lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555 11 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111 11111111 1
lowQualScore : 99999 333 0 33 33 00000000 33 8888888 2 66 2 5 0 3 0 6666 2 2 66666 33 444 2 2 1 3 1 0 88 3 0 5 7 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 55555 4 55 2 3 5 3 55 3 3 3 555 6 11111111 3 6666 44 2 5 44 44 33 2 77777 2 1 6 0 333 666 4
lowQualScore : ..... ... . .. .. ........ .. ....... . .. . . . . . .... . . ..... .. ... . . . . . . .. . . . . . .......................................................................................................................... . ..... . .. . . . . .. . . . ... . ........ . .... .. . . .. .. .. . ..... . . . . ... ... .
lowQualScore : 88888 555 8 44 77 33333333 77 7777777 0 11 7 3 2 3 7 1111 9 7 55555 77 777 7 7 7 3 9 5 66 6 9 0 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 66666 0 00 2 6 6 6 55 6 6 6 444 2 22222222 1 5555 22 7 4 22 22 00 8 11111 9 4 1 7 999 111 7
consensus : ATATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATTCTGTTCGAA--ACAC------TGCAC--T-------GATATTGGTATGGCTGTGTCAGCTGATCATTTTT-T-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCG-TAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TTTT-TT--CAATTGTTTGATTAACAACGTNTCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCA---ATACCGACA-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGCACTTTAAACAGAGTAAAGTT---TC---TTTTTTTGCTGAGTAT
Reference ( gi|2 ) : ATATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATCCTGTTTGAA--AC--------TGCAC--T-------GATATTGGTATGGCTGTGTCACTTGATCATTTTT-T-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCA-TAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCTTAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA-TGTTG-----TTTT-TT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACA---ATACCGACA-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGCACTTTAAACAGAGTAAAGTT---TC---TTTTTTTGCTCAGTAT
gi|7 : ATATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATCCTGTTTGAA--ACAC------TGCAC--T-------GATATTGGTATGGCTATGTCAGTTGATCATTTTT-T-AACAAATCTGTATTTTCATTGGACATTTGAAGTTTAGTTTTGT----ACCCA-TAAATTAATGAT-AAAGTGGACAAGGGGT---GTTATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TGTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-G
gi|17 : ATATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCAAAAATTTG--TTATTT-AAAAATTCTGTTCAAA--ACAC------TGCAA--T-------GATATTGATATGGTTGTGAAAACTGATTTTTTTT-T-ATCAAAGCTGTATTTTCTTTGAACATTTTAAGTGTAATTTTGT----ACCTG-TAAATTAACGAT-AAAGTGGACAAGAGGCATAGTAATAAATAGTAATGTT--TT---G-TA-ACTGAAACTGAAA-TTGCATTaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagttaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtcaaatttctttttttactcagta
gi|1 : TATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATCCTGTTTGAA--ACAC------TGCAC--T-------GATATTGGTATGGCTGTGTCAGTTGATCATTTTT-T-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ATCCA-TAAATAAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--T-TGTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTGT----TTTT-TT--CAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGTGTATCTACCT-GGTTGACTCT-GACATGTGCAAATCATGCAAAACAGCA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACA---ATACCGACT-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGCACTTTAAACAGAGTAAAGTT---TC---TTTTTTTGCTCAGTAT
gi|1 : TATACTGAGCAAAAAA-A---GAA---ACTTTACTCTa
gi|4 : tatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctgtgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtatccataaataaatgataaagtggacaaggggtgtaatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttcaattgtgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttttcaattggttgattaacaacatatctgtttaagtaatgcacatttgtgtatctacctggttgactctgacatgtgcaaatcatgcaaaacagcatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgactttttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacTATACTCAGCAAAAAA-A---GAA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATCCTGTTAGAA--ACAC------TGCAC--T-------GATATTGGTATGGCTGTGTCAGTTTATAATTTTT-T-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCA-TAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATAAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTT-AA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TTTT-TT--CAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATTATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACA---ATACCGACA-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----T-AAGTTATTGAACTTTAAACAGAGTAAAGTT---TC---TTTTTTTGCTCAGT
gi|3 : TATACTGAACAAAAAA-----GAA---ACTTTACTCT
gi|6 : atactcagcaaaaaaaggaactttactctccatgaattggttattttcaaaatcctgtctgaaacactgcactgatattggtatggctgtgtcagttgatcattttgtaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaacgggtataatcaaaaataacgtttttcaactgaaactgaaatttgcattgttattattgcttttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttttaatgtttgattaacaacatatctgtttatgtaatgcacatttgtgaatctgcctgttggactctggcatgtgcaaatcatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgaaacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacTATACTCAGCAAAAAA-----GAA---ACTTTACTCTCCGTGAATTGG--TTATTTTCAAAATCATGTTTGAA--ACAC------TGCAC--T-------GACATTAGTATGGCTGTGTCAGTTGATCATTTTG-T-AACAAATCTGTATTTTCATTGGACATTTGGAGTGTAGTTTTGT----ACCCA-TAACTTAATGAT-AAAATGGACAAGGGGT---GTAAACAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-AAAGACTAATATTAGTGAGGCACAGTTGTG-AAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCAGAATTA-TGTTG-----TTTT-TTTGCAATTGTTTGATT---AACATTTCTGTTTATGTTATGCATATTTGTGTATCTACCT-GGTGGACTCT-GGCACGTGCAAATCATGCAAAACAGGA---TTTTACAGCTGGGTTATGATCACATGTGTTTAAAAAAAACA-AG-TTTTCATAATTCAAACAGACTGGTACA---CTACCAACA-T--------TGTTTTA----TT--AACATCTTAGTTATA--AA--TGT-AGAAATT-AA-----A-AAGTTATTGCACTTTAAACA------------------TTTTTTTGGTCAGTA
gi|5 : TATACTCAGCAAAAAA-T---GAA----CATTACTCTCCATAAACTGG--TCATTTTCAAAATCCTGTTTGAA--ACAC------TACAC--T-------GACATTGGTATGGCTGTTTCAGTTGATCATTTTG-T-TACAAATCTGTACTT-CATTGGACATTTGAAATGTAGTTTTGT----ACCCC-TTACTTAATGAT-AAAGTGGACAA----------------AAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTATAATTGTTGT-TTTATAA--G-TTTGTTTTCTAA--CTAATTTTAGTGAGGCATAGTGGTG-AAA--CAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACACAATTA-TGTTGGTTTTTTTT-TT--CAATTGTTTGATTAACAACATTTATGTGTATGTAATGCACATTTGTGTATGTACCTCGGTAGATTCC-TGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAAAA-AACTTTTCATAATTCAATCAGACTGACGGA---AGACTGACA-T--------G-TTTTG----TT--AACATCTAAGTTATA--AA--TGT-AGAAATTAAA-----A-AAGTAATTCCACTTTAAACAAAGTAAAGTT---TCTTTTTTTTTTACTCAGTATa
gi|5 : TATACTGAGTAAAAAA-AAAAGAA---ACTTTACTTTGTTTAAAGTGGAATTACTTTa
gi|15 : tatactcagcaaaaaatgaacattactctccataaactggtcattttcaaaatcctgtttgaaacactacactgacattggtatggctgtttcagttgatcattttgttacaaatctgtacttcattggacatttgaaatgtagttttgtaccccttacttaatgataaagtggacaaaaataacgttttttaactgaaactgaaatttgcattataattgttgttttataagtttgttttctaactaattttagtgaggcatagtggtgaaacaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccacacaattatgttggttttttttttcaattgtttgattaacaacatttatgtgtatgtaatgcacatttgtgtatgtacctcggtagattcctgcacgtgcaaatcatgcaaaacaggatttttacagctgggttattatcacttgtgtttaaataaaaaaacttttcataattcaatcagactgacggaagactgacatgttttgttaacatctaagttataaatgtagaaattaaaTATACTCAGCAAAAAA-T---GAA---ACTTTACTCTCCATAAATTGG--TGATTTTAAACATTCTGTTCCAA--AC--------TCTACAAT-------GATATTGATATGTTTGTGTCAGCTGATCATTTTT-TTAACAAATCTGTGTTTCCATTGAGCGTTTTATGTGTAGTTTTGT-----CCTG-TAAATTAACAAT-AAAATAAACAAGGGGC---GTAATCAAAAATAATGTT--TT---T-TA-ACTGAAACT-AAATTTGCAGTGTTTTTGTTG
gi|9 : TATACTCAACCCAAAACA---GAA---ACAATGCTCTACATCAATTGA--TTATTTTCAAATTTATTTTCGAA--ACAATTGA--TGTAA--T-------GATATCGGTATGGATGTGTTAGATGACCATTTTT-A-AAATAATCTGCTTTTTCATTGAACAGTTTAAGTAAGGTTTT-T----ATCCG-TTAATGAATCAA-AAAGTGGAAAAGAGGC---ATAATGAAAAATAATGTT--TT---TGTGCACTAAAACTGAAACTTGTATAGTTATTGTTGA--GTTCAA--G-ATTA-TTT-TAAGACTCACATTAGTGAAACATTGTTGTT-AAA-gtgc
gi|16 : TATACTCAGCAAAAAA-----GAA---ACTTTACTCTC
gi|19 : cgattgtttgattaataacgtgtctgattagataatgcacatttgtgtatctacctgatggactctggcacgtgccaatcatgcaaaacaaggtttttttacagccggatgatcaccacttgtcaaacatactgacgttatactaacattttatacatacaactaagttattcatgtataattaaaacaagtattgaactttaaaTATACTCAGCAAAA-A-A---GAA---ACATTACTCTCCATAAATTGA--TTATTTTCAAAATTCTTTTCGAAACAC--------TGCAA--T-------GATATTGATATGGCTGTGTCAGCTGATCA-TTTT-T-AACAAATCTGTATTTTCATTGAACATTTTATGTGTA
gi|3 : ATACTCAGCAAAAAA-A---GGA---ACTTTACTCTCCATGAATTGG--TTATTTTCAAAATCCTGTCTGAA--ACAC------TGCAC--T-------GATATTGGTATGGCTGTGTCAGTTGATCATTTTG-T-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCA-TAAATTAATGAT-AAAGTGGACAACGGGT---ATAATCAAAAATAACGTT--TT---T-CA-ACTGAAACTGAAATTTGCATTGTTATTATTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TTTT-TT--TAA-TGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGAATCTGCCT-GTTGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGAAACA---ATACCGACA-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGCACTTTAAACAGAGTAAAGTT---TC----TTTTTTGTTCAGTATnnnnnnnnnnttttctctctcttaagctgcatatagataaataaaaaagttt
gi|12 : ATACTCAGCAAAAAA-A---GAAGAAACTTTACTCTCCATAAATTTG--TTATTTCCAAAACTCTGTTCGAA--AC-----------AC--T-------G-CAATGATATGG-------------TCATTTTA-T-A-CAAATCTTTATTTCCATTGAATATTTTTAGTGTATTTTTGT----ACCCA-TAAATTAACGAT-TAAGTGGACAAGGGGC---ATAATCAAAAATAATGTT--TT---G-TA-ACTGAAACCGAAA-TTGCATTGTTATTGTTCC-TGTTGAAG-G-TTTGATTa
gi|18 : ACATTCAGTAACAAA-A----------CTTTACTCTTCATAAATTGG--TTGTTTCCAAAAATATATTTGAA--ACAC------TGCAA--T-------GATATTGATATTGTTGTGTCAACTAATCAGTTTTGT-AAAATATCTGTATTTTAATTGAATATTTTA-GTGTAGTCTTGT----ACCAA-TAAATTAACGAT-AACGTGAATAAGGCGC---ATAATC-AAAATAATGTG--TT---T-TA-ACTGAAACT---------ATTATTGTTGCTGC-Tagctcacctgagctaataata
gi|8 : TACTGAGCAAAAAA-AA--GAA---ACTTTACTCTaa
gi|13 : cagatgtgcctcatccctttaactaatattaatgaaacaagcaagtcagtcggacagtaggaattacaaatttattctttatttattaagggtaattcgattgacaaagtcaatcttcattgaggcccactttaaaccagtacatcattaaagaaggacacaaaataatgttgttgtttttttcaattgtttgataaacaacatttctgtttatgttatacttgtttgtgtatctatctggtggacgccggcacgtgcaaatcatttgttacagctcgatgattatcacttgtgtttaaataaacaagtttttataattcaaacaaactgaggtaataacaacgtttttttattaacatctaagttataactgtagaaattaacaaagttattttaaacTACTTAG-AAAAAT-T---GAA---ACGTTGCTTTCCATCAATTGA--TAATTTTCAAACTTACGTTTGAA--ACAC------TGCAA--T-------GATAGTGATATTGTTGTATCAGATTATCATTTTA-T-AACAAATATGTATATTCATTAAACATTTTAAGTGCAGTTTTGTACCGACCCG-TAAATTAACGATAAAAGTAGATAAGGGAC---ATAATCAAAAATAATGTTTGTT---T-TA-ACTAAAACTGAAATTTGCATTTCTATTGTTGC-TGCTAAA--G-T
gi|4 : ACTGAGCAAAAAA-A---GAA---ACTTTACTCTa
gi|10 : tatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgttagaaacactgcactgatattggtatggctgtgtcagtttataattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaaggggtgtaataaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttaagtttgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgttttttcaattgtttgattaacaacatatctgtttatgttatgcacatttgtgtatctacctggtggactccggcatgtgcaaattatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaataagttattgaactttaaacACTCAGCAAAAAA-A---GAA---ATTTCACTCTC
gi|11 : agtgctgcatcattgtgaaacgtaattatgatgtgatttcaattgtttagttaataacgtgtctgtttaagtaatggaaatttgtgtatctacctggtggactcttgacacgtgcaaaacatctttttacagctggattattaacatgcgtatttaaataaacaagattccactagtcaaacagactgatgcaaaaccaacattttttacttatatctaagttaaacttgtagaaataaaaaagttattgaacttttaaATGAATCGA--TTATTTTCAAAAGTCTGTTCAAA--AC--------ACCAT--TATGATATGATACTGGTATGGATGTGACAGTTGGTCATTCAT-C-AACAGATCCTTATTTTCATTGCACATTTGAAGTGTAGTTTT-T----GGCCAGTCAATTAACAAT-AAAGCGGACAAAGGGC---AGCATCAAA---AACATT--TT---T-CA-ACTGAAATTGAAATGTGCATTGTTATTATTGC-TGCTCAA--ATTTTATTTT-TAAGATTATCATTAGTGACGCATCGGTGTGTAAA-
gi|21 : ATTGG--TTATCTCTAAAATTCTATACGAA--ACAGTTTGTCTGCAC--T-------GATTTTGATAT-ATTGTGTCAACTGATCATTTTT-TAAACAAATTTGTATTTTCAATGAACATTTTAAGCGTAGTTTC--------------------------AAGTGGAAAAGGGGC---AAAATAAAAAATAATG-----------TA-ACTGAAA-------TTGCATTGTTATTGTTG
gi|22 : -AAAGTGGCCAAAGGGC---ATAATAAGAAGTAACGTT--TTTTTT-TA-ACTGATACTGAAATTGACATTGTTACTGTTGTGTTTTCAACTG-TTTGGTTt
gi|7 : TTA-TATTG-----TTTT-TT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTAGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGTTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACA---ATACCGACA-T--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGCACTTTAAACAGAGTCAAATT---TC---TTTTTTTACTCAGTAaataacgtgtctgtttatgtaatgcaaatgtgtgtatcaacctggtggactctggcacttgccaatcg
gi|10 : atatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctatgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtttagttttgtacccataaattaatgataaagtggacaaggggtgttatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgctgttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaaTTA-TGATG-----TGAT-TT--CAATTGTTTAGTTAATAACGTGTCTGTTTAAGTAATGGAAATTTGTGTATCTACCT-GGTGGACTCTTGACACGTGCAAAACAT------C------TTTTTACAGCTGGATTATTAACATGCGTATTT-AAATAAACA-AG-ATTCCACTAGTCAAACAGACTGATGCA---AAACCAACA-T--------T-TTTTA----CT--TATATCTAA-GT-TA--AACTTGT-AGAAA-TAAA-----A-AAGTTATTGAACTTTTAAGAGAGTGAAATT---TC---TTTTTTTGCTGAGT
gi|22 : agtgctgcatcattgtgaaacgtaaTTACTGTTG-----TGTT-TT--CAACTGTTTGGTTAATAACGTGTCTGTTTATGTAATGCAAATGTGTGTATCAACCT-GGTGGACTCT-GGCACTTGCCAATC
gi|8 : aaagtggccaaagggcataataagaagtaacgtttttttttaactgatactgaaattgacattg-TGTTG-----TTTTTTT--CAATTGTTTGATAAACAACATTTCTGTTTATGTTATACTTGTTTGTGTATCTATCT-GGTGGACGCC-GGCACGTGCAAATCAT-------------TTGTTACAGCTCGATGATTATCACTTGTGTTT-AAATAAACA-AG-TTTTTATAATTCAAACAAACTGAGGTA---ATAACAACGTT--------T-TTTTA----TT--AACATCTAAGTTATA--AC--TGT-AGAAATTAAC-----A-AAGTTAT-----TTTAAACAGAGTAAAGTT---TCT--TTTTTTTGCTCAGTAg
gi|14 : cagatgtgcctcatccctttaactaatattaatgaaacaagcaagtcagtcggacagtaggaattacaaatttattctttatttattaagggtaattcgattgacaaagtcaatcttcattgaggcccactttaaaccagtacatcattaaagaaggacacaaaataatgtTTT-TT--CAATTGTTTGATTAACAACCTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCTTAATTCAAACAGACTGACACA---ATACCAACATT--------T-TTTTA----TT--AACATCTTA-TTATA--AA--TGT-TGAAATTAAA-----A-AAGTTATTGAACTTTAAACAGAGTAA
gi|16 : --CGATTGTTTGATTAATAACGTGTCTGATTAGATAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCACGTGCCAATCATGCAAAACAAGGTTTTTTTACAGCCGGATGATCACCACTTGT-----------------------------CAAACATACTGACGTT---ATACTAACA-T--------T-TTATA----CA--TACAACTAAGTTATT--CA--TGTAT--AATTAAA-----ACAAG-TATTGAACTTTAAAGAGAGTAAAGTT---TC----TTTTTTGCTGAGTAT
gi|23 : TTTACAGCTGAATATTTATCACGTGTGTAT-CAATAAACACAG--TTTCATTAGCTAAACAAACTGACACA---GTGTTGACA-T--------T-TTCAAACACTTAAAACGTTTTACTCATAGGAA--T-----AAA--GAA-----A-AACGTATTGCATTTTAAAGAAAGTAAAGTT---TC---a
gi|4 : ttaAATT---ATAAACTGACACAGCCATACCAATA-TCAGTGCAGT-GTTT-----CT--AACA----------G--GA--TTT-TGAAAATAAC-----C-AATTCATGG----------AGAGTAAAGTT---TC---TTTTTTTGCTGAGTATat
gi|15 : tCAG-CTGACACA---A-----ACA-T--------------A----TC--AATATC--A-TTGTA--GA--GTT-TGGAACAGAATGTTTA-AAATCAC--CAATTTATGGAGAGTAAAGTT---TC---ATTTTTTGCTGAGTATttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaaggggtgtaataaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttaagtttgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgttttttcaattgtttgattaacaacatatctgtttatgttatgcacatttgtgtatctacctggtggactccggcatgtgcaaattatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaataagttattgaactttaaacagagtaaagtttctttttttgctcagt
gi|12 : tT-TGGAAATAAC-----A-AATTTATGG----------AGAGTAAAGTTTCTTC---TTTTTTTGCTGAGTATatcatttttttaacaaatctgtgtttccattgagcgttttatgtgtagttttgtcctgtaaattaacaataaaataaacaaggggcgtaatcaaaaataatgttttttaactgaaactaaatttgcagtgtttttgttggtgc
gi|1 : AGAGTAAAGTT---TC---TTTTTTTGCTGAGTATaactctgttcgaaacactgcaatgatatggtcattttatacaaatctttatttccattgaatatttttagtgtatttttgtacccataaattaacgattaagtggacaaggggcataatcaaaaataatgttttgtaactgaaaccgaaattgcattgttattgttcctgttgaaggtttgattagctcacctgagctaataata
gi|3 : tAGAGTAAAGTT---CC---TTTTTTTGCTGAGTATccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctgtgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtatccataaataaatgataaagtggacaaggggtgtaatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttcaattgtgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttttcaattggttgattaacaacatatctgtttaagtaatgcacatttgtgtatctacctggttgactctgacatgtgcaaatcatgcaaaacagcatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgactttttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtaaagtttctttttttgctcagtata
gi|6 : AGAGTAAAGTT---TC---TT-TTTTGCTGAGTATccatgaattggttattttcaaaatcctgtctgaaacactgcactgatattggtatggctgtgtcagttgatcattttgtaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaacgggtataatcaaaaataacgtttttcaactgaaactgaaatttgcattgttattattgcttttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtttttttaatgtttgattaacaacatatctgtttatgtaatgcacatttgtgaatctgcctgttggactctggcatgtgcaaatcatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgaaacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtaaagtttcttttttgttcagtata
gi|7 : tAGAGTAAAGTT---TC---TTTTTTTGCTGAGTATccgtgaattggttattttcaaaatcatgtttgaaacactgcactgacattagtatggctgtgtcagttgatcattttgtaacaaatctgtattttcattggacatttggagtgtagttttgtacccataacttaatgataaaatggacaaggggtgtaaacaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttcaagtttgttttaaagactaatattagtgaggcacagttgtgaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccgcagaattatgttgtttttttgcaattgtttgattaacatttctgtttatgttatgcatatttgtgtatctacctggtggactctggcacgtgcaaatcatgcaaaacaggattttacagctgggttatgatcacatgtgtttaaaaaaaacaagttttcataattcaaacagactggtacactaccaacattgttttattaacatcttagttataaatgtagaaattaaaaagttattgcactttaaacatttttttggtcagtaa
gi|17 : atAGAGTAAAGTT---TC---TTTTTTTGCTGAGTATccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctatgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtttagttttgtacccataaattaatgataaagtggacaaggggtgttatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgctgttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagttaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtcaaatttctttttttactcagta
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): CACGATTGCCTTATGGCTATTTAAATTAAATATATATTCAAATACGATCAAGTTAATCTTCACAACATACAAATTGCTAATTAATTTAGTAAAGTTTTATTTATAAAGGATGACTCAATTGACAAAGCCAACTCTCATTGAGGTCATCTCAAAACAGGTTCATCATAATACAAAGAATATAAAAT
Unaligned ( gi|24 ): ATTCAGGTTTTTTTTATTTTGTGAGAGTGATTCAAATGACAAAGCCAATTTTCATTGAGGCCCTCTTTAACA
Unaligned ( gi|25 ): TCTTTATTTATAGAGCGTGACTCAAGTGACAAAGTCAATCGTCATAGAAACCCTCTAAACAT
Unaligned ( gi|26 ): AAAGAAAGTATTGCGGAGCTAAAAGTACTAATACTCAATACCATTTTTGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 1 1111 1
lowQualScore : 2 555 777777 5555 1 8888888 2 5 0 2 1 5555 1 0 2 444 33 444 2 2 1 3 1 77 3 4 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 4 44444 7777 44 3 1 3 44 55 0 3 3 3 0 6 3 7777 44 6 44 44 5 3 3 0 0000 0
lowQualScore : . ... ...... .... . ....... . . . . . .... . . . ... .. ... . . . . . .. . . . ................................................................................................................. . . . ..... .... .. . . . .. .. . . . . . . . .... .. . .. .. . . . . .... .
lowQualScore : 9 000 222222 3333 9 1111111 7 0 2 5 0 7777 9 2 5 444 44 444 5 5 1 1 0 99 3 4 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 0 0 00000 7777 66 5 0 3 00 00 1 3 3 3 7 7 3 1111 66 7 66 66 8 3 3 4 8888 0
consensus : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
Reference ( family-3303 ) : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATTCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGCTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTNTCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTGAGTAT
gi|1 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ATCCATAAATAAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--T-TGTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTGT----TT----TTTT--CAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGTGTATCTACCT-GGTTGACTCT-GACATGTGCAAATCATGCAAAACAGCA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACT-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
gi|10 : CGTAATTA-TGATG-----TG----ATTT--CAATTGTTTAGTTAATAACGTGTCTGTTTAAGTAATGGAAATTTGTGTATCTACCT-GGTGGACTCTTGACACGTGCAAAACAT------C------TTTTTACAGCTGGATTATTAACATGCGTATTT-AAATAAACA-AG-ATTCCACTAGTCAAACAGACTGATGCAAAACCAACA-TT-TTTTA----CT--TATATCTAA-GT-TA--AACTTGTAGA-AA-TAAAA-AAGTTATTGAACTTTTAAGAGAGTGAAATTTC---TTTTTTTGCTGAGTa
gi|11 : agtgctgcatcattgtgaaaATGAATCGATTATTTTCAAAAGTCTGTTCAAAACA------C------CATTATGATATGATACTGGTATGGATGTGACAGTTGGTCA-TTCATC-AACAGATCCTTATTTTCATTGCACATTTGAAGTGTAGTTTTTG----GCCAGTCAATTAACAAT-AAAGCGGACAAAGGGC---AGCATCAAA---AACATT--TT---T-CA-ACTGAAATTGAAATGTGCATTGTTATTATTGC-TGCTCAA--ATTTTATTTT-TAAGATTATCATTAGTGACGCATCGGTGTGTAAA-
gi|12 : ATACTCAGCAAAAAA-AGAAGAAACTTTACTCTCCATAAATTTGTTATTTCCAAAACTCTGTTCGAAACA------CT----GCAAT-------GATAT-------------------GGTCA-TTTTAT-A-CAAATCTTTATTTCCATTGAATATTTTTAGTGTATTTTTGT----ACCCATAAATTAACGAT-TAAGTGGACAAGGGGC---ATAATCAAAAATAATGTT--TT---G-TA-ACTGAAACCGAAA-TTGCATTGTTATTGTTCC-TGTTGAAG-G-TTTGATT
gi|13 : TACTTAG-AAAAAT-TGAA---ACGTTGCTTTCCATCAATTGATAATTTTCAAACTTACGTTTGAAACA------CT----GCAAT-------GATAGTGATATTGTTGTATCAGATTATCA-TTTTAT-AACAAATATGTATATTCATTAAACATTTTAAGTGCAGTTTTGTACCGACCCGTAAATTAACGATAAAAGTAGATAAGGGAC---ATAATCAAAAATAATGTTTGTT---T-TA-ACTAAAACTGAAATTTGCATTTCTATTGTTGC-TGCTAAA--G-Tagctcacctgagctaataata
gi|14 : T----TTTT--CAATTGTTTGATTAACAACCTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCTTAATTCAAACAGACTGACACAATACCAACATTT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGAACTTTAAACAGAGTAAa
gi|15 : TATACTCAGCAAAAAA-TGAA---ACTTTACTCTCCATAAATTGGTGATTTTAAACATTCTGTTCCAAACT------CT----ACAAT-------GATATTGATATGTTTGTGTCAGCTGATCATTTTTTT-AACAAATCTGTGTTTCCATTGAGCGTTTTATGTGTAGTTTTGT-----CCTGTAAATTAACAAT-AAAATAAACAAGGGGC---GTAATCAAAAATAATGTT--TT---T-TA-ACTGAAACT-AAATTTGCAGTGTTTTTGTTG
gi|16 : --CGATTGTTTGATTAATAACGTGTCTGATTAGATAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCACGTGCCAATCATGCAAAACAAGGTTTTTTTACAGCCGGATGATCACCACTTG-----------------------------TCAAACATACTGACGTTATACTAACA-TT-TTATA----CA--TACAACTAAGTTATT--CA--TGT--ATAATTAAAACAAG-TATTGAACTTTAAAGAGAGTAAAGTTTC----TTTTTTGCTGAGTATgtgc
gi|17 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCAAAAATTTGTTATTT-AAAAATTCTGTTCAAAACA------CT----GCAAT-------GATATTGATATGGTTGTGAAAACTGATTT-TTTTTT-ATCAAAGCTGTATTTTCTTTGAACATTTTAAGTGTAATTTTGT----ACCTGTAAATTAACGAT-AAAGTGGACAAGAGGCATAGTAATAAATAGTAATGTT--TT---G-TA-ACTGAAACTGAAA-TTGCATTa
gi|18 : ACATTCAGTAACAAA-A-------CTTTACTCTTCATAAATTGGTTGTTTCCAAAAATATATTTGAAACA------CT----GCAAT-------GATATTGATATTGTTGTGTCAACTAATCAGTTTTGT-AAAATATCTGTATTTTAATTGAATATTTT-AGTGTAGTCTTGT----ACCAATAAATTAACGAT-AACGTGAATAAGGCGC---ATAATC-AAAATAATGTG--TT---T-TA-ACTGAAACT---------ATTATTGTTGCTGC-T
gi|19 : TATACTCAGCAAAA-A-AGAA---ACATTACTCTCCATAAATTGATTATTTTCAAAATTCTTTTCGAAACA------CT----GCAAT-------GATATTGATATGGCTGTGTCAGCTGATCA--TTTTT-AACAAATCTGTATTTTCATTGAACATTTTATGTGTAaa
gi|2 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAAC--------T----GCACT-------GATATTGGTATGGCTGTGTCACTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCTTAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTATnnnnnnnnnnttttctctctcttaagctgcatatagataaataaaaaagttt
gi|21 : ATTGGTTATCTCTAAAATTCTATACGAAACAGTTTGTCT----GCACT-------GATTTTGATAT-ATTGTGTCAACTGATCA-TTTTTTAAACAAATTTGTATTTTCAATGAACATTTTAAGCGTAGTTTC-------------------------AAGTGGAAAAGGGGC---AAAATAAAAAATAATG-----------TA-ACTGAAA-------TTGCATTGTTATTGTTG
gi|22 : -AAAGTGGCCAAAGGGC---ATAATAAGAAGTAACGTT--TTTTTT-TA-ACTGATACTGAAATTGACATTGTTACTGTTGTGTTTTCAACTG-TTTGGTTt
gi|22 : TTACTGTTG-----TG----TTTT--CAACTGTTTGGTTAATAACGTGTCTGTTTATGTAATGCAAATGTGTGTATCAACCT-GGTGGACTCT-GGCACTTGCCAATCaataacgtgtctgtttatgtaatgcaaatgtgtgtatcaacctggtggactctggcacttgccaatcg
gi|23 : aaagtggccaaagggcataataagaagtaacgtttttttttaactgatactgaaattgacattgTTTACAGCTGAATATTTATCACGTGTGTAT-CAATAAACACAG--TTTCATTAGCTAAACAAACTGACACAGTGTTGACA-TT-TTCAAACACTTAAAACGTTTTACTCATAGGAA--T----A-AA--GAAA-AACGTATTGCATTTTAAAGAAAGTAAAGTTTC---g
gi|3 : ttaATACTCAGCAAAAAA-AGGA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTCTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAACGGGT---ATAATCAAAAATAACGTT--TT---T-CA-ACTGAAACTGAAATTTGCATTGTTATTATTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--TAA-TGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGAATCTGCCT-GTTGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGAAACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC----TTTTTTGTTCAGTATat
gi|4 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTAGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTTATAA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATAAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTT-AA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATTATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAT-AAGTTATTGAACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTa
gi|5 : TATACTCAGCAAAAAA-TGAA----CATTACTCTCCATAAACTGGTCATTTTCAAAATCCTGTTTGAAACA------CT----ACACT-------GACATTGGTATGGCTGTTTCAGTTGATCA-TTTTGT-TACAAATCTGTACTT-CATTGGACATTTGAAATGTAGTTTTGT----ACCCCTTACTTAATGAT-AAAGTGGACAA----------------AAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTATAATTGTTGT-TTTATAA--G-TTTGTTTTCTAA--CTAATTTTAGTGAGGCATAGTGGTG-AAA--CAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACACAATTA-TGTTGGTTTTTT----TTTT--CAATTGTTTGATTAACAACATTTATGTGTATGTAATGCACATTTGTGTATGTACCTCGGTAGATTCC-TGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAAAA-AACTTTTCATAATTCAATCAGACTGACGGAAGACTGACA-TG-TTTTG----TT--AACATCTAAGTTATA--AA--TGTAGA-AATTAAAA-AAGTAATTCCACTTTAAACAAAGTAAAGTTTCTTTTTTTTTTACTCAGTAT
gi|6 : TATACTCAGCAAAA-A-AGAA---ACTTTACTCTCCGTGAATTGGTTATTTTCAAAATCATGTTTGAAACA------CT----GCACT-------GACATTAGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGGAGTGTAGTTTTGT----ACCCATAACTTAATGAT-AAAATGGACAAGGGGT---GTAAACAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-AAAGACTAATATTAGTGAGGCACAGTTGTG-AAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCAGAATTA-TGTTG-----TT----TTTTTGCAATTGTTTGATTAACA---TTTCTGTTTATGTTATGCATATTTGTGTATCTACCT-GGTGGACTCT-GGCACGTGCAAATCATGCAAAACAGGA---TTTTACAGCTGGGTTATGATCACATGTGTTTAAAAAAAACA-AG-TTTTCATAATTCAAACAGACTGGTACACTACCAACA-TTGTTTTA----TT--AACATCTTAGTTATA--AA--TGTAGA-AATT-AAA-AAGTTATTGCACTTTAAACA---------------TTTTTTTGGTCAGTAa
gi|7 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTATGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTTTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTTATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TGTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-Ga
gi|7 : TCCTCAAAATTA-TATTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTAGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGTTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTCAAATTTC---TTTTTTTACTCAGTAaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagttaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtcaaatttctttttttactcagta
gi|8 : atatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctatgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtttagttttgtacccataaattaatgataaagtggacaaggggtgttatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgctgttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagCACAAAATAA-TGTTG-----TTGTTTTTTT--CAATTGTTTGATAAACAACATTTCTGTTTATGTTATACTTGTTTGTGTATCTATCT-GGTGGACGCC-GGCACGTGCAAATCAT-------------TTGTTACAGCTCGATGATTATCACTTGTGTTT-AAATAAACA-AG-TTTTTATAATTCAAACAAACTGAGGTAATAACAACGTTT-TTTTA----TT--AACATCTAAGTTATA--AC--TGTAGA-AATTAACA-AAGTTAT-----TTTAAACAGAGTAAAGTTTCT--TTTTTTTGCTCAGTA
gi|9 : cagatgtgcctcatccctttaactaatattaatgaaacaagcaagtcagtcggacagtaggaattacaaatttattctttatttattaagggtaattcgattgacaaagtcaatcttcattgaggcccactttaaaccagtacatcattaaagaaggaTATACTCAACCCAAAACAGAA---ACAATGCTCTACATCAATTGATTATTTTCAAATTTATTTTCGAAACA------ATTGATGTAAT-------GATATCGGTATGGATGTGTTAGATGACCA-TTTTTA-AAATAATCTGCTTTTTCATTGAACAGTTTAAGTAAGGTTTT-T----ATCCGTTAATGAATCAA-AAAGTGGAAAAGAGGC---ATAATGAAAAATAATGTT--TT---TGTGCACTAAAACTGAAACTTGTATAGTTATTGTTGA--GTTCAA--G-ATTA-TTT-TAAGACTCACATTAGTGAAACATTGTTGTT-AAA-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): CACGATTGCCTTATGGCTATTTAAATTAAATATATATTCAAATACGATCAAGTTAATCTTCACAACATACAAATTGCTAATTAATTTAGTAAAGTTTTATTTATAAAGGATGACTCAATTGACAAAGCCAACTCTCATTGAGGTCATCTCAAAACAGGTTCATCATAATACAAAGAATATAAAAT
Unaligned ( gi|24 ): ATTCAGGTTTTTTTTATTTTGTGAGAGTGATTCAAATGACAAAGCCAATTTTCATTGAGGCCCTCTTTAACA
Unaligned ( gi|25 ): TCTTTATTTATAGAGCGTGACTCAAGTGACAAAGTCAATCGTCATAGAAACCCTCTAAACAT
Unaligned ( gi|26 ): AAAGAAAGTATTGCGGAGCTAAAAGTACTAATACTCAATACCATTTTTGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 1 1111
lowQualScore : 2 555 777777 5555 1 8888888 0 5 0 2 1 5555 1 0 2 444 33 444 2 2 1 3 1 77 3 4 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 4 44444 7777 44 3 1 3 44 55 0 3 3 3 0 6 3 7777 44 6 44 44 5 3 3 0 0000
lowQualScore : . ... ...... .... . ....... . . . . . .... . . . ... .. ... . . . . . .. . . . ................................................................................................................. . . . ..... .... .. . . . .. .. . . . . . . . .... .. . .. .. . . . . ....
lowQualScore : 9 000 222222 3333 9 1111111 4 0 2 5 0 7777 9 2 5 444 44 444 5 5 1 1 0 99 3 4 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 0 0 00000 7777 66 5 2 3 00 00 1 3 3 3 7 7 3 1111 66 7 66 66 8 3 3 4 8888
consensus : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
Reference ( family-3303 ) : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
gi|1 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ATCCATAAATAAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--T-TGTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTGT----TT----TTTT--CAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGTGTATCTACCT-GGTTGACTCT-GACATGTGCAAATCATGCAAAACAGCA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACT-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
gi|10 : CGTAATTA-TGATG-----TG----ATTT--CAATTGTTTAGTTAATAACGTGTCTGTTTAAGTAATGGAAATTTGTGTATCTACCT-GGTGGACTCTTGACACGTGCAAAACAT------C------TTTTTACAGCTGGATTATTAACATGCGTATTT-AAATAAACA-AG-ATTCCACTAGTCAAACAGACTGATGCAAAACCAACA-TT-TTTTA----CT--TATATCTAA-GT-TA--AACTTGTAGA-AA-TAAAA-AAGTTATTGAACTTTTAAGAGAGTGAAATTTC---TTTTTTTGCTGAGTa
gi|11 : agtgctgcatcattgtgaaaATGAATCGATTATTTTCAAAAGTCTGTTCAAAACA------C------CATTATGATATGATACTGGTATGGATGTGACAGTTGGTCA-TTCATC-AACAGATCCTTATTTTCATTGCACATTTGAAGTGTAGTTTTTG----GCCAGTCAATTAACAAT-AAAGCGGACAAAGGGC---AGCATCAAA---AACATT--TT---T-CA-ACTGAAATTGAAATGTGCATTGTTATTATTGC-TGCTCAA--ATTTTATTTT-TAAGATTATCATTAGTGACGCATCGGTGTGTAAA-
gi|12 : ATACTCAGCAAAAAA-AGAAGAAACTTTACTCTCCATAAATTTGTTATTTCCAAAACTCTGTTCGAAACA------CT----GCAAT-------GATAT-------------------GGTCA-TTTTAT-A-CAAATCTTTATTTCCATTGAATATTTTTAGTGTATTTTTGT----ACCCATAAATTAACGAT-TAAGTGGACAAGGGGC---ATAATCAAAAATAATGTT--TT---G-TA-ACTGAAACCGAAA-TTGCATTGTTATTGTTCC-TGTTGAAG-G-TTTGATT
gi|13 : TACTTAG-AAAAAT-TGAA---ACGTTGCTTTCCATCAATTGATAATTTTCAAACTTACGTTTGAAACA------CT----GCAAT-------GATAGTGATATTGTTGTATCAGATTATCA-TTTTAT-AACAAATATGTATATTCATTAAACATTTTAAGTGCAGTTTTGTACCGACCCGTAAATTAACGATAAAAGTAGATAAGGGAC---ATAATCAAAAATAATGTTTGTT---T-TA-ACTAAAACTGAAATTTGCATTTCTATTGTTGC-TGCTAAA--G-Tagctcacctgagctaataata
gi|14 : T----TTTT--CAATTGTTTGATTAACAACCTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCTTAATTCAAACAGACTGACACAATACCAACATTT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGAACTTTAAACAGAGTAAa
gi|15 : TATACTCAGCAAAAAA-TGAA---ACTTTACTCTCCATAAATTGGTGATTTTAAACATTCTGTTCCAAACT------CT----ACAAT-------GATATTGATATGTTTGTGTCAGCTGATCATTTTTTT-AACAAATCTGTGTTTCCATTGAGCGTTTTATGTGTAGTTTTGT-----CCTGTAAATTAACAAT-AAAATAAACAAGGGGC---GTAATCAAAAATAATGTT--TT---T-TA-ACTGAAACT-AAATTTGCAGTGTTTTTGTTG
gi|16 : --CGATTGTTTGATTAATAACGTGTCTGATTAGATAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCACGTGCCAATCATGCAAAACAAGGTTTTTTTACAGCCGGATGATCACCACTTG-----------------------------TCAAACATACTGACGTTATACTAACA-TT-TTATA----CA--TACAACTAAGTTATT--CA--TGT--ATAATTAAAACAAG-TATTGAACTTTAAAGAGAGTAAAGTTTC----TTTTTTGCTGAGTATgtgc
gi|17 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCAAAAATTTGTTATTT-AAAAATTCTGTTCAAAACA------CT----GCAAT-------GATATTGATATGGTTGTGAAAACTGATTT-TTTTTT-ATCAAAGCTGTATTTTCTTTGAACATTTTAAGTGTAATTTTGT----ACCTGTAAATTAACGAT-AAAGTGGACAAGAGGCATAGTAATAAATAGTAATGTT--TT---G-TA-ACTGAAACTGAAA-TTGCATTa
gi|18 : ACATTCAGTAACAAA-A-------CTTTACTCTTCATAAATTGGTTGTTTCCAAAAATATATTTGAAACA------CT----GCAAT-------GATATTGATATTGTTGTGTCAACTAATCAGTTTTGT-AAAATATCTGTATTTTAATTGAATATTTT-AGTGTAGTCTTGT----ACCAATAAATTAACGAT-AACGTGAATAAGGCGC---ATAATC-AAAATAATGTG--TT---T-TA-ACTGAAACT---------ATTATTGTTGCTGC-T
gi|19 : TATACTCAGCAAAA-A-AGAA---ACATTACTCTCCATAAATTGATTATTTTCAAAATTCTTTTCGAAACA------CT----GCAAT-------GATATTGATATGGCTGTGTCAGCTGATCA--TTTTT-AACAAATCTGTATTTTCATTGAACATTTTATGTGTAaa
gi|2 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAAC--------T----GCACT-------GATATTGGTATGGCTGTGTCACTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCTTAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTATnnnnnnnnnnttttctctctcttaagctgcatatagataaataaaaaagttt
gi|21 : ATTGGTTATCTCTAAAATTCTATACGAAACAGTTTGTCT----GCACT-------GATTTTGATAT-ATTGTGTCAACTGATCA-TTTTTTAAACAAATTTGTATTTTCAATGAACATTTTAAGCGTAGTTTC-------------------------AAGTGGAAAAGGGGC---AAAATAAAAAATAATG-----------TA-ACTGAAA-------TTGCATTGTTATTGTTG
gi|22 : -AAAGTGGCCAAAGGGC---ATAATAAGAAGTAACGTT--TTTTTT-TA-ACTGATACTGAAATTGACATTGTTACTGTTGTGTTTTCAACTG-TTTGGTTt
gi|22 : TTACTGTTG-----TG----TTTT--CAACTGTTTGGTTAATAACGTGTCTGTTTATGTAATGCAAATGTGTGTATCAACCT-GGTGGACTCT-GGCACTTGCCAATCaataacgtgtctgtttatgtaatgcaaatgtgtgtatcaacctggtggactctggcacttgccaatcg
gi|23 : aaagtggccaaagggcataataagaagtaacgtttttttttaactgatactgaaattgacattgTTTACAGCTGAATATTTATCACGTGTGTAT-CAATAAACACAG--TTTCATTAGCTAAACAAACTGACACAGTGTTGACA-TT-TTCAAACACTTAAAACGTTTTACTCATAGGAA--T----A-AA--GAAA-AACGTATTGCATTTTAAAGAAAGTAAAGTTTC---g
gi|3 : ttaATACTCAGCAAAAAA-AGGA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTCTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAACGGGT---ATAATCAAAAATAACGTT--TT---T-CA-ACTGAAACTGAAATTTGCATTGTTATTATTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--TAA-TGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGAATCTGCCT-GTTGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGAAACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC----TTTTTTGTTCAGTATat
gi|4 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTAGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTTATAA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATAAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTT-AA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATTATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAT-AAGTTATTGAACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTa
gi|5 : TATACTCAGCAAAAAA-TGAA----CATTACTCTCCATAAACTGGTCATTTTCAAAATCCTGTTTGAAACA------CT----ACACT-------GACATTGGTATGGCTGTTTCAGTTGATCA-TTTTGT-TACAAATCTGTACTT-CATTGGACATTTGAAATGTAGTTTTGT----ACCCCTTACTTAATGAT-AAAGTGGACAA----------------AAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTATAATTGTTGT-TTTATAA--G-TTTGTTTTCTAA--CTAATTTTAGTGAGGCATAGTGGTG-AAA--CAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACACAATTA-TGTTGGTTTTTT----TTTT--CAATTGTTTGATTAACAACATTTATGTGTATGTAATGCACATTTGTGTATGTACCTCGGTAGATTCC-TGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAAAA-AACTTTTCATAATTCAATCAGACTGACGGAAGACTGACA-TG-TTTTG----TT--AACATCTAAGTTATA--AA--TGTAGA-AATTAAAA-AAGTAATTCCACTTTAAACAAAGTAAAGTTTCTTTTTTTTTTACTCAGTAT
gi|6 : TATACTCAGCAAAA-A-AGAA---ACTTTACTCTCCGTGAATTGGTTATTTTCAAAATCATGTTTGAAACA------CT----GCACT-------GACATTAGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGGAGTGTAGTTTTGT----ACCCATAACTTAATGAT-AAAATGGACAAGGGGT---GTAAACAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-AAAGACTAATATTAGTGAGGCACAGTTGTG-AAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCAGAATTA-TGTTG-----TT----TTTTTGCAATTGTTTGATTAACA---TTTCTGTTTATGTTATGCATATTTGTGTATCTACCT-GGTGGACTCT-GGCACGTGCAAATCATGCAAAACAGGA---TTTTACAGCTGGGTTATGATCACATGTGTTTAAAAAAAACA-AG-TTTTCATAATTCAAACAGACTGGTACACTACCAACA-TTGTTTTA----TT--AACATCTTAGTTATA--AA--TGTAGA-AATT-AAA-AAGTTATTGCACTTTAAACA---------------TTTTTTTGGTCAGTAa
gi|7 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTATGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTTTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTTATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TGTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-Ga
gi|7 : TCCTCAAAATTA-TATTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTAGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGTTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTCAAATTTC---TTTTTTTACTCAGTAaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagttaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtcaaatttctttttttactcagta
gi|8 : atatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctatgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtttagttttgtacccataaattaatgataaagtggacaaggggtgttatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgctgttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagCACAAAATAA-TGTTG-----TTGTTTTTTT--CAATTGTTTGATAAACAACATTTCTGTTTATGTTATACTTGTTTGTGTATCTATCT-GGTGGACGCC-GGCACGTGCAAATCAT-------------TTGTTACAGCTCGATGATTATCACTTGTGTTT-AAATAAACA-AG-TTTTTATAATTCAAACAAACTGAGGTAATAACAACGTTT-TTTTA----TT--AACATCTAAGTTATA--AC--TGTAGA-AATTAACA-AAGTTAT-----TTTAAACAGAGTAAAGTTTCT--TTTTTTTGCTCAGTA
gi|9 : cagatgtgcctcatccctttaactaatattaatgaaacaagcaagtcagtcggacagtaggaattacaaatttattctttatttattaagggtaattcgattgacaaagtcaatcttcattgaggcccactttaaaccagtacatcattaaagaaggaTATACTCAACCCAAAACAGAA---ACAATGCTCTACATCAATTGATTATTTTCAAATTTATTTTCGAAACA------ATTGATGTAAT-------GATATCGGTATGGATGTGTTAGATGACCA-TTTTTA-AAATAATCTGCTTTTTCATTGAACAGTTTAAGTAAGGTTTT-T----ATCCGTTAATGAATCAA-AAAGTGGAAAAGAGGC---ATAATGAAAAATAATGTT--TT---TGTGCACTAAAACTGAAACTTGTATAGTTATTGTTGA--GTTCAA--G-ATTA-TTT-TAAGACTCACATTAGTGAAACATTGTTGTT-AAA-
blockSeqs : C GAA GTTTGT TGAT T ATGATAT T A G ACCG G A ATA TG TTT G C T G G CT T C T CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N T C GTTTT GTTT TG G G C TT TT A C C T G ACAC AA G GG CT A T C TTTT
blockSeqs : . . . . A . G . T . A . . . . . . T . G G . . . GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N . . . . C A . C . . . . T . . . C . . T . . TT
blockSeqs : . . . . A . . . T . G . . . . . . T . G . . . . GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N . . . . G G . T . . . . . . . . G . . T . . T
blockSeqs : . . . . A . . . T . G . . . . . . T . T . . . . GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A N . . . . A A . T . . . . . . . . G . . T . . T
blockSeqs : . . . . A . . . T . G . . . . . . T . T . . . . CAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G C . . . . G G . T . . . . . . . . G . . T . . T
blockSeqs : . . . . A . . . T . A . . . . . . T . T . . . . T G . . . . A A . T . . . . . . . . . . . A . . T
blockSeqs : . . . . A . . . T . A . . . . . . T . T . . . . A A . . . . A A . C . . . . . . . . . . . A . . T
blockSeqs : . . . . C . . . G . A . . . . . . T . T . . . . A . . . . A T . C . . . . . . . . . . . T . . .
blockSeqs : . . . . C . . . T . A . . . . . . T . T . . . . . . A T . T . . . . . . . . . . . A . . .
blockSeqs : . . . . C . . . G . C . . . . . . T . G . . . . A A . T . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . G . A . . . . . . C . G . . . . T . C . . . . . . . . . . . . .
blockSeqs : . . . . C . . . G . A . . . . . . . .
blockSeqs : . . . . C . . . G . G . . . . . . .
blockSeqs : . . C . . . G . . . . . . . . .
blockSeqs : . . A . . . T . . . . . . .
blockSeqCons : *****
originalCons : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
finalCons : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): CACGATTGCCTTATGGCTATTTAAATTAAATATATATTCAAATACGATCAAGTTAATCTTCACAACATACAAATTGCTAATTAATTTAGTAAAGTTTTATTTATAAAGGATGACTCAATTGACAAAGCCAACTCTCATTGAGGTCATCTCAAAACAGGTTCATCATAATACAAAGAATATAAAAT
Unaligned ( gi|24 ): ATTCAGGTTTTTTTTATTTTGTGAGAGTGATTCAAATGACAAAGCCAATTTTCATTGAGGCCCTCTTTAACA
Unaligned ( gi|25 ): TCTTTATTTATAGAGCGTGACTCAAGTGACAAAGTCAATCGTCATAGAAACCCTCTAAACAT
Unaligned ( gi|26 ): AAAGAAAGTATTGCGGAGCTAAAAGTACTAATACTCAATACCATTTTTGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11111 1 1111
lowQualScore : 2 555 777777 5555 1 8888888 0 5 0 2 1 5555 1 0 2 444 33 444 2 2 1 3 1 77 3 4 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 4 44444 7777 44 3 1 3 44 55 0 3 3 3 0 6 3 7777 44 6 44 44 5 3 3 0 0000
lowQualScore : . ... ...... .... . ....... . . . . . .... . . . ... .. ... . . . . . .. . . . ................................................................................................................. . . . ..... .... .. . . . .. .. . . . . . . . .... .. . .. .. . . . . ....
lowQualScore : 9 000 222222 3333 9 1111111 4 0 2 5 0 7777 9 2 5 444 44 444 5 5 1 1 0 99 3 4 4 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 0 0 00000 7777 66 5 2 3 00 00 1 3 3 3 7 7 3 1111 66 7 66 66 8 3 3 4 8888
consensus : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
Reference ( family-3303 ) : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTCGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTNAAGTGTAGTTTTGT----ACCCGTAAATTAACGAT-AAAGTGGACAAGGGGC---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCANAATTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACGTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACGCAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
gi|1 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ATCCATAAATAAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--T-TGTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTGT----TT----TTTT--CAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGTGTATCTACCT-GGTTGACTCT-GACATGTGCAAATCATGCAAAACAGCA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACT-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTAT
gi|10 : CGTAATTA-TGATG-----TG----ATTT--CAATTGTTTAGTTAATAACGTGTCTGTTTAAGTAATGGAAATTTGTGTATCTACCT-GGTGGACTCTTGACACGTGCAAAACAT------C------TTTTTACAGCTGGATTATTAACATGCGTATTT-AAATAAACA-AG-ATTCCACTAGTCAAACAGACTGATGCAAAACCAACA-TT-TTTTA----CT--TATATCTAA-GT-TA--AACTTGTAGA-AA-TAAAA-AAGTTATTGAACTTTTAAGAGAGTGAAATTTC---TTTTTTTGCTGAGTa
gi|11 : agtgctgcatcattgtgaaaATGAATCGATTATTTTCAAAAGTCTGTTCAAAACA------C------CATTATGATATGATACTGGTATGGATGTGACAGTTGGTCA-TTCATC-AACAGATCCTTATTTTCATTGCACATTTGAAGTGTAGTTTTTG----GCCAGTCAATTAACAAT-AAAGCGGACAAAGGGC---AGCATCAAA---AACATT--TT---T-CA-ACTGAAATTGAAATGTGCATTGTTATTATTGC-TGCTCAA--ATTTTATTTT-TAAGATTATCATTAGTGACGCATCGGTGTGTAAA-
gi|12 : ATACTCAGCAAAAAA-AGAAGAAACTTTACTCTCCATAAATTTGTTATTTCCAAAACTCTGTTCGAAACA------CT----GCAAT-------GATAT-------------------GGTCA-TTTTAT-A-CAAATCTTTATTTCCATTGAATATTTTTAGTGTATTTTTGT----ACCCATAAATTAACGAT-TAAGTGGACAAGGGGC---ATAATCAAAAATAATGTT--TT---G-TA-ACTGAAACCGAAA-TTGCATTGTTATTGTTCC-TGTTGAAG-G-TTTGATT
gi|13 : TACTTAG-AAAAAT-TGAA---ACGTTGCTTTCCATCAATTGATAATTTTCAAACTTACGTTTGAAACA------CT----GCAAT-------GATAGTGATATTGTTGTATCAGATTATCA-TTTTAT-AACAAATATGTATATTCATTAAACATTTTAAGTGCAGTTTTGTACCGACCCGTAAATTAACGATAAAAGTAGATAAGGGAC---ATAATCAAAAATAATGTTTGTT---T-TA-ACTAAAACTGAAATTTGCATTTCTATTGTTGC-TGCTAAA--G-Tagctcacctgagctaataata
gi|14 : T----TTTT--CAATTGTTTGATTAACAACCTATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCTTAATTCAAACAGACTGACACAATACCAACATTT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGAACTTTAAACAGAGTAAa
gi|15 : TATACTCAGCAAAAAA-TGAA---ACTTTACTCTCCATAAATTGGTGATTTTAAACATTCTGTTCCAAACT------CT----ACAAT-------GATATTGATATGTTTGTGTCAGCTGATCATTTTTTT-AACAAATCTGTGTTTCCATTGAGCGTTTTATGTGTAGTTTTGT-----CCTGTAAATTAACAAT-AAAATAAACAAGGGGC---GTAATCAAAAATAATGTT--TT---T-TA-ACTGAAACT-AAATTTGCAGTGTTTTTGTTG
gi|16 : --CGATTGTTTGATTAATAACGTGTCTGATTAGATAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCACGTGCCAATCATGCAAAACAAGGTTTTTTTACAGCCGGATGATCACCACTTG-----------------------------TCAAACATACTGACGTTATACTAACA-TT-TTATA----CA--TACAACTAAGTTATT--CA--TGT--ATAATTAAAACAAG-TATTGAACTTTAAAGAGAGTAAAGTTTC----TTTTTTGCTGAGTATgtgc
gi|17 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCAAAAATTTGTTATTT-AAAAATTCTGTTCAAAACA------CT----GCAAT-------GATATTGATATGGTTGTGAAAACTGATTT-TTTTTT-ATCAAAGCTGTATTTTCTTTGAACATTTTAAGTGTAATTTTGT----ACCTGTAAATTAACGAT-AAAGTGGACAAGAGGCATAGTAATAAATAGTAATGTT--TT---G-TA-ACTGAAACTGAAA-TTGCATTa
gi|18 : ACATTCAGTAACAAA-A-------CTTTACTCTTCATAAATTGGTTGTTTCCAAAAATATATTTGAAACA------CT----GCAAT-------GATATTGATATTGTTGTGTCAACTAATCAGTTTTGT-AAAATATCTGTATTTTAATTGAATATTTT-AGTGTAGTCTTGT----ACCAATAAATTAACGAT-AACGTGAATAAGGCGC---ATAATC-AAAATAATGTG--TT---T-TA-ACTGAAACT---------ATTATTGTTGCTGC-T
gi|19 : TATACTCAGCAAAA-A-AGAA---ACATTACTCTCCATAAATTGATTATTTTCAAAATTCTTTTCGAAACA------CT----GCAAT-------GATATTGATATGGCTGTGTCAGCTGATCA--TTTTT-AACAAATCTGTATTTTCATTGAACATTTTATGTGTAaa
gi|2 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAAC--------T----GCACT-------GATATTGGTATGGCTGTGTCACTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCTTAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA-TGTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GATGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTATnnnnnnnnnnttttctctctcttaagctgcatatagataaataaaaaagttt
gi|21 : ATTGGTTATCTCTAAAATTCTATACGAAACAGTTTGTCT----GCACT-------GATTTTGATAT-ATTGTGTCAACTGATCA-TTTTTTAAACAAATTTGTATTTTCAATGAACATTTTAAGCGTAGTTTC-------------------------AAGTGGAAAAGGGGC---AAAATAAAAAATAATG-----------TA-ACTGAAA-------TTGCATTGTTATTGTTG
gi|22 : -AAAGTGGCCAAAGGGC---ATAATAAGAAGTAACGTT--TTTTTT-TA-ACTGATACTGAAATTGACATTGTTACTGTTGTGTTTTCAACTG-TTTGGTTt
gi|22 : TTACTGTTG-----TG----TTTT--CAACTGTTTGGTTAATAACGTGTCTGTTTATGTAATGCAAATGTGTGTATCAACCT-GGTGGACTCT-GGCACTTGCCAATCaataacgtgtctgtttatgtaatgcaaatgtgtgtatcaacctggtggactctggcacttgccaatcg
gi|23 : aaagtggccaaagggcataataagaagtaacgtttttttttaactgatactgaaattgacattgTTTACAGCTGAATATTTATCACGTGTGTAT-CAATAAACACAG--TTTCATTAGCTAAACAAACTGACACAGTGTTGACA-TT-TTCAAACACTTAAAACGTTTTACTCATAGGAA--T----A-AA--GAAA-AACGTATTGCATTTTAAAGAAAGTAAAGTTTC---g
gi|3 : ttaATACTCAGCAAAAAA-AGGA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTCTGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAACGGGT---ATAATCAAAAATAACGTT--TT---T-CA-ACTGAAACTGAAATTTGCATTGTTATTATTGC-TTTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--TAA-TGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGAATCTGCCT-GTTGGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGAAACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTAAAGTTTC----TTTTTTGTTCAGTATat
gi|4 : TATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTAGAAACA------CT----GCACT-------GATATTGGTATGGCTGTGTCAGTTTATAA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTAATAAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTT-AA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNTTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGTGTATCTACCT-GGTGGACTCC-GGCATGTGCAAATTATGCAAAACAGGA--TTTTTACAGCTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAT-AAGTTATTGAACTTTAAACAGAGTAAAGTTTC---TTTTTTTGCTCAGTa
gi|5 : TATACTCAGCAAAAAA-TGAA----CATTACTCTCCATAAACTGGTCATTTTCAAAATCCTGTTTGAAACA------CT----ACACT-------GACATTGGTATGGCTGTTTCAGTTGATCA-TTTTGT-TACAAATCTGTACTT-CATTGGACATTTGAAATGTAGTTTTGT----ACCCCTTACTTAATGAT-AAAGTGGACAA----------------AAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTATAATTGTTGT-TTTATAA--G-TTTGTTTTCTAA--CTAATTTTAGTGAGGCATAGTGGTG-AAA--CAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACACAATTA-TGTTGGTTTTTT----TTTT--CAATTGTTTGATTAACAACATTTATGTGTATGTAATGCACATTTGTGTATGTACCTCGGTAGATTCC-TGCACGTGCAAATCATGCAAAACAGGA--TTTTTACAGCTGGGTTATTATCACTTGTGTTT-AAATAAAAA-AACTTTTCATAATTCAATCAGACTGACGGAAGACTGACA-TG-TTTTG----TT--AACATCTAAGTTATA--AA--TGTAGA-AATTAAAA-AAGTAATTCCACTTTAAACAAAGTAAAGTTTCTTTTTTTTTTACTCAGTAT
gi|6 : TATACTCAGCAAAA-A-AGAA---ACTTTACTCTCCGTGAATTGGTTATTTTCAAAATCATGTTTGAAACA------CT----GCACT-------GACATTAGTATGGCTGTGTCAGTTGATCA-TTTTGT-AACAAATCTGTATTTTCATTGGACATTTGGAGTGTAGTTTTGT----ACCCATAACTTAATGAT-AAAATGGACAAGGGGT---GTAAACAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TTTTCAA--G-TTTGTTTT-AAAGACTAATATTAGTGAGGCACAGTTGTG-AAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCAGAATTA-TGTTG-----TT----TTTTTGCAATTGTTTGATTAACA---TTTCTGTTTATGTTATGCATATTTGTGTATCTACCT-GGTGGACTCT-GGCACGTGCAAATCATGCAAAACAGGA---TTTTACAGCTGGGTTATGATCACATGTGTTTAAAAAAAACA-AG-TTTTCATAATTCAAACAGACTGGTACACTACCAACA-TTGTTTTA----TT--AACATCTTAGTTATA--AA--TGTAGA-AATT-AAA-AAGTTATTGCACTTTAAACA---------------TTTTTTTGGTCAGTAa
gi|7 : ATATACTCAGCAAAAAA-AGAA---ACTTTACTCTCCATGAATTGGTTATTTTCAAAATCCTGTTTGAAACA------CT----GCACT-------GATATTGGTATGGCTATGTCAGTTGATCA-TTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTTTAGTTTTGT----ACCCATAAATTAATGAT-AAAGTGGACAAGGGGT---GTTATCAAAAATAACGTT--TT---T-TA-ACTGAAACTGAAATTTGCATTGTTATTGTTGC-TGTTCAA--G-TTTGTTTT-TAAGACTAATATTAGTGAGGCATAGTTGTG-AAA-Ga
gi|7 : TCCTCAAAATTA-TATTG-----TT----TTTT--CAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGTGTATCTACCT-GGTAGACTCT-GGCATGTGCAAATCATGCAAAACAGGA--TTTTTACAGTTAGGTTATTATCATTTGTGTTT-AAATAAACA-AG-TTTTCATAATTCAAACAGACTGACACAATACCGACA-TT-TTTTA----TT--AACATCTTA-TTATA--AA--TGTTGA-AATTAAAA-AAGTTATTGCACTTTAAACAGAGTCAAATTTC---TTTTTTTACTCAGTAaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagtcctcaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagttaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgcactttaaacagagtcaaatttctttttttactcagta
gi|8 : atatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctatgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtttagttttgtacccataaattaatgataaagtggacaaggggtgttatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgctgttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaagaattacaagtttaatctttatttataaagggtgacttgattgacaaagcaaacctcttaaaacaagtacatcatattacaaagCACAAAATAA-TGTTG-----TTGTTTTTTT--CAATTGTTTGATAAACAACATTTCTGTTTATGTTATACTTGTTTGTGTATCTATCT-GGTGGACGCC-GGCACGTGCAAATCAT-------------TTGTTACAGCTCGATGATTATCACTTGTGTTT-AAATAAACA-AG-TTTTTATAATTCAAACAAACTGAGGTAATAACAACGTTT-TTTTA----TT--AACATCTAAGTTATA--AC--TGTAGA-AATTAACA-AAGTTAT-----TTTAAACAGAGTAAAGTTTCT--TTTTTTTGCTCAGTA
gi|9 : cagatgtgcctcatccctttaactaatattaatgaaacaagcaagtcagtcggacagtaggaattacaaatttattctttatttattaagggtaattcgattgacaaagtcaatcttcattgaggcccactttaaaccagtacatcattaaagaaggaTATACTCAACCCAAAACAGAA---ACAATGCTCTACATCAATTGATTATTTTCAAATTTATTTTCGAAACA------ATTGATGTAAT-------GATATCGGTATGGATGTGTTAGATGACCA-TTTTTA-AAATAATCTGCTTTTTCATTGAACAGTTTAAGTAAGGTTTT-T----ATCCGTTAATGAATCAA-AAAGTGGAAAAGAGGC---ATAATGAAAAATAATGTT--TT---TGTGCACTAAAACTGAAACTTGTATAGTTATTGTTGA--GTTCAA--G-ATTA-TTT-TAAGACTCACATTAGTGAAACATTGTTGTT-AAA-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): CACGATTGCCTTATGGCTATTTAAATTAAATATATATTCAAATACGATCAAGTTAATCTTCACAACATACAAATTGCTAATTAATTTAGTAAAGTTTTATTTATAAAGGATGACTCAATTGACAAAGCCAACTCTCATTGAGGTCATCTCAAAACAGGTTCATCATAATACAAAGAATATAAAAT
Unaligned ( gi|24 ): ATTCAGGTTTTTTTTATTTTGTGAGAGTGATTCAAATGACAAAGCCAATTTTCATTGAGGCCCTCTTTAACA
Unaligned ( gi|25 ): TCTTTATTTATAGAGCGTGACTCAAGTGACAAAGTCAATCGTCATAGAAACCCTCTAAACAT
Unaligned ( gi|26 ): AAAGAAAGTATTGCGGAGCTAAAAGTACTAATACTCAATACCATTTTTGTACA