAGAG---TA-GC---GCTTG-CAAG--AAAG---------T-TTACAAATAGA-AA-TAATCTAA-------GGGCCTGAAGT---CAATAAGGCA--G-AAC-AT-TATGATGGT-A--ATA-GC-A-ATTCATATTTC---CT---AATA--AGC---------------TTGGT----CAAAAT------CATTTTAAGAGT-T---CA-------------CTG-ACAAGA-----TTAAAAAATTAAAAC--AATTTG--ATATACAAccgccatatggtgatgatatg
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatTTGGCTATAAT--------CATTT-AGAAGT-TTAGGGGTGTAC-AT---GCTGA-CCAGAAA------------TATTGCAATTA-A-ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|14 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactataaatgtgtctgtcaatagaaataccttggcttacttgtagctttattgtagcaatgccattagaataattagtattaactagtgatagtagtattacagagatgacaacatatgttggacaactgaatgatatactaatacttgctataactgCCAAAAT--------CGGTTGAGAA-----AGGAG---TA-GT---GTGGG-CAAG--A------------T-TTACCATTAGA-AA-TAACCAAA-------ta
gi|6 : AGT-TTATGAA---AATGTA--GCTGA-CAAG--AAAGTGAGACATGT-TTACCATAA-A-AA--CA-CAAATGAA---GGGCCGTAACTCCGCAAACATTCGACG-GAA-GTATGC-TCGGTGACGAAACGCTA-AACTAGATTTCATATT---GATA--GTCT-CTAG---CACAT-TAGGCAAAACAAAA-------CGGCTAAAAGGT-T----AGGAGTAGTAGA-GCTG-ACACGA-----a
gi|7 : actaatttcataaaatactcactagcaaaatgtatgaaaagtgtttgTAAGAG---TA-AT---GCTGA-AAAC--A------------C-TTAACATTA-A-AAATAATGAAA-------AGGCCATATCTCAACCAGAAGTTAATG-GACTA-----------GA--ACATG---------------ACATT---GATA--TGC-----G---CAA-C-TCGGC--------GT------CGTT---AAAGT-TAAACAGGAG--T-ACA-GCTG-ACAAGAAAGTGTT------T----G----ACTTACCAGGT-AAGAGTTAA--T--AAGGG--------CCATAACT-TGCCAACAGATGGACCAGA--AT-GCA
gi|3 : gaaatgatgaataaaatgtgcaagtatggTAGTTCTACTACAGA--GATGTGAATGTGTGC-ACATTGA--ACAT-------CT--------TACT---GATACTTGCC-A--A---CATGT-TTCAC----CTAAAT------CAGTTGAGAAGT-T---TAAGAG--T-AGC-GCTT-GCAAGAAAG--TT------T----AC-------A--A-ATAGAAA--TAA--TCTAAGGGCCTGAAGTCAATAA----GGCAG-AA------CATT--AT-G--ATGGTAA-TA--------GCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAAT-TAAAACA--------ATTTGATAT
gi|8 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacag-ACAAAAG--ACTTGC-ACAACAAGACTTTAAACT---GATA---GTC---TGAGACAAAT-TTGAC----CAAACTGGTGGACACAGGACAAGTAT---CTGGAG--T-A-G-GCCAGACAAGA-----TC------T----AC--CATT----------AAAAATAACTTAAAAG----------CCATAACTGTGCCAA-AAGT----TAacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|16 : gaccaaaatatg-ACCATAA--ACATGC-A-AACTGGAATTT-TACTGGCAACA--TACC-ATCT---CAATT-TTGGgtgccgccatatggtgatgatatg
gi|4 : -AACTGAATGATATACT---AATACTTGCT-AT------AACTGTTGGC----TATAAT------CATTT-AGAAGT-T---TAGGGGT-GTACATGCTG-ACCAGA-----AA------T----ATTGCAATTA--ATA
gi|3 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactataaatgtgtctgtcaatagaaataccttggcttacttgtagctttattgtagcaatgccattagaataattagtattaactagtgatagtagtattacagagatgacaacatatgttggacTGTTTCACCTAAATCAGTTGAGAAGTTTAAGAGTAG--CGCTTGCAAG-----AAAGTTTA---CAAATA--------------GAA-ATAATCTAAGGGCCTGAAG-----------TCAATAAGGCAGAACATTATGATGGTA---ATAGC---AATTCATATTT---CCTAA----TA---AGCT-TG-GTCAAAATCA----------TTTTAA----GAGTTCA-----CTGACAAGA
gi|5 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacaTGACTATGGTGCACA--ACTGGAAGTCATACTGATACTCACAAGTCA---G--T-TTAAACATAATTGGCAGAGA---ATTTAAGGAGGAAGAAAAAGTGCTGACAAAAAAttaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|2 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaagggtgcctggtgacatgaatgcctgcactttgcctgtagccttattagcaatataatccatttcactaattggtttccataagCTTGGACTTATATTTAAAATCCC----TATCAA--TATG-GCCAAAATCGATTGCAAAGTTTAGGA----GAAG---A---GCTAACAAGAttacgaataaatat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222222222222 555555555555555 222222 11 666666666666666666666666666 666666666666 3333333333333333333333333333333333333333333333333333 1111111 111 888888888888888888888 333333 1 4444444444444 22222222222222222222 1 222 111 111111 8888888888 444444444444 1 111 1 333 444444444444 11 1111 33333333 1111 22222222 1111 111 6666666666666666666666666 1111 55555555 22 1 33333333 77777777777777777 11 22222 111 22 6666666666666666666666666666666666666666 99999999999 2222 333 333 22 88888888888 33333
lowQualScore : 0 99 11 5 0 0 0 1 4 11 66 1111111111111 9999 1 999999999999999 3 5 66 111111 2 22 1 11 11 111111111111111111111111111 8 000000000000 8 1 7777777777777777777777777777777777777777777777777777 8 9999999 8 444 0 999999999999999999999 0 0 222222 2 1111111111111 7 7 00000000000000000000 0 2 333 444 444444 7 1 7777777777 1 2 1 8 8 111111111111 6 444 0 2 000 1 1 0 8 888888888888 33 5 7777 6666 22 888 888 55555555 1 4444 1 3 11111111 8 7777 444 1 3333333333333333333333333 5555 99999999 2 33 1 3 3 33333333 99999999999999999 88 1 111 0 6 1 00000 3 444 1 33 0 11 5555555555555555555555555555555555555555 4 4 55555555555 2 4 1 6 6666 888 1 888 2 77 2 1 66666666666 77777
lowQualScore : . .. .. . . . . . . .. .. ............. .... . ............... . . .. ...... . .. . .. .. ........................... . ............ . . .................................................... . ....... . ... . ..................... . . ...... . ............. . . .................... . . ... ... ...... . . .......... . . . . . ............ . ... . . ... . . . . ............ .. . .... .... .. ... ... ........ . .... . . ........ . .... ... . ......................... .... ........ . .. . . . ........ ................. .. . ... . . . ..... . ... . .. . .. ........................................ . . ........... . . . . .... ... . ... . .. . . ........... .....
lowQualScore : 7 22 33 5 2 2 9 1 4 66 11 1111111111111 4444 9 666666666666666 2 0 99 666666 5 00 0 00 88 444444444444444444444444444 2 222222222222 0 0 0000000000000000000000000000000000000000000000000000 0 0000000 0 000 7 000000000000000000000 7 7 777777 0 3333333333333 3 3 00000000000000000000 7 0 333 000 000000 3 0 5555555555 0 5 0 0 0 000000000000 0 000 0 0 000 0 0 2 0 222222222222 66 7 1111 5555 88 888 333 00000000 0 2222 0 2 22222222 0 2222 000 0 0000000000000000000000000 2222 00000000 5 22 0 3 0 55555555 55555555555555555 55 0 777 7 7 0 33333 7 000 0 00 7 77 0000000000000000000000000000000000000000 0 0 00000000000 5 0 0 0 5555 000 0 555 5 55 5 0 55555555555 00000
consensus : NNGAAATGTGCCCGTCGA--CANAAAATGCCCCCGCTGT-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACTA--ATGAGT--G--TTTCAAC-TAGTGACAGT--AC-TT--ANTACAGAGACGACA--ATNTG------T-GGACAT--AAC-T---T--CATACTGATACTCGC----A-CAGTAAGT-TTGANCATAATCGG--G--AA-TTNAGAAGTTT-AG----------A--A-------C------TGAC-AAGA---A---TTAC-AATT---AATAATAATTTAA------GGAGCGGA---CCTCCAAAAGTTA--A---TAAGGCAGAAC--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT-GCTGACAAGA------------TTTACCATTA-AAATA---ATNAAAGGGCCATAACT-C-GCNAAAAGTCGATG-GACTGT-TGCACAATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCA-T-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAG--TTTACCATTT---AA-AT-AAGAAATAA-TNAAAGGG-------CCATAACTGTGCCAAAAGTCAAT-ANGCAATNGNCATTATGNACGGTAATCGCAAGACTTCATATTCCCTAACATGTTTGGCCAAAATCAGT-GGGAAGTTTA-NAGGAG--CGCTGACAAGA----AAAATTTAA-GCA-ATA----ATTTGATATNAAATATAATCNAAGGGCCNGAAGAACGCCAAACATCAATAAGNCNGAACATNATGATGGTACACATAGCTAGAATTCATACTTATACCCANTAAGCTTNGCCAAAATCGGTTGACATGTTTTTGAGAGNTANCGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGA--TANAAAATGCCCCCACTGT-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACTG-TANGAGT--G--TTTCAAC-TAGTGACAGT--AC-TT--AGTACAGAGACGACA--ATNTG------C-GGACAT--AAC-T---T--CATACTGATACTCGC----AGCAGTAAGT-TTGANCATAATCGG--------TTNAGAA-----AG----------A----------C------TGAC-AAGA---A---TTAC-AATT---AATAATAATCTAACTCGATGGGGCGGA---CCTCCAGAAGTCA--A---TAAGGCAGAAC--ATTATGA--TGGTAATAGCAANNNNNNNNNNNNNNNNNNNNATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGNAAAGTT----------TGACCAAAATCAGTTGAGAAGTTTAGGAGNA-GT-GCTGGCAAGA------------TTTACCATTA-AAATA---ATCAAAGGGCCGTAACT-C-GCNANAAGTCGATG-GACCGT-TGCACGGTGA--AC-ATGC-A-AACTGGATTTTATACTG---ATA--TGCCA-T-G---CAANTTTGGC----CAAAATCGNTTGA------A-AAGT-T---CAGG---AGNAGAGCTGACAAGA-----TTTACCATTT---AA-AT-AAAAAATAA-TNAAAGGG--A----CCATAACTGCGCCAAAAGTCANT-ATGCAATNGNNACTATG--CGG----AGCNAGACTTCATATNCCCTAATANGCTTCGCCNAAATCAGTTGAGAAGTTTANNAGNAGTTCGCTNGCAAGATTAAAAAGTTTAAAACAAATA----ATTTGATATGAA--ATAATCTAAGGGCCTGAAG-----------TCAATAAGGCAGAACATNACGATGGTGCACATAGCT-GAANTCATATTTA-ACTCACTAA--TTGGNCAAAATCGGCGGA-----TTTTAAGAAG--AAGCTGACAAGAAA
gi|1 : GAAATGTGCCTGTCGA--CAAAAAATGCTCCCATTGT-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAAGAAT--A--TTTCAAC-TAGTGACAGT--AC-TT--GGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--------TTGAGAA-----AG----------A----------C------TGAC-AAGT---A---TTAT-AATT---AACAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA--A---TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT----------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT-GCTGGCAAGA------------TTTACAATTA-AAATC---ATCAAAGGGCCATAACT-CTGCAACAAATCAATG-GACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATT-G---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA-----TTTACCATTT---AATATAAAAAAATAA-TAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTA-TATGTACAG----CACAAGACTTC--ATTCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAG-----AAAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAA--TTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|10 : ttAAATAATCCCATTGTAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACTA-T-TGAG-------TTTAACATAGTGACAGC--Aatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|11 : gacacGAAATGTGCCTGTCTA--TGTGAA-TACCCCCACTGT-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC--------GG--G--TTTCAAC-TTGCGGCGGTGCAC-TT--gtactactaaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAACGTTGTC----T-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACtat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT-GTGGGCAAGA------------TTTACCATTAGAAATA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : TAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCA-TCT---CAATTTTGG
gi|2 : accaAATGTCCCCGCCGT-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGAC-A-TCTGAGT--G--TT--AAC-TAGTGA-AGT--AC--C--AGTATAGAACCGACA--ATTTGAACAACT-GGACAT--TGTAT---T--CATACT--TGCTCGC----A-C-----GT-TTGAACATAATCAGATGTAAACTTCAGAA-----GG----------A----------TTAGTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCGGA------CCAAAAGTTATGAAGTTAAGG-AGA----AGTA-GAGCTGGCAAT-GT-ATGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAATATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA-GCTAACAAGA------------CTTACCATTC-AAACA---ATGAAGGGATCATAACTGC-ACCAAAAGTCGATG-GATCG------CAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : accgtcgcgGT-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACTA--ACGA-------TTTCGAC-TAGTGACAGT--AG-TTCTACTACAGAGATGTGA--ATGTG------T-GCACATTGAAC-A---T--CTTACTGATACTTGC------CAACATGT-TTCACCTAAATCAG--------TTGAGAAGTTTAAG----------AGTAGCG----C------TTGC-AAGA---AAGTTTAC-AAAT---AGAAATAATCTAA-----------GGG---CCT---GAAGTCA--A---TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : GATGTGAATGTGTGCACATTGA--AC-AT-------CT--------TACTG---ATACTTGCCA---A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAG--TTTAC--------AA-AT--AGAAATAA-TCTAAGGG-------C-----CTG------AAGTCAATAAGGCA--GAACATTATGA-TGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATCA---------TTT--TAAGAGTTCACTGACAAGATTAAAAAA-TTAAAAC----A----ATTTGATATttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagaCCAACATGTTTCACCTAAATCAGTTGAGAAGTTTAAGAGTAG--CGCTTGCAAGA-----AAGTTTA---CAAATA-------------GAA--ATAATCTAAGGGCCTGAAG-----------TCAATAAGGCAGAACATTATGATGGTA---ATAGC---AATTCATATTT---CCTAATAAGCTTGGTCAAAATC-----A-----TTTTAAGAGT--TCACTGACAAGAacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttg-AACTGAACTTCATACTG---AAA--TTCCA-TAG---CAATTTTGGT----CATAATCAATTAA------ttaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAA--TAGAAA-TACCTTGGCT-T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAATA--ATTAGT--A--TT--AAC-TAGTGATAGT--A--GT--ATTACAGAGATGACAACATATGT-----T-GGAC----AAC-TGAATGATATACTAATACTTGC------TA-TAACTGTTGGCTATAATC-A--------TTTAGAAGTTT-AGGGGTGTACATG----------C------TGAC-CAGAAATA---TTGC-AATT---AATAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGA--CATGAA-TGCCTGCACTTT-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT------AATTGG--TTTCCAT-AAGTGAC--T--A---T--GGTGCA-------CA--ACT----------GGA-----AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCAGAGAATTTAAGGA-----GG----------AAGAAAAAGTGC------TGACAAAAA---A---TTACGAATA---AATA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggAGTTTATGAAAATGTAGCTGACAAGAAAGTGAGACATGTTTACCATAA-AAACACAAAT-GAAGGGCCGTAACTCC-GCAAACATTCGACG-GA-AGTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTC-TAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGA-----t
gi|7 : actaatttcataaaatactcactagcaaaatgtatgaaaagtgtttgTAAGAGTA-AT-GCTGAAAACA------------CTTAACATTAAAAATA---ATGAAAAGGCCATATCT-CAACCAGAAGTTAATG-GACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC-----G---CAAC-TCGGC--------GTCGTT---------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTG--ACTTACCAG-GT-AAGAGTTAA-T--AAGGG-------CCATAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC--T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA-----TCTACCATT-----------AAAAATAACTTAAAAG--------CCATAACTGTGCCAAAAGTTAGT-atggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGA--TACTAA-TAACCAAACTGT-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---TG--ATAAAT--GCATTTCAAT-CAGTGACAGT--GCACT--ACTACAgccgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 2 2222222222222 22222222222222 222222 111 555555555555555555555555555 444444444444 22222222222222222222222222222222222222222222222222 1111111 111 6666666666666666666666 333333 1 555555555555 111111111 11 222 333 1 444444444444 1 444444444444 111111 1 222 3333333 11 11111 3333333 1111 22222222 1111 111 55555555555555555555555555 1 22 3333333 11 1 111 1 2 22222 222 11 99999999999999999999999 333 222 777777777 55 11
lowQualScore : 66 66 1 22 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 66 444444 1 0 111 3 000000000000000000000000000 8 888888888888 8 1 44444444444444444444444444444444444444444444444444 8 9999999 8 444 6666666666666666666666 222222 2 000000000000 7 555555555 333 333 22 333 0 333 3 1 77 7 1 333333333333 2 0 0 999 1 8 8 111111111111 8 444444 1 3 0 888 1 0 0 8 7777777 66 11 5 55555 5 3 22 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 99999999999999999999999999 0 00 2 2222222 22 3 1 999 1 5 0 77777 000 88 88 00000000000000000000000 6 555 222 888888888 44 77 6 6 1 77 1 1 6 6 6 1 55 1 77 66
lowQualScore : .. .. . .. . .. . .. .. ............. .... . .............. . . .. ...... . . ... . ........................... . ............ . . .................................................. . ....... . ... ...................... ...... . ............ . ......... ... ... .. ... . ... . . .. . . ............ . . . ... . . . ............ . ...... . . . ... . . . . ....... .. .. . ..... . . .. ... ... ....... . . .... . . ........ . .... ... .......................... . .. . ....... .. . . ... . . . ..... ... .. .. ....................... . ... ... ......... .. .. . . . .. . . . . . . .. . .. ..
lowQualScore : 99 99 6 55 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 99 666666 0 6 888 8 888888888888888888888888888 2 222222222222 0 0 88888888888888888888888888888888888888888888888888 0 0000000 0 000 3333333333333333333333 777777 0 333333333333 3 333333333 000 000 77 333 7 000 3 0 77 3 0 000000000000 0 2 2 000 4 0 0 000000000000 0 888888 0 8 0 000 0 8 2 0 4444444 99 99 0 99999 4 4 44 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 00000000000000000000000000 0 88 5 5555555 00 3 0 555 0 5 5 00000 555 55 00 55555555555555555555555 0 000 555 555555555 00 00 0 0 0 00 0 0 0 0 0 0 00 0 00 00
consensus : NNGAAATGTGCCCGTCGA--CACGAAATGCCCCCGCTG--T-GCCCGTAGC--TTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGT--AC-NT--ANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG---------AA-TTNA-----GAAGT-TTAGG---------G---G--CTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG-A---CCT--AAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTC-CTA-CAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT-GCTGACAAGA------------TTTACCATTA-AAA-TA---ATGAAAGGGCCATAACT-CCG-CNAAAAGTCGATG-GANTGT-TGCGCAAT--GA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGGAGTA---GAGCTGACAAGAAAGT-------TTACCATT-AA-ATAAGAAA-TAATNTAAGGGCCA-------TAACTGTGCCAAAAGTCAAT-ANGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCNGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAA--TTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGA--CANAAAATGCCCCCGCTG--T-GCCCGTAGC--TTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGT--AC-TT--ANTACAGAGACGACA--ATNTG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG----G----AA-TTNA-----GAAGT-TTAGA---------A------CTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCGGA---CCTCCAAAAGTTA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT-GCTGACAAGA------------TTTACCATTA-AAA-TA---ATNAAAGGGCCATAACT-C-G-CNAAAAGTCGATG-GACTGT-TGCACAAT--GA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGGAGTA---GAGCTGACAAGAAAGT-------TTACCATTTAA-ATAAGAAA-TAATNAAAGGGCCA-------TAACTGTGCCAAAAGTCAAT-ANGCAATNGNCATTATGNACGGTAATCGCAAGACTTCATATTCCCTAACATGTTTGGCCAAAATCAGTG-GGAAGTTTAN-AGGAG--CGCTGACAAG---AAAAATTTAA-GCA-----ATAATTTGATATNAAATATAATCNAAGGGCCNGAAGAACGCCAAACATCAATAAGNCNGAACATNATGATGGTACACATAGCTAGAATTCATACTTATACCCANTAAGCTTNGCCAAAATCGGTTGACATGTTTTTGAGAGNTANCGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGA--CAAAAAATGCTCCCATTG--T-GTCCATAGC--GATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGT--AC-TT--GGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG------------TTGA-----GAA-----AGA----------------CTGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT--------------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT-GCTGGCAAGA------------TTTACAATTA-AAA-TC---ATCAAAGGGCCATAACT-CTG-CAACAAATCAATG-GACTGT-TACACAAT--AA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGGAGGA---CAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAG---AAAA-TGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAA--TTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|10 : ttGA--CACAAA-TAATCCCATTG--TAGCACA-AGT--CTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGC--A--GT--ACTACatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTA--TGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTGCAC-TT--taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA------CGTTGTCT-GCTTGTAGC--TTTATTATGTAG-------TAGCAATA----ACATTTAACtat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT-GTGGGCAAGA------------TTTACCATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ACCAT--AA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : CCGTCG---CG---AATGTCCCCGCCG--T-GCATGTAGC--CTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGT--AC-C---AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG----ATGTAAACTTCA-----GAAGGATTAGT---------G------ATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCGGA---CC---AAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAA----TATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA-GCTAACAAGA------------CTTACCATTC-AAA-CA---ATGAAGGGATCATAACTGC-A-CCAAAAGTCGATG-GAT------CGCAAT--GAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAAC--TTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGT--AG-TTCTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG------------TTGA-----GAAGT-TTAAG---------AGTAGCGCTTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GGG--------CCT---GAAGTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : GATGTGAATGTGTGCACATT--GA--AC-AT-------CT--------TACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAGAGTA---GCGCTTGCAAGAAAGT-------TTAC-----AA-AT-AGAAA-TAATCTAAGGGC------------CTG------AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATCA---------TTT-T-AAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagaACAATTTGA---T-ATAC-A-A-CTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaAAATGTGTCTGTCAA--TAGAAA-TACCTTGGCT---T-ACTTGTAGC--TTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGT--A--GT--ATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC------------A-TTTA-----GAAGT-TTAGGGGTGTACATG------CTGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGA--CATGAA-TGCCTGCACTT--T-GCCTGTAGC--CTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--T--A---T--GGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCAGAG----AA-TTTAAGGAGGAAG----AAA---------AAGTG--CTGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTCACTAGCAAAATGTATG---AAAAGTGTTTGAG---TTTATGAAAATGTAGCTGACAAGAAAGTGAGACATGTTTACCATAA-AAA-CACAAATGAA-GGGCCGTAACT-CCG-CAAACATTCGACG-GAA-GTATGCTCGGT--GACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatacTAAGAGTA-AT-GCTGAAAACA------------CTTAACATTA-AAAATA---ATGAAAAGGCCATATCT-C-AACCAGAAGTTAATG-GACTA------------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGGAGTA---CAGCTGACAAGAAAGTGTTTGACTTACC----AG-GTAAGAGT-TAAT--AAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatggACAAA--AG--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGGAGTA---GGCCAGACAAGA---T-------CTACCATT-------AAAAA-TAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-atggaccagaatgca
gi|9 : gaccaaaatatgAAATGTGCCCATCGA--TACTAA-TAACCAAACTG--T-GTTTTAAAC--TTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGT--GCACT--ACTACAgccgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 000000000000000000000000000000000000000000000 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 333 1 66666666 111 444444444444 1111111 111111 111 444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 3333333 11 1 111 1 1 22222 222 11 444444444 11 2222 333333333
lowQualScore : 66 9 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 222222222222222222222222222222222222222222222 8 9999999 8 444 77777777777777777777 1 7 222222 2 777777777777 7 555555555 333 333 22 333 0 333 3 1 77 7 1 99999999 6 666 1 6 888 555555555555 7777777 6 777777 6 1 444 1 5 3 111111111 0 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 2 2222222 22 3 1 999 1 5 5 77777 000 88 22 222222222 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ............................................. . ....... . ... .................... . . ...... . ............ . ......... ... ... .. ... . ... . . .. . . ........ . ... . . ... ............ ....... . ...... . . ... . . . ......... . .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. . ....... .. . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 4 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 222222222222222222222222222222222222222222222 0 0000000 0 000 33333333333333333333 0 3 777777 0 777777777777 3 333333333 000 000 77 333 7 000 3 0 77 3 0 55555555 5 888 0 7 333 888888888888 5555555 7 555555 7 7 000 0 6 2 333333333 8 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 5 5555555 00 3 0 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAGC--TTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG------A-TTGAGAAGT-TTAGGG--G-A-A------G-----CTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAGA------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACTGTGCCAAAAGTCAAT-ANGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATGCCCCCGCTG--T-GCCCGTAGC--TTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-NTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGGA-----A-TTNAGAAGT-TTAGGG-------------G-----CTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--AC----CTAAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCC-TA-CAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAGA------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGANTGT-TGCGCAATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACTGTGCCAAAAGTCAAT-ANGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCNGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAGC--GATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--------TTGAGAAA-------G-------------A-----CTGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT----------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAGA------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA---------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGCTTGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AGT--CTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACgaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAGC--TTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAGA------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAGC--CTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAGATGTAAACTTCAGAAGGATTAGTG-------------A------TGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAATATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAGA------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAAC--TTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--------TTGAGAAGT-TTAAGA-------------GTAGCGCTTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GGG------C----CTGAA-GTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGC------------CTG------AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAGC--TTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC--------A-TTTAGAAGT-TTAGGGGTGTACAT-----G-----CTGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAGC--CTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGC-----A---GAGAA-T-TTAAGGAGGAAGAAAAAGTG-----CTGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAGAAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatactcactagcaaaatgTAAGAGTA-AT---GCTGAAAACA------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-atggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACT-AATAACCAAACTG--T-GTTTTAAAC--TTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAgccgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 222222 1 77777777777777777777777 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 333 1 444444444444 111 444444444444 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 44444444444 33333333333333 11 33333333 1 222222 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 9 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 999999 0 4 44444444444444444444444 0 8 9999999 8 444 11111111111111111111 88 222222 2 777777777777 7 555555555 333 333 22 333 0 333 3 1 77 7 1 333333333333 6 666 1 6 888 555555555555 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 44444444444 22222222222222 11 55555555 5 2 1 000000 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ...... . . ....................... . . ....... . ... .................... .. ...... . ............ . ......... ... ... .. ... . ... . . .. . . ............ . ... . . ... ............ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........... .............. .. ........ . . . ...... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 4 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 666666 0 0 00000000000000000000000 8 0 0000000 0 000 77777777777777777777 00 777777 0 777777777777 3 333333333 000 000 77 333 7 000 3 0 77 3 0 000000000000 5 888 0 7 333 888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 55555555555 00000000000000 55 88888888 0 5 0 555555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGG-GG-----AA--A-----GC---TGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTC-CTA-CAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAGA------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAATANGGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAAGTTTAGG-GG-----AA--------GC---TGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAGA------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACTGTGCCAAAAGTCAATANG-CAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAA---------------AG--------AC---TGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT--------------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAGA------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAACATG-CAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA---------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAGA------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG-AT-GTAAACTTCAGA-AG-----GATTAGT---GA---TGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAA----TATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAGA------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAG-AG-----TA--------GCGCTTG-C-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------G----G--GC----CTG-AAGTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAATA----GAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGG-GGTGTACAT--------GC---TGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAGG-----AAGAAAAAGTGC---TGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTCACTAGCAAAATGTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAGAAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatacTAAGAGTA-AT---GCTGAAAACA------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGTatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACT-AATAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAgccgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 222222 7777777777777777 11 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 1 111 1 66666666 111 3333333333333333 1111111 111111 111 44444444444 11 111 33333333 1111 22222222 1111 111 444444444444444444444444444 11 3333333 2 11 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 5 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 999999 11 4 4 6666666666666666 11 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 555555555 333 333 22 333 0 3 999 3 1 77 7 1 99999999 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 55555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 2222222 3 0 2 66 7 1 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ...... .. . . ................ .. . ....... . ... .................... . . ...... . ............ . ......... ... ... .. ... . . ... . . .. . . ........ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ........ . . .... . . ........ . .... ... ........................... . .. ....... . . . .. . . . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 5 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 666666 88 0 6 2222222222222222 00 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 333333333 000 000 77 333 7 3 777 3 0 77 3 0 55555555 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 00000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 5555555 2 0 5 00 3 0 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------T-GGACAT--AAC-T---T--CATACTGATACTCGC-A----CAGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAGT--AA--A--------GC--TGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGC--GGC----CCGAAAGTTA---A--TAAGGCAGAA--NATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGC-TTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCA-T-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAAT---AAGAAATAATNTAAGGG-------CCATAACT-TGCCAAAAGTCAATAC-GCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------T-GGACAT--AAC-T---T--CATACTGATACTCGC-A----CAGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGGG---AA--A--------GC--TGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGC--GGC----CCGAAAGTTA---A--TAAGGCAGAA--NATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGC-TTTT-GG-GNTGNATATGNAAAGTCC-TA-CAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCA-T-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAAT---AAGAAATAATNTAAGGG-------CCATAACT-TGCCAAAAGTCAATANGGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-------G---A-------------C--TGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTT-GGTGGTGAA-ATGGAAAGTT----------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATT-G---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAACAT-GCAATTGTTA-TATGTACAG----CACAAGACTTC--ATTCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAG----AAAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGC-TTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCA-TCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACT-GGACAT--TGTAT---T--CATACT--TGCTCGC-A----C-----GT-TTGAACATAATCAG-AT-GTAAACTTCAGAAG---GATTA--------GTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGC--GGA----CCAAAAGTTATGAAGTTAAGG-AGAA--G--TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGC-TT---GG-ACT-TATATTTAAAATCCCTATCAATATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------T-GCACATTGAAC-A---T--CTTACTGATACTTGC------CAACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAGT--AG--C--------GC--TTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GG------GC----CTGAA-GTCA---A--TAAGGCAGAA--CATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA---A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGG-------CC-------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCA-TAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----T-GGAC----AAC-TGAATGATATACTAATACTTGC------TA-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGGTGTAC--AT-------GC--TGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------T-GGA-----AG------T--CATACTGATACTCAC-A-----AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG---GA--AGAAAAAGTGC--TGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTC-TAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatactcactagcaaaatgTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC-----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGT---AAGAGTTAA--TAAGGG-------CCATAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC--T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAG-------CCATAACTGTGCCAAAAGTTAGTGCCGCCATatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACTAA-TAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 33333 66666666666666666 1111111 111 77777777777777777777 333333 1 444444444444 11 222 2 1 444444444444 111 3333333333333333 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 44444444444444 1 111 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 5 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 33333 11 4 99999999999999999 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 7 88888888 333 333 22 333 0 7 6 3 1 77 7 1 333333333333 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 00000000000000 2 3 3 999 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ..... .. . ................. . ....... . ... .................... . . ...... . ............ . . ........ ... ... .. ... . . . . . .. . . ............ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. .............. . . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 5 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 88888 88 0 22222222222222222 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 3 00000000 000 000 77 333 7 3 7 3 0 77 3 0 000000000000 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 00000000000000 5 3 7 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---TA---GC-------GCTGAC-AAGA---A---TTAC-AATT---AATAATAATTTAA------GGAGCG--GC----CCGAAAGTTA--A---TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTC-CTA-CAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---TA---AA-------GCTGAC-AAGA---A---TTAC-AATT---AATAATAATTTAA------GGAGCG--GC----CCGAAAGTTA--A---TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-----GA-------------------CTGAC-AAGT---A---TTAT-AATT---AACAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA--A---TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT--------------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG-A-TGTAAACTTCAGAAGGATTA---GT-------GATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GT-ATGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGC--TT-GG-ACT-TATATTTAAAATCCCTATCAA----TATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAG---TA---GC-------GCTTGC-AAGA---AAGTTTAC-AAAT---AGAAATAATCTAA------GG------GC----CTGAA-GTCA--A---TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGG---TGTACAT-------GCTGAC-CAGAAATA---TTGC-AATT---AATAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG---GA---AGAAAAAGTGCTGACAAAAA---A---TTACGAATA---AATA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTCACTAGCAAAATGTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatacTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-GCatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACTAA-TAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAcgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 222222 55555555555555555 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 333 1 66666666 111 3333333333333333 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 44444444444444 1 111 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 5 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 999999 11 4 66666666666666666 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 555555555 333 333 22 333 0 333 3 1 77 7 1 99999999 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 00000000000000 2 3 3 999 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ...... .. . ................. . ....... . ... .................... . . ...... . ............ . ......... ... ... .. ... . ... . . .. . . ........ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. .............. . . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 5 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 666666 88 0 22222222222222222 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 333333333 000 000 77 333 7 000 3 0 77 3 0 55555555 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 00000000000000 5 3 7 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GCGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCC-TA-CAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-----GA-------------------CTGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT----------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG-AT-GTAAACTTCAGAAGGATT-------A---GTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAATATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAG---T-------A---GCGCTTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GG------GC----CTGAA-GTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGG---T-------GTACATGCTGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG---GAAGAAAAA---GTGCTGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatactcactagcaaaatgTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-GCatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACTAA-TAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAcgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 33333 555555555555555 1111111 111 77777777777777777777 333333 1 444444444444 11 222 2 1 444444444444 111 3333333333333333 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 44444444444444 1 111 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 5 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 33333 11 4 333333333333333 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 7 88888888 333 333 22 333 0 7 6 3 1 77 7 1 333333333333 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 00000000000000 2 3 3 999 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ..... .. . ............... . ....... . ... .................... . . ...... . ............ . . ........ ... ... .. ... . . . . . .. . . ............ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. .............. . . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 5 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 88888 88 0 444444444444444 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 3 00000000 000 000 77 333 7 3 7 3 0 77 3 0 000000000000 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 00000000000000 5 3 7 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATT---AATAATAATTTAA------GGAGCG--GC----CCGAAAGTTA--A---TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTC-CTA-CAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATT---AATAATAATTTAA------GGAGCG--GC----CCGAAAGTTA--A---TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-----GA-------------------CTGAC-AAGT---A---TTAT-AATT---AACAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA--A---TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT--------------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG-A-TGTAAACTTCAGAAGGATT-------A---GTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GT-ATGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGC--TT-GG-ACT-TATATTTAAAATCCCTATCAA----TATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAG---T-------A---GCGCTTGC-AAGA---AAGTTTAC-AAAT---AGAAATAATCTAA------GG------GC----CTGAA-GTCA--A---TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGG---T-------GTACATGCTGAC-CAGAAATA---TTGC-AATT---AATAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG---GAAGAAAAA---GTGCTGACAAAAA---A---TTACGAATA---AATA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTCACTAGCAAAATGTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatacTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-GCatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACTAA-TAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAcgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 1 2222222222222 22222222222222 22222 111 555555555555555555555555555 444444444444 222222 555555555555555 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 333 1 66666666 111 3333333333333333 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 44444444444444 1 111 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 5 4 1 66 4 11 66 1111111111111 9999 1 55555555555555 3 5 55555 1 0 111 4 000000000000000000000000000 8 888888888888 8 1 999999 11 4 333333333333333 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 555555555 333 333 22 333 0 333 3 1 77 7 1 99999999 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 00000000000000 2 3 3 999 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . . ..... . . ... . ........................... . ............ . . ...... .. . ............... . ....... . ... .................... . . ...... . ............ . ......... ... ... .. ... . ... . . .. . . ........ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. .............. . . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 5 5 4 11 4 66 11 1111111111111 4444 9 88888888888888 2 0 66666 0 6 888 0 888888888888888888888888888 2 222222222222 0 0 666666 88 0 444444444444444 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 333333333 000 000 77 333 7 000 3 0 77 3 0 55555555 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 00000000000000 5 3 7 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCC-TA-CAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTATTTGACTGAAAA-GAATA--TTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGAACAT--AAC-T---T--CATACTTATACTCACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-----GA-------------------CTGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT----------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCACTTGACT--ATT-GAG-----TTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTGTTTAAC---------GGG--TTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACATTTAACactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAAagattgatt
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCATTTGACA--TCT-GAGTG--TT--AAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGA-CAT--TGTAT---T--CATACT--TGCTCGC----AC------GT-TTGAACATAATCAG-AT-GTAAACTTCAGAAGGATT-------A---GTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAATATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCATTTGACT--AAC-GA-----TTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCA-CATTGAAC-A---T--CTTACTGATACTTGC-----C-AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAG---T-------A---GCGCTTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GG------GC----CTGAA-GTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtg-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------ctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCATTAGAAT--AAT-TAGTA--TT--AAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGA-C----AAC-TGAATGATATACTAATACTTGC-----T-A-TAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGG---T-------GTACATGCTGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCATTTCACT--AATTG---G--TTTCCAT-AAGTGAC--TA-----TGGTGCA----CAAC--------------TGGA------AG------T--CATACTGATACTCAC----A--AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG---GAAGAAAAA---GTGCTGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatactcactagcaaaatgTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-GCatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACTAA-TAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTT---T--GAT-AAATGCATTTCAAT-CAGTGACAGTG--CACTACTACAcgccatatggtgatgatatg
blockSeqs : TG A A C TC A AC TA GTAGCAAT TAAT G TGATAAATGCA T A GTTC C AAC T AACAACTGGACATTGTATT G CAACAT G A AGAT CT C GAAGAAAAA A AAGT G AAA CTCGATGGAGCGGA A TGAAGT C CATTATGA A TGATTAAA TCA AAC AC TCG TTA . T GG T C CCTATCAA G ATG T T AAA AAAGTGAGACATG ATGCATA G CACAA C A AAA G A G AGTATGCTCG CG T GG GCA CTT TGAGA T T AAAA G G CACAGGAC A AAAC AGT AAGTGTTTGACTTACCAGGTA TC ATAACTG C A G G A T . TAATA . AT AA . . TT TTAA AT A AC
blockSeqs : CA A C C . . CC . ATGTAG . A ATCTGAGTG T . CAC G A G TTGGACAACTGAATGA A AAGTCA . C AGTT GT T GATTA . AATA . . GGGC . A . GTAGAGC . G . . . C T T T G AAG G . A AAAA C . ATA G A . C C T TCGCA C . TA . T ATCT G T . A A G . T . AAGTTTACAAAT CT ATAACT C . C
blockSeqs : CG A T C . . TT . G . A TAATTAGTA T . CC C A A TGCACATTGAACAT G TATAA . C GGCA GT T TGTAC . A . . . AA G . . A C . TA G G . A A G CTA . . AC . T ATAG T T . G A A . C . TCTACCATTAAA . . .
blockSeqs : TG . C T . . AT . G . G TATTGAG T . G T . . TGGAAGT . AC . A ATT TT A TA . A . . . T . . A C . CA G A . C . . . . A . G CTAG A A . G G A . . .
blockSeqs : CT . C G . . CT . G . G TAATTGG T . G G A . . A A . A . . . . A . T AA C T . . .
blockSeqs : C . A A . . TT . G . G TAACGA . . . C . . . G A .
blockSeqs : G . . . . . CT . G . C GGG . . .
blockSeqs : . . TT . . . .
blockSeqCons : TAATTGG******* CN*** TGGACACTGAATGT************* AGCAN******* NT GNA************ A****** A**
originalCons : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACT--AAT-GAGTG--TTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATATG------TGGA-CAT--AAC-T---T--CATACTGATACTCGC----AC-AGTAAGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG---T-------A---GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
finalCons : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCATTTGACTAATTGG-------TTTCAAC-TAGTGACAGTACN---TANTACAGAGACGACA--ATATGTGGACACTGAATGT-------------CATACTGATACTCGCAGCAN-------GT-TTGANCATAATCGG-ATTGAGAANTTTAGGAGGNA------------GTGCTGAC-AAGAA------TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAATATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGCA--AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA
Alignments
lowQualScore : 2222222222222 22222222222222 22222 33333333333333 11 3333333333 222222 5555555555555 1111111 111 77777777777777777777 333333 1 444444444444 111111111 11 222 333 1 444444444444 111 3333333333333333 1111111 111111 111 44444444444 11 111 3333333 1111 22222222 1111 111 444444444444444444444444444 11 44444444444444 1 111 1 1 22222 222 11 333333333 11 2222 333333333
lowQualScore : 66 9 4 1 66 4 11 66 1111111111111 9999 4 55555555555555 5 55555 1 22 99 6 77777777777777 22 5 6 6666666666 1 6 1 999999 11 4 4444444444444 8 9999999 8 444 11111111111111111111 0 7 222222 2 777777777777 7 555555555 333 333 22 333 0 333 3 1 77 7 1 333333333333 6 666 1 6 888 6666666666666666 7777777 6 777777 6 1 444 1 5 3 88888888888 55 6 333 0 0 888 888 5555555 1 1 4444 5 3 11111111 8 7777 444 666666666666666666666666666 0 11 00000000000000 2 3 3 999 1 5 5 77777 000 88 22 777777777 88 22 4444 22 888888888 22
lowQualScore : .. . . . .. . .. .. ............. .... . .............. . ..... . .. .. . .............. .. . . .......... . . . ...... .. . ............. . ....... . ... .................... . . ...... . ............ . ......... ... ... .. ... . ... . . .. . . ............ . ... . . ... ................ ....... . ...... . . ... . . . ........... .. . ... . . ... ... ....... . . .... . . ........ . .... ... ........................... . .. .............. . . . ... . . . ..... ... .. .. ......... .. .. .... .. ......... ..
lowQualScore : 88 4 5 4 11 4 66 11 1111111111111 4444 4 33333333333333 0 66666 0 00 22 2 88888888888888 22 2 7 2222222222 0 7 0 666666 88 0 6666666666666 0 0000000 0 000 77777777777777777777 7 3 777777 0 777777777777 3 333333333 000 000 77 333 7 000 3 0 77 3 0 000000000000 5 888 0 7 333 8888888888888888 5555555 7 555555 7 7 000 0 6 2 00000000000 88 7 000 2 4 888 333 0000000 0 7 2222 2 7 22222222 0 2222 000 000000000000000000000000000 2 55 00000000000000 5 3 7 555 0 5 5 00000 555 55 00 555555555 55 00 5555 00 555555555 00
consensus : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCA-TTTGACT------AAT-TG-GTTTCAAC-TAGTGACAGTA--C-CTANTACAGAGACGACA--ATNTG------TGGAC-A-CTGAACGTCATACTGATACT-CGC-------AGTAAGT-TTGGNCATAATCGG-ATTGAGAANTTTAGGAG-G------N--A-GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTC-CTA-CAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
Reference ( family-3348 ) : NNGAAATGTGCCCGTCGACACGAAATACCCCCGCTG--T-GCCCGTAG--CTTTATT-----G-------TAGCAATG----CCA-TTTGACT------AAT-TG-GTTTCAAC-TAGTGACAGTA--C-NTANTACAGAGACGACA--ATATG------TGGAC-A-CTGAATGTCATACTGATACT-CGC-------AGCANGT-TTGANCATAATCGG-ATTGAGAANTTTAGGAG-G------N--A-GTGCTGAC-AAGA---A---TTAC-AATTAA---TAATAATTTAA------GGAGCG--GC----CCGAAAGTTA---A--TAAGGCAGAAN--ATTATGA--TGGTAATAGCAANNNNNNNNCTAGNNNANNNTATATGAAACGCGAAGGAACATAGA---ACCTTAACGCTTTT-GG-GNTGNATATGNAAAGTCCCTATCAA----TATGGCCAAAATCGGTTGAGAAGTTTAGGAGAA-GT---GCTGACAAG---A------------TTTA---C---CATTA-AAA-TA---ATGAAAGGGCC---ATAACTCCGCNAAAAGTCGATGGACTGT-TGCGCGATGA--AC-ATGC-A-AACTGGACTTCATACTG---ATA--TGCCAT-G---CAANTTTGGC----CAAAATCGGTTGA------A-AAGT-T---CAGG---AGTAGAGCTGACAAGAAAGT-------TTACCATTAAATA---AGAAATAATNTAAGGGCCA-------TAACT-TGCCAAAAGTCAAT-ACGCAATNGNCATTATGTACGGTAATCGCAAGACTTCATATTCCCTAGCNNGCTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGNNCACTGACAAGATTAAAAANNTAATGCACATATACGATTTGATATNNAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : GAAATGTGCCTGTCGACAAAAAATGCTCCCATTG--T-GTCCATAG--CGATATT-----G-------CAGTAATG----CTA-TTTGACTGAAAAGAAT----ATTTCAAC-TAGTGACAGTA--C-TTGGTATAGAGACAATA--ATATG------CAGA--A-CATAACTTCATACTTATACT-CACTAATACCAGTAAGT-TTGGTCATAATCAG--TTGAGAAA-----GA-----------------CTGAC-AAGT---A---TTAT-AATTAA---CAATTATTTAA------GGAACATAACTCCTCCAAAAGTTA---A--TAGAATAGAATGAATTTT----TGATAAGAGCAAATTGATCCTTAGAGCACCATATATGAAACATGAAGGCACATAGC---ACCTTGATGCTTTTTGGTGGTGAA-ATGGAAAGTT--------------TGACTAAAATCAGTTGAGAAGTTTAGGAGAA-GT---GCTGGCAAG---A------------TTTA---C---AATTA-AAA-TC---ATCAAAGGGCC---ATAACTCTGCAACAAATCAATGGACTGT-TACACAATAA--AC-ATGC-A-AGCTGGATTTTATACTA---ATA--TGCCATTG---CAATTTTGGC----CAAAATCATTTGA------A-AAGT-T---CAGG---AGGACAGCTAACAAGA---T-------TTACCATTTAATATAAAAAAATAATAAAAGGGCCAAATTCCATAACTCTGCCAAAGGTCAAC-ATGCAATTGTTAT-ATGTACAG----CACAAGACTTCAT--TCTCTAGCTTGTTTGGCCAAAATCTGTGAGGAAATTTATCAGGAGGACACTGACAAGA----AAATGTAATGCACATATATGATTTGATATTAAATATAATTAAAAGGTCAGAAGAACGCCAAACATCAATAAACCTGAACATGATGATGATACACATAACTAGAATTCATACTTATACTCACTAATTTGCCAAAATCGGTTGACATGTTTTTGAGAAGTAAAGCTGACGAGAAA
gi|1 : ttGCCAAAATCGGTTGACATGTTTTTGAGAA-GTAAAGCTGACGAGAAAA------------TGTAATGCATATATTG-AGA--A---AT-ATAGGGCCAAAATTACTCCACGAA---CCAATGGatgtaatgcatatattgagaaatatagggccaaaattactccacgaaccaatggcttggaacataacagcgataa
gi|10 : ttgaaatgtgcctgtcgacaaaaaatgctcccattgtgtccatagcgatattgcagtaatgctatttgactgaaaagaatatttcaactagtgacagtacttggtatagagacaataatatgcagaacataacttcatacttatactcactaataccagtaagtttggtcataatcagttgagaaagactgacaagtattataattaacaattatttaaggaacataactcctccaaaagttaatagaatagaatgaatttttgataagagcaaattgatccttagagcaccatatatgaaacatgaaggcacatagcaccttgatgctttttggtggtgaaatggaaagtttgactaaaatcagttgagaagtttaggagaagtgctggcaagatttacaattaaaatcatcaaagggccataactctgcaacaaatcaatggactgttacacaataaacatgcaagctggattttatactaatatgccattgcaattttggccaaaatcatttgaaaagttcaggaggacagctaacaagatttaccatttaatataaaaaaataataaaagggccaaattccataactctgccaaaggtcaacatgcaattgttatatgtacagcacaagacttcattctctagcttgtttggccaaaatctgtgaggaaatttatcaggaggacactgacaagaaaatgtaatgcacatatatgatttgatattaaatataattaaaaggtcagaagaacgccaaacatcaataaacctgaacatgatgatgatacacataactagaattcatacttatactcactaatttGACAC-AAATAATCCCATTG--TAGCACA-AG--TCTAATT-----G-------TAGCAATG----CCA-CTTGACT-------AT-TG-AGTTTAACATAGTGACAGCA----GTACTACcttggaacataacagcgataa
gi|11 : GAAATGTGCCTGTCTATGTGAA-TACCCCCACTG--T-GTCCATAGTATTTTATT-----G-------TAGAAATG----CTG-TTTAAC-----------GG-GTTTCAAC-TTGCGGCGGTG--C-taaactaaactttgcttgatacttgctgtc
gi|12 : aactaGAAATGTGCCCGTCAACTCAAAAAA----CGTTGTCT-GCTTGTAG--CTTTATTATGTAG-------TAGCAATA----ACA-TTTAACA------GAT-TG-ATTactttat
gi|14 : aactaCCAAAATCGGTTGAGAA----AGGAGTA-GT---GTGGGCAAG---A------------TTTA---C---CATTAGAAA-TA---ACCAAA
gi|15 : ATGTGAAACACGAAGGAACATAGA---ACCTTAATGCTTTTAGG-GTTGGATATGCAAAa
gi|16 : ATAA--AC-ATGC-A-AACTGGAATTT-TACTGGCAACA--TACCATCT---CAATTTTGG
gi|2 : accCCGTCG---CGAA-TGTCCCCGCCG--T-GCATGTAG--CCTTATT-----G-------TAGCAATG----TCA-TTTGAC--------ATCTGAGTGTTAAC-TAGTGA-AGTA--C-C-AGTATAGAACCGACA--ATTTGAACAACTGGAC-A-TTGTAT-TCATACT--TGCT-CGC-------A---CGT-TTGAACATAATCAG-AT-GTAAACTTCAGAAG-G------ATTA-GTGATGAC-AAGA---A---TAAC-AATTAAAAATAATAATTTAACTCGATGGAGCG--GA----CCAAAAGTTATGAAGTTAAGG-AGAAG----TA-GAGCTGGCAAT-GTA-TGATTAAACTAATCAAAACTAGATGGACCG-GAACAAAAACAGATCGACCGGAACGCTT---GG-ACT-TATATTTAAAATCCCTATCAA----TATGGCCAAAATCGATTGCAAAGTTTAGGAGAA-GA---GCTAACAAG---A------------CTTA---C---CATTC-AAA-CA---ATGAAGGGATC---ATAACTGCACCAAAAGTCGATGGAT------CGCAATGAC-ACTATGCGG-AACTAGACTTCATACTA---ATA--
gi|3 : aG--T-GTCTATAA--CTTTATT-----G-------TAGTGATG----CCA-TTTGACT------AAC--G-ATTTCGAC-TAGTGACAGTAGTT-CTACTACAGAGATGTGA--ATGTG------TGCAC-A-TTGAACATCTTACTGATACT-TGCC------AACATGT-TTCACCTAAATCAG--TTGAGAAGTTTAAGAG--------T--A-GCGCTTGC-AAGA---AAGTTTAC-AAATAG---AAATAATCTAA------GG------GC----CTGAA-GTCA---A--TAAGGCAGAAC--ATTATGA--TGGTAATAGCAA
gi|3 : TGC-A-CATTGAACATCTTACTG---ATACTTGCCA--A---CATGTTTCAC----CTAAATCAGTTGA------G-AAGT-T---TAAG---AGTAGCGCTTGCAAGAAAGT-------TTAC----AAAT----AGAAATAATCTAAGGGCC--------------TG----AAGTCAATAAGGCA--GAACATTATG-ATGGTAATAGCAA---TTCATATTTCCTAATAAGCTTGGTCAAAATC---------ATT--TTAAGAGTTCACTGACAAGATTAAAAAATTAA---A-----ACAATTTGATATACAAttcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacaactgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgACA--ATTTGA-----TATAC-AACTGAACTTCATACTGAAATTCCAT-------AGCAATT-TTGGTCATAATCctgaacttcatactgaaattccatagcaattttggtcataatcaattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|3 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaa-AACTGAACTTCATACTG---AAA--TTCCATAG---CAATTTTGGT----CATAATCAATTAA------aattaatgatcaattaatgatgacattatacaatattcaacgtt
gi|4 : gtgtctataactttattgtagtgatgccatttgactaacgatttcgactagtgacagtagttctactacagagatgtgaatgtgtgcacattgaacatcttactgatacttgccaacatgtttcacctaaatcagttgagaagtttaagagtagcgcttgcaagaaagtttacaaatagaaataatctaagggcctgaagtcaataaggcagaacattatgatggtaatagcaattcatatttcctaataagcttggtcaaaatcattttaagagttcactgacaagattaaaaaattaaaacaatttgatatacAAATGTGTCTGTCAATA-GAAATACCTTGGCT---T-ACTTGTAG--CTTTATT-----G-------TAGCAATG----CCA-TTAGAAT------AAT-TA-GTATTAAC-TAGTGATAGTA----GTATTACAGAGATGACAACATATGT-----TGGACAA-CTGAATGATATACTAATACT-TGC-------TATAACTGTTGGCTATAATC---ATTTAGAAGTTTAGGGGTG------T--ACATGCTGAC-CAGAAATA---TTGC-AATTAA---TAtgatcaattaatgatgacattatacaatattcaacgtt
gi|5 : tcatttgtaccaatgtcagtaaaacaccatagattgtaacctagttttaaaactatGTGCCTGGTGACATGAA-TGCCTGCACTT--T-GCCTGTAG--CCTTATT--------------AGCAATATAATCCA-TTTCACT------AAT-TG-GTTTCCAT-AAGTGAC--TA-----TGGTGCA-------CA--A------------------CTGGAAGTCATACTGATACT-CACA------AGTCAGT-TTAAACATAATTGGCA--GAGAATTTAAGGAG-GAAGAAAA--A-GTGCTGACAAAAA---A---TTACGAATAAA---TA
gi|6 : atcatagcatttctttggctattgactaaacaatccagatttacactaaaaggTCACTAGCAAAATGTATG---AAAAGTGTTTGAG---TTTATGAAAATGTA--GCTGACAAG---AAAGTGAGACATGTTTA---C---CATAA-AAA-CACAAATGAA-GGGCC---GTAACTCCGCAAACATTCGACGGAA-GTATGCTCGGTGACGAA-ACGCTA-AACTAGATTTCATATTG---ATA--GTCTCTAG---CACATTAGGCAAAACAAAA-CGGCTAA------A-AGGT-T----AGGAGTAGTAGAGCTGACACGAt
gi|7 : actaatttcataaaatacTAAGAGTA-AT---GCTGAAAAC---A------------CTTA---A---CATTA-AAAATA---ATGAAAAGGCC---ATATCTCAACCAGAAGTTAATGGACTA----------GA--AC-ATG---------------ACATTG---ATA--TGC----G---CAACTC-GGC--------GTCG-TT--------A-AAGT-TAAACAGG---AGTACAGCTGACAAGAAAGTGTTTGACTTACC---AGGTA---AGAGTTAA--TAAGGGCCA-------TAACT-TGCCAACAG
gi|8 : gaaatgatgaataaaatgtgcaagtatgg--AC-TTGC-ACAACAAGACTTTAAACTG---ATA---GTC-T-GAGACAAATTTGAC----CAAACT-GGTGGACACAGGACAAGTAT---CTGG---AGTAGGCCAGACAAGA---T-------CTACCATTAAA--------AATAACTTAAAAGCCA-------TAACTGTGCCAAAAGTTAGT-GCatggaccagaatgca
gi|9 : gaccaaaatatgacaaaagAAATGTGCCCATCGATACT-AATAACCAAACTG--T-GTTTTAAA--CTTTATT-----GTAGCAATTAGCAATG----CCATTTTGA-T------AAA-TGCATTTCAAT-CAGTGACAGTG--CACTACTACAcgccatatggtgatgatatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATGATGAATAAAATGTGCAAGTATGGTAAGAGTAATGCTGACACCATTTAACATAAAAAA