lowQualScore : 22222222222222222222222222222222222222222222222222222222222 111111
lowQualScore : 1 222222222 1111 1 111111 111111 1 2222222222222 1 2222 999999999999999999999999999999999999 1 11 1 55555555555555555555555555555555555555555555555555555555555 111111
lowQualScore : 0 4 3 22 333333333 2 33 66 9999 1 77777 4 1 66 111111 33 555555 2 5 2 444 8 2222222222222 0 5555 4 5555 555555555555555555555555555555555555 888 888 4 3 0 3 88 1 6 3 6 5 77777777777777777777777777777777777777777777777777777777777 4 4 999999
lowQualScore : . . . .. ......... . .. .. .... . ..... . . .. ...... .. ...... . . . ... . ............. . .... . .... .................................... ... ... . . . . .. . . . . . ........................................................... . . ......
lowQualScore : 8 0 6 11 999999999 9 99 88 8888 2 00000 8 6 88 111111 99 444444 7 7 7 777 3 9999999999999 4 1111 0 1111 777777777777777777777777777777777777 888 888 5 9 5 7 00 0 7 3 2 5 55555555555555555555555555555555555555555555555555555555555 0 0 000000
consensus : CTGAATTGGCAT-T-TTTTTAC-TT-TAN-T-GGAA--G--ACT-T-TTCCAA-ATTTTTGATCC--CGAATATATA------AA--AGA-TC-TTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TTAGGTTAG-ACGAA-GAT---CTTAA-------ATT-NNTT----GA---ATAT-----CAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGGG-GCAAGGTTAT-GTAACGTTTNATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACNGTTCNACAGGAGGTGTGTCA----AATGTTTTATCA
Reference ( gi|1 ) : CTGAAGTGGCAT-T-TTTTTAT-TT-TAA-T-GGAA--G--ACC-T-TTCCAA-ATTTTTGATAC--CGAATATATA------AA--ACG-TT-TTCTAA-ATAAATC-ATG---ATTTGATCGGGGAGTATGTACAC-------TTATGTTAG-ATAAA-GAG---CTTAA--CA--TATT-GATT----GA---ATAA-----CAATATTTAG---AAT---AAATGCATCCCTAACATACGGCGGT-GCAAGATTAT-GTGACGTTTTATACATAAGA----ACTTTT----TTTT----TTTTAAAAAAAATAACTTTCAAGTTACAAATTAATTTTTGCAAACAGTTCAACAGAAGGTGTGTTATTTTTTTGTTTTATCAAAAAAGAGTGTTTACAGCTCTTTTTGAAACTCTTACATTTTTTTTAAA
gi|2 : CTGAATTGGCAT-T-TTTTTAC-AT-TAA-T-TTGA--G--GTC-TATTTCAA-ATTTTTGATCC--CGAATGTATACATGTAAA--AGA-TC-TGCCAA-ATAATTC-ATG---GTTCGGTCGGGGAGTATTTACATGTACAAATTATGTAAA-ACGAG-AAT---CTTAA-------ATT-TCTT----GA---ATAAAAAATCAGTATTTAG---AAT---AAATGCATCGATAAGATATGACGGG-TCAACGTTAT-GAAACGTTTAATACA-AAAA----A
gi|18 : gCTGAATTGGCAT-T-TCTTTACATT-TAT-T-GGAA--G--ACT-T-TTCCAA-ATGTTT-ATCC--AGAACAT---------AA--ATG-TT-
gi|12 : taCTAAATTGGCAT-TATTTTTACATT-TGT-T-GGAA--G--ACA-T-TTCCAA--TATTTGATCA--TGACTATATA------AA--AGA-TG-TT-TAACATAGCTC-ATG---GTTTGaaac
gi|8 : caCTGAATTGGCATCT-TTTTTAC-CTGTAT-T-GGAA--G--A---T-T-------------ATCC--CAAATACATA------AA--AGA-TC-GTCTAA-ACATTTC-ATGAGTATTCGGCCGGGAAGTACATA-----------TAGGTTAA-ACGAG-GAC---CTTAtgtttgttgggaga
gi|5 : caTGAATTGACAT-T-TTTACA------AG-T-ACAA--GCGACC-TATTCAAA-ACTTTTGATCC--TGAACATATT------AA--AGA-TC-TTCTGA-ATAAGTCGAT----ATTTGGTCGGGGAGTAT----AC-------TTAGGTTTG-ATAAG-GA------TAA---A-----T-GGTT----AA---A---------------------AAT---AAATGCATCCCAAAGATACGACGGG-GTAAGATTAT-GTAACGTTTGATAtaccttatttataagcgttcagtgtttagtaca
gi|16 : aAAGTGTCAT-T-TTC--AC-CT-TCA-TTAGAA--G--ATT-A-TTTCAA-ACT---GATCC--CGA-TGTATA------AA--ATA-TC-TTCTAA-ATAATTC-CTG---ATTTGaacacttactata
gi|7 : TGGCAT-T-TTTTAAA-TT-CA--T-TGAA--G--ACTAT-TTC----ATTTTC---AC--CGAATTTATA------AA--AGA-TC-ATCTAA-ACAATTC-ATG---ATTTAGTCGGTTAGAATATACAT-------TAAGGTTAG-ACGAA--AT---CTTAA-------ATT-TCTT----GAAACATAT-----TAGTATTTAG---AAT---AGATGCGTACATAAGATA
gi|3 : tgcatTGGCAT-T-TTTATGT-TT-AAA-G-GGTACTGT-ATC-T-ATTTA-----TTTAATACCTCGAATATCTG------AATGGCG-TT-T--TAA-ATAATTC-GTG---ATTTAGTTTTGGAGTATACAAAT-------TTAGGTCAG-ATAGA-AAC---TTTAA---ATTTCTT-AAAT----GA---ATAT-----TGGTTTTTAA---AGA---AAATGCATCCTTAAGATACAAAGGTAGCAAGGTCGTAGTGATG
gi|13 : atatatTGGCAT-G-TTTTT------------GGAA--G--ACA-A-TTCCATTGTTTTTGATCC--CGAATATAT-------AA--ACGATC-TTCAAA-ATAACTC-ATG---ATTTGGTCGat
gi|15 : ttattgatGCAT-T-TTTA-AC-TT-TAT-T-GGAA--G--GC--T-ACCTAA-ATCTTT--TACA-CGAATGTATA------AC--AGA-TG-TTCTAA-ATAATTC-ATG---ATTTGTTCaccacacttagaacta
gi|14 : -TTTTTAC-CT-TAACT-GGAA--G--AC----TTCCAA-ATGTATGAT-C--CGAAGATATA------AA--AGA-TC-ATCTAA-ATATTTC-ATG---ATTAG-TCGGGt
gi|17 : aattatcaTTTAT-TT--------GAA--G--ACT-G-TTTCAA-AATTTAGATCC--TGAATATATAT-----AT--ATA-TA-TTCTAA-ATAATTC-ATG---ATT
gi|6 : cacc-TT-TAT-T-GGAA--G--ACT-A-GTCGAA-ACCTTTGACCC--CGAATATATA------AA--ATA-TG-TTCTGA-ATATTTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TGAGTTTAG-ATGAA-GAT---ATTAAATC---TCTT-AAAT----GG---ATAT-----TAGTATTTAATATAAT---AACTGCATCACTAGTAAACGGC
gi|11 : tgtttaacc-T-GGAA--G--ACT-A-TTCCAG-GATGTGAATCC--TTAACATATA------AA--A-G-CTATTTTGA-ATAACTC-CAG---ATTTGGTCGGGGAGTATGCACAT-------TTAGGTTAG-ATGAA-GAT---CTGAA---A--TATTCCATTC---GA---ATAa
gi|9 : cCTAC-ATAATTC-ATG---ATTTGGACAGGGAGTATATA----------TTTTTTTAACATAGACGAGAATCTTAA-------ATT-TCTT----GA---ATT------C--TATTCAG---AAT---AAATACACACATAAGATACGACGGG-GCAAGGTTAC-GTAACGTTTTATA
gi|10 : -ATAACTC-AAG---ATTTGGCCGGGGAGTGTATACAC-------TTAAGTTAG-------GAT---CTCAA-------ATT-TCTTAAAAGA---ATAT-----CAGTATTTAA---AAT---AAATGCATCCATAGGAAACGACGAG-GCAAGGTTAT-GTAACGTTAAATAC
gi|4 : TGATCGGAGAGTATAAAAAA-------ATAGGTTTG--TGGA-GAAT--CTTGA-------ATT--ACT-----A---ACAT-----CAGTATTTAG---AGTTAAAAAAACA---CTAAGAGACGACGGA-GCG-GATTGT-ACATCGTTTTATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACTGTTCTATAGGAAGTGTATTAt
gi|21 : GCAAACAGTTCAACAGAAGGTGTGTCA----AATGTTTTATCA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TCACTGAATTAGCATATTTTACAATTGTTGGAAGACCATTCCGATATTTTAAACTGAGACTATAT
Unaligned ( gi|20 ): CACTGAATTGGCATTTTTTACAAGGATAGGAAGACTATACCAATTTTTTTATCCGGATTAT
Alignments
lowQualScore : 111111 11 111111 1111111 2222222222222222222222 1111 2222 2222 888888888 333 333333
lowQualScore : 3 2 2 333333 2 2 44 2 2 55 22 66666 1 33 0 111111 1 2 2 444 0 2 1111111 55 1 0 0 666 8888888 22 2222222222222222222222 777 777 1 5 1 7 5555 4444 3333 000000000 4 555 1 1 0 0 666666
lowQualScore : . . . ...... . . .. . . .. .. ..... . .. . ...... . . . ... . . ....... .. . . . ... ....... .. ...................... ... ... . . . . .... .... .... ......... . ... . . . . ......
lowQualScore : 1 9 9 000000 5 5 22 4 4 66 88 66666 4 44 2 111111 9 5 5 444 5 8 8888888 00 8 4 4 444 2222222 00 8888888888888888888888 000 888 0 7 0 3 8888 0000 0000 000000000 0 000 0 0 7 7 333333
consensus : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-AT-T-G-GAAG--ACTA-TTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T----TNCT----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
Reference ( family-291 ) : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-AN-T-G-GAAG--ACTT-TTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAAGATCTTAA---A--T----TNNT----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACNGTTCNACAGGAGGTGTGTCA----AATGTTTTATCA
gi|1 : CTGAAGTGGCAT-T-TTTTTA--T-T-T-T-AA-T-G-GAAG--ACCT-TTCCAA-ATT-TTTGAT--ACCGAATATATA------AAACGTTTTCTAA-ATAAATC-ATG---ATTTGATCGGGGAGTATGTACAC-------TT--ATGTTAGATAAAGAGCTTAACATA--T----TGAT----T----GA---ATA-----ACAATATTTAG---AAT---AAATGCATCCCTAACATACGGCGG-TGCAAGATTATGTGACGTTTTATACATAAGA----ACTTTT----TTTT----TTTTAAAAAAAATAACTTTCAAGTTACAAATTAATTTTTGCAAACAGTTCAACAGAAGGTGTGTTATTTTTTTGTTTTATCA
gi|10 : -ATAACTC-AAG---ATTTGGCCGGGGAGTGTATACAC-------TT--AAGTTAG-----GATCTCAA---A--T----TTCT----TAAAAGA---ATA-----TCAGTATTTAA---AAT---AAATGCATCCATAGGAAACGACGA-GGCAAGGTTATGTAACGTTAAATACaaaaagagtgtttacagctctttttgaaactcttacattttttttaaa
gi|11 : -T-G-GAAG--ACTA-TTCCAG-GAT-GTGAAT--CCTTAACATATA------AAAGCTATTTTGA-ATAACTC-CAG---ATTTGGTCGGGGAGTATGCACAT-------TT--AGGTTAGATGAAGATCTGAA---A--TATTCCATT----C----GA---ATA-----t
gi|12 : cCTAAATTGGCAT-TATTTTTA--CAT-T-T-GT-T-G-GAAG--ACAT-TTCCAA--TA-TTTGAT--CATGACTATATA------AAAGATGTT-TAACATAGCTC-ATG---GTTTG
gi|13 : caATTGGCAT-G-TTTTT----------------G-GAAG--ACAA-TTCCATTGTT-TTTGAT--CCCGAATATATA------AACGATCTTCAAA-ATAACTC-ATG---ATTTGGTCGtgtttgttgggaga
gi|14 : ttattgAATTATCAT-T-TTT--A--C-C-T-T-AACT-G-GAAG--ACTT---CCAA-ATG-TATGAT--CC-GAAGATATA------AAAGATCATCTAA-ATATTTC-ATG---A-TTAGTCGGGaccacacttagaacta
gi|15 : GCAT-T-TTTA-A--C-T-T-T-AT-T-G-GAAG--GCTA-C-CTAA-ATC-TTTTA---CACGAATGTATA------ACAGATGTTCTAA-ATAATTC-ATG---ATTTGTTC
gi|16 : -TTTTCA--C-C-T-TCAT-T-A-GAAG--ATTA-TTTCAA-ACT----GAT--CCCGA-TGTATA------AAATATCTTCTAA-ATAATTC-CTG---ATTTGt
gi|17 : aagtgtca--C-T-T-T-AT-T-T-GAAG--ACTG-TTTCAA-AAT-TTAGAT--CCTGAATATATAT-----ATATATATTCTAA-ATAATTC-ATG---ATT
gi|18 : cacCTGAATTGGCAT-T-TCTTTA--CAT-T-T-AT-T-G-GAAG--ACTT-TTCCAA-ATG-TTT-AT--CCAGAACATA
gi|19 : taCTGAATTAGCAT-A-TTTT-A--C-AAT-T-GT-T-G-GAAG--ACCA-TTCCGATATT-TTaatgttaaac
gi|2 : tcaCTGAATTGGCAT-T-TTTTTA--C-A-T-T-AA-T-TTGAGG--TCTA-TTTCAA-ATT-TTTGAT--CCCGAATGTATACATGTAAAAGATCTGCCAA-ATAATTC-ATG---GTTCGGTCGGGGAGTATTTACATGTACAAATT--ATGTAAAACGAGAATCTTAA---A--T----TTCT----T----GA---ATAAAAAATCAGTATTTAG---AAT---AAATGCATCGATAAGATATGACGG-GTCAACGTTATGAAACGTTTAATACA-AAAAAaaactgagactatat
gi|20 : gCTGAATTGGCA--T-TTTTTA--C-A-A-G-GA-TAG-GAAG--ACTA-TACCAA-TTT-TTTTAT--CCGGATTAT
gi|21 : caGCAAACAGTTCAACAGAAGGTGTGTCA----AATGTTTTATCA
gi|3 : ATTGGCAT-T-TTTATG----T-T-T-AA-A-G-G--GT-ACTG-TATCTA-TTTATTTAATACCTCGAATATCTG------AATGGCGTTTTAA-ATAATTC-GTG---ATTTAGTTTTGGAGTATACAAAT-------TT--AGGTCAGATAGAAACTTTAA---A--T----TTCTTAAAT----GA---ATA-----TTGGTTTTTAA---AGA---AAATGCATCCTTAAGATACAAAGGTAGCAAGGT
gi|4 : atatTGATCGGAGAGTATAAAAAA-------AT--AGGTTTGTGGAGAATCTTGA---A--T----TACT----------A---ACA-----TCAGTATTTAG---AGTTAAAAAAACA---CTAAGAGACGACGG-AGCG-GATTGTACATCGTTTTATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACTGTTCTATAGGAAGTGTATTA----cgtagtgatgat
gi|5 : TGAATTGACAT-T-TTTACA----------AG-T-A-CAAGCGACCTATTCAAA-ACT-TTTGAT--CCTGAACATATT------AAAGATCTTCTGA-ATAAGTCGAT----ATTTGGTCGGGGAGTAT----AC-------TT--AGGTTTGATAAGGA---TAA---A-------TGGT----T----AA---A---------------------AAT---AAATGCATCCCAAAGATACGACGG-GGTAAGATTATGTAACGTTTGATA
gi|6 : aTTTAACC-T-T-T-AT-T-G-GAAG--ACTA-GTCGAA-ACC-TTTGAC--CCCGAATATATA------AAATATGTTCTGA-ATATTTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TG--AGTTTAGATGAAGATATTAA---A--T----CTCTTAAAT----GG---ATA-----TTAGTATTTAATATAAT---AACTGCATCACTAGTAAACGGCaacacttactata
gi|7 : tgTGCATTGGCAT-T-TTTTAA--A-T-T-C-AT-T-G--AAG--ACTA-TTTCA----T-TTTCA----CCGAATTTATA------AAAGATCATCTAA-ACAATTC-ATG---ATTTAGTCGGTTAGAATATACAT-------TA--AGGTTAGACGAA-ATCTTAA---A--T----TTCT----T----GAAACATA-----TTAGTATTTAG---AAT---AGATGCGTACATAAGATAa
gi|8 : CTGAATTGGCATCT-TTTTTA--C-C-TGT-AT-T-G-GAAG--ATT-----------------AT--CCCAAATACATA------AAAGATCGTCTAA-ACATTTC-ATGAGTATTCGGCCGGGAAGTACATA-----------T--AGGTTAAACGAGGACCTTAT---ACCT----TATT----T---------ATAAGCGTTCAGTGTTTAG---
gi|9 : caCTAC-ATAATTC-ATG---ATTTGGACAGGGAGTATATATTT-------TTTTAACATAGACGAGAATCTTAA---A--T----TTCT----T----GA---AT------TC--TATTCAG---AAT---AAATACACACATAAGATACGACGG-GGCAAGGTTACGTAACGTTTTATAtaca
Alignments
lowQualScore : 111111 111111 1111111 2222222222222222222222 1111 2222 2222 333333333 222 333333
lowQualScore : 3 2 2 555555 2 2 5 777 2 4 2 1 33 0 111111 1 2 2 444 0 2 1111111 55 1 2 0 666 55 3 1 666 2222222222222222222222 777 777 1 5 1 7 5555 4444 3333 888888888 1 111 000000
lowQualScore : . . . ...... . . . ... . . . . .. . ...... . . . ... . . ....... .. . . . ... .. . . ... ...................... ... ... . . . . .... .... .... ......... . ... ......
lowQualScore : 1 9 9 555555 5 5 0 444 4 7 4 4 44 2 111111 9 5 5 444 5 8 8888888 00 8 6 4 444 00 6 0 444 8888888888888888888888 000 888 0 7 0 3 8888 0000 0000 000000000 0 555 333333
consensus : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTC---T----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
Reference ( family-291 ) : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TNC---T----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
gi|1 : CTGAAGTGGCAT-T-TTTTTA--T-T-T-T-A-ATGGAAG---AC-CTTTCCAA-ATT-TTTGAT--ACCGAATATATA------AAACGTTTTCTAA-ATAAATC-ATG---ATTTGATCGGGGAGTATGTACAC-------TT--ATGTTAGATAAAGAGCTTAACATA--T-TGA---T----T----GA---ATA-----ACAATATTTAG---AAT---AAATGCATCCCTAACATACGGCGG-TGCAAGATTATGTGACGTTTTATACATAAGA----ACTTTT----TTTT----TTTTAAAAAAAATAACTTTCAAGTTACAAATTAATTTTTGCAAACAGTTCAACAGAAGGTGTGTTATTTTTTTGTTTTATCA
gi|10 : -ATAACTC-AAG---ATTTGGCCGGGGAGTGTATACAC-------TT--AAGTTAG-----GATCTCAA---A--T-TTC---T----TAAAAGA---ATA-----TCAGTATTTAA---AAT---AAATGCATCCATAGGAAACGACGA-GGCAAGGTTATGTAACGTTAAATACaaaaagagtgtttacagctctttttgaaactcttacattttttttaaa
gi|11 : TGGAAG---AC-TATTCCAG-GAT-GTGAAT--CCTTAACATATA------AAAGCTATTTTGA-ATAACTC-CAG---ATTTGGTCGGGGAGTATGCACAT-------TT--AGGTTAGATGAAGATCTGAA---A--TATTCCATT----C----GA---ATA-----t
gi|12 : cCTAAATTGGCAT-TATTTTTA--CAT-T-T-G-TTGGAAG---AC--ATTTCCA-ATA-TTTGAT--CATGACTATATA------AAAGATGTT-TAACATAGCTC-ATG---GTTTG
gi|13 : caATTGGCAT-G-TTTTT---------------GGAAG---AC-AATTCCATTGTT-TTTGAT--CCCGAATATATA------AACGATCTTCAAA-ATAACTC-ATG---ATTTGGTCGtgtttgttgggaga
gi|14 : ttattgAATTATCAT-T-TTT--A--C-C-T-T-AACTGGAAG---AC-T--TCCAA-ATG-TATGAT--CC-GAAGATATA------AAAGATCATCTAA-ATATTTC-ATG---A-TTAGTCGGGaccacacttagaacta
gi|15 : GCAT-T-TTTA-A--C-T-T-T-A-TTGGAAG---GC-TAC-CTAA-ATC-TTTTA---CACGAATGTATA------ACAGATGTTCTAA-ATAATTC-ATG---ATTTGTTC
gi|16 : -TTTTCA--C-C-T-TCA-TTAGAAG---AT-TATTTCAA-ACT----GAT--CCCGA-TGTATA------AAATATCTTCTAA-ATAATTC-CTG---ATTTGt
gi|17 : aagtgtca--C-T-T-T-A-TTTGAAG---AC-TGTTTCAA-AAT-TTAGAT--CCTGAATATATAT-----ATATATATTCTAA-ATAATTC-ATG---ATT
gi|18 : cacCTGAATTGGCAT-T-TCTTTA--CAT-T-T-A-TTGGAAG---AC-TTTTCCAA-ATG-TTT-AT--CCAGAACATA
gi|19 : taCTGAATTAGCAT-A-TTTT-A--C-AAT-T-G-TTGGAAG---AC-CATTCCGATATT-TTaatgttaaac
gi|2 : tcaCTGAATTGGCAT-T-TTTTTA--C-A-T-T-AATTTGAGG---TC-TATTTCAA-ATT-TTTGAT--CCCGAATGTATACATGTAAAAGATCTGCCAA-ATAATTC-ATG---GTTCGGTCGGGGAGTATTTACATGTACAAATT--ATGTAAAACGAGAATCTTAA---A--T-TTC---T----T----GA---ATAAAAAATCAGTATTTAG---AAT---AAATGCATCGATAAGATATGACGG-GTCAACGTTATGAAACGTTTAATACA-AAAAAaaactgagactatat
gi|20 : gCTGAATTGGCA--T-TTTTTA--CAA-G-G-A-TAGGAAG---AC-TATACCAA-TTT-TTTTAT--CCGGATTAT
gi|21 : caGCAAACAGTTCAACAGAAGGTGTGTCA----AATGTTTTATCA
gi|3 : ATTGGCAT-T-TTTATG----T-T-T-A-----AAGGGTAC-TGTATCTA-TTTATTTAATACCTCGAATATCTG------AATGGCGTTTTAA-ATAATTC-GTG---ATTTAGTTTTGGAGTATACAAAT-------TT--AGGTCAGATAGAAACTTTAA---A--T-TTC---TTAAAT----GA---ATA-----TTGGTTTTTAA---AGA---AAATGCATCCTTAAGATACAAAGGTAGCAAGGT
gi|4 : atatTGATCGGAGAGTATAAAAAA-------AT--AGGTTTGTGGAGAATCTTGA---A--T-TAC---T----------A---ACA-----TCAGTATTTAG---AGTTAAAAAAACA---CTAAGAGACGACGG-AGCG-GATTGTACATCGTTTTATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACTGTTCTATAGGAAGTGTATTA----cgtagtgatgat
gi|5 : TGAATTGACAT-T-TTTACA----------A-GTACAAGCG-ACCTATTCAAA-ACT-TTTGAT--CCTGAACATATT------AAAGATCTTCTGA-ATAAGTCGAT----ATTTGGTCGGGGAGTAT----AC-------TT--AGGTTTGATAAGGA---TAA---A----TGG---T----T----AA---A---------------------AAT---AAATGCATCCCAAAGATACGACGG-GGTAAGATTATGTAACGTTTGATA
gi|6 : aTTTAACC-T-T-T-A-TTGGAAG---AC-TAGTCGAA-ACC-TTTGAC--CCCGAATATATA------AAATATGTTCTGA-ATATTTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TG--AGTTTAGATGAAGATATTAA---A--T-CTC---TTAAAT----GG---ATA-----TTAGTATTTAATATAAT---AACTGCATCACTAGTAAACGGCaacacttactata
gi|7 : tgTGCATTGGCAT-T-TTTTAA--A-T-T-C-A-TTG-AAG---AC-TATTTCA----T-TTTCA----CCGAATTTATA------AAAGATCATCTAA-ACAATTC-ATG---ATTTAGTCGGTTAGAATATACAT-------TA--AGGTTAGACGA-AATCTTAA---A--T-TTC---T----T----GAAACATA-----TTAGTATTTAG---AAT---AGATGCGTACATAAGATAa
gi|8 : CTGAATTGGCATCT-TTTTTA--C-C-TGT-A-TTGGAAG---AT-TAT------------------CCCAAATACATA------AAAGATCGTCTAA-ACATTTC-ATGAGTATTCGGCCGGGAAGTACATA-----------T--AGGTTAAACGAGGACCTTAT---ACCT-TAT---T----T---------ATAAGCGTTCAGTGTTTAG---
gi|9 : caCTAC-ATAATTC-ATG---ATTTGGACAGGGAGTATATATTT-------TTTTAACATAGACGAGAATCTTAA---A--T-TTC---T----T----GA---AT------TC--TATTCAG---AAT---AAATACACACATAAGATACGACGG-GGCAAGGTTACGTAACGTTTTATAtaca
Alignments
lowQualScore : 111111 111111 1111111 2222222222222222222222 1111 2222 2222 333333333 222 333333
lowQualScore : 3 2 2 555555 2 2 5 777 2 4 2 1 33 0 111111 1 2 2 444 0 2 1111111 55 1 2 0 666 55 3 0 666 5555555555555555555555 777 777 1 5 1 7 5555 4444 3333 888888888 1 111 000000
lowQualScore : . . . ...... . . . ... . . . . .. . ...... . . . ... . . ....... .. . . . ... .. . . ... ...................... ... ... . . . . .... .... .... ......... . ... ......
lowQualScore : 1 9 9 555555 5 5 0 444 4 7 4 4 44 2 111111 9 5 5 444 5 8 8888888 00 8 6 4 444 00 6 1 444 7777777777777777777777 000 888 0 7 0 3 8888 0000 0000 000000000 0 555 333333
consensus : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTC---T----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
Reference ( family-291 ) : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTC---T----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
gi|1 : CTGAAGTGGCAT-T-TTTTTA--T-T-T-T-A-ATGGAAG---AC-CTTTCCAA-ATT-TTTGAT--ACCGAATATATA------AAACGTTTTCTAA-ATAAATC-ATG---ATTTGATCGGGGAGTATGTACAC-------TT--ATGTTAGATAAAGAGCTTAACATA--T-TGA---T----T----GA---ATA-----ACAATATTTAG---AAT---AAATGCATCCCTAACATACGGCGG-TGCAAGATTATGTGACGTTTTATACATAAGA----ACTTTT----TTTT----TTTTAAAAAAAATAACTTTCAAGTTACAAATTAATTTTTGCAAACAGTTCAACAGAAGGTGTGTTATTTTTTTGTTTTATCA
gi|10 : -ATAACTC-AAG---ATTTGGCCGGGGAGTGTATACAC-------TT--AAGTTAG-----GATCTCAA---A--T-TTC---T----TAAAAGA---ATA-----TCAGTATTTAA---AAT---AAATGCATCCATAGGAAACGACGA-GGCAAGGTTATGTAACGTTAAATACaaaaagagtgtttacagctctttttgaaactcttacattttttttaaa
gi|11 : TGGAAG---AC-TATTCCAG-GAT-GTGAAT--CCTTAACATATA------AAAGCTATTTTGA-ATAACTC-CAG---ATTTGGTCGGGGAGTATGCACAT-------TT--AGGTTAGATGAAGATCTGAA---A--TATTCCATT----C----GA---ATA-----t
gi|12 : cCTAAATTGGCAT-TATTTTTA--CAT-T-T-G-TTGGAAG---AC--ATTTCCA-ATA-TTTGAT--CATGACTATATA------AAAGATGTT-TAACATAGCTC-ATG---GTTTG
gi|13 : caATTGGCAT-G-TTTTT---------------GGAAG---AC-AATTCCATTGTT-TTTGAT--CCCGAATATATA------AACGATCTTCAAA-ATAACTC-ATG---ATTTGGTCGtgtttgttgggaga
gi|14 : ttattgAATTATCAT-T-TTT--A--C-C-T-T-AACTGGAAG---AC-T--TCCAA-ATG-TATGAT--CC-GAAGATATA------AAAGATCATCTAA-ATATTTC-ATG---A-TTAGTCGGGaccacacttagaacta
gi|15 : GCAT-T-TTTA-A--C-T-T-T-A-TTGGAAG---GC-TAC-CTAA-ATC-TTTTA---CACGAATGTATA------ACAGATGTTCTAA-ATAATTC-ATG---ATTTGTTC
gi|16 : -TTTTCA--C-C-T-TCA-TTAGAAG---AT-TATTTCAA-ACT----GAT--CCCGA-TGTATA------AAATATCTTCTAA-ATAATTC-CTG---ATTTGt
gi|17 : aagtgtca--C-T-T-T-A-TTTGAAG---AC-TGTTTCAA-AAT-TTAGAT--CCTGAATATATAT-----ATATATATTCTAA-ATAATTC-ATG---ATT
gi|18 : cacCTGAATTGGCAT-T-TCTTTA--CAT-T-T-A-TTGGAAG---AC-TTTTCCAA-ATG-TTT-AT--CCAGAACATA
gi|19 : taCTGAATTAGCAT-A-TTTT-A--C-AAT-T-G-TTGGAAG---AC-CATTCCGATATT-TTaatgttaaac
gi|2 : tcaCTGAATTGGCAT-T-TTTTTA--C-A-T-T-AATTTGAGG---TC-TATTTCAA-ATT-TTTGAT--CCCGAATGTATACATGTAAAAGATCTGCCAA-ATAATTC-ATG---GTTCGGTCGGGGAGTATTTACATGTACAAATT--ATGTAAAACGAGAATCTTAA---A--T-TTC---T----T----GA---ATAAAAAATCAGTATTTAG---AAT---AAATGCATCGATAAGATATGACGG-GTCAACGTTATGAAACGTTTAATACA-AAAAAaaactgagactatat
gi|20 : gCTGAATTGGCA--T-TTTTTA--CAA-G-G-A-TAGGAAG---AC-TATACCAA-TTT-TTTTAT--CCGGATTAT
gi|21 : caGCAAACAGTTCAACAGAAGGTGTGTCA----AATGTTTTATCA
gi|3 : ATTGGCAT-T-TTTATG----T-T-T-A-----AAGGGTAC-TGTATCTA-TTTATTTAATACCTCGAATATCTG------AATGGCGTTTTAA-ATAATTC-GTG---ATTTAGTTTTGGAGTATACAAAT-------TT--AGGTCAGATAGAAACTTTAA---A--T-TTC---TTAAAT----GA---ATA-----TTGGTTTTTAA---AGA---AAATGCATCCTTAAGATACAAAGGTAGCAAGGT
gi|4 : atatTGATCGGAGAGTATAAAAAA-------AT--AGGTTTGTGGAGAATCTTGA---A--T-TAC---T----------A---ACA-----TCAGTATTTAG---AGTTAAAAAAACA---CTAAGAGACGACGG-AGCG-GATTGTACATCGTTTTATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACTGTTCTATAGGAAGTGTATTA----cgtagtgatgat
gi|5 : TGAATTGACAT-T-TTTACA----------A-GTACAAGCG-ACCTATTCAAA-ACT-TTTGAT--CCTGAACATATT------AAAGATCTTCTGA-ATAAGTCGAT----ATTTGGTCGGGGAGTAT----AC-------TT--AGGTTTGATAAGGA---TAA---A---------------T----G-----------------GTTAAA---AAT---AAATGCATCCCAAAGATACGACGG-GGTAAGATTATGTAACGTTTGATA
gi|6 : aTTTAACC-T-T-T-A-TTGGAAG---AC-TAGTCGAA-ACC-TTTGAC--CCCGAATATATA------AAATATGTTCTGA-ATATTTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TG--AGTTTAGATGAAGATATTAA---A--T-CTC---TTAAAT----GG---ATA-----TTAGTATTTAATATAAT---AACTGCATCACTAGTAAACGGCaacacttactata
gi|7 : tgTGCATTGGCAT-T-TTTTAA--A-T-T-C-A-TTG-AAG---AC-TATTTCA----T-TTTCA----CCGAATTTATA------AAAGATCATCTAA-ACAATTC-ATG---ATTTAGTCGGTTAGAATATACAT-------TA--AGGTTAGACGA-AATCTTAA---A--T-TTC---T----T----GAAACATA-----TTAGTATTTAG---AAT---AGATGCGTACATAAGATAa
gi|8 : CTGAATTGGCATCT-TTTTTA--C-C-TGT-A-TTGGAAG---AT-TAT------------------CCCAAATACATA------AAAGATCGTCTAA-ACATTTC-ATGAGTATTCGGCCGGGAAGTACATA-----------T--AGGTTAAACGAGGACCTTAT---ACCT-TAT---T----T---------ATAAGCGTTCAGTGTTTAG---
gi|9 : caCTAC-ATAATTC-ATG---ATTTGGACAGGGAGTATATATTT-------TTTTAACATAGACGAGAATCTTAA---A--T-TTC---T----T----GA---AT------TC--TATTCAG---AAT---AAATACACACATAAGATACGACGG-GGCAAGGTTACGTAACGTTTTATAtaca
blockSeqs : C A T ACCT G C A GGT C T A A AC CATGTA A C G AGT C GTACAAA TT T A . CC A CAT TGAATAAAAAA TAT TAA A T A T AATG GAAA ACCC . T . AA
blockSeqs : . . T CAT . . A CG . T . G . T G . . . C . . C G . . . . TAAAAGAATA . . A . A .
blockSeqs : . . C CAT . . . . . . . G . . C . . . C . . T A . . . . TAAATGAATA . . T . T
blockSeqs : . . T CAA . . . . . . . G . . C . . . A . . G G . . . . TAAATGGATA . . C . G
blockSeqs : . . T CAA . . . . . . . T . . G . . . A . . T G . . . . TGAAACATA . . C . T
blockSeqs : . . T CC . . . . . . . G . . C . . . C . . T A . . . . TATAAGCGT . . C .
blockSeqs : . . T CT . . . . . . . G . . A . . . C . . C G . . . . CGAATA . . A
blockSeqs : . . C CC . . . . . . . G . . C . . . T . . C G . . . . TGAAT . . A
blockSeqs : . . T CT . . . . . . . T . . G . . . . . . C . . . . . AACA .
blockSeqs : . . A CA . . . . . . . A . . C . . . . . . . . . . . . TG
blockSeqs : . . T AT . . . . . . . G . . G . . .
blockSeqs : . . . CC . . . . . . . G . . C . . .
blockSeqs : . . T . . . . . . . C . . C . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : *** TAAAGAATA*************
originalCons : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTC---T----T----GA---ATA-----TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
finalCons : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTC---TTAAAGAATA-------------TCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
Alignments
lowQualScore : 111111 111111 1111111 2222222 1111 2222 2222 333333333 222 333333
lowQualScore : 3 2 2 555555 2 2 5 777 2 4 2 1 33 0 111111 1 2 2 444 0 2 1111111 55 1 2 0 666 55 3 0 4444444 3 777 777 1 5 1 7 5555 4444 3333 888888888 1 111 000000
lowQualScore : . . . ...... . . . ... . . . . .. . ...... . . . ... . . ....... .. . . . ... .. . . ....... . ... ... . . . . .... .... .... ......... . ... ......
lowQualScore : 1 9 9 555555 5 5 0 444 4 7 4 4 44 2 111111 9 5 5 444 5 8 8888888 00 8 6 4 444 00 6 1 8888888 2 000 888 0 7 0 3 8888 0000 0000 000000000 0 555 333333
consensus : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTCTTA-AA--GAATATCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
Reference ( family-291 ) : CTGAATTGGCAT-T-TTTTTA--C-T-T-T-A-TTGGAAG---AC-TATTCCAA-ATT-TTTGAT--CCCGAATATATA------AAAGATCTTCTAA-ATAATTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TT--AGGTTAGACGAGGATCTTAA---A--T-TTCTTA-AA--GAATATCAGTATTTAG---AAT---AAATGCATCCNTAAGATACGACGG-GGCAAGGTTATGTAACGTTTNATACATAAGAAATGACTTTTGAAATTTTACCCTTTTAGGGAAAATAACTTTCAAGTTACAANCCAGTTTTTGCAAACAGTTCAACAGAAGGTGTGTTA----NNTGTTTTATCA
gi|1 : CTGAAGTGGCAT-T-TTTTTA--T-T-T-T-A-ATGGAAG---AC-CTTTCCAA-ATT-TTTGAT--ACCGAATATATA------AAACGTTTTCTAA-ATAAATC-ATG---ATTTGATCGGGGAGTATGTACAC-------TT--ATGTTAGATAAAGAGCTTAACATA--T-TGATT------GAATAACAATATTTAG---AAT---AAATGCATCCCTAACATACGGCGG-TGCAAGATTATGTGACGTTTTATACATAAGA----ACTTTT----TTTT----TTTTAAAAAAAATAACTTTCAAGTTACAAATTAATTTTTGCAAACAGTTCAACAGAAGGTGTGTTATTTTTTTGTTTTATCA
gi|10 : -ATAACTC-AAG---ATTTGGCCGGGGAGTGTATACAC-------TT--AAGTTAG-----GATCTCAA---A--T-TTCTTA-AAA-GAATATCAGTATTTAA---AAT---AAATGCATCCATAGGAAACGACGA-GGCAAGGTTATGTAACGTTAAATACaaaaagagtgtttacagctctttttgaaactcttacattttttttaaa
gi|11 : TGGAAG---AC-TATTCCAG-GAT-GTGAAT--CCTTAACATATA------AAAGCTATTTTGA-ATAACTC-CAG---ATTTGGTCGGGGAGTATGCACAT-------TT--AGGTTAGATGAAGATCTGAA---A--TATTCt
gi|12 : cCTAAATTGGCAT-TATTTTTA--CAT-T-T-G-TTGGAAG---AC--ATTTCCA-ATA-TTTGAT--CATGACTATATA------AAAGATGTT-TAACATAGCTC-ATG---GTTTGcattcgaata
gi|13 : caATTGGCAT-G-TTTTT---------------GGAAG---AC-AATTCCATTGTT-TTTGAT--CCCGAATATATA------AACGATCTTCAAA-ATAACTC-ATG---ATTTGGTCGtgtttgttgggaga
gi|14 : ttattgAATTATCAT-T-TTT--A--C-C-T-T-AACTGGAAG---AC-T--TCCAA-ATG-TATGAT--CC-GAAGATATA------AAAGATCATCTAA-ATATTTC-ATG---A-TTAGTCGGGaccacacttagaacta
gi|15 : GCAT-T-TTTA-A--C-T-T-T-A-TTGGAAG---GC-TAC-CTAA-ATC-TTTTA---CACGAATGTATA------ACAGATGTTCTAA-ATAATTC-ATG---ATTTGTTC
gi|16 : -TTTTCA--C-C-T-TCA-TTAGAAG---AT-TATTTCAA-ACT----GAT--CCCGA-TGTATA------AAATATCTTCTAA-ATAATTC-CTG---ATTTGt
gi|17 : aagtgtca--C-T-T-T-A-TTTGAAG---AC-TGTTTCAA-AAT-TTAGAT--CCTGAATATATAT-----ATATATATTCTAA-ATAATTC-ATG---ATT
gi|18 : cacCTGAATTGGCAT-T-TCTTTA--CAT-T-T-A-TTGGAAG---AC-TTTTCCAA-ATG-TTT-AT--CCAGAACATA
gi|19 : taCTGAATTAGCAT-A-TTTT-A--C-AAT-T-G-TTGGAAG---AC-CATTCCGATATT-TTaatgttaaac
gi|2 : tcaCTGAATTGGCAT-T-TTTTTA--C-A-T-T-AATTTGAGG---TC-TATTTCAA-ATT-TTTGAT--CCCGAATGTATACATGTAAAAGATCTGCCAA-ATAATTC-ATG---GTTCGGTCGGGGAGTATTTACATGTACAAATT--ATGTAAAACGAGAATCTTAA---A--T-TTCTTG-AATAAAAAATCAGTATTTAG---AAT---AAATGCATCGATAAGATATGACGG-GTCAACGTTATGAAACGTTTAATACA-AAAAAaaactgagactatat
gi|20 : gCTGAATTGGCA--T-TTTTTA--CAA-G-G-A-TAGGAAG---AC-TATACCAA-TTT-TTTTAT--CCGGATTAT
gi|21 : caGCAAACAGTTCAACAGAAGGTGTGTCA----AATGTTTTATCA
gi|3 : ATTGGCAT-T-TTTATG----T-T-T-A-----AAGGGTAC-TGTATCTA-TTTATTTAATACCTCGAATATCTG------AATGGCGTTTTAA-ATAATTC-GTG---ATTTAGTTTTGGAGTATACAAAT-------TT--AGGTCAGATAGAAACTTTAA---A--T-TTCTTA-AAT-GAATATTGGTTTTTAA---AGA---AAATGCATCCTTAAGATACAAAGGTAGCAAGGT
gi|4 : atatTGATCGGAGAGTATAAAAAA-------AT--AGGTTTGTGGAGAATCTTGA---A--T-TACT--------AACATCAGTATTTAG---AGTTAAAAAAACA---CTAAGAGACGACGG-AGCG-GATTGTACATCGTTTTATACATAAGAAATGATTTTTGAAATTTTACCCTTTTAGGGAAAATAA---------TACAATCCAG---TTGCAAACTGTTCTATAGGAAGTGTATTA----cgtagtgatgat
gi|5 : TGAATTGACAT-T-TTTACA----------A-GTACAAGCG-ACCTATTCAAA-ACT-TTTGAT--CCTGAACATATT------AAAGATCTTCTGA-ATAAGTCGAT----ATTTGGTCGGGGAGTAT----AC-------TT--AGGTTTGATAAGGA---TAA---A----TGGTTA-AA---------------------AAT---AAATGCATCCCAAAGATACGACGG-GGTAAGATTATGTAACGTTTGATA
gi|6 : aTTTAACC-T-T-T-A-TTGGAAG---AC-TAGTCGAA-ACC-TTTGAC--CCCGAATATATA------AAATATGTTCTGA-ATATTTC-ATG---ATTTGGTCGGGGAGTATATACAT-------TG--AGTTTAGATGAAGATATTAA---A--T-CTCTTA-AAT-GGATATTAGTATTTAATATAAT---AACTGCATCACTAGTAAACGGCaacacttactata
gi|7 : tgTGCATTGGCAT-T-TTTTAA--A-T-T-C-A-TTG-AAG---AC-TATTTCA----T-TTTCA----CCGAATTTATA------AAAGATCATCTAA-ACAATTC-ATG---ATTTAGTCGGTTAGAATATACAT-------TA--AGGTTAGACGA-AATCTTAA---A--T-TTCTTG-AA--ACATATTAGTATTTAG---AAT---AGATGCGTACATAAGATAa
gi|8 : CTGAATTGGCATCT-TTTTTA--C-C-TGT-A-TTGGAAG---AT-TAT------------------CCCAAATACATA------AAAGATCGTCTAA-ACATTTC-ATGAGTATTCGGCCGGGAAGTACATA-----------T--AGGTTAAACGAGGACCTTAT---ACCT-TATTTATAA--GCGT-TCAGTGTTTAG---
gi|9 : caCTAC-ATAATTC-ATG---ATTTGGACAGGGAGTATATATTT-------TTTTAACATAGACGAGAATCTTAA---A--T-TTCTT------GAAT-TC--TATTCAG---AAT---AAATACACACATAAGATACGACGG-GGCAAGGTTACGTAACGTTTTATAtaca