lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333
lowQualScore : 1 4444444444444444444 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44 1 33333333 1 1 1 1 1111 1 3 1 1 1 111 2222222222222222222222222222222222222 11 1 111 222222 11 1 1 11 1 222 1 1 0000000000000000000000000000000000000000000000000000000 2222 66666666666666 999999999999999 9999999999 22222 2 1 1 1 22 1 1 1 11 1
lowQualScore : 0 55 6 4 777 8888888888888888888 66 777 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 3 1 99 5 4 0 4 77 6 5 3 5 22222222 0 0 88 5 0 66 7 7 0 1 5 5 8 1111 5 5 7777 5 0 1 7 7 6 2 5 6 0 2 2 5 2 444 4444444444444444444444444444444444444 99 2 1 7 3 5 1 3 666 333333 11 1 0 5 33 3 7 55 1 6 2 5 1 77 000 0 2 7 6 4444444444444444444444444444444444444444444444444444444 0000 99999999999999 0 3 6 444444444444444 1 6 99 55 9999999999 22222 3 4 0 77 4 7 6 6 7 7 6 11 6 5 6 6 6 6 7 7 6 22 5
lowQualScore : . .. . . ... ................... .. ... ................................................................................................................ . . . .. . . . . .. . . . . ........ . . .. . . .. . . . . . . . .... . . .... . . . . . . . . . . . . . . ... ..................................... .. . . . . . . . ... ...... .. . . . .. . . .. . . . . . .. ... . . . . ....................................................... .... .............. . . . ............... . . .. .. .......... ..... . . . .. . . . . . . . .. . . . . . . . . . .. .
lowQualScore : 1 11 0 1 000 3333333333333333333 77 888 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 9 9 66 7 0 2 0 88 8 6 1 0 99999999 5 2 22 0 0 11 0 2 2 5 0 7 3 0000 0 6 6666 0 7 7 0 8 0 0 0 0 6 8 8 0 5 000 0000000000000000000000000000000000000 00 8 4 8 2 4 4 2 888 000000 00 4 0 5 88 8 8 66 0 8 0 0 2 88 222 5 2 0 0 3333333333333333333333333333333333333333333333333333333 3333 22222222222222 2 5 0 333333333333333 0 0 88 55 0000000000 55555 0 0 0 00 0 0 0 0 0 0 0 00 0 0 0 0 0 0 0 0 0 00 0
consensus : CAACAACAACAACAACAATTACATTT-ATTCTCTCATTACAT---TTACATGT-----A--------AAAATGAGG--AAA---AA-------ATA----C----AA---------A----------GATAGTGTT----------------A-AT------T--GT--GTTG---G--N-TA---GTC---C-----TCTCCT-ATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCCGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGG---TAC--TAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGGCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATA-ATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTG-AAGTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTAT----------TT----------G----GCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATAGAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATAT--TTGACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAGTTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--NGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACGTTATGCAGCGCATGTATATCATGTGCGGTTAAATGTN-A---------TTTT----TTAAAA----GC-----------------GTGCG--CGTCTAAATAAATAG----TTTNT----GAACCCACTTCGTTACAATTACATTTTAAG-A-AC----T---TTTCTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAGANNATCCTACATTTTGATGTACGCNGTTNAANTCGGGTAANNACTNAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGG
Reference ( gi|1 ) : CAACAACAACAACAACAATTACATTT-ATTCCCGCATTACAT---TTAAAGGT-----T--------AAAATGAGG--AAA---AA-------GTT----C----AA---------A----------GAT----TT----------------A-AT------T--GT--GTTG---G--A-TA---GTC---A-----TCTCCT-ATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGG---AAT--TAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATA-ATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTG-AAGTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTAT----------TT----------G----G---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATAT--TTGATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT------------------CTCT----TTGAAA----GT-----------------GTGCG--CATCTAAATAAATAGAGC-TTTGT----GAACCCACTTCGTTATAATTACATTTTA-----------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAAT-CTATGGTTAGATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGGA
gi|9 : CAACAACAACAACAACAATTAAATTT-ATTCTCTCATTACAT---TTACATGT-----A--------AAAATGAGGGGAAA---AA-------ATA----C----AATTTTATAACA----------GGTAGTGTT----------------T-AT------T--GT--GTTG---G--C-TA---GTC---C-----TCTCCT-GTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGG---TAC--TAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACC
gi|4 : CAATAATGATAACAATAATAACATTT-ATTCTCTCACTACGT---TAACATGT--------------AAAATGAGG--GAACATAACAC----ATT----CTGTTAC---------A----------TATAGTGTC----------------A-GA------T--GT--GTTG---GCTA-TAA--GTC---C-----TCCCTT-ACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-G--------GGTC-CACCTTCGTTAGATTCTTGTGGGTAGACCAGT---TAC--GAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATA-AT-TTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAATAAAT-AGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCATG---------TT----------GCGTAG---------GAAAA-AGT--CATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTT---TAGA---CGGTGTT
gi|10 : aAACAACAACAACAACAACTACATTT-ATTCTCTCATTACAT---TTACGTGT-----A--------AAAATTAGG--AAA---AA-------GTA----C----AA---------ATAGTATAGCAGGTAGTGTT----------------A-AT------T--GT--GTTA---A--A-TA---ATC---C-----TCTCCT-ATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGG---TTC--TTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAg
gi|12 : AACAACAACAATAATA-TTAAATTTTATTCTCACATTACATAATTTACATGT-----A--------GAAATAAGGG-AAA---AA-------GTA----C----AA---------A----------C-T----TT----------------GTAT------CAGGT--GTTGTCAG--G-T----GTCCCAACTGGTTCTCCCCATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGACT--GATG------CTAGGTATAAT--TAATACCA-----TATCCAAAGCGTTA----TCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGG
gi|22 : AATAACAACAACAACAATTACATTT-TTTCTCTCATTACAT---TTAt
gi|20 : ttCAATATCAACAACAA---CATTT-AATCTCTCATTAAAC---TTACATGT-----C--------AAAATGTGG--GGA---AA-------catg
gi|11 : aatatCAACA-CAACAATAACATTT-TTTCTCTCATTACAT---TAACATGT-----A--------AAAATGAGGGGAAA---AA-------A-----------AC---------A----------GAT----TTTGTAACAGGCAGTGTCA-AT------T--GT--GTTT---G--C-TG---ATC---C-----TCTCCT-ATGACGCCCAGTGTAAACCCAGTCCG-----CG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GG-----------TA--GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATG-ATTTTGAATT--taca
gi|3 : CAACAACACTTACATTT-ATTCTCTTATTACAT---TTATATGT-----A--------AAAATGAGG--AAA---AGTACAAATGTTATAAC----AAGT-------A----------GCG----TT----------------A-AT------T--CT--GTTT---G-----------------------TCCT-ATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGG---TATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATA-ATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTG-AAGTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTAT-GGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTT----------G----G---------GGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATAT--TTGGCGGTGCAGCAAGAAACCGGTGTAATTCAaa
gi|7 : TTAAGTTT--TTTTCTCATTACAT---TTACATGTAAAAATGAAGGAAAAAAATGAGG--AAA---AA-------ATA----C----AA---------AT---------GAT----AT----------------A-ACAGGTAGT--GTCAGTTA---G--ATTAACTGGC---C-----TCTCTT-ATCACATCTAacgttaaatgta
gi|17 : tACATTT-ATTCTCTCATTACAT---TAACATAT-----A--------AAAATGAGG--AAA---AA-------ATA----C----AA---------A----------tttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|5 : ----TC----------------A-AT------T--AT--ATTG---G--T-TG---GCC---------TCTCCT-ATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGG---TAC--TAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACAT-TTCAATT--A-AA-GCGTCATAAATCAG---AGAAGTGTG-ACATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTAT----------TCGGCTACCTGGG----G---------GAAAAC-GTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACTATttttataacacgtagtgtcaattatgcta
gi|2 : aaaaggtaatgTCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGG---TAC--TACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATA-ATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTG-AAGTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTAT----------TT----------G----GCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATAT--TTGACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAATGTTTA---------TTTTAA--TTAAAATTCCGC-----------------GTTCT--CGTTGAAACAAATAGTGTGTTTCT----GAACCCTATTTGTTACAATTACATTTTAAACAAAC----TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAagaaatcaataattagatat
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|18 : tatGTGAGGTAGCCTCGGAGTTTATCATTATA-AT-TTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTA-Attataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|14 : ccTGTCATTATA-ATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTG-AAGTACATGTTAGT
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTG-AAATACATGTCAGTACGCTATCGAGT
gi|7 : a-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAaaatggtgaatcagcgtcatcaatatata
gi|13 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCGGTTCGCCGTGAGTGAAATTAC---ATTAT----------TT----------G----GCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATAT--TTGATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACg
gi|8 : GTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAATGTG-----------TTTTTTAATTAAAA----GTTGGCGTTTTAGTTGAAAGTGTGGACATCTAAATAAATAG----TGTGTTCCAGAATCCACTTCGTTACACTTACATTTTAAGGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCT--ATCATCCTACATTTTGATAT---TTATTGAAATCGGGTAATTACTTAA
gi|16 : CATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGtt
gi|6 : CGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAGTCTGCGTTCTCG----TTGAAA----GG-----------------GTGAG--CATCTAAATAAATAG------TGT-----------CTTCGTTACAATTACATTTTA-----------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGG
gi|21 : -TTTCT----GAACCCACTTCTTTACAATTACATTTTA-----------
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AACAACAGCAATAATATAGTTTATTCTCTCATTACATGTTCATTATAAACAGAGGAGAAAAAATGTAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222 11111111 88888888888888888888888888888888888 1111111111111111 1 111 111111 3333333333 11 111 333333333333333333333333333333333333333333333 2222 22222222222222222 77777777777777777 4444444444 22
lowQualScore : 3 0 3 555 3 2222222222222222 66666 3 3 33333333 66666666666666666666666666666666666 4 0 5 7777777777777777 4 0 0 5 5 0 66 1 4 777 66 66 0 8 55 4 6 8888 4 3 4 5 1 3 3 0 111 6 1 999 1 1 2 1 0 999999 99 8 5555555555 11 1 1 3 222 1 2 2 3 999999999999999999999999999999999999999999999 1111 4 22 2 55555555555555555 1 88888888888888888 2 3 22 0000000000 7 1 1 1 44 22 1 4 4 4 3 3 4 4 2
lowQualScore : . . . ... . ................ ..... . . ........ ................................... . . . ................ . . . . . . .. . . ... .. .. . . .. . . .... . . . . . . . . ... . . ... . . . . . ...... .. . .......... .. . . . ... . . . . ............................................. .... . .. . ................. . ................. . . .. .......... . . . . .. .. . . . . . . . . .
lowQualScore : 6 4 3 888 3 0000000000000000 88888 6 6 22222222 44444444444444444444444444444444444 0 9 3 2222222222222222 4 2 5 0 0 5 11 9 4 888 11 33 9 9 55 1 5 6666 4 9 7 0 7 0 2 7 777 7 0 222 0 0 5 0 7 222222 22 0 0000000000 00 0 0 8 000 0 0 0 2 000000000000000000000000000000000000000000000 2222 2 88 0 22222222222222222 0 33333333333333333 0 2 00 0000000000 3 0 0 0 00 00 0 0 0 0 0 0 0 0 5
consensus : CAACAACAACAACAACAAT-TACA-TTTATTCTCTCATTAC---ATTTACAT-GTAAAAATG-------------A--GG--A--AA-A-AA--------TACA-------A----------A----------GG----TAGTGTCAATTG-TGTTGGCTG---GTCC--------TCT-CCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-TC---GTTCT-GTTG-----------------------AAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAAT-CTACG-TT-GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Reference ( family-3132 ) : CAACAACAACAACAACAAT-TACA-TTTATTCTCTCATTAC---ATTTACAT-GTAAAAATG-------------A--GG--A--AA-A-AA--------TACA-------A----------A----------GA----TAGTGTTAATTG-TGTTGGNTA---GTCC--------TCT-CCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCCGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGGCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATAGAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAGTTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--NGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACGTTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----G-TN---ATTTT--TTA-----------------------AAA----GCGTGCGCGTCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GAAC------T---TTTCTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAGANNATCCTACATTTTGATGTACGCNGTTNAANTCGGGTAANNACTNAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGG
gi|1 : CAACAACAACAACAACAAT-TACA-TTTATTCCCGCATTAC---ATTTAAAG-GTTAAAATG-------------A--GG--A--AA-A-AG--------TTCA-------A----------A----------GA----T----TTAATTG-TGTTGGATA---GTCA--------TCT-CCTATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGGA---A--TTAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTGAA-GTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGG---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATA----------TTT--GATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT-----------------CTCT--TTG-----------------------AAA----GTGTGCGCATCTAAATAAATA----GAGCTTTGT----GAACCCACTTCGTTATAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAAT-CTATGGTTAGATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGG
gi|10 : AACAACAACAACAACAAC-TACA-TTTATTCTCTCATTAC---ATTTACGT-GTAAAAATT-------------A--GG--A--AA-A-AG--------TACA-------A----------ATAGTATAGCAGG----TAGTGTTAATTG-TGTTAAATA---ATCC--------TCT-CCTATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGGT---T--CTTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAa
gi|11 : CAACA-CAACAAT-AACA-TTTTTTCTCTCATTAC---ATTAACAT-GTAAAAATG-------------AGGGG--A--AA-A-AAACAGATTTTGTA-------AC---------A----------GG----CAGTGTCAATTG-TGTTTGCTG---ATCC--------TCT-CCTATGACGCCCAGTGTAAACCCAGTCC-----GCG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GGT---A----------GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATGATTTTGAATT--
gi|12 : AACAACAACAATAAT-AT-TAAATTTTATTCTCACATTACATAATTTACAT-GTAGAAATA-------------AG-GG--A--AA-A-AG--------TACA-------A----------A----------CT----TTGTATCAGGTGTTGTCAGGT----GTCCCAACTGGTTCTCCCCATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGA--CTGAT-----G-CTAGGTATAA--TTAATACCA-----TATCCAAAGCGTT----ATCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGGaa
gi|13 : GTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATA----------TTT--GATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACt
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|14 : tatTGTCATTATAATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTGAA-GTACATGTTAGTttataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTGAA-ATACATGTCAGTACGCTATCGAGT-------------AAATGGTGAAT
gi|16 : aCATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGcagcgtcatcaatatata
gi|17 : ACA-TTTATTCTCTCATTAC---ATTAACAT-ATAAAAATG-------------A--GG--A--AA-A-AA--------TACA-------A----------ATTTTAT----AACACGTAGTGTCAATTA-TGCT
gi|18 : GTGAGGTAGCCTCGGAGTTTATCATTATAA-TTTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTAAa
gi|19 : ccAACAACAGCAATAATATA-G-TTTATTCTCTCATTAC---ATGTTCATTATAAACA-G-------------A--GG--AGAAA-A-AA--------TGTA-------A----------
gi|2 : TCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGGT---A--CTACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATA----------TTT--GACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----GTTT---ATTTTAATTA-----------------------AAATTCCGCGTTCTCGTTGAAACAAATAGTGTG---TTTCT----GAACCCTATTTGTTACAATTACATTTTAAACAAAC------TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAt
gi|20 : CAATATCAACAACAA----CA-TTTAATCTCTCATTAA---ACTTACAT-GTCAAAATG-------------T--GG-----GG-A-AA--------TACA-------
gi|21 : aatat----G---TTTCT----GAACCCACTTCTTTACAATTACATTTTAA--G
gi|22 : tagcgtAATAACAACAACAACAAT-TACA-TTTTTTCTCTCATTAC---ATTTACAT-Gcatactctgtttccta
gi|3 : ttCAACAACACT-TACA-TTTATTCTCTTATTAC---ATTTATAT-GTAAAAATG-------------A--GG--A--AA-A-G---------TACA-------A----------ATGTTATAACAAG----TAGCGTTAATTC-TGTTTG--------------------T-CCTATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGGT---ATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATAATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTA-TGGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTTGGGGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATA----------TTT--GGCGGTGCAGCAAGAAACCGGTGT
gi|4 : CAATAATGATAACAATAAT-AACA-TTTATTCTCTCACTAC---GTTAACAT-GTAAAA-TG-------------A--GG--G--AACATAA--------CACATTCTGTTAC---------A----------TA----TAGTGTCAGATG-TGTTGGCTATAAGTCC--------TCC-CTTACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-GG-GTC------CAC--CTTCGTTAGATTCTTGTGGGTAGACCAGTT---A--CGAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATAA-TTTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAAT-AAATAGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCA-T---GTTGCG--TAGGAAAAAGT--CATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTTTAGACGGTGTaattcaacgttaaatgta
gi|5 : aA-------A----------A----------GG----TAATGTCAATTA-TATTGGTTG---G-CC--------TCT-CCTATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGGT---A--CTAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACATTTCAATT--A-AA-GCGTCATAAATCAGAGA---AGTGTGAC-ATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTA-TTCGGCTACCTGGGGGAAAACGTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACtg
gi|6 : aCGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAG-TCTGCGTTCTCGTTG-----------------------AAA----GGGTGAGCATCTAAATAAATA----G---TGT-------------CTTCGTTACAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGGtatagaaatcaataattagatat
gi|7 : T-TAAG-TTT-TTTTCTCATTAC---ATTTACAT-GTAAAAATGAAGGAAAAAAATGA--GG--A--AA-A-AA--------TACA-------AATGATATAACA----------GG----TAGTGTCAGTTA-GATTAACTG---G-CC--------TCT-CTTATCACATCTA
gi|7 : t-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAtttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|8 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAAT-----G-TG----TTTT--TTAATTAAAAGTTGGCGTTTTAGTTGAAA----GTGTGGACATCTAAATAAATA----G---TGTGTTCCAGAATCCACTTCGTTACACTTACATTTTAA--GGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCT--ATCATCCTACATTTTGATAT---TTATTGAAATCGGGTAATTACTTAg
gi|9 : CAACAACAACAACAACAAT-TAAA-TTTATTCTCTCATTAC---ATTTACAT-GTAAAAATG-------------A--GGGGA--AA-A-AA--------TACA-------ATTTTATAAC-A----------GG----TAGTGTTTATTG-TGTTGGCTA---GTCC--------TCT-CCTGTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACCatt
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 2222222222222 111111 1111111 9999999999999999999999999999999999999999 11111 111 111111 3333333333 11 111 333333333333333333333333333333333333333 2222 22222222222222222 77777777777777777 66666666666 1
lowQualScore : 3 0 3 555 3 0000000000000 444444 3 3 3 1111111 7777777777777777777777777777777777777777 3 0 11111 0 0 5 5 5 66 1 4 777 66 66 0 8 55 2 6 8888 4 3 4 5 1 3 3 0 111 6 1 999 1 1 1 1 0 999999 99 8 5555555555 11 1 1 3 444 1 3 888888888888888888888888888888888888888 1111 4 22 55555555555555555 1 88888888888888888 6 88888888888 6 3 1 1 1 2 1 1 1 1
lowQualScore : . . . ... . ............. ...... . . . ....... ........................................ . . ..... . . . . . .. . . ... .. .. . . .. . . .... . . . . . . . . ... . . ... . . . . . ...... .. . .......... .. . . . ... . . ....................................... .... . .. ................. . ................. . ........... . . . . . . . . . .
lowQualScore : 6 4 3 888 3 0000000000000 555555 6 6 6 8888888 2222222222222222222222222222222222222222 7 1 44444 2 5 0 0 5 11 9 4 888 11 33 9 9 55 4 5 6666 4 9 7 0 7 0 2 7 777 7 0 222 0 0 0 0 7 222222 22 0 0000000000 00 0 0 8 222 0 2 888888888888888888888888888888888888888 2222 2 88 22222222222222222 0 00000000000000000 7 33333333333 7 3 0 0 0 5 0 0 0 0
consensus : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TAC-GTT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Reference ( family-3132 ) : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCT-GTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TAC-GTT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
gi|1 : CAACAACAACAACAACAAT-TACATTT-ATTCCCGCATTACAT---TTAAAG-GTTAAA-------------ATGAGG---A--AA-A-AG-TT-------CA-------A----------A----------G----------AT----TTAATTGTGTTGGATA---GTCATCTCCTATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGGA---A--TTAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTGAA-GTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGG---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATA----------TTT--GATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT-------------------------------------CTCT--TTGAAA----GTGTGCGCATCTAAATAAATA----GAGCTTTGT----GAACCCACTTCGTTATAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAATC-TATGGTTA-GATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGG
gi|10 : AACAACAACAACAACAAC-TACATTT-ATTCTCTCATTACAT---TTACGT-GTAAAA-------------ATTAGG---A--AA-A-AG-TA-------CA-------A----------ATAGTATAGCAG----------GTAGTGTTAATTGTGTTAAATA---ATCCTCTCCTATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGGT---T--CTTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAa
gi|11 : CAACA-CAACAAT-AACATTT-TTTCTCTCATTACAT---TAACAT-GTAAAA-------------ATGAGGGGAA--AA-A-AA-CAGATTTTGTA-------AC---------A----------G----------GCAGTGTCAATTGTGTTTGCTG---ATCCTCTCCTATGACGCCCAGTGTAAACCCAGTCC-----GCG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GGT---A----------GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATGATTTTGAATT--
gi|12 : AACAACAACAATAATA-T-TAAATTTTATTCTCACATTACATAATTTACAT-GTAGAA-------------ATAAGG---G--AA-A-AAGTA-------CA-------A----------ACTTTGTATCAG----------GTGTTGTCAGGTGTCCCAACTG---GTTCTCCCC-ATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGA--CTGAT-----G-CTAGGTATAA--TTAATACCA-----TATCCAAAGCGTT----ATCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGGaa
gi|13 : GTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATA----------TTT--GATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACt
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|14 : tatTGTCATTATAATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTGAA-GTACATGTTAGTttataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTGAA-ATACATGTCAGTACGCTATCGAGT-------------AAATGGTGAAT
gi|16 : aCATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGcagcgtcatcaatatata
gi|17 : ACATTT-ATTCTCTCATTACAT---TAACAT-ATAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------TTTTATAACACGTAGTGTCAATTATGCT
gi|18 : GTGAGGTAGCCTCGGAGTTTATCATTATAA-TTTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTAAa
gi|19 : ccAACAACAGCAATAATATA-GTTT-ATTCTCTCATTACAT---GTTCATTATAAAC-------------A-GAGG---AGAAA-A-AA-TG-------TA-------A----------
gi|2 : TCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGGT---A--CTACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATA----------TTT--GACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----GTT--------------------T---ATTTTAATTAAAATTCCGCGTTCTCGTTGAAACAAATAGTGTG---TTTCT----GAACCCTATTTGTTACAATTACATTTTAAACAAAC------TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAt
gi|20 : CAATATCAACAACAA----CATTT-AATCTCTCATTAAAC---TTACAT-GTCAAA-------------ATGTGG------GG-A-AA-TA-------CA-------
gi|21 : aatat----G---TTTCT----GAACCCACTTCTTTACAATTACATTTTAA--G
gi|22 : tagcgtAATAACAACAACAACAAT-TACATTT-TTTCTCTCATTACAT---TTACAT-Gcatactctgtttccta
gi|3 : ttCAACAACACT-TACATTT-ATTCTCTTATTACAT---TTATAT-GTAAAA-------------ATGAGG---A--AA-A-G--TA-------CA-------A----------ATGTTATAACAA----------GTAGCGTTAATTCTGTT---TG---------TCCTATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGGT---ATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATAATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTA-TGGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTTGGGGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATA----------TTT--GGCGGTGCAGCAAGAAACCGGTGT
gi|4 : CAATAATGATAACAATAAT-AACATTT-ATTCTCTCACTACGT---TAACAT-GTAAAA--------------TGAGG---G--AACATAA-CA-------CATTCTGTTAC---------A----------T----------ATAGTGTCAGATGTGTTGGCTATAAGTCCTCCCTTACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-GG-GTC------CAC--CTTCGTTAGATTCTTGTGGGTAGACCAGTT---A--CGAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATAA-TTTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAAT-AAATAGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCA-T---GTTGCG--TAGGAAAAAGT--CATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTTTAGACGGTGTaattcaacgttaaatgta
gi|5 : aA-------A----------A----------G----------GTAATGTCAATTATATTGGTTG---G-CCTCTCCTATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGGT---A--CTAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACATTTCAATT--A-AA-GCGTCATAAATCAGAGA---AGTGTGAC-ATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTA-TTCGGCTACCTGGGGGAAAACGTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACtg
gi|6 : aCGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAG-T--------------------CTGCGTTCTCGTTGAAA----GGGTGAGCATCTAAATAAATA----G---TGT-------------CTTCGTTACAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT-----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGGtatagaaatcaataattagatat
gi|7 : T-TAAGTTT--TTTTCTCATTACAT---TTACAT-GTAAAAATGAAGGAAAAAAATGAGG---A--AA-A-AA-TA-------CA-------AATGATATAACA----------G----------GTAGTGTCAGTTAGATTAACTG---G-CCTCTCTTATCACATCTA
gi|7 : t-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAtttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|8 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAAT-----G-TGTTTTTTAATTAAAAGTTGGC---GTTTTAGTTGAAA----GTGTGGACATCTAAATAAATA----G---TGTGTTCCAGAATCCACTTCGTTACACTTACATTTTAA--GGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCTATC--ATCCTAC-ATTTTGATATTTA---TTGAAATCGGGTAATTACTg
gi|9 : CAACAACAACAACAACAAT-TAAATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGGGG-A--AA-A-AA-TA-------CA-------ATTTTATAAC-A----------G----------GTAGTGTTTATTGTGTTGGCTA---GTCCTCTCCTGTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACCtaatt
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 2222222222222 111111 1111111 9999999999999999999999999999999999999999 11111 111 111111 3333333333 11 111 222222222222222222222222222222222 2222 22222222222222222 77777777777777777 66666666666 1
lowQualScore : 3 0 3 555 3 0000000000000 444444 3 3 3 1111111 7777777777777777777777777777777777777777 3 0 11111 0 0 5 5 5 66 1 4 777 66 66 0 8 55 2 6 8888 4 3 4 5 1 3 3 0 111 6 1 999 1 1 1 1 0 999999 99 8 5555555555 11 1 1 3 444 1 3 777777777777777777777777777777777 99 1111 4 22 55555555555555555 1 88888888888888888 6 88888888888 6 3 1 1 1 2 1 1 1 1
lowQualScore : . . . ... . ............. ...... . . . ....... ........................................ . . ..... . . . . . .. . . ... .. .. . . .. . . .... . . . . . . . . ... . . ... . . . . . ...... .. . .......... .. . . . ... . . ................................. .. .... . .. ................. . ................. . ........... . . . . . . . . . .
lowQualScore : 6 4 3 888 3 0000000000000 555555 6 6 6 8888888 2222222222222222222222222222222222222222 7 1 44444 2 5 0 0 5 11 9 4 888 11 33 9 9 55 4 5 6666 4 9 7 0 7 0 2 7 777 7 0 222 0 0 0 0 7 222222 22 0 0000000000 00 0 0 8 222 0 2 555555555555555555555555555555555 55 2222 2 88 22222222222222222 0 11111111111111111 7 33333333333 7 3 0 0 0 5 0 0 0 0
consensus : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Reference ( family-3132 ) : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
gi|1 : CAACAACAACAACAACAAT-TACATTT-ATTCCCGCATTACAT---TTAAAG-GTTAAA-------------ATGAGG---A--AA-A-AG-TT-------CA-------A----------A----------G----------AT----TTAATTGTGTTGGATA---GTCATCTCCTATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGGA---A--TTAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTGAA-GTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGG---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATA----------TTT--GATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT-------------------------------------CTCT--TTGAAA----GTGTGCGCATCTAAATAAATA----GAGCTTTGT----GAACCCACTTCGTTATAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAATC-TATGGTTA-GATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGG
gi|10 : AACAACAACAACAACAAC-TACATTT-ATTCTCTCATTACAT---TTACGT-GTAAAA-------------ATTAGG---A--AA-A-AG-TA-------CA-------A----------ATAGTATAGCAG----------GTAGTGTTAATTGTGTTAAATA---ATCCTCTCCTATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGGT---T--CTTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAa
gi|11 : CAACA-CAACAAT-AACATTT-TTTCTCTCATTACAT---TAACAT-GTAAAA-------------ATGAGGGGAA--AA-A-AA-CAGATTTTGTA-------AC---------A----------G----------GCAGTGTCAATTGTGTTTGCTG---ATCCTCTCCTATGACGCCCAGTGTAAACCCAGTCC-----GCG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GGT---A----------GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATGATTTTGAATT--
gi|12 : AACAACAACAATAATA-T-TAAATTTTATTCTCACATTACATAATTTACAT-GTAGAA-------------ATAAGG---G--AA-A-AAGTA-------CA-------A----------ACTTTGTATCAG----------GTGTTGTCAGGTGTCCCAACTG---GTTCTCCCC-ATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGA--CTGAT-----G-CTAGGTATAA--TTAATACCA-----TATCCAAAGCGTT----ATCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGGaa
gi|13 : GTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATA----------TTT--GATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACt
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|14 : tatTGTCATTATAATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTGAA-GTACATGTTAGTttataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTGAA-ATACATGTCAGTACGCTATCGAGT-------------AAATGGTGAAT
gi|16 : aCATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGcagcgtcatcaatatata
gi|17 : ACATTT-ATTCTCTCATTACAT---TAACAT-ATAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------TTTTATAACACGTAGTGTCAATTATGCT
gi|18 : GTGAGGTAGCCTCGGAGTTTATCATTATAA-TTTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTAAa
gi|19 : ccAACAACAGCAATAATATA-GTTT-ATTCTCTCATTACAT---GTTCATTATAAAC-------------A-GAGG---AGAAA-A-AA-TG-------TA-------A----------
gi|2 : TCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGGT---A--CTACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATA----------TTT--GACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----GTT--------------------T---ATTTTAATTAAAATTCCGCGTTCTCGTTGAAACAAATAGTGTG---TTTCT----GAACCCTATTTGTTACAATTACATTTTAAACAAAC------TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAt
gi|20 : CAATATCAACAACAA----CATTT-AATCTCTCATTAAAC---TTACAT-GTCAAA-------------ATGTGG------GG-A-AA-TA-------CA-------
gi|21 : aatat----G---TTTCT----GAACCCACTTCTTTACAATTACATTTTAA--G
gi|22 : tagcgtAATAACAACAACAACAAT-TACATTT-TTTCTCTCATTACAT---TTACAT-Gcatactctgtttccta
gi|3 : ttCAACAACACT-TACATTT-ATTCTCTTATTACAT---TTATAT-GTAAAA-------------ATGAGG---A--AA-A-G--TA-------CA-------A----------ATGTTATAACAA----------GTAGCGTTAATTCTGTT---TG---------TCCTATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGGT---ATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATAATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTA-TGGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTTGGGGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATA----------TTT--GGCGGTGCAGCAAGAAACCGGTGT
gi|4 : CAATAATGATAACAATAAT-AACATTT-ATTCTCTCACTACGT---TAACAT-GTAAAA--------------TGAGG---G--AACATAA-CA-------CATTCTGTTAC---------A----------T----------ATAGTGTCAGATGTGTTGGCTATAAGTCCTCCCTTACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-GG-GTC------CAC--CTTCGTTAGATTCTTGTGGGTAGACCAGTT---A--CGAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATAA-TTTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAAT-AAATAGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCA-T---GTTGCG--TAGGAAAAAGT--CATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTTTAGACGGTGTaattcaacgttaaatgta
gi|5 : aA-------A----------A----------G----------GTAATGTCAATTATATTGGTTG---G-CCTCTCCTATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGGT---A--CTAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACATTTCAATT--A-AA-GCGTCATAAATCAGAGA---AGTGTGAC-ATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTA-TTCGGCTACCTGGGGGAAAACGTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACtg
gi|6 : aCGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAG-T--------------------CTGCGTTCTCGTTGAAA----GGGTGAGCATCTAAATAAATA----G---TGT-------------CTTCGTTACAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT-----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGGtatagaaatcaataattagatat
gi|7 : T-TAAGTTT--TTTTCTCATTACAT---TTACAT-GTAAAAATGAAGGAAAAAAATGAGG---A--AA-A-AA-TA-------CA-------AATGATATAACA----------G----------GTAGTGTCAGTTAGATTAACTG---G-CCTCTCTTATCACATCTA
gi|7 : t-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAtttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|8 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAAT-----G-TGTTTTTTAATTAAAAGTTGGC---GTTTTAGTTGAAA----GTGTGGACATCTAAATAAATA----G---TGTGTTCCAGAATCCACTTCGTTACACTTACATTTTAA--GGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCTATC--ATCCTACA-TTTTGATATTTA---TTGAAATCGGGTAATTACTg
gi|9 : CAACAACAACAACAACAAT-TAAATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGGGG-A--AA-A-AA-TA-------CA-------ATTTTATAAC-A----------G----------GTAGTGTTTATTGTGTTGGCTA---GTCCTCTCCTGTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACCtaatt
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 2222222222222 111111 1111111 9999999999999999999999999999999999999999 11111 111 111111 3333333333 11 111 222222222222222222222222222222222 2222 22222222222222222 77777777777777777 66666666666 1
lowQualScore : 3 0 3 555 3 0000000000000 444444 3 3 3 1111111 7777777777777777777777777777777777777777 3 0 11111 0 0 5 5 5 66 1 4 777 66 66 0 8 55 2 6 8888 4 3 4 5 1 3 3 0 111 6 1 999 1 1 1 1 0 999999 99 8 5555555555 11 1 1 3 444 1 3 777777777777777777777777777777777 99 1111 4 22 55555555555555555 1 88888888888888888 6 88888888888 6 3 1 1 1 2 1 1 1 1
lowQualScore : . . . ... . ............. ...... . . . ....... ........................................ . . ..... . . . . . .. . . ... .. .. . . .. . . .... . . . . . . . . ... . . ... . . . . . ...... .. . .......... .. . . . ... . . ................................. .. .... . .. ................. . ................. . ........... . . . . . . . . . .
lowQualScore : 6 4 3 888 3 0000000000000 555555 6 6 6 8888888 2222222222222222222222222222222222222222 7 1 44444 2 5 0 0 5 11 9 4 888 11 33 9 9 55 4 5 6666 4 9 7 0 7 0 2 7 777 7 0 222 0 0 0 0 7 222222 22 0 0000000000 00 0 0 8 222 0 2 555555555555555555555555555555555 55 2222 2 88 22222222222222222 0 11111111111111111 7 33333333333 7 3 0 0 0 5 0 0 0 0
consensus : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Reference ( family-3132 ) : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
gi|1 : CAACAACAACAACAACAAT-TACATTT-ATTCCCGCATTACAT---TTAAAG-GTTAAA-------------ATGAGG---A--AA-A-AG-TT-------CA-------A----------A----------G----------AT----TTAATTGTGTTGGATA---GTCATCTCCTATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGGA---A--TTAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTGAA-GTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGG---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATA----------TTT--GATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT-------------------------------------CTCT--TTGAAA----GTGTGCGCATCTAAATAAATA----GAGCTTTGT----GAACCCACTTCGTTATAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAATC-TATGGTTA-GATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGG
gi|10 : AACAACAACAACAACAAC-TACATTT-ATTCTCTCATTACAT---TTACGT-GTAAAA-------------ATTAGG---A--AA-A-AG-TA-------CA-------A----------ATAGTATAGCAG----------GTAGTGTTAATTGTGTTAAATA---ATCCTCTCCTATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGGT---T--CTTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAa
gi|11 : CAACA-CAACAAT-AACATTT-TTTCTCTCATTACAT---TAACAT-GTAAAA-------------ATGAGGGGAA--AA-A-AA-CAGATTTTGTA-------AC---------A----------G----------GCAGTGTCAATTGTGTTTGCTG---ATCCTCTCCTATGACGCCCAGTGTAAACCCAGTCC-----GCG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GGT---A----------GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATGATTTTGAATT--
gi|12 : AACAACAACAATAATA-T-TAAATTTTATTCTCACATTACATAATTTACAT-GTAGAA-------------ATAAGG---G--AA-A-AAGTA-------CA-------A----------ACTTTGTATCAG----------GTGTTGTCAGGTGTCCCAACTG---GTTCTCCCC-ATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGA--CTGAT-----G-CTAGGTATAA--TTAATACCA-----TATCCAAAGCGTT----ATCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGGaa
gi|13 : GTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATA----------TTT--GATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACt
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|14 : tatTGTCATTATAATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTGAA-GTACATGTTAGTttataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTGAA-ATACATGTCAGTACGCTATCGAGT-------------AAATGGTGAAT
gi|16 : aCATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGcagcgtcatcaatatata
gi|17 : ACATTT-ATTCTCTCATTACAT---TAACAT-ATAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------TTTTATAACACGTAGTGTCAATTATGCT
gi|18 : GTGAGGTAGCCTCGGAGTTTATCATTATAA-TTTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTAAa
gi|19 : ccAACAACAGCAATAATATA-GTTT-ATTCTCTCATTACAT---GTTCATTATAAAC-------------A-GAGG---AGAAA-A-AA-TG-------TA-------A----------
gi|2 : TCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGGT---A--CTACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATA----------TTT--GACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----GTT--------------------T---ATTTTAATTAAAATTCCGCGTTCTCGTTGAAACAAATAGTGTG---TTTCT----GAACCCTATTTGTTACAATTACATTTTAAACAAAC------TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAt
gi|20 : CAATATCAACAACAA----CATTT-AATCTCTCATTAAAC---TTACAT-GTCAAA-------------ATGTGG------GG-A-AA-TA-------CA-------
gi|21 : aatat----G---TTTCT----GAACCCACTTCTTTACAATTACATTTTAA--G
gi|22 : tagcgtAATAACAACAACAACAAT-TACATTT-TTTCTCTCATTACAT---TTACAT-Gcatactctgtttccta
gi|3 : ttCAACAACACT-TACATTT-ATTCTCTTATTACAT---TTATAT-GTAAAA-------------ATGAGG---A--AA-A-G--TA-------CA-------A----------ATGTTATAACAA----------GTAGCGTTAATTCTGTT---TG---------TCCTATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGGT---ATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATAATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTA-TGGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTTGGGGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATA----------TTT--GGCGGTGCAGCAAGAAACCGGTGT
gi|4 : CAATAATGATAACAATAAT-AACATTT-ATTCTCTCACTACGT---TAACAT-GTAAAA--------------TGAGG---G--AACATAA-CA-------CATTCTGTTAC---------A----------T----------ATAGTGTCAGATGTGTTGGCTATAAGTCCTCCCTTACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-GG-GTC------CAC--CTTCGTTAGATTCTTGTGGGTAGACCAGTT---A--CGAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATAA-TTTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAAT-AAATAGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCA-T---GTTGCG--TAGGAAAAAGT--CATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTTTAGACGGTGTaattcaacgttaaatgta
gi|5 : aA-------A----------A----------G----------GTAATGTCAATTATATTGGTTG---G-CCTCTCCTATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGGT---A--CTAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACATTTCAATT--A-AA-GCGTCATAAATCAGAGA---AGTGTGAC-ATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTA-TTCGGCTACCTGGGGGAAAACGTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACtg
gi|6 : aCGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAG-T--------------------CTGCGTTCTCGTTGAAA----GGGTGAGCATCTAAATAAATA----G---TGT-------------CTTCGTTACAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT-----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGGtatagaaatcaataattagatat
gi|7 : T-TAAGTTT--TTTTCTCATTACAT---TTACAT-GTAAAAATGAAGGAAAAAAATGAGG---A--AA-A-AA-TA-------CA-------AATGATATAACA----------G----------GTAGTGTCAGTTAGATTAACTG---G-CCTCTCTTATCACATCTA
gi|7 : t-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAtttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|8 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAAT-----G-TGTTTTTTAATTAAAAGTTGGC---GTTTTAGTTGAAA----GTGTGGACATCTAAATAAATA----G---TGTGTTCCAGAATCCACTTCGTTACACTTACATTTTAA--GGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCTATC--ATCCTACA-TTTTGATATTTA---TTGAAATCGGGTAATTACTg
gi|9 : CAACAACAACAACAACAAT-TAAATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGGGG-A--AA-A-AA-TA-------CA-------ATTTTATAAC-A----------G----------GTAGTGTTTATTGTGTTGGCTA---GTCCTCTCCTGTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACCtaatt
blockSeqs : A T AAT T ATGAAGGAAAAAA GGAA C T G GATTTTG AATAGTATAGCAG A TAAGT G C T . T A ATA TA GT G CC G T CAT A G G A T G G CTA C C TTT G G T G TCATGT GA T CCATTAATCG TA T G G TTT A A GTGTTTTTTAATTAAAAGTTGGCG AA TTCC C CT GTGTGTTTCT T AGGATACTTTGT G CCTACATTTT C C T A A A T T T C
blockSeqs : . . . . . AGA . . . . AACTTTGTATCAG T AT . . A . C . . . T T . G T TA . T G . T G T . . C TTT G A T G . . . . . A G A A G A TAAAAGTCTGCG CG . G AG GTGTGTTCCA A AACAAACTCTA . . . .
blockSeqs : . . . . . GGA . . . . AATTTTATAACAC A AT . . A . C . . . T . . G T A . T T . T A T . . C TTG G G G G . . . . . T C A C T A GTTTA AG . T GA GTTTCT A T
blockSeqs : . . . . . A . . . . AATGTTATAACAA G GT . . T . T . . . T . . T T T . G G . A G T . . T TGG G G G A . . . . . G . A T GTGT .
blockSeqs : . . . . . G . . . . AATGATATAACAG G GT . . C . C . . . T . . T A T . C G . T . . . . C T . . G . . .
blockSeqs : . . . . . A . . . . ATTTTATAACAG A G . . T . C . . . T . . A . T . G A . . .
blockSeqs : . . . . . A . . . . TTCTGTTACAT G G . . . . . . . . . . . G . A . G . .
blockSeqs : . . . . . G . . . . ACAG . . . . . . . . . . T . . .
blockSeqs : . . . . . A . . . . AAG . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : AATNTTATAACAG*************************** ** TTN GTGTCCT**********
originalCons : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CA-------A----------A----------G----------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATA----G---TTTNT----GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
finalCons : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGAGG---A--AA-A-AA-TA-------CAAATNTTATAACAG---------------------------GTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTNGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATAGTGTCCT----------GAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TACG-TT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 2222222222222 11111 11111 111 111111 3333333333 11 111 222222222222222222222222222222222 2222 44444444444 77777777777777777 66666666666 1
lowQualScore : 3 0 3 555 3 0000000000000 3 11111 1 1 1 3 0 11111 0 0 5 5 5 66 1 4 777 66 66 0 8 55 2 6 8888 4 3 4 5 1 3 3 0 111 6 1 66 3 1 1 1 0 999999 99 8 5555555555 11 1 1 3 444 1 3 777777777777777777777777777777777 99 1111 4 22 33333333333 1 88888888888888888 6 88888888888 6 3 1 1 1 2 1 1 1 1
lowQualScore : . . . ... . ............. . ..... . . . . . ..... . . . . . .. . . ... .. .. . . .. . . .... . . . . . . . . ... . . .. . . . . . ...... .. . .......... .. . . . ... . . ................................. .. .... . .. ........... . ................. . ........... . . . . . . . . . .
lowQualScore : 6 4 3 888 3 0000000000000 6 88888 9 0 4 7 1 44444 2 5 0 0 5 11 9 4 888 11 33 9 9 55 4 5 6666 4 9 7 0 7 0 2 7 777 7 0 77 5 0 0 0 7 222222 22 0 0000000000 00 0 0 8 222 0 2 555555555555555555555555555555555 55 2222 2 88 66666666666 0 11111111111111111 7 33333333333 7 3 0 0 0 5 0 0 0 0
consensus : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGA-GG--A--AAAAATACAAATNTTATAACAGGTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTGGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATAGTG---T---T-CTGAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TAC-GTT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
Reference ( family-3132 ) : CAACAACAACAACAACAAT-TACATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGA-GG--A--AAAAATACAAATNTTATAACAGGTAGTGTCAATTGTGTTGGCTG---GTCCTCTCCTATCACATCCAGTGTATACCCAGTCCGGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGC-TTAA--ACCATGCACACACCGATCTGGACACACACTGNCAGAAGACACGGTGAGGTAGCCTCGGATTTTATCATTATAATTTTGAATT--T-AA-GCGTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGTTGCATAATCAATGAAATAGTGAATAATTATTGGTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTNGGGAAATCGTGCCATATGCACTTGCGGCAAGAATANAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACCGTG-TCATTGATATA----------TTT--GACGGTGTAGCAAGAAGCCGGTGTTAANCATGTTTATAAGGAATTAATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTNATCAGTTCGGTTTCGTTTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAAT-----G-T--------------------C---GTTCTAGTTGAAA----GCGTGCGCATCTAAATAAATAGTG---T---C-CTGAACCCACTTCGTTACAATTACATTTTAA--GGAC------T---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTATAGAGAATC-TAC-GTT--GATGTACGCAGTTTAAAT-AGGTAATTACTAAGGTTNCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTNTATTATGCCTTTATNAGAACTTCTCGGATCTGCATTCCAGGATTGCGTGTACTGNTCAGTCAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTNACNTTTGACTGGTTAATAAATATGTCTAGCCTGCCANCGG
gi|1 : CAACAACAACAACAACAAT-TACATTT-ATTCCCGCATTACAT---TTAAAG-GTTAAA-------------ATGA-GG--A--AAAAGTTCAAAGATT--------------TAATTGTGTTGGATA---GTCATCTCCTATCACATCCAGTGTATACCTAGTCCGGTCTGCA-CACG-GCTGTCAATGGCCATATCGTCATAAGACTCTGGCGTGTAG-CCAGGA---A--TTAATATCGCCGT-TGTCTCCAGC-TTAA--ACCATGCACACACCGATTTGGACACACACTGTCAGAAGACACAGTGATGTAGCCTCGGATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGGAAGAAGTGTGAA-GTACATGTTAATACGTTTTCGGGTTGTACAATCAATGAAA-AGGGAGTAACTATCGGTAGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGG---------GAAAATAGTACCATATGCACTTGCGGTAAGAATATAATCGACAGTGCAAAATACTATTATTTACTATCAA------TTAC--AACCATG-TCATTTATATA----------TTT--GATGGTGTAGCGAGAAACCGGTGTTAATCATGTTTGTAAGGAATTCATTACACTCTTTTATAAGTATGCGTGCAAATTTGCATA--CGTTCATCAGTTTGGTTTCGATTTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTAGTT-------------------------------------CTCT--TTGAAA----GTGTGCGCATCTAAATAAATAGAGCT-T---T-GTGAACCCACTTCGTTATAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACTCATCTCCCTGTTTCTATAGAGAATC-TATGGTTA-GATGTACGCAGTTTAAAT-AGGTAATTACTAAAGTTACGTGGAAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTCTTCTTGAAATGACTGTTTATTATGCCTTTATTAAAACTTCTCAGATCTGCATTCCAGGATTGCGTGTACTGGTCAATTAGTGTCCGCTTGACGGACCTATTTGTAGCTTTGCAGGTAACATTTGATTGGTTAATAAATATGTCTAGCCTGCCAACGG
gi|10 : AACAACAACAACAACAAC-TACATTT-ATTCTCTCATTACAT---TTACGT-GTAAAA-------------ATTA-GG--A--AAAAGTACAAATAGTATAGCAGGTAGTGTTAATTGTGTTAAATA---ATCCTCTCCTATCGCATAGAGTGTATACTCAGTCCAGTCTGCG-CACG-GCTGTCAATGACCAT--CGTCATTAAATTCTTGCGTGTAG-CCAGGT---T--CTTATACCGCCGT-TGTCTCCAGC-TTAA--ACCTCGCACACACCGATCTGGACACACATTAGCAGAAGATACAGTGAGGTAGCCTCGGAa
gi|11 : CAACA-CAACAAT-AACATTT-TTTCTCTCATTACAT---TAACAT-GTAAAA-------------ATGA-GGGGA--AAAAA-ACAGATTTTGTAACAGGCAGTGTCAATTGTGTTTGCTG---ATCCTCTCCTATGACGCCCAGTGTAAACCCAGTCC-----GCG-CACG-GCAGTCATAGACCAT--CGTCAATTGACT-----GT-TAG----GGT---A----------GCCGTGTGTCTCCTAC-CTAA--ACCATGCACACACCGATCAGGACACACACTGGCAGAAGACACGGTGTGGTAGCCTT-GATTTTATCATTATGATTTTGAATT--
gi|12 : AACAACAACAATAATA-T-TAAATTTTATTCTCACATTACATAATTTACAT-GTAGAA-------------ATAAGGG--A--AAAAGTACAAACTTTGTATCAGGTGTTGTCAGGTGTCCCAACTG---GTTCTC-CCCATCTCACTCAGTGTAGACCCAGTCCAGTCAGCA-CATG-ACAGTCAGGGATCAC--CACCATTAGA--CTGAT-----G-CTAGGTATAA--TTAATACCA-----TATCCAAAGCGTT----ATCATGTGCACACCGATCTCAATAAACACTGGTTGAAGACATGGTGAGATAGCCTCGGaa
gi|13 : GTCGGTTCGCCGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCGGCAAGAATATAATTGGCAGTGTGGAATACTATCATTTACCATCAA------TTAT--AACCATG-TCATTGGTATA----------TTT--GATGGTGCAGCAAGAAGCTGGTGTTAAGCATGTTTATAAGGAATTAATTACACt
gi|14 : A--ATCATGCACACACCGATCTGGATACACACTGTCA
gi|14 : tatTGTCATTATAATTTTGATTT--A-AA-GCGTCTTAAGTCAGGGAGGAAGTGTGAA-GTACATGTTAGTttataattttgatttaaagcgtcttaagtcagggaggaagtgtgaagtacatgttagt
gi|15 : tataatcatgcacacaccgatctggatacacacAATT--T-AAAGCTTCTTAAATTAGAGAGGAAGTGTGAA-ATACATGTCAGTACGCTATCGAGT-------------AAATGGTGAAT
gi|16 : aCATATATATGAGAAATTAGTTGCACTCTTTTATAAGTATACTTGCAGATTTGCATATTTGTTATTCAGTTCATTTATGTATTACGAGGcagcgtcatcaatatata
gi|17 : ACATTT-ATTCTCTCATTACAT---TAACAT-ATAAAA-------------ATGA-GG--A--AAAAATACAAATTTTATAACACGTAGTGTCAATTATGCT
gi|18 : GTGAGGTAGCCTCGGAGTTTATCATTATAA-TTTAAATT--TAAA-GCTTCTTAAATAAGTTATGAAGTGTAAa
gi|19 : ccAACAACAGCAATAATATA-GTTT-ATTCTCTCATTACAT---GTTCATTATAAAC-------------A-GA-GG--AGAAAAAATGTAA
gi|2 : TCAATGACCAC--CGTCATTAGACTCTGGCATGTAG-CCAGGT---A--CTACTACCGCCGT-TGTCTCATGC-TTAA--ACCATGCATACACCGATCTGGACA-----------GAGA----GTGAGGTAGCCTCGAATTTTATCATTATAATCTTGAATT--T-AA-GCGTCTTAAATCAGGAAGGAAGTGTGAA-GTACATGTTAGTACGTTATCGGGGTGCATCATCAATGAAATAGTGAATAACTAGTGGTCGGTTCGCTGTGAGTGAAATTAC---ATTA-TTTGGCTACGTTTGGGAAATCGTGCCATATGCACTTGCAGCAAAAATATAATCGACAGTGTGGAATACTATTATTTACTATCGA------TTAC--AACTGTG-TCATTGATATA----------TTT--GACGGTGTGGCAAGAAGCTGGCAATAAGCATGTTTATAAGAAATTAATCACACTCTTTTAGAAGTATGCGTACAAGTTTGCATA--AGTTGATCTGTTTGGTTTCGTTTTGCGAGGACAGCACGCTATGCAGCGCATGTATATCATGTGCGGTTAAAT-----GTT--------------------T---ATTTTAATTAAAATTCCGCGTTCTCGTTGAAACAAATAGTGTGTT---T-CTGAACCCTATTTGTTACAATTACATTTTAAACAAAC------TCTATTTTTATGGAGGTATTTGCCCGTCTCCCTGTTTCTATAt
gi|20 : CAATATCAACAACAA----CATTT-AATCTCTCATTAAAC---TTACAT-GTCAAA-------------ATGT-GG-----GGAAATACA
gi|21 : aatatGTG---T---TTCTGAACCCACTTCTTTACAATTACATTTTAA--G
gi|22 : tagcAATAACAACAACAACAAT-TACATTT-TTTCTCTCATTACAT---TTACAT-Gcatactctgtttccta
gi|3 : ttCAACAACACT-TACATTT-ATTCTCTTATTACAT---TTATAT-GTAAAA-------------ATGA-GG--A--AAAG-TACAAATGTTATAACAAGTAGCGTTAATTCTGTT---TG---------TCCTATCTCATCTTGTGTATGCTCAGTCCGGCCTGCG-CACG-GCTGTCAATGACCAT---------------TGGCGTGTAG-CCAGGT---ATACTTATACCGCTGT-TGTCTCCGGC-TTAA--ACCATGCATACACCGATCTGGACACACACTGTCAAAAGACACAGTGAGGTAGCCTCGGAGTTTATCATTATAATTTTGAATT--T-AA-GACTCTTAAATCAGGGAGGAAGTGTGAA-GTACATGTTAATACATTATCGGGTTGCATAATCAATGAAATAGTGAATAATTA-TGGTCGGTTCGCCATGAGGGAAATTAC---GTTACTTTGGCTACGTTGGGGAAATCGTGCCATTTGCACTTGCAGCAAGAATAGAATGGACAGTATGGAATACAATTTTTTACTATCAA------TTAC--AACAATG-TCAATAATATA----------TTT--GGCGGTGCAGCAAGAAACCGGTGT
gi|4 : CAATAATGATAACAATAAT-AACATTT-ATTCTCTCACTACGT---TAACAT-GTAAAA--------------TGA-GG--G--AACATAACACATTCTGTTACATATAGTGTCAGATGTGTTGGCTATAAGTCCTCCCTTACCA--TCCAGT--ATACCTAGTCCGGTTAGTG-AACG-GG-GTC------CAC--CTTCGTTAGATTCTTGTGGGTAGACCAGTT---A--CGAATACCGCTGT--ATAACCGAC-TTGT--ACCATGTGCACATTGATCTGGATACACACTGACAAATGGTACGGTGAGGTTGCCTTTGATT-----ATTATAA-TTTAAACTCAT-AA-GT-TCTTA---C----------TGTA-----------TAATAGATCATTGAATTAGATAATCAAT-AAATAGTGCATCGTTATTAGTCGGTTCGCCGTTATTGAAATTACCTAATCA-T---GTTGCGTAGGAAAAA----GTCATTTGTACTTGCAGCAGGAGTAGAACTGATA-TGTGAAATACTATGATCTACTATCAATCATGTTTACGAAATCGTATTCATTGATATACCATTAATCGTTTTAGACGGTGTaattcaacgttaaatgta
gi|5 : aAAAAGGTAATGTCAATTATATTGGTTG---G-CCTCTCCTATCACATCCAGCGTATACCCACTCAGGTCTGCG-CATACACCAT-AATGACCAT--CGTCATTAGACTCTGCCGGGTAG-CCAGGT---A--CTAATACCGTTGT--GTCTCCGGC-TTAA--ACCATGCACACACCGGTGTGGACGCACACTGGCAGAAGGCACGGTGAGGTTGTCTAGGATATTATCATTATACATTTCAATT--A-AA-GCGTCATAAATCAGAGA---AGTGTGAC-ATA-ATGTTAGTACGTTATAGGGTAGCATAGTCAATAAAATAGTAAATCATTATTGGTCGTCTCGCCGTGAGTGAAATTAC---ATTA-TTCGGCTACCTGGGGGAAAACGTGCCATATACACTTGCGGGAA-AATAGAATCGACAATGAGGGAGATTATTATTGACTATCGA------TTAC--AACtg
gi|6 : CGTGCAAATTTGCATA--CGTTTATCAATACGGTTTCGTTGTGCGAGGACAGCACATTATGCAGCGCATGTATATCATGTGTGGTTAAATTAAAAG-T--------------------CTGCGTTCTCGTTGAAA----GGGTGAGCATCTAAATAAATAGTG---T---C-----------TTCGTTACAATTACATTTTA-------------T---TTTCTATGGAGGTATTTACCCATCTCCCTGTTTCTATAGAGAAT-----------GATGTACGCAGTTTAATT-AGGTAAAGACTAAGGTTTCGTGGGAGGATTTTCAAGTAGTTTTCAAAGCAAATTGTTTTCTTGAAATGACTGTATATTATGCCTTTATAAGAACTTCTAGGATCTACATTCCAGGATTGCGTGTACTGTTCAGTCAGTGTCCGCTTGACGGACCTATTTATAGTTTTGCAGGTTACTTTTGACTGGTTAATAAATATGTCTAATCTGCCACCGGtatagaaatcaataattagatat
gi|7 : T-TAAGTTT--TTTTCTCATTACAT---TTACAT-GTAAAAATGAAGGAAAAAAATGA-GG--A--AAAAATACAAATGATATAACAGGTAGTGTCAGTTAGATTAACTG---G-CCTCTCTTATCACATCTA
gi|7 : t-GCGTCTTAAATCAGGGAAGAAGTGTGAAAGTACATGTAAGTATGTTATTGGGTTGCATAATAAATGAAATAATGAATAATTATTGGTCGGTTCGCCAAGA-TGAAtttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgtcttaaatcagggaagaagtgtgaaagtacatgtaagtatgttattgggttgcataataaatgaaataatgaataattattggtcggttcgccaagatgaag
gi|8 : tttaagtttttttctcattacatttacatgtaaaaatgaaggaaaaaaatgaggaaaaaatacaaatgatataacaggtagtgtcagttagattaactggcctctcttatcacatctatttgtctcctatggtgtaccatcagggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAGCAAGAAGGCA-TGGTAACGATGTTTGTAAGGTATTAGTAACACTCTTTTATATGTATGCGTGCA--------TA--AGATTATTAGTTCGGTTTCGTTTAGCGAGGACAGCCTATTATGCAGCGAATATATATCATGTATGGTTAAAT-----G-TGTTTTTTAATTAAAAGTTGGC---GTTTTAGTTGAAA----GTGTGGACATCTAAATAAATAGTG---TGTTC-CAGAATCCACTTCGTTACACTTACATTTTAA--GGATACTTTGT---TTTCTATGGAGGTATTTGCCCATCTCCCTGTTTCTCTATC--ATCCTAC-ATTTTGATATTTA---TTGAAATCGGGTAATTACTg
gi|9 : CAACAACAACAACAACAAT-TAAATTT-ATTCTCTCATTACAT---TTACAT-GTAAAA-------------ATGA-GGGGA--AAAAATACAA-TTTTATAACAGGTAGTGTTTATTGTGTTGGCTA---GTCCTCTCCTGTCACATCCAGTGTATACCCAGTCCGGTCTGCGGCACG-GCTGTCAATGACCAT--CGTCATTGGACTCTGGCGTGTAG-CCAGGT---A--CTAATACCGCCGT-TGTCTCCGGCTTTAACCACCATGCACACGCCGATCTGGACACACACTGTCAGAAGACACAGTGAGGTAACCtaatt