lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222 2222222222 11111111 111111 1111111 1 1 111 22222222 22 11111 2222222222222 11 33333 2222222222222 33 1 1 222222222222222222222222222222222222222222222222222222222222222222222222 111 1 2222 444444444 111 222222222 2222222 111 8888 4
lowQualScore : 1111111111 7 1111111111 3 1 33333333 3 3 0 666 333333 55 3 3 55 4444444 9999 66 3 2 3 111 00000000 3 3 7 44 1 55 4 00000 66 9999 4 0000000000000 99 777 1 8 4 0 22 22222 7 7 5 4444444444444 0 8 1 00 5 1 0 77 77 2 5 5 666666666666666666666666666666666666666666666666666666666666666666666666 5 000 8 2 1 5 0 88 4 0 1 1111 6 555555555 444 3 777777777 6666666 3 999 4 6 6 999 5555 6 0 6 6
lowQualScore : .......... . .......... . . ........ . . . ... ...... .. . . .. ....... .... .. . . . ... ........ . . . .. . .. . ..... .. .... . ............. .. ... . . . . .. ..... . . . ............. . . . .. . . . .. .. . . . ........................................................................ . ... . . . . . .. . . . .... . ......... ... . ......... ....... . ... . . . ... .... . . . .
lowQualScore : 9999999999 1 8888888888 0 4 22222222 6 6 5 444 222222 00 5 6 55 4444444 4444 11 0 0 4 000 00000000 6 6 3 55 2 00 5 00000 33 7777 4 2222222222222 99 888 9 9 7 7 44 99999 0 9 0 3333333333333 3 6 4 33 1 4 9 99 77 1 7 7 444444444444444444444444444444444444444444444444444444444444444444444444 7 000 0 8 8 0 8 55 2 2 2 2222 0 555555555 000 8 888888888 0000000 2 000 6 0 0 000 0000 0 0 0 0
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------A-A-TCA---TC-----A--AATTACA-TGC--AATTT-------AAAC----AA--GTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTG--AAAT-----TTAAACTTTAA-TAATAC--A-AATGT----ACGT-TGAGACAG-NTTT---AACACAT-TGTAATGAATAATAA---GTTAAATTTAAACTTTAACTTGTATA-AATG-TTCATGTT---TATAATACAGTCTTAACACACTCTGTCATGAACAGT--GTTAAATCTAGNC-TTTA-T------AT---C-A------TGGT--------NA-A-----AA-------------AT---------G----T-AT---AAAC-AACAATAATCTGTCGATATCAGATA----CGCAATTCTAATACATACTAC--TGAAA---ATACACATACTATTATA-------GTG-------TAGANGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCCTTTTTTT--TTTTCAAATATGTA-CATGGA
Reference ( gi|3 ) : ATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------A-A-TTA---TA-----A--AATTACA-TGC--AATTT-------AAAC----AA--GTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTG--AAGT-----TTAAACTTTAA-TAATGC--A-AATGT----ATAT-TGGGACAG-GTTT---AACACAT-TGTAATGAGTAATACA--GTTGAATTTAAACTTTAACTTGTATA-AATG-ATCATTTT---TATAATACAGCCTTAACACATTTTGTCCTGAGCAGT--GTTAAACCTAGTC-TTTA-T------AT---C-A------TGGT--------TA-G-----AA-------------AT---------G----T-AT---AAAC-AACAGTTATCTGTCGGTGTCAGATA----CGCAGTTCTAATACATAGTGC--TGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT--CTTT----TGTGTAGCGTGAA
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------A-A-TCA---TC-----A--AATTTCA-TCC--AATTT-------AGAC----AA--TTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAA--GAAT-----TTAAACTTTAA-TAAAAC--ATTTTGT----AACT-TGAGACAG-ATTT---AACACGT-TG-AATGAACAATAAT--GTTATATTCAAACTTTAACTTGTAT--GATGTAT-ATGTT---TATAATACAGTCTTAACAC-CTCTGTAATGAAC-----GTTAAATCTAATA-TTTG-T------AT---CTA------TGATAAAAAACGTA-GTTCTAGA-------------AT---------A----T-AT---CAAC-AACAATAATCTGTCGATATTAGATA----CACCATTCTA
gi|1 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaatATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------A-A-TTAACATA-----A-----TATA-TGC--AATAT-------AAGA----AA--GCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACAT--GCAAGATGTCAGAT-----TTAA-CTTTAAATAGCG---G-AATTT----A-AT-TTA-AC---GTTTTTAAATCCTT-TTTCATGA---ATACAATGTCAAATTTAAACTTTTA-----ATA-AATG-A--AATATAAATGTTATGCAGTCTTTACAC-TTTAATGGTGA--AATTAGTTTAATTTAGAC-TTAAAT------ATTGGC-AAAAATGTGGT--------TCTG-----TA-------------AT---------G----T-AT---AAACCAACAACAATATTTCACTTTCAGTTAAAAACGCAAATCTTATCCAT--TCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGA-A-TTA---TA-----A--ACATACA-TGC--CTTTTGTATCACAAAC----AA--ATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTA--AAGatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|17 : aatgattttacagtttttttgttgattggtgaataatatatataattatACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------A-ACTTA---TAGTCATA--AA--ACA-TAC--Aa
gi|6 : ttTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------A-G-TCA---CC-----A--AATTAAA-TGT--AATTT-------AAAT----AA--ATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTG--AAAT-----TTAGACTTTAA-TAATAC--A-AATGT----GCAT-TGAGACAG-CTTT---AACACAC-TATAATGTATAAT--A--ACTAAATTTAA
gi|8 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatTATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------G-A-TCA---TC-----A--AATTACA-TTC--AATTT-------AAAC----AA--GTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TG--AAAT-----TTAAACTTTAG-TAATAC--A-AATAT----AATT-TAAGACAG-ATTT---AACACAT-TATGATG---AATAC-----------TAAACGTTGACTTGTATA-
gi|19 : gtcgtatacaagtTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------A-A-TCG---TC-----A--AATAACA-T
gi|16 : cT----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------G-G-ACA---TA-----A--ATCTAAA--GC--AGATT-------AAAC----AA--TTAAACAATGGCAttattttg
gi|13 : AAGGTCATAGCTCCATCAGCATAC--------A-A-TCA---TC-----A--AATTATA-TGC--AGTTT-------AAAC----AA--GTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTG--AAATTTAAATTAAACTTTTA-TAATAC--A-AATG
gi|15 : AGACCATAGGCCCATCAGTATAC--------A-A-TCA---TC-----A--AAGTACA-TGC--TATCT-------AAAC----AA--GTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTG--AAAT-----T
gi|5 : AC--------ACA-TTG---TA-----ATCAATAACAATGTTAAATTT-------AAACTTCAAATTGTAGACATTTTCA-TGTCATACAGTCTTA--CAC----AT--C-T-G-TCATGAATAGTGTT--AAAT-----TTAAACTTCAA--ATTGTAGA-AATTT----TCATGTCATACAG-TCTT----ACACCTCTGTCATGAATAGT-----GTTAAATACAGACTTTA
gi|9 : tacagatgttcatttgagagagttctaTCTG---TAA----GT--T-C-A-TTAGGAATAATTTA--AAAT-----TTGAACTTTAA-TAATAC--A-AATGT----ATAT-TGAGACAG-GTTT---AACACAT-TTTAATGAATAAAAAC--GATAAATTTGAACTCTAACTTGTATATAGTT--TCATGTT---TATAATACA-TCTAAACACA-TCTGTCCCGAACAGT--GTTAAATCTAGTC-TTTA-T-------T---T-A------T--T--------CA-------AG-------------TT---------G----T-AT---AAccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : ata---TAC----AG--T-C-A-CCA--AATTAAATG--TAAT-----TTAAA--TAAA-TAAT-C--A-ATGGT----ATGG-TTGTACAGTATTT---A-CATAT-T--AATCACGAATAAA--GTGAAATTTAGACTTTAA-TAATACA-AATG-TGCAT--------TGAGACAGCTTTAACACACT
gi|5 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaattatatatctttatttctgatcacacaagaggcagaagacccatcagcaAC----AT--TGT-AATCAATAACAATGTT--AAAT-----TTAAACTTCAA--ATTGT--A-GACATTTTCATGT-CAT-ACAG-TCTT---A-CACATCTGTCATGAATAGT-----GTTAAATTTAAACTTCAAATTGTAGA-AATT-TTCATGTC-------ATACAGTCTTA-CAC-CTCTGTCATGAATAGT--GTTAAATACAGAC-TTTA-CCATTAAAT---C-A------TG-C--------CA-A-----AA-------------ATCGTGGTTTTG----TGATTTGAAAC-AACAATAATCTTTCCACATAAGGTA----TACAATTCTAATAAATACTAC--TAAAATGAATACACATACTATTAAA-------GTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTT--TTataatgtataataactaaatttaa
gi|2 : tacagatgttcatttgagagagttctaacAC-TGAGACTG-ATTT---AACACAT-TGTAATGAATAATAAC--GTTAAATTTAA-CTTTAACTTGAATA-AATG-TTCATGTT---TATAATACAG---------------TCATGAACAGT--GTTAAATATAGAC-TTTA-T------GC---T-A------TAAT--------AA-A-----AA-------------TT---------GCAATT-AT---AAAactttcaaaagcacatatgggtttaaatcggaaataa
gi|14 : TTGTATA-AATG-TTCATTTT---TATAATACAGTCTTAACACA-TCTGTCATGAACAGT--GTTAAGTCTAGTCTTTTA-T------GG---C-A------TGGT--------AA-A-----AATCGTGGTTCTGTCAT---------T----T-AT---ATAC-AACAATAACCTGTacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|11 : TCTGTCATAAACAGG--GTTAAATTCAGTA-TTTA-T------AA---C-A------TAGT---------A-A-----AA-------------ATC--------G----T-G-------------GTTAC--G-CGATGTCAGATA----CGCAATTCTAATAC---------TGAAA---ATACACATACTATTA---------GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTT
gi|2 : caGCAATTATAAAACACACCAC--TGAAA---ATAT------TAATATA-------GTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTCCTTTTTTTTACTTTCAAATATGTA-CATGG
gi|7 : actgagactgatttaacacattgtaatgaataataacgttaaatttaactttaacttgaataaatgttcatgtttataatacagtcatgaacagtgttaaatatagactttatgctataataaaaattC--TGAAA---ATACACATACTATTATA-------GTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTT--TTtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 11 2222 11111 11 222 11 111 22222222222222222222222 888888888888888888888888888888888888888888888888888888888888888 1111 11111 1111 111 2222222 2222222 444 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11 2222 4 4 8 2 11111 5 4 4 4 44 4 4 1 66 4 333 777 777 6 66 77 0 4 111 1 1 4 4 99999999999999999999999 3 1 111111111111111111111111111111111111111111111111111111111111111 5 0 2222 00000 3 5 1 0 4444 6 4 111 1 1111111 3 1111111 1 0 0 888 66 3 4
lowQualScore : .......... .......... . ........ ....... . .. ....... ... .. .... . . . . ..... . . . . .. . . . .. . ... ... ... . .. .. . . ... . . . . ....................... . . ............................................................... . . .... ..... . . . . .... . . ... . ....... . ....... . . . ... .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 000 00 0000 0 0 0 3 11111 0 4 4 4 88 4 4 0 11 4 000 888 888 2 33 66 7 0 000 4 0 0 0 88888888888888888888888 2 0 222222222222222222222222222222222222222222222222222222222222222 0 1 1111 11111 0 7 0 3 2222 7 3 777 7 7777777 5 7777777 0 7 3 888 00 3 0
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTTT---AC--AT----T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTACAT-T-GAGACAGNTTT--AACACAT-TGTAATGAATAATA-ACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-GTCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGGTNAAA------------A-------------AC---------G----T-A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTTT---AC--AT----T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTACGT-T-GAGACAGNTTT--AACACAT-TGTAATGAATAATA-A-GTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-GTCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGGTNAAA------------A-------------AT---------G----T-A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACTACTGAAA---ATACACATACT-------ATTATAGTG-------TAGANGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCCTTTTTTTT---TTTCAAATATGTA-CATGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTTA---AC--ATAC--T-T-A-ACATGCAAGATGTCAGAT-----TT-AACTTTA---AATAGCGG-AATTTA-AT-T-TA-AC-GTTTTTAAATCCTT-TTTCATGAAT-ACA-ATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAATGGTGAA-ATTA--GTTTAATTTAGAC-TTAAA-------T------A-----T---TGGCAAAAATGTGGTTCTGTA-------------AT---------G----T-A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATTC---AC--ATA---T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCT-GTCATAAACAGG---GTTAAATTCAGTA-TT-TA-------T------A-----AC-ATAGTAAAA------------A-------------TC---------G----T-G----G---T---------TA-CG---------------------CGATGTCAG----ATAC-GCAATTCTAATAC-------TGAAA---ATACACATACT-------ATTA--GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTAT---AC--A-------T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-C-A-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCT-GTCATGAACAGT---GTTAAGTCTAGTCTTT-TA-------T------G-----GC-ATGGTAAAA------------ATCGTGGTTCTGTCAT---------T----T-A----T---A---------TA-CAAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTTT---ACTTAT----T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : c-T-GAGACTGATTT--AACACAT-TGTAATGAATAATA-ACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC----------------ATGAACAGT---GTTAAATATAGAC-TT-TA-------T------G-----CT-ATAATAAAA------------A-------------TT---------GCAATT-A----T---A---------AA-ttattttg
gi|2 : acTTAACACATT---GTAATGAATAATAACGTTAAATTTA-AC-TT-TAACTTGAAT------AAATGTTC-ATGTTTATA------------AT------------ACA--------G----TCA----T---G---------AA-CAGTGTTAAATATAGACTTTATGCTATAATAA----AAATTGCAATTATAAAACACACCACTGAAA---ATAT------T-------AATATAGTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTCCTTTTTTTTAC-TTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTTT---AC--AT----T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-C-A-AATGTATAT-T-GGGACAGGTTT--AACACAT-TGTAATGAGTAATACA-GTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTT-GTCCTGAGCAGT---GTTAAACCTAGTC-TT-TA-------T------A-----TC-ATGGTTAGA------------A-------------AT---------G----T-A----T---A---------AA-CAAC----AGTT---A-TCTGT-CGGTGTCAG----ATAC-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCTC---TTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTTT---ACATAT----T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-C-ATTTTGTAACT-T-GAGACAGATTT--AACACGT-TG-AATGAACAATA-ATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCT-GTAATGAAC------GTTAAATCTAATA-TT-TG-------T------A-----TCTATGATAAAA------------A-------------AC---------G----T-AGTTCT---AGAATATATCAA-CAAC----AATA---A-TCTGT-CGATATTAG----ATAC-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaatTA-C-A-GATGTTCAT-TTGAGAGAGTTCT--AACACAT-TGTAATCAATAACA-ATGTTAAATTTAAACTTCAAAT---TG---TAGACATTTTCATGTC----ATACAGTCTT-ACACA-TCT-GTCATGAATAGT---GTTAAATTTAAAC-TT-CA-------A------A-----TT-GTAG
gi|5 : ---AC--AT----TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-G-A-CATTTTCATGT-CATACAGTCTT--A-CACATCTGTCATGAATAGT----GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCT-GTCATGAATAGT---GTTAAATACAGAC-TT-TA-------CCATTAAA-----TC-ATG-CCAAA------------A-------------ATCGTGGTTTTG----TGA----TTTGA---------AA-CAAC----AATA---A-TCTTT-CCACATAAG----GTAT-ACAATTCTAATAAATACTACTAAAATGAATACACATACT-------ATTAAAGTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATTT---AC--ATA---T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-C-A-AATGTGCAT-T-GAGACAGCTTT--AACACAC-TATAATGTATAATA-A--CTAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTAC--ATGTATT-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-C-A-AATATAATT-T-AAGACAGATTT--AACACAT-TATGATGAATA-------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTGT---AA--GT----T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-C-A-AATGTATAT-T-GAGACAGGTTT--AACACAT-TTTAATGAATAAAA-ACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCT-GTCCCGAACAGT---GTTAAATCTAGTC-TT-TA-------T------------TT-AT--TC-AA------------G-------------TT---------G----T-A----T---A---------A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 22222222 11111 11 111 33333333333333333333333 0000000000000000000000000000000000000000000000000000000000 1111 11111 111111 111 2222222 2222222 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11111111 4 4 8 2 11111 5 4 8 6 4 4 1 66 4 55555 777 777 6 66 77 0 4 111 1 1 4 00000000000000000000000 1 2222222222222222222222222222222222222222222222222222222222 5 0 2222 00000 3 5 1 0 666666 3 111 1 3 1111111 1111111 1 0 0 3 3 66 3 3
lowQualScore : .......... .......... . ........ ....... . .. ....... ... ........ . . . . ..... . . . . . . . .. . ..... ... ... . .. .. . . ... . . . ....................... . .......................................................... . . .... ..... . . . . ...... . ... . . ....... ....... . . . . . .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 888 44444444 0 0 0 3 11111 0 4 9 5 4 4 0 11 4 22222 888 888 2 33 66 7 0 000 4 0 0 88888888888888888888888 0 1111111111111111111111111111111111111111111111111111111111 7 1 1111 11111 0 7 0 3 222222 7 777 7 5 7777777 7777777 0 7 3 8 2 00 3 7
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-CA-AATGTACAT-T-GAGACAGNTTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCTG-TCATGAACAGT---GTTAAATCTAGNC-TTTA-------T------A-----TC-ATGGTAAAAA------------NC-G-------------T---------A----T---A---------AAC-AAC----AATA---A-TCTGT-CGATATCAGATA----C-GCAATTCTAATACATACCACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-CA-AATGTACAT-T-GAGACAGNTTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCTG-TCATGAACAGT---GTTAAATCTAGNC-TTTA-------T------A-----TC-ATGGTNAAAA------------AC-G-------------T---------A----T---A---------AAC-AAC----AATA---A-TCTGT-CGATATCAGATA----C-GCAATTCTAATACATACCACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACATGCAAGATGTCAGAT-----TTAA-CTTTAA---ATAGCGGAATTTA-AT-T-TA-ACGTTTTTAAATC-CTT-TTTCATGAATA-CAATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAATGGTGAA-ATTA--GTTTAATTTAGAC-TTAAA------T------A-----T---TGGCAAAAATGTGGTTCTGTAAT-G-------------T---------A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCTG-TCATAAACAGG---GTTAAATTCAGTA-TTTA-------T------A-----AC-ATAGTAAAAA------------TC-G-------------T---------G----G---T---------TAC-G---------------------CGATGTCAGATA----C-GCAATTCTAATAC-------TGAAA---ATACACATACTATTA---------GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-CA-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCTG-TCATGAACAGT---GTTAAGTCTAGTCTTTTA-------T------G-----GC-ATGGTAAAAA------------TC-GTGGTTCTGTCATTT---------A----T---A---------TAC-AAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : cAC-T-GAGACTGATTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC----------------ATGAACAGT---GTTAAATATAGAC-TTTA-------T------G-----CT-ATAATAAAAA------------TT-GCAAT---------T---------A----T---A---------AAttattttg
gi|2 : TTAACACATT--G-TAATGAATAATAACGTTAAATTTA-AC-TTTAACTTGAAT------AAATGTTC-ATGTTTATAAT-----------ACAG-------------TC--------A----T---G---------AAC-AGTGTTAAATATAGACTTTATGCTATAATAAAAA----TTGCAATTATAAAACACACCACTGAAA---ATAT------TAATATA-------GTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTC-CTTTTTTTTACTTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-CA-AATGTATAT-T-GGGACAGGTTTAA--CACAT-TGTAATGAGTAATACAGTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTTG-TCCTGAGCAGT---GTTAAACCTAGTC-TTTA-------T------A-----TC-ATGGTTAGAA------------AT-G-------------T---------A----T---A---------AAC-AAC----AGTT---A-TCTGT-CGGTGTCAGATA----C-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT---CTTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-CATTTTGTAACT-T-GAGACAGATTTAA--CACGT-TG-AATGAACAATAATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCTG-TAATGAAC------GTTAAATCTAATA-TTTG-------T------A-----TCTATGATAAAAA------------AC-G-------------T---------AGTTCT---AGAATATATCAAC-AAC----AATA---A-TCTGT-CGATATTAGATA----C-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaatTA-CA-GATGTTCAT-TTGAGAGAGTTCTAA--CACAT-TGTAATCAATAACAATGTTAAATTTAAACTTCAAAT---TG---TAGACATTTTCATGTC----ATACAGTCTT-ACACA-TCTG-TCATGAATAGT---GTTAAATTTAAAC-TTCA-------A------A-----TT-GTAG
gi|5 : AC----AT--TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-GA-CATTTTCATGT-CATACAGTCTTA---CACATCTGTCATGAATAGT---GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCTG-TCATGAATAGT---GTTAAATACAGAC-TTTA-------CCATTAAA-----TC-ATGCCAAAAA------------TC-G-------------TGGTTTTGTGA----TTTGA---------AAC-AAC----AATA---A-TCTTT-CCACATAAGGTA----T-ACAATTCTAATAAATACTACTAAAATGAATACACATACTATTAAA-------GTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-CA-AATGTGCAT-T-GAGACAGCTTTAA--CACAC-TATAATGTATAATAAC--TAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-CA-AATATAATT-T-AAGACAGATTTAA--CACAT-TATGATGAATA------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTG---TAA----GT--T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-CA-AATGTATAT-T-GAGACAGGTTTAA--CACAT-TTTAATGAATAAAAACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCTG-TCCCGAACAGT---GTTAAATCTAGTC-TTTA-------T------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 22222222 11111 1 11 111 33333333333333333333333 999999999999999999999999999999999999999999999999999999999 1111 11111 111111 111 2222222 2222222 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11111111 4 4 8 2 11111 5 5 0 8 5 1 66 5 0 77777 0 888 777 5 33 1 33 3 8 111 1 1 4 00000000000000000000000 5 5 222222222222222222222222222222222222222222222222222222222 5 0 2222 00000 3 5 1 0 666666 3 111 1 3 1111111 1111111 1 0 0 3 3 66 3 3
lowQualScore : .......... .......... . ........ ....... . .. ....... ... ........ . . . . ..... . . . . . . .. . . ..... . ... ... . .. . .. . . ... . . . ....................... . . ......................................................... . . .... ..... . . . . ...... . ... . . ....... ....... . . . . . .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 888 44444444 0 0 0 3 11111 0 0 0 9 0 0 99 0 2 88888 2 888 888 6 22 8 88 2 0 000 4 0 0 88888888888888888888888 0 0 222222222222222222222222222222222222222222222222222222222 7 1 1111 11111 0 7 0 3 222222 7 777 7 5 7777777 7777777 0 7 3 8 2 00 3 7
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-CA-AATGTANAT-TGAGACAGNTTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCTG-TCATGAACAGT---GTTAAATCTAGNC-TTTA-------T------A-----TC-ATGGTAA-AA-AT------------CG-------------T---------A----T---A---------AAC-AAC----AATA---A-TCTGT-CGATATCAGATA----C-GCAATTCTAATACATACCACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-CA-AATGTACAT-TGAGACAGNTTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCTG-TCATGAACAGT---GTTAAATCTAGNC-TTTA-------T------A-----TC-ATGGTAA-AA-AN------------CG-------------T---------A----T---A---------AAC-AAC----AATA---A-TCTGT-CGATATCAGATA----C-GCAATTCTAATACATACCACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACATGCAAGATGTCAGAT-----TTAA-CTTTAA---ATAGCGGAATTTA-AT-TTA-ACGTTTTTAAATC-CTT-TTTCATGAATA-CAATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAATGGTGAA-ATTA--GTTTAATTTAGAC-TTAAA------T------A-----T---TGGCAA-AA-ATGTGGTTCTGTAATG-------------T---------A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCTG-TCATAAACAGG---GTTAAATTCAGTA-TTTA-------T------A-----AC-ATAGTAA-AA-AT------------CG-------------T---------G----G---T---------TAC-G---------------------CGATGTCAGATA----C-GCAATTCTAATAC-------TGAAA---ATACACATACTATTA---------GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-CA-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCTG-TCATGAACAGT---GTTAAGTCTAGTCTTTTA-------T------G-----GC-ATGGTAA-AA-AT------------CGTGGTTCTGTCATTT---------A----T---A---------TAC-AAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : cAC-TGAGACTGATTTAA--CACAT-TGTAATGAATAATAACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC----------------ATGAACAGT---GTTAAATATAGAC-TTTA-------T------G-----CT-ATAATAA-AA-AT------------TGCAAT---------T---------A----T---A---------AAttattttg
gi|2 : TTAACACATT--G-TAATGAATAATAACGTTAAATTTA-AC-TTTAACTTGAAT------AAATGTTC-ATGTTTATAATAC------------AG-------------TC--------A----T---G---------AAC-AGTGTTAAATATAGACTTTATGCTATAATAAAAA----TTGCAATTATAAAACACACCACTGAAA---ATAT------TAATATA-------GTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTC-CTTTTTTTTACTTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-CA-AATGTATAT-TGGGACAGGTTTAA--CACAT-TGTAATGAGTAATACAGTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTTG-TCCTGAGCAGT---GTTAAACCTAGTC-TTTA-------T------A-----TC-ATGGTTA-GA-AA------------TG-------------T---------A----T---A---------AAC-AAC----AGTT---A-TCTGT-CGGTGTCAGATA----C-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT---CTTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-CATTTTGTAACT-TGAGACAGATTTAA--CACGT-TG-AATGAACAATAATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCTG-TAATGAAC------GTTAAATCTAATA-TTTG-------T------A-----TCTATGATAA-AA-AA------------CG-------------T---------AGTTCT---AGAATATATCAAC-AAC----AATA---A-TCTGT-CGATATTAGATA----C-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaat---TACAGATGTTCAT---T-TGAGAGAGTTCTAACACATTGTAATCAATAACAAT---GTTAAATTTAAAC-TTCA-------A------A-----TT-GTAG
gi|5 : AC----AT--TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-GA-CATTTTCATGTCATACAGTCTTA---CACATCTGTCATGAATAGT---GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCTG-TCATGAATAGT---GTTAAATACAGAC-TTTA-------CCATTAAA-----TC-ATGCCAA-AA-AT------------CG-------------TGGTTTTGTGA----TTTGA---------AAC-AAC----AATA---A-TCTTT-CCACATAAGGTA----T-ACAATTCTAATAAATACTACTAAAATGAATACACATACTATTAAA-------GTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAacattttcatgtcatacagtcttacacatctgtcatgaatagtgttaaatttaaacttcaaattgtagaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-CA-AATGTGCAT-TGAGACAGCTTTAA--CACAC-TATAATGTATAATAAC--TAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACTATTATA-------GTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-CA-AATATAATT-TAAGACAGATTTAA--CACAT-TATGATGAATA------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTG---TAA----GT--T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-CA-AATGTATAT-TGAGACAGGTTTAA--CACAT-TTTAATGAATAAAAACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCTG-TCCCGAACAGT---GTTAAATCTAGTC-TTTA-------T------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 22222222 11111 11 111 22222222222222222222222 888888888888888888888888888888888888888888888888888888888 1111 11111 1111 111 2222222 2222222 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11111111 4 4 8 2 11111 5 5 5 5 6 5 0 1 66 5 0 333 0 888 777 5 33 1 33 3 4 4 111 1 1 4 4 99999999999999999999999 44 666666666666666666666666666666666666666666666666666666666 5 0 2222 00000 3 5 1 0 4444 6 3 111 1 1111111 3 1111111 1 0 0 3 3 66 3 3
lowQualScore : .......... .......... . ........ ....... . .. ....... ... ........ . . . . ..... . . . . . . . . .. . . ... . ... ... . .. . .. . . . ... . . . . ....................... .. ......................................................... . . .... ..... . . . . .... . . ... . ....... . ....... . . . . . .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 888 44444444 0 0 0 3 11111 0 0 0 0 6 0 4 0 99 0 2 555 2 888 888 6 22 8 88 2 0 0 000 4 0 0 0 88888888888888888888888 77 666666666666666666666666666666666666666666666666666666666 0 1 1111 11111 0 7 0 3 2222 7 7 777 7 7777777 5 7777777 0 7 3 8 2 00 3 7
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACATGCAAGATGTCAGAT-----TT-AACTTTA---AATAGCGG-AATTTA-AT-TTA-AC-GTTTTTAAATCCTT-TTTCATGAAT-ACAATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAA-TGGTGAA-ATTA--GTTTAATTTAGAC-TTAAA-------T------A-----T---TGG-CAAAAATGTGGTTCTGTAAT-G-------------T---------A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCT-G-TCATAAACAGG---GTTAAATTCAGTA-TT-TA-------T------A-----AC-ATAG-TAAAAAT------------C-G-------------T---------G----G---T---------TA-CG---------------------CGATGTCAG----ATAC-GCAATTCTAATAC-------TGAAA---ATACACATACT-------ATTA--GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-C-A-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCT-G-TCATGAACAGT---GTTAAGTCTAGTCTTT-TA-------T------G-----GC-ATGG-TAAAAAT------------C-GTGGTTCTGTCATTT---------A----T---A---------TA-CAAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : cAC-TGAGACTGATTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC-----------------ATGAACAGT---GTTAAATATAGAC-TT-TA-------T------G-----CT-ATAA-TAAAAAT------------T-GCAAT---------T---------A----T---A---------AA-ttattttg
gi|2 : TTAACACATT---G-TAATGAATAATAACGTTAAATTTA-AC-TT-TAACTTGAAT------AAATGTTC-ATGT-TTATAATA-----------CAG-------------TC--------A----T---G---------AA-CAGTGTTAAATATAGACTTTATGCTATAATAA----AAATTGCAATTATAAAACACACCACTGAAA---ATAT------T-------AATATAGTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTC-CTTTTTTTTACTTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-C-A-AATGTATAT-TGGGACAGGTTT--AACACAT-TGTAATGAGTAATACAGTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTT-G-TCCTGAGCAGT---GTTAAACCTAGTC-TT-TA-------T------A-----TC-ATGGTTAGAAAT--------------G-------------T---------A----T---A---------AA-CAAC----AGTT---A-TCTGT-CGGTGTCAG----ATAC-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT---CTTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-C-ATTTTGTAACT-TGAGACAGATTT--AACACGT-TG-AATGAACAATAATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCT-G-TAATGAAC------GTTAAATCTAATA-TT-TG-------T------A-----TCTATGA-TAAAAAA------------C-G-------------T---------AGTTCT---AGAATATATCAA-CAAC----AATA---A-TCTGT-CGATATTAG----ATAC-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaat---TACAGATGTTCAT---T-TGAGAGAGTTCTAACACATTGT-AATCAATAACAAT---GTTAAATTTAAAC-TT-CA-------A------A-----TT-GTAG-
gi|5 : AC----AT--TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-G-A-CATTTTCATGTCATACAGTCTT--A-CACATCTGTCATGAATAGT---GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCT-G-TCATGAATAGT---GTTAAATACAGAC-TT-TA-------CCATTAAA-----TC-ATGC-CAAAAAT------------C-G-------------TGGTTTTGTGA----TTTGA---------AA-CAAC----AATA---A-TCTTT-CCACATAAG----GTAT-ACAATTCTAATAAATACTACTAAAATGAATACACATACT-------ATTAAAGTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAacattttcatgtcatacagtcttacacatctgtcatgaatagtgttaaatttaaacttcaaattgtagaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-C-A-AATGTGCAT-TGAGACAGCTTT--AACACAC-TATAATGTATAATAAC--TAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-C-A-AATATAATT-TAAGACAGATTT--AACACAT-TATGATGAATA------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTG---TAA----GT--T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-C-A-AATGTATAT-TGAGACAGGTTT--AACACAT-TTTAATGAATAAAAACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCT-G-TCCCGAACAGT---GTTAAATCTAGTC-TT-TA-------T------------TT-AT---T-CAAGT------------T-G-------------T---------A----T---A---------A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 22222222 11111 11 111 22222222222222222222222 888888888888888888888888888888888888888888888888888888888 1111 11111 1111 111 2222222 2222222 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11111111 4 4 8 2 11111 5 5 5 5 6 5 0 1 66 5 0 333 0 888 777 5 33 1 33 3 4 4 111 1 1 4 4 99999999999999999999999 44 666666666666666666666666666666666666666666666666666666666 5 0 2222 00000 3 5 1 0 4444 6 3 111 1 1111111 3 1111111 1 0 0 3 3 66 3 3
lowQualScore : .......... .......... . ........ ....... . .. ....... ... ........ . . . . ..... . . . . . . . . .. . . ... . ... ... . .. . .. . . . ... . . . . ....................... .. ......................................................... . . .... ..... . . . . .... . . ... . ....... . ....... . . . . . .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 888 44444444 0 0 0 3 11111 0 0 0 0 6 0 4 0 99 0 2 555 2 888 888 6 22 8 88 2 0 0 000 4 0 0 0 88888888888888888888888 77 666666666666666666666666666666666666666666666666666666666 0 1 1111 11111 0 7 0 3 2222 7 7 777 7 7777777 5 7777777 0 7 3 8 2 00 3 7
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACATGCAAGATGTCAGAT-----TT-AACTTTA---AATAGCGG-AATTTA-AT-TTA-AC-GTTTTTAAATCCTT-TTTCATGAAT-ACAATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAA-TGGTGAA-ATTA--GTTTAATTTAGAC-TTAAA-------T------A-----T---TGG-CAAAAATGTGGTTCTGTAAT-G-------------T---------A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCT-G-TCATAAACAGG---GTTAAATTCAGTA-TT-TA-------T------A-----AC-ATAG-TAAAAAT------------C-G-------------T---------G----G---T---------TA-CG---------------------CGATGTCAG----ATAC-GCAATTCTAATAC-------TGAAA---ATACACATACT-------ATTA--GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-C-A-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCT-G-TCATGAACAGT---GTTAAGTCTAGTCTTT-TA-------T------G-----GC-ATGG-TAAAAAT------------C-GTGGTTCTGTCATTT---------A----T---A---------TA-CAAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : cAC-TGAGACTGATTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC-----------------ATGAACAGT---GTTAAATATAGAC-TT-TA-------T------G-----CT-ATAA-TAAAAAT------------T-GCAAT---------T---------A----T---A---------AA-ttattttg
gi|2 : TTAACACATT---G-TAATGAATAATAACGTTAAATTTA-AC-TT-TAACTTGAAT------AAATGTTC-ATGT-TTATAATA-----------CAG-------------TC--------A----T---G---------AA-CAGTGTTAAATATAGACTTTATGCTATAATAA----AAATTGCAATTATAAAACACACCACTGAAA---ATAT------T-------AATATAGTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTC-CTTTTTTTTACTTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-C-A-AATGTATAT-TGGGACAGGTTT--AACACAT-TGTAATGAGTAATACAGTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTT-G-TCCTGAGCAGT---GTTAAACCTAGTC-TT-TA-------T------A-----TC-ATGGTTAGAAAT--------------G-------------T---------A----T---A---------AA-CAAC----AGTT---A-TCTGT-CGGTGTCAG----ATAC-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT---CTTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-C-ATTTTGTAACT-TGAGACAGATTT--AACACGT-TG-AATGAACAATAATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCT-G-TAATGAAC------GTTAAATCTAATA-TT-TG-------T------A-----TCTATGA-TAAAAAA------------C-G-------------T---------AGTTCT---AGAATATATCAA-CAAC----AATA---A-TCTGT-CGATATTAG----ATAC-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaat---TACAGATGTTCAT---T-TGAGAGAGTTCTAACACATTGT-AATCAATAACAAT---GTTAAATTTAAAC-TT-CA-------A------A-----TT-GTAG-
gi|5 : AC----AT--TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-G-A-CATTTTCATGTCATACAGTCTT--A-CACATCTGTCATGAATAGT---GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCT-G-TCATGAATAGT---GTTAAATACAGAC-TT-TA-------CCATTAAA-----TC-ATGC-CAAAAAT------------C-G-------------TGGTTTTGTGA----TTTGA---------AA-CAAC----AATA---A-TCTTT-CCACATAAG----GTAT-ACAATTCTAATAAATACTACTAAAATGAATACACATACT-------ATTAAAGTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAacattttcatgtcatacagtcttacacatctgtcatgaatagtgttaaatttaaacttcaaattgtagaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-C-A-AATGTGCAT-TGAGACAGCTTT--AACACAC-TATAATGTATAATAAC--TAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-C-A-AATATAATT-TAAGACAGATTT--AACACAT-TATGATGAATA------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTG---TAA----GT--T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-C-A-AATGTATAT-TGAGACAGGTTT--AACACAT-TTTAATGAATAAAAACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCT-G-TCCCGAACAGT---GTTAAATCTAGTC-TT-TA-------T------------TT-AT---T-CAAGT------------T-G-------------T---------A----T---A---------A
blockSeqs : . CTGATCA ACATATGG CTTATAG A TC GTATCAC TCG ATGTAT G G A T TTAAA A . . T T G A . C AAC . . T TA A AT C . A AAC T T T . ACTTGAATAAATGTTC GT CGTGGTTCTGTCATTTATA . GTTA TAGAC G G G . T C TGA A . T CACACTC T T T CA G G
blockSeqs : . TTCT . . C A . . TTAT . . A A . . . . . A . G . . ACA . . G TA A AT C . . . C T . . CCATTAAATC G CGTAGTTCTAGAATATATC . . A A . T . . T . A . T . C T T CT . C
blockSeqs : . TAA . . C T . . ATAT . . . C . . . . . C . A . . AAT . . T TA A AT T . . . A A . . TATCT G CGTGGTTTTGTGATTTGA . . A G . G . . T . A . A . G T . .
blockSeqs : . CA . . C G . . ATA . . . C . . . . . C . T . . AAC . . G TA A A C . . . T A . . TAAC A TGCAATTATA . . A G . G . . A . A . T . G .
blockSeqs : . CG . . A T . . ATA . . . C . . . . . A . C . . AAC . . G TA A C G . . . C T . . TGGC T ACAGTCATG . . A T . C . . . . . . . . G
blockSeqs : . CA . . C T . . AT . . . A . . . . . T . A . . . . . G T A C C . . . C T . . TGCT A CGTGGT . . . . .
blockSeqs : . CA . . C T . . AT . . . C . . . . . . G . . . . . . . . A C . . . T A . . TATC G TGTATA .
blockSeqs : . CA . . C T . . GT . . . T . . . . . . . . A A . . AATT C GTATA
blockSeqs : . . . T A . . . G . . . . C T . . TTT .
blockSeqs : . . . .
blockSeqCons : ********** CA******** AT****** ** *** *** TA AC *** TANC******************* **** *******
originalCons : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TA-------T------A-----TC-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
finalCons : ATATATATATT----------TATTTCA--------TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TACAT------T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-TATANC-------------------ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 1111111111 11111111 1111111 1111111 22222222 11111 11 111 1111111 222222222222222 000000000000000000000000000000000000000000000000000000000 1111 11111 1111 111 2222222 2222222 1
lowQualScore : 9999999999 7777777777 0 33333333 1111111 3 66 4444444 777 11111111 4 4 8 2 11111 5 5 5 5 6 5 0 1 66 5 0 333 0 888 777 5 33 1 33 3 4 4 111 1 1 4 4 3333333 444444444444444 55 222222222222222222222222222222222222222222222222222222222 5 0 2222 00000 3 5 1 0 4444 6 3 111 1 1111111 3 1111111 1 0 0 3 3 66 3 3
lowQualScore : .......... .......... . ........ ....... . .. ....... ... ........ . . . . ..... . . . . . . . . .. . . ... . ... ... . .. . .. . . . ... . . . . ....... ............... .. ......................................................... . . .... ..... . . . . .... . . ... . ....... . ....... . . . . . .. . .
lowQualScore : 4444444444 2222222222 4 22222222 8888888 6 00 4444444 888 44444444 0 0 0 3 11111 0 0 0 0 6 0 4 0 99 0 2 555 2 888 888 6 22 8 88 2 0 0 000 4 0 0 0 0000000 333333333333333 22 444444444444444444444444444444444444444444444444444444444 0 1 1111 11111 0 7 0 3 2222 7 7 777 7 7777777 5 7777777 0 7 3 8 2 00 3 7
consensus : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-T-------AT------AN-----C-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
Reference ( family-329 ) : ATATATATATT----------TATTT--C-----A-TACAAAAGGCCATAGGCCCATCAGCATAC--------AA-------TCATCAAAT-TACATGCAATTT-------AAACAAGTAATCAATGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACGAATAAAGTGAAAT-----TTAAACTTTAA-TAATA-C-A-AATGTANAT-TGAGACAGNTTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAAACTTTAACT---TG---TATAAATGTTCATGTTTATAATACAGTCTTAACACACTCT-G-TCATGAACAGT---GTTAAATCTAGNC-TT-T-------AT------AN-----C-ATGG-TAAAAAT------------C-G-------------T---------A----T---A---------AA-CAAC----AATA---A-TCTGT-CGATATCAG----ATAC-GCAATTCTAATACATACCACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATCGAGTGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCAAATATGTA-CGTGGA
gi|1 : ATATATATATTAGTCATCTTATATTT----------TACAAAAT-CCACATACACACCAGCATAC--------AA-------TTAACATAA-TATATGCAATAT-------AAGAAAGCAATCAATGGTTATGCTACACTGTTTT---AAC----ATACT-T-A-ACATGCAAGATGTCAGAT-----TT-AACTTTA---AATAGCGG-AATTTA-AT-TTA-AC-GTTTTTAAATCCTT-TTTCATGAAT-ACAATGTCAAATTTAAACTTTTAATAAATGAAATATAAATGTT----------ATGCAGTCTT--TACACTTTAA-TGGTGAA-ATTA--GTTTAATTTAGAC-TTAA-------AT------AT--------TGG-CAAAAATGTGGTTCTGTAAT-G-------------T---------A----T---A---------AACCAAC----AACA---A-TATTT-CACTTTCAGTTAAAAAC-GCAAATCTTATCCATTCCAATGAAA---ATAGGCGTATTATTATAAATTATAGCG-------TAGAAGATAAGCAATCAAGTGGAATTAAACAATTCATTTCGCCTTTT
gi|10 : ATACATATATT----------TATTTTTC-----T-TGCAAAAGGCCGTAAACCCGTCAGCACACACATATGGAA-------TTATAAACA-TACATGCCTTTTGTATCACAAACAAATAATAAATGGCACTGTTGTACCGTATT---CAC----ATA-T-TGA-TAATGAATAAAGTAAAatgaattttcgtaaaagcatatcgatactgccgaataataaacatgttttattattcatttgtttaacaaatttgggtatattagggtttgtcctttaacatgagtatacatatttgctatgtttatgtttatacaagggcatccagtagtgtaat
gi|11 : aatgattttacagtttttttgttgattggtgaataatatatataattatTCT-G-TCATAAACAGG---GTTAAATTCAGTA-TT-T-------AT------AA-----C-ATAG-TAAAAAT------------C-G-------------T---------G----G---T---------TA-CG---------------------CGATGTCAG----ATAC-GCAATTCTAATAC-------TGAAA---ATACACATACT-------ATTA--GTGCACACTCTAAATGAGAAACGATCGAGTGGAATAAAATTATTCGTTTga
gi|13 : caAAGGTCATAGCTCCATCAGCATAC--------AA-------TCATCAAAT-TATATGCAGTTT-------AAACAAGTAATTATTGGCAATGTTGTACAGTCTA---TAC----A-----T-A-TCGAGAGTAAAGTGAAATTTAAATTAAACTTTTA-TAATA-C-A-AATG
gi|14 : T---TG---TATAAATGTTCATTTTTATAATACAGTCTTAACACA-TCT-G-TCATGAACAGT---GTTAAGTCTAGTCTTT-T-------AT------GG-----C-ATGG-TAAAAAT------------C-GTGGTTCTGTCATTT---------A----T---A---------TA-CAAC----AATA---A-CCTGT-
gi|15 : AGACCATAGGCCCATCAGTATAC--------AA-------TCATCAAAG-TACATGCTATCT-------AAACAAGTAATCAAAGGCAATTTTGTACATTCTT---TACTT--AT--T-T-A-TCAC----AAAGTGAAAT-----T
gi|16 : T----------TAATG--C-----A-TGCAAAAGGTCATAGGATCATCAGCATAC--------GG-------ACAT-AAATCTAAA-GCAGATT-------AAACAATTAAACAATGGCA
gi|17 : ACATGTATATG----------TATTT--T-----AATTCAAAGGACCATAGGCCTATCAGCATAC--------AACTTATAGTCAT-AAA---ACATACA
gi|19 : ttTT----------TATTT--C-----G-TACAAAATGCCATAAGCCCTTCAGCAAAC--------AA-------TCGTCAAAT-AACAT
gi|2 : cAC-TGAGACTGATTT--AACACAT-TGTAATGAATAATAACGTTAAATTTAA-CTTTAACT---TG---AATAAATGTTCATGTTTATAATACAGTC-----------------ATGAACAGT---GTTAAATATAGAC-TT-T-------AT------GC-----T-ATAA-TAAAAAT------------T-GCAAT---------T---------A----T---A---------AA-ttattttg
gi|2 : TTAACACATT---G-TAATGAATAATAACGTTAAATTTA-AC-TT-TAACTTGAAT------AAATGTTC-ATGT-TTATAATA-----------CAG-------------TC--------A----T---G---------AA-CAGTGTTAAATATAGACTTTATGCTATAATAA----AAATTGCAATTATAAAACACACCACTGAAA---ATAT------T-------AATATAGTG-------TAGACGAGAAAAGATCAAGTGGAATAAAGTGATTCATTTCTC-CTTTTTTTTACTTTCAAATATGTA-CATGGAacacaccactgaaaatattaatatagtgtagacgagaaaagatcaagtggaataaagtgattcatttctccttttttttactttcaaatatgtacatggatagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|3 : actgagactgatATATATATATT----------TACTT--C-----A-TACAAAAGGTCATAGGCCCATCAGCATAC--------AA-------TTATAAAAT-TACATGCAATTT-------AAACAAGTAAGCACTGGCAATGTTGTACAGTCTT---TAC----AT--T-T-A-TCACTAATAAAGTGAAGT-----TTAAACTTTAA-TAATG-C-A-AATGTATAT-TGGGACAGGTTT--AACACAT-TGTAATGAGTAATACAGTTGAATTTAAACTTTAACT---TG---TATAAATGATCATTTTTATAATACAGCCTTAACACATTTT-G-TCCTGAGCAGT---GTTAAACCTAGTC-TT-T-------AT------AT-----C-ATGGTTAGAAAT--------------G-------------T---------A----T---A---------AA-CAAC----AGTT---A-TCTGT-CGGTGTCAG----ATAC-GCAGTTCTAATACATAGTGCTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGAGAAACGATTAGGTGGAATAAAATGATTCATTTTTCTTTTTTCT---CTTT----TGTGTAGCGTGAAtagtttccgatagatcttatattttctttattcaacaattctaaaatctggatatgttatttttttcctataatatggtttaatgtatttattacgtatatttttatacaagggatattcattcaagagtaaagttaaattcgtcctcaagtgtattacacaaggcgcatttacgttcgtttacgagtatagattgtggttttatgccatcttccggtctcttttgcgagtctatgagaaaatactcttaatcgagttttcgacgttgactaagtctaaataatgtttaaatgtaaatgttgaaagacaacaatatgtttttcccgact
gi|4 : ATATGTTTATT----------TATTT--C-----A-TACAAAAGGCCA-------ATCAGCATGC--------AA-------TCATCAAAT-TTCATCCAATTT-------AGACAATTTATCAAAGGCAATGTTATACACTCTT---TACAT--AT--T-T-A-TCACGAATAAAAAAGAAT-----TTAAACTTTAA-TAAAA-C-ATTTTGTAACT-TGAGACAGATTT--AACACGT-TG-AATGAACAATAATGTTATATTCAAACTTTAACT---TG---TAT-GATGTATATGTTTATAATACAGTCTTAACAC-CTCT-G-TAATGAAC------GTTAAATCTAATA-TT-T-------GT------AT-----CTATGA-TAAAAAA------------C-G-------------T---------AGTTCT---AGAATATATCAA-CAAC----AATA---A-TCTGT-CGATATTAG----ATAC-ACCATTCTA
gi|5 : gaaagctatgtatacaatgtatgacgtattgtgaaataaggaagtttaataaatttaagttgcacatttgtagaat---TACAGATGTTCAT---T-TGAGAGAGTTCTAACACATTGT-AATCAATAACAAT---GTTAAATTTAAAC-TT-C-------A
gi|5 : AC----AT--TGT-AATCAATAACAATGTTAAAT-----TTAAACTTCAAATTGTA-G-A-CATTTTCATGTCATACAGTCTT--A-CACATCTGTCATGAATAGT---GTTAAATTTAAACTTCAAAT---TG---TAGAAATTTTCATGTC----ATACAGTCTTA-CAC-CTCT-G-TCATGAATAGT---GTTAAATACAGAC-TT-T-------ACCATTAAAT-----C-ATGC-CAAAAAT------------C-G-------------TGGTTTTGTGA----TTTGA---------AA-CAAC----AATA---A-TCTTT-CCACATAAG----GTAT-ACAATTCTAATAAATACTACTAAAATGAATACACATACT-------ATTAAAGTG-------TAGAGGAGAAATGACCGAGTGAAATAAAATAATTAATTTCTCTTTTTTTTTTACTTTCAAAaattgtagacattttcatgtcatacagtcttacacatctgtcatgaatagtgttaaatttaaacttcaaattgtagaaattttcatgtcatacagtcttacacctctgtcatgaatagtgttaaatacagactttaccattaaatcatgccaaaaatcgtggttttgtgatttgaaacaacaataatctttccacataaggtatacaattctaataaatactactaaaatgaatacacatactattaaagtgtagaggagaaatgaccgagtgaaataaaataattaatttctcttttttttttactttcaaaagcacatatgggtttaaatcggaaataa
gi|6 : tacagatgttcatttgagagagttctaacTATATATCTT----------TATTT--CTGATCA-CACAAGAGGCAGAAGACCCATCAGCATAC--------AG-------TCACCAAAT-TAAATGTAATTT-------AAATAAATAATCAATGGTATGGTTGTACAGTATT---TAC----ATA-T-T-AATCACGAATAAAGTGAAAT-----TTAGACTTTAA-TAATA-C-A-AATGTGCAT-TGAGACAGCTTT--AACACAC-TATAATGTATAATAAC--TAAATTTAAagcacatatgggtttaaatcggaaataa
gi|7 : tgaaaatgtacatacattgtatttacacaaataaaatatgggaacatcggttaattagataatacatcaatATACAACTGAAA---ATACACATACT-------ATTATAGTG-------TAGAGGTGAAACGATCAAATGGAATAAAATAATTCATTTCTCTTTTTTTTTTACTTTCTAAAATGTG-CCTGGA
gi|8 : TATATCTT----------TATTC--C-----A-TACAAAAGGCCATAGACCCATCAGCATAC--------GA-------TCATCAAAT-TACATTCAATTT-------AAACAAGTAGTCATTGACAATGTTGTACAGTTTTTCGTACATGTAT--T-T-A-TCATGAATAAA-TGAAAT-----TTAAACTTTAG-TAATA-C-A-AATATAATT-TAAGACAGATTT--AACACAT-TATGATGAATA------------CTAAACGTTGACT---TG---TATAtaatttacaaataatacttacgtttccattattcaatagttcaacaaatttgggtatgttacttttttccaataatatgattttatatatttattacgtatatttttatacaaggtacattcaagtgtaaat
gi|9 : gtcgtatacaagtTCTG---TAA----GT--T-C-A-TTAGGAATAATTTAAAAT-----TTGAACTTTAA-TAATA-C-A-AATGTATAT-TGAGACAGGTTT--AACACAT-TTTAATGAATAAAAACGATAAATTTGAACTCTAACT---TG---TATATAGTTTCATGTTTATAATACA-TCTAAACACA-TCT-G-TCCCGAACAGT---GTTAAATCTAGTC-TT-T-------AT------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTCATACAGTTTTATACTTACATATGACACTGTCTTAAATACTAAAATTTGAAACTTAATTGTTAACGTAACAGTTGTCTTGTTATGCAGTTTTATACTTACATCTGACACTGTCTTAAATACTTATATTTGACACTTTATTATTA
Unaligned ( gi|18 ): AAATAACTGTATGTTCCTGTGTGTTTTAAATTATTTGAATATTTAGATATTTATAGAGATTTTCCTCGACATA