lowQualScore : 5555 1 1 1 1 11111 111 222 111 1 444444444444444444 2222222222 111111111111 1111111 2222222 222 11 1 1 444444444444 111111 1111 2222 111111 11 11 333 7777 2
lowQualScore : 1 4444 44 3 3 8 666 7777 4 2 3 4 4 5 0 0 0 1 0 88888 888 000 77 000 6 444444444444444444 66 0 2 5 77 5555555555 888888888888 5 1111111 0 7777777 55 444 3 2 5 44 0 3 4 77 66 0 8 5 2 5 4 5 4 999 8 111111111111 66 2 888 66 444444 2222 7777 999999 7 44 1 33 22 4 555 0000 6 0
lowQualScore : . .... .. . . . ... .... . . . . . . . . . . . ..... ... ... .. ... . .................. .. . . . .. .......... ............ . ....... . ....... .. ... . . . .. . . . .. .. . . . . . . . . ... . ............ .. . ... .. ...... .... .... ...... . .. . .. .. . ... .... . .
lowQualScore : 7 9999 66 7 3 5 444 7777 4 8 6 4 0 0 4 5 1 9 1 00000 333 000 99 000 1 111111111111111111 99 5 1 7 11 0000000000 888888888888 0 5555555 9 0000000 66 000 5 2 0 00 8 2 2 44 99 8 8 0 5 0 5 5 0 111 8 000000000000 99 5 888 99 444444 8888 2222 111111 1 00 2 55 55 0 000 0000 0 0
consensus : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAA-AATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAAACN----TAAATAAGA-AGAAGGC---TCAAA--TGT---CTGTTTTAAA-TGTCT---N-----TATAT--ATATAAAGATGNACAT-GTGACCATA-CATTN--C----CGCCAATTTG----C--AATGT-AT---A---TATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAA-CNGTTAATATTGACTGATTC-TGG--AAACANCCAAA-CGTCGTGCATANCCTGCG--TTNTGTAAAAT------CGAT--C--GNACCTTA---AAGGC--C------CAATT-T--TGA-GN-ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGTTGTGTAC-NATTGACCGTA-NANTACACTTATTACTACTTTTGCTATAT
Reference ( gi|1 ) : AATTACAATAAATCCAATGTA--TTCTACATTAAACTGTT-AAACGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAA-AATCGATCTTTT-GTCAATATT-AAGACGGTTAATAAATTTAAACATACTTGGATGAGTTGAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTGTTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAAACA----TAAATAAGT-AGAAGGC---TCAAA--TGT---CTGTATTAAA-TGTCT---T-----TATAT--ATATAAAGATGTACAT-GTGACCATA-CATTC--C----CTCCAATTTG----C--AATGT-AT---A---TATCTC-T---ATGCCTAGTCCGTAATAATGGTATGAAA-CAGTTAATATTGACTGATTC-AGG--AAACATCCAAA-CGTC-TGCATAACCTGCA--TTATGTAAAAT------TGAT--C--GGACTTTA---AAGGC--C------CAATT-T--TGA-AC-ATTGTGA---TTTTCATCAATTTCCCTTCTTTGACTATGTAT-TATTGACCGTA-GAATACA---ATTA----TCTTGCT-TATTCC
gi|2 : AATAACAATA----CAATGTA--TTCTACATCAATCTTTT-AAACGAGTATCC---CTGAGTTTGAAACCCTTAATACGTACAATAAGTTGCAAGTTTGTTTAA-AATTGATTTTTT-GTCAATATT-AAGGAGGTTAATAAATTTAAACATGCTTGGATTTGTTGAATA
gi|6 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTGTTTAAACGAGGGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAA-AATATATTTTTT-GTCAATATT-AAGAATGTTAATAAATTTAAACATACTTGGATGAATTGAATAActatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgttttttagctgtagtatttcttcattttctaaacttatataagaagaaggttcaatctgttttaaaatgtatgtatatatataaagatgtacaagtgatcatacatttctgccaatctgcaatgtatatatctctaagcgtagccgtagtaatggtaaatttaccgattcttgaaacatccaaacgtctgcatatccttcgttatgtaaaatcgatcggactataaaagcccaattttgagaattgcgagtttcgtcaattacttttct
gi|13 : AATTACAATA----CAATGCA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGCTGCAAGTTTGTTTAA-AATAGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAATATAtatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataaccgtagtttagctatagtgtttttataattaacattttctaaacttaaataagaagaaggttcaaatgtatgtttaaaatttctgtatatataaagatgaaa
gi|20 : aAATTACAATAAA----ATGTT--TTATACATTAAACTTAT-AAATGAGTATCC---CTGAGTTTGAAACCATTAATAC----AAGAAGTTGCAAGTTAGTTTAA-AACTGATTTTTT-GTCAATATT-TAGAAGGTTtatatgcttgccatattaaactttgttaattttaatgatttttagaaggcaatatggtagataagtgaatatgaaatgtacattcatttt
gi|21 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCA
gi|23 : aAATTACAATA----CAATGTA--TTCTACATTAAACTGTT-AAATGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAA
gi|14 : aAATTTCAATA----CAATGTA--TTCTA--------TGTT-AAAC------------------TG------TTAA-AC----ATTAAGTTGCAAGTTTGTTTAA-AATTGAT--TTT-GTCAATATT-AAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGATTAA
gi|26 : aAATTACAATAAATACAATGTA--TTCTACATTAAACTGTT-AAAtaataaggtatatatataattttctcagatctttataaaatgggcaaataaatatgaaatggtattcgtcttcaatgttatttaattcacactattaccgttt
gi|15 : aATTACAATA----CAATGTT--TTCTACATCGAACTGTT-AATCTAGTATTC---ATGAGTTTGAAACCCTTAATAC----AACAAGTCGCAAGTTTGTTTAA-AATAGATTTTTTGGTCAATATTAAAGAAGATTAATAAATTTGAGC-TGTTTGGATGAGTTGAATAA
gi|11 : atATTACAACAAA----ATATT--TTCTACATTAAACTATA-AAACGAGTATCC---CTGCATTTAAAACCCTTAATAT----ATTAAGTTGCAAGTTTCTTAAA-AATTGAT-TTTT-GTCAATATT-AAGAAAGTTAAAAAATTTAAACATGTTTGGATGAGTTGAATAtatttaggtatacatgtacatttattacttttctaagacaattataaaatgggaaaatgagtatgaaatg
gi|17 : acACAATA----CAATGTT--TTCTATATTAAACCATT-AATCAAGTATTC---CAGAGTTTGAAACCCTTAACAC----AATAA-----------GTTTAA-AATTGATTTTTC-GTCAATATT-AAGAAGGTTGATAAATgtatttaggtgtatataattttctcagatcttcataacatgataaataaatatgaaatggtattcgtcttcaatgtcatttaagtcacaacataaacatttatatttatctcttgccatatt
gi|12 : aaaAACAAAT--AATTTAAATTCT---TCAAACT-TT-AA--GAGCAGCTGTTCTTATTTTAAATCCTTTTTTAC----AGTAAATTGCTAGCTTTATTAGCAAT--GTTTTTT-ATTTGTATT-CAGAAGATTAATCAATTTAAAAACACTTGGacagtacgtttgtatacctaactctgttg
gi|4 : cagtcaattgagtttatcgtgagagtgatcattgttagcatgaataggataaaaaatacaagttATATT-AAGAAAGTTGATAAATTTGTAAATGCTTGGATGAGTTGAACAAtttattaaaatagtattttggaatgtacattttccttaaat
gi|2 : ACCGTTTTTTAGCTGTAGTATTTCT------T-CATTTTCTAAACT----TATATAAGA-AGAAGGT---TCAA-----T---CTGTTTTAAAATGTAT---G-----TATAT--ATATAAAGATGTACAA-GTGATCATA-CATTT--C----TGCCAATCTG----C--AATGT-AT---A---TATCTC-T---AAGCGTAG-CCGTAGTAATGGTA-----------AAT-TT-ACCGATTC-TTG--AAACATCCAAA-CGTC-TGCATATCCTTCG--TTATGTAAAAT------CGAT--C--GGACTATA---AAAGC--C------CAATT-T--TGA-GA-ATTGCGA---GTTTCGTCAATTACTTTTCTtatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagctatagtgtttctatgttttacattttctaaacttaaataagaagaaagttcaaatgtctgtttaaaatgaaagtacgtgtgaccatccattcccgccaatgtctctaagcctagttcgtaataatggtatgaaacagttaatatcgagtgattatggaaacacccaaacgtttgcatatcctgcgttaaataaaatagatcggactttaaagacccaattttgagaattgtgattttcgtcaatttctctt
gi|6 : aaataacaatacaatgtattctacatcaatcttttaaacgagtatccctgagtttgaaacccttaatacgtacaataagttgcaagtttgtttaaaattgattttttgtcaatattaaggaggttaataaatttaaacatgcttggatttgttgaatactatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCGTAGTTTAGCTATAGTGTTTTTATAATTAACATTTTCTAAACT----TAAATAAGA-AGAAGGT---TCAAA--TGT---ATGT-TTAAA--ATTT---C-----TGTAT--ATATAAAGATG
gi|7 : aattacaaaacaatgtattctacattaaactgtttaaacgagggtccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatatattttttgtcaatattaagaatgttaataaatttaaacatacttggatgaattgaataatatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataTTTTTGCAATGATATTTCTGTATTAAATGTTATCTAA-CA----TAGTTAGATCATAAGACCTTTTAAAATTGC---CTTTATT------TCG---C-----TATAT--AGATATA-ATGAA------GACCATAATATTGTAC----TTGCA---TG----CC-AGTGTTAT---A---TATATCAG---ACGATTGGT---TAATACTGGTATAACATCATTTACT-TTAACTGATTCCAGATAAAACA---AAA-TCTCGTGTA-AACCTGCG--TTTTGTAAACT--------AT--CACGTACCCCA-----GGCGAC------CAATT-C--CTG-GT-GTAATGA---GTGTCATCAATTTCATTTCTCTGGTTGTGTACAAAATAACTA-A-TAATACACTTATTACT--TTTTGCT-TAaaa
gi|4 : TTTAGCTATAGTGTTTCTATGTTTTACATTTTCTAAACT----TAAATAAGA-AGAAAGT---TCAAA--TGT---CTGT-TTAAA------------------------ATGAAA--GTACGT-GTGACCATC-CATTC--C----CGCCAAT--------------------------GTCTC-T---AAGCCTAGTTCGTAATAATGGTATGAAA-CAGTTAATATCGAGTGATTA-TGG--AAACACCCAAA-CGTT-TGCATATCCTGCG--TTAAATAAAAT------AGAT--C--GGACTTTA---AAGAC--C------CAATT-T--TGA-GA-ATTGTGA---TTTTCGTCAATTTCTCTTatatatatagtattaaccaatatttaactattcctatatattgtataat
gi|9 : atattaagaaagttgataaatttgtaaatgcttggatgagttgaacaatatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCTATATTTTACATTTTCTAAACA----TAAATAACA-AGAAGGC---TCAAA--TGT---CTGTTTTAAA-TGTCT---G-----TATAT--ATATAAAGATGTACCT-GTGACCATA-CATTC--C----ATCCAATTTG----C--AATGT-AT---A---TATCTC-T---AAGTCTAGTCTGTAATAATGGTATGAAA-CAGTTAATATTGACTGACTC-GGG--AAACATCTAAA-CGTC-TGCATATCCTGCA--TTATGGAAAAT------CGAT--C--GGACTTTA---AAGGC--C------CAATT-T--TGA-AC-ATTGTGA---TTTTCATCAATTTCTCTTCTTTGACTATGTAT-TATTGACCGTA-GA
gi|10 : TTCTATAATTTGCATTTTCTAAACT----TAAATAAGA-AGAAGGT---TCAAA--TGT---CTGTTTTAAA-TGTCTGCATACCGGTATAT--ATAAAAAGATGTACAT-GTGATCATA-CATTC--C----CGCCAATTTG----C--AATGT-AT---A---TATCTC-T---AAGCCTAGTCCGTAATAATGGTATGAAA-CTGTTAATATTGACTGATTC-TGG--AAACATCCAAA-CGTC-TGCATATCCTGCA--TT------------------------GGACTTTA---AAGGC--C------CAATT-T--TGA-AA-ATTGTGA-----CTCGTCATTTTGTCTTCTTTGACTATGTAT-TATTGACCGTA-GAta
gi|3 : TTCTATATTTTATGTTATTT-AACAAAGTTAGATAA-T---AAGACCTTTTAAA--AGTTACCTTTATT------TCG---C-----TATATAAATACAATGAAGAACATAATGCCCAT--C-TTG--CACGGCGCCA--TTG----CGTAATAT-ATTTGAAATTATCTCAG---ACGATTAGT---TATTACTGGTATAAAA-CTATTTATATCAACTGATTA-TGG--ATATAACAAAA-ATTCGTGAA-AACCTGCG--TTTTATATAATACCACGTGA---C--GTACCTTA---AACGG--C------CAGTT-GA-TGA------TGTGAGGGTCATTATCAATTTCTTTTCTCCGGTTGTATAC-AACAGAACTTATTATTACA---ATTATTACTTTTGCTATAT
gi|8 : agaataaCT---A-----TATAA--ATACAACGAAGAACAT-ATTGTCATA--ATTG--CA---CGCCATTGTGTACAC--AATAT-AT---A---T-TCTC-TCAGACGATTAGT---TAATATTGGTATTAAA-TAATTTATATTAACTGATTC-TGG--ATATAACCAAA-TCTCGTGAA-AATCCGCG--TTTTGTAAAAT--------ATCAC--GTACCCTAGATAAGAC--TACAAAACAAAT-TGATGACACGAGTGCCA---TT---ATCAATTTGTTTTCTCTGagtttaacatctaaccattcttacataccgtgtaatacataaaggggggctaccaagttcggtgtatagtgatagagtgttagatgacatattacgttcaataaccattcacaaaaaatgttaatgatcgttttctttatgtaccctcacacttcacagctatgatttagaatagacaaaacacatgaacaggacattaacgggaacttccttgttcctggtt
gi|5 : gaacaggtgtatggttttatttagttccatggtcaagaataatgacagagacctttcaaaagttacctttatttcaG----T--AATAC-AT---A---TGTCTC-TCAGACAATTAGT---TAATATTGGTATACAA-CTGTTTATATTAACTGCTTT-TGG--ATATAAGCAAATCTCC-TG-A-AACCTGCGGCTTGTATAATAT------CA----C--GTACCTTA---GACGA--C------CAATTGT--TAATACGATTGTCA---TT---ATCAATTTATCTTCTTTGGTTGTATAgt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGTCAGTGGATTTGGTATGGTGAGAGTGACCATTGTTAACATGTAGAGGATATACAGTATTATATAAATATTAGATAAAGTCCTTTTCAAACATTAAGAACCGTTTTGTTATAATAAATCCTTTTGGCAGTGAATTGCTAGATTATTAACAATGGTTT
Unaligned ( gi|18 ): GTCAATTGAGTTGATCGTGAGAGTGATCACTGTTAGCATGAATAGGATAAACAGTATCAAGTTAACACATCATTAAATTTCCTCAAACATTAAGAGCAGCTGTTCTTATTTCAAATTCTTTTTGACAGTAAATTGCTAGCTT
Unaligned ( gi|19 ): CATACGTTGAGAGCAATTATTCTAATTTTAAGTCATTTTTGACAATGCATACTATTTCAGTATAAAGAGTTCCATTGTCTTCATCCAGAAGATTAATCAATTCATATGCACCTGAGTTACATGCATTACTATCATATTTTG
Unaligned ( gi|22 ): ATTTAAGCTATAATGTTTCTATGTTTTTTGTTGTTCAATTCTAACAGGTAGTCTGATATTTGGTATGTTTAATGTT
Unaligned ( gi|24 ): ATGTTTTTATTTTAAATCCTTTTTGACAGGAGATTAATCAATTTAAAAACACTTGGTGTGTTGAAATAATATTT
Unaligned ( gi|25 ): TTGAATATTTTTAAACATTAAAAACACCTGTTTTTATTTTAAAGGCTTTTTGACAGTAAAATGACAGTTTT
Alignments
lowQualScore : 2222 111 111111111 11111 1111111111111 11111 22222 111 2 1 222222222222 111111 11 1 11 22
lowQualScore : 0 4444 44 2 3 2 555 7777 0 4 3 1 0 2 777 1 2 66 0 5 0 888888888 1 5 55 1 77777 0 2 4444444444444 4 11111 4 00000 2 1 888 1 0 2 2 2 2 1 1 0 2 0 1 66 2 66 666666666666 1 777 66 222222 4 66 22 44 9999 22 2 77 0 99 1 5 88 77
lowQualScore : . .... .. . . . ... .... . . . . . . ... . . .. . . . ......... . . .. . ..... . . ............. . ..... . ..... . . ... . . . . . . . . . . . . .. . .. ............ . ... .. ...... . .. .. .. .... .. . .. . .. . . .. ..
lowQualScore : 8 2222 22 6 1 2 888 1111 3 0 6 0 5 0 555 0 0 99 4 0 1 777777777 0 0 11 0 00000 4 0 9999999999999 4 11111 4 88888 9 0 000 0 9 6 6 7 6 0 1 6 9 2 0 11 6 11 333333333333 0 888 11 888888 4 11 22 77 6666 99 7 77 8 00 0 0 00 55
consensus : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TGTCTGTTTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATA-CATTCC----CGCCAATTTG----C--A-----ATGT-AT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAACGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANNATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA-TTATTACTACTTTTGCTTAATAT
Reference ( family-2879 ) : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACNTAAATAAGAAGAAGGCTCAAA--TGTCTGTTTTAAA-TGTCTN--------TATATATATAAAGATGNACATG-TGACCATA-CATTNC----CGCCAATTTG----C--A-----ATGT-AT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTAATATTGACTGATTCTGGAAACANCCAAACGTCGTGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGNACCTTA---AAGGC--C------CAATT-T--TG--AGNATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGTTGTGTAC-NATTGACCGTA-NANTACACTTATTACTACTTTTGCT--ATAT
gi|1 : AATTACAATAAATCCAATGTA--TTCTACATTAAACTGTT-AAACGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATCGATCTTTT-GTCAATATT-AAGACGGTTAATAAATTTAAACATACTTGGATGAGTTGAATAA
gi|1 : ACCGTGTTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAA---ACATAAATAAGTAGAAGGCTCAAA--TGTCTGTATTAAA-TGTCTT--------TATATATATAAAGATGTACATG-TGACCATA-CATTCC----CTCCAATTTG----C--A-----ATGT-AT-----AT-ATCTC-T---ATGCCTAGTCCGTAATAATGGTATGAAACAGTTAATATTGACTGATTCAGGAAACATCCAAACGTC-TGCATAACCTGCA--TTATGTAAA--AT------TGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AACATTGTGA---TTTTCATCAATTTCCCTTCTTTGACTATGTAT-TATTGACCGTA-GAATACAATTATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgtgttttagctatagtgtttctatattttacattttctaaacataaataagtagaaggctcaaatgtctgtattaaatgtctttatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatatatctctatgcctagtccgtaataatggtatgaaacagttaatattgactgattcaggaaacatccaaacgtctgcataacctgcattatgtaaaattgatcggactttaaaggcccaattttgaacattgtgattttcatcaatttcccttctttgactatgtattattgaccgtagaatacaattatcttgcttattcc
gi|10 : aattacaataaatccaatgtattctacattaaactgttaaacgagaatccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatcgatcttttgtcaatattaagacggttaataaatttaaacatacttggatgagttgaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTATAATTTGCATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TGTCTGTTTTAAA-TGTCTGCATACCGGTATATATAAAAAGATGTACATG-TGATCATA-CATTCC----CGCCAATTTG----C--A-----ATGT-AT-----AT-ATCTC-T---AAGCCTAGTCCGTAATAATGGTATGAAACTGTTAATATTGACTGATTCTGGAAACATCCAAACGTC-TGCATATCCTGC------------------------AT--TGGACTTTA---AAGGC--C------CAATT-T--TG--AAAATTGTGA-----CTCGTCATTTTGTCTTCTTTGACTATGTAT-TATTGACCGTA-GActtgcttattcc
gi|11 : ATTACAACAAA----ATATT--TTCTACATTAAACTATA-AAACGAGTATCC---CTGCATTTAAAACCCTTAATAT----ATTAAGTTGCAAGTTTCTTAAAAATTGA-TTTTT-GTCAATATT-AAGAAAGTTAAAAAATTTAAACATGTTTGGATGAGTTGAATA
gi|12 : acAACAAA--TAATTTAAATTCT---TCAAACT-TT-AA--GAGCAGCTGTTCTTATTTTAAATCCTTTTTTAC----AGTAAATTGCTAGCTTTATTAGCAATG-TTTTTT-ATTTGTATT-CAGAAGATTAATCAATTTAAAAACACTTGGgtatttaggtgtatataattttctcagatcttcataacatgataaataaatatgaaatggtattcgtcttcaatgtcatttaagtcacaacataaacatttatatttatctcttgccatatt
gi|13 : cagtcaattgagtttatcgtgagagtgatcattgttagcatgaataggataaaaaatacaagttAATTACAATA----CAATGCA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGCTGCAAGTTTGTTTAAAATAGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAATATtttattaaaatagtattttggaatgtacattttccttaaat
gi|14 : aAATTTCAATA----CAATGTA--TTCTA--------TGTT-AAAC------------------TG------TTAA-AC----ATTAAGTTGCAAGTTTGTTTAAAATTGATTTT---GTCAATATT-AAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGATTAAatatatgcttgccatattaaactttgttaattttaatgatttttagaaggcaatatggtagataagtgaatatgaaatgtacattcatttt
gi|15 : aATTACAATA----CAATGTT--TTCTACATCGAACTGTT-AATCTAGTATTC---ATGAGTTTGAAACCCTTAATAC----AACAAGTCGCAAGTTTGTTTAAAATAGATTTTTTGGTCAATATTAAAGAAGATTAATAAATTTGAGC-TGTTTGGATGAGTTGAATAAtaataaggtatatatataattttctcagatctttataaaatgggcaaataaatatgaaatggtattcgtcttcaatgttatttaattcacactattaccgttt
gi|17 : atACAATA----CAATGTT--TTCTATATTAAACCATT-AATCAAGTATTC---CAGAGTTTGAAACCCTTAACAC----AATAA-----------GTTTAAAATTGATTTTTC-GTCAATATT-AAGAAGGTTGATAAATtatttaggtatacatgtacatttattacttttctaagacaattataaaatgggaaaatgagtatgaaatg
gi|2 : aaaAATAACAATA----CAATGTA--TTCTACATCAATCTTTT-AAACGAGTATCC---CTGAGTTTGAAACCCTTAATACGTACAATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGGAGGTTAATAAATTTAAACATGCTTGGATTTGTTGAATAacagtacgtttgtatacctaactctgttg
gi|2 : aACCGTTTTTTAGCTGTAGTATTTCT------T-CATTTTCTAA---ACTTATATAAGAAGAAGGTTCAA-----TCTGTTTTAAAATGTATG--------TATATATATAAAGATGTACAAG-TGATCATA-CATTTC----TGCCAATCTG----C--A-----ATGT-AT-----AT-ATCTC-T---AAGCGTAG-CCGTAGTAATGGTA----------AAT-TT-ACCGATTCTTGAAACATCCAAACGTC-TGCATATCCTTCG--TTATGTAAA--AT------CGAT--CGGACTATA---AAAGC--C------CAATT-T--TG--AGAATTGCGA---GTTTCGTCAATTACTTTTCTctatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgttttttagctgtagtatttcttcattttctaaacttatataagaagaaggttcaatctgttttaaaatgtatgtatatatataaagatgtacaagtgatcatacatttctgccaatctgcaatgtatatatctctaagcgtagccgtagtaatggtaaatttaccgattcttgaaacatccaaacgtctgcatatccttcgttatgtaaaatcgatcggactataaaagcccaattttgagaattgcgagtttcgtcaattacttttct
gi|20 : aaataacaatacaatgtattctacatcaatcttttaaacgagtatccctgagtttgaaacccttaatacgtacaataagttgcaagtttgtttaaaattgattttttgtcaatattaaggaggttaataaatttaaacatgcttggatttgttgaatactatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTACAATAAA----ATGTT--TTATACATTAAACTTAT-AAATGAGTATCC---CTGAGTTTGAAACCATTAATAC----AAGAAGTTGCAAGTTAGTTTAAAACTGATTTTTT-GTCAATATT-TAGAAGGTT
gi|21 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCA
gi|23 : aAATTACAATA----CAATGTA--TTCTACATTAAACTGTT-AAATGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAA
gi|26 : aAATTACAATAAATACAATGTA--TTCTACATTAAACTGTT-AAA
gi|3 : aTTCTATATTTTATGTTATTTAACAAAGTTAGATAATAAGACCTTTTAAA--AGTTACCTTTATT-TCGCTA--------TATAAATACAATGAAGAACATAATGCCCAT--C-TTGCACGGCGCCA--TTG----CGTA-----ATAT-ATTTGAAATTATCTCAG---ACGATTAGT---TATTACTGGTATAAAACTATTTATATCAACTGATTATGGATATAACAAAAATTCGTGAA-AACCTGCG--TTTTATATA--ATACCACGTGA---CGTACCTTA---AACGG--C------CAG---T--TG--ATGA-TGTGAGGGTCATTATCAATTTCTTTTCTCCGGTTGTATAC-AACAGAACTTATTATTACA---ATTATTACTTTTGCT--ATAT
gi|4 : agaataaATATT-AAGAAAGTTGATAAATTTGTAAATGCTTGGATGAGTTGAACAAagtttaacatctaaccattcttacataccgtgtaatacataaaggggggctaccaagttcggtgtatagtgatagagtgttagatgacatattacgttcaataaccattcacaaaaaatgttaatgatcgttttctttatgtaccctcacacttcacagctatgatttagaatagacaaaacacatgaacaggacattaacgggaacttccttgttcctggtt
gi|4 : TTTAGCTATAGTGTTTCTATGTTTTACATTTTCTAA---ACTTAAATAAGAAGAAAGTTCAAA--TGTCTGTTTAAAA-TG---------------------AAAG---TACGTG-TGACCATC-CATTCC----CGCCAAT-------------------------------GTCTC-T---AAGCCTAGTTCGTAATAATGGTATGAAACAGTTAATATCGAGTGATTATGGAAACACCCAAACGTT-TGCATATCCTGCG--TTAAATAAA--AT------AGAT--CGGACTTTA---AAGAC--C------CAATT-T--TG--AGAATTGTGA---TTTTCGTCAATTTCTCTTtatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagctatagtgtttctatgttttacattttctaaacttaaataagaagaaagttcaaatgtctgtttaaaatgaaagtacgtgtgaccatccattcccgccaatgtctctaagcctagttcgtaataatggtatgaaacagttaatatcgagtgattatggaaacacccaaacgtttgcatatcctgcgttaaataaaatagatcggactttaaagacccaattttgagaattgtgattttcgtcaatttctctt
gi|5 : atattaagaaagttgataaatttgtaaatgcttggatgagttgaacaatatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG----T--A-----ATAC-AT-----AT-GTCTC-TCAGACAATTAGT---TAATATTGGTATACAACTGTTTATATTAACTGCTTTTGGATATAAGCAAATCTCCTG-A-AACCTGCGGCTTGTATAAT--AT------CA----CGTACCTTA---GACGA--C------CAATTGT--TAATACGATTGTCA---TTA---TCAATTTATCTTCTTTGGTTGTATAC-AATAGA
gi|6 : AATTACAA--AA--CAATGTA--TTCTACATTAAACTGTTTAAACGAGGGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATATATTTTTT-GTCAATATT-AAGAATGTTAATAAATTTAAACATACTTGGATGAATTGAATAAacttgcttttttgattttttcaattatagctccaaccaaaagttaactattgttatcctgtaacatgtaatgggaatctaccaagttcagaatatattgataaagtgtttacattcaataactatttgtaaaatttccagattttctgctttaatgtgcacccacacttcacagcacagctataaaatagacaaaacatatgaatcgaaaaggttaaacatggtatctacgggaacttccttattactagt
gi|6 : ACCGTAGTTTAGCTATAGTGTTTTTATAATTAACATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TGTATGTTTAAAA-TTTCTG----------TATATATAAAGATGAAtatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataaccgtagtttagctatagtgtttttataattaacattttctaaacttaaataagaagaaggttcaaatgtatgtttaaaatttctgtatatataaagatgaaa
gi|7 : aattacaaaacaatgtattctacattaaactgtttaaacgagggtccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatatattttttgtcaatattaagaatgttaataaatttaaacatacttggatgaattgaataatatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataTTTTTGCAATGATATTTCTGTATTAAATGTTATCTAACATAGTTAGATCATAAGACCTTTTAAAATTGCCT---TTA---TTTCGC--------TATATAGATATA-ATGAA------GACCATAATATTGT---------ACTTG----C--ATGCCAGTGTTAT-----AT-ATATCAG---ACGATTGGT---TAATACTGGTATAACATCATTTACTTTAACTGATTCCAGATAAAACAAAATCTCGTGTA-AACCTGCG--TTTTGTAAACTAT------CA----CGTACCCCA-----GGCGAC------CAATT-C--CT--GGTGTAATGA---GTGTCATCAATTTCATTTCTCTGGTTGTGTACAAAATAACTA-A-TAATACACTTATTACT--TTTTGCTTAATATa
gi|8 : CTA--------TATAAATACAACGAAGAACATA-TTGTCATA--ATTGCA---CGCCATTGTGTACAC--A-----ATAT-AT-----AT--TCTC-TCAGACGATTAGT---TAATATTGGTATTAAATAATTTATATTAACTGATTCTGGATATAACCAAATCTCGTGAAAATCC-GCG--TTTTGTAAA--AT--------ATCACGTACCCTAGATAAGAC--TACAAAACAAAT-TGATGACACGAGTGCCA---TTA---TCAATTTGTTTTCTCTGGTatatagtattaaccaatatttaactattcctatatattgtataat
gi|9 : gaacaggtgtatggttttatttagttccatggtcaagaataatgacagagacctttcaaaagttacctttatttcaTTTCTATATTTTACATTTTCTAA---ACATAAATAACAAGAAGGCTCAAA--TGTCTGTTTTAAA-TGTCTG--------TATATATATAAAGATGTACCTG-TGACCATA-CATTCC----ATCCAATTTG----C--A-----ATGT-AT-----AT-ATCTC-T---AAGTCTAGTCTGTAATAATGGTATGAAACAGTTAATATTGACTGACTCGGGAAACATCTAAACGTC-TGCATATCCTGCA--TTATGGAAA--AT------CGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AACATTGTGA---TTTTCATCAATTTCTCTTCTTTGACTATGTAT-TATTGACCGTA-GA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTCAGTGGATTTGGTATGGTGAGAGTGACCATTGTTAACATGTAGAGGATATACAGTATTATATAAATATTAGATAAAGTCCTTTTCAAACATTAAGAACCGTTTTGTTATAATAAATCCTTTTGGCAGTGAATTGCTAGATTATTAACAATGGTTT
Unaligned ( gi|18 ): GTCAATTGAGTTGATCGTGAGAGTGATCACTGTTAGCATGAATAGGATAAACAGTATCAAGTTAACACATCATTAAATTTCCTCAAACATTAAGAGCAGCTGTTCTTATTTCAAATTCTTTTTGACAGTAAATTGCTAGCTT
Unaligned ( gi|19 ): CATACGTTGAGAGCAATTATTCTAATTTTAAGTCATTTTTGACAATGCATACTATTTCAGTATAAAGAGTTCCATTGTCTTCATCCAGAAGATTAATCAATTCATATGCACCTGAGTTACATGCATTACTATCATATTTTG
Unaligned ( gi|22 ): ATTTAAGCTATAATGTTTCTATGTTTTTTGTTGTTCAATTCTAACAGGTAGTCTGATATTTGGTATGTTTAATGTT
Unaligned ( gi|24 ): ATGTTTTTATTTTAAATCCTTTTTGACAGGAGATTAATCAATTTAAAAACACTTGGTGTGTTGAAATAATATTT
Unaligned ( gi|25 ): TTGAATATTTTTAAACATTAAAAACACCTGTTTTTATTTTAAAGGCTTTTTGACAGTAAAATGACAGTTTT
Alignments
lowQualScore : 2222 111 2222222222222 2222222222222222222 1111 1111111 11111 11111 111 1 1 222222222222 111111 444 3333
lowQualScore : 0 4444 44 2 3 2 555 7777 0 4 3 1 0 2 777 66 7777777777777 2 5 2222222222222222222 2 2 1 5 0 0 5555 2 5 2222222 11111 4 66666 2 1 888 1 0 2 2 1 1 4 1 3 2 0 1 66 2 66 666666666666 1 777 66 222222 4 66 66 8888 9999 1 5 77 0 8 444 3333 7
lowQualScore : . .... .. . . . ... .... . . . . . . ... .. ............. . . ................... . . . . . . .... . . ....... ..... . ..... . . ... . . . . . . . . . . . . .. . .. ............ . ... .. ...... . .. .. .... .... . . .. . . ... .... .
lowQualScore : 8 2222 22 6 1 2 888 1111 3 0 6 0 5 0 555 99 5555555555555 5 0 3333333333333333333 1 3 0 0 1 4 6666 2 0 9999999 11111 4 33333 9 0 000 0 9 6 6 0 0 4 1 3 9 2 0 11 6 11 333333333333 1 888 11 888888 4 11 11 1111 6666 0 4 77 8 0 000 0000 3
consensus : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
Reference ( family-2879 ) : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA-TTATTACTACTTTTGCTTAATAT
gi|1 : AATTACAATAAATCCAATGTA--TTCTACATTAAACTGTT-AAACGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATCGATCTTTT-GTCAATATT-AAGACGGTTAATAAATTTAAACATACTTGGATGAGTTGAATAA
gi|1 : ACCGTGTTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAA---ACATAAATAAGTAGAAGGCTCAAA--TGTCTGTATTAAATGTCT-T----------------------TATATATATAAAGATGTACATG-TGACCATACATTCC----CTCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ATGCCTAGTCCGTAATAATGGTATGAAACAGTTAATATTGACTGATTCAGGAAACATCCAAA-CGTC-TGCATAACCTGCA--TTATGTAAA--AT------TGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCCCTTCTTTGACTATGTAT-TATTGACCGTA-GAATACA---ATTA----TCTTGCTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgtgttttagctatagtgtttctatattttacattttctaaacataaataagtagaaggctcaaatgtctgtattaaatgtctttatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatatatctctatgcctagtccgtaataatggtatgaaacagttaatattgactgattcaggaaacatccaaacgtctgcataacctgcattatgtaaaattgatcggactttaaaggcccaattttgaacattgtgattttcatcaatttcccttctttgactatgtattattgaccgtagaatacaattatcttgcttattcc
gi|10 : aattacaataaatccaatgtattctacattaaactgttaaacgagaatccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatcgatcttttgtcaatattaagacggttaataaatttaaacatacttggatgagttgaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTATAATTTGCATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTGCATACCGGTATATATAAAAAGATGTACATG-TGATCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGCCTAGTCCGTAATAATGGTATGAAACTGTTAATATTGACTGATTCTGGAAACATCCAAA-CGTC-TGCATATCCTGC------------------------AT--TGGACTTTA---AAGGC--C------CAATT-T--TG--AAA--ATTGTGA-----CTCGTCATTTTGTCTTCTTTGACTATGTAT-TATTGACCGTA-GAttcc
gi|11 : ATTACAACAAA----ATATT--TTCTACATTAAACTATA-AAACGAGTATCC---CTGCATTTAAAACCCTTAATAT----ATTAAGTTGCAAGTTTCTTAAAAATTGA-TTTTT-GTCAATATT-AAGAAAGTTAAAAAATTTAAACATGTTTGGATGAGTTGAATA
gi|12 : acAACAAA--TAATTTAAATTCT---TCAAACT-TT-AA--GAGCAGCTGTTCTTATTTTAAATCCTTTTTTAC----AGTAAATTGCTAGCTTTATTAGCAATG-TTTTTT-ATTTGTATT-CAGAAGATTAATCAATTTAAAAACACTTGGgtatttaggtgtatataattttctcagatcttcataacatgataaataaatatgaaatggtattcgtcttcaatgtcatttaagtcacaacataaacatttatatttatctcttgccatatt
gi|13 : cagtcaattgagtttatcgtgagagtgatcattgttagcatgaataggataaaaaatacaagttAATTACAATA----CAATGCA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGCTGCAAGTTTGTTTAAAATAGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAATATtttattaaaatagtattttggaatgtacattttccttaaat
gi|14 : aAATTTCAATA----CAATGTA--TTCTA--------TGTT-AAAC------------------TG------TTAA-AC----ATTAAGTTGCAAGTTTGTTTAAAATTGATTTT---GTCAATATT-AAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGATTAAatatatgcttgccatattaaactttgttaattttaatgatttttagaaggcaatatggtagataagtgaatatgaaatgtacattcatttt
gi|15 : aATTACAATA----CAATGTT--TTCTACATCGAACTGTT-AATCTAGTATTC---ATGAGTTTGAAACCCTTAATAC----AACAAGTCGCAAGTTTGTTTAAAATAGATTTTTTGGTCAATATTAAAGAAGATTAATAAATTTGAGC-TGTTTGGATGAGTTGAATAAtaataaggtatatatataattttctcagatctttataaaatgggcaaataaatatgaaatggtattcgtcttcaatgttatttaattcacactattaccgttt
gi|17 : atACAATA----CAATGTT--TTCTATATTAAACCATT-AATCAAGTATTC---CAGAGTTTGAAACCCTTAACAC----AATAA-----------GTTTAAAATTGATTTTTC-GTCAATATT-AAGAAGGTTGATAAATtatttaggtatacatgtacatttattacttttctaagacaattataaaatgggaaaatgagtatgaaatg
gi|2 : aaaAATAACAATA----CAATGTA--TTCTACATCAATCTTTT-AAACGAGTATCC---CTGAGTTTGAAACCCTTAATACGTACAATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGGAGGTTAATAAATTTAAACATGCTTGGATTTGTTGAATAacagtacgtttgtatacctaactctgttg
gi|2 : aACCGTTTTTTAGCTGTAGTATTTCT------T-CATTTTCTAA---ACTTATATAAGAAGAAGGTTCAA------------------TCTGT-TTTAAAATGTATG--------TATATATATAAAGATGTACAAG-TGATCATACATTTC----TGCCAATCTG----C--AATGTAT-----AT-ATCTC-T---AAGCGTAG-CCGTAGTAATGGTA-----------A-ATTTACCGATTCTTGAAACATCCAAA-CGTC-TGCATATCCTTCG--TTATGTAAA--AT------CGAT--CGGACTATA---AAAGC--C------CAATT-T--TG--AGA--ATTGCGA---GTTTCGTCAATTACTTTTCTctatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgttttttagctgtagtatttcttcattttctaaacttatataagaagaaggttcaatctgttttaaaatgtatgtatatatataaagatgtacaagtgatcatacatttctgccaatctgcaatgtatatatctctaagcgtagccgtagtaatggtaaatttaccgattcttgaaacatccaaacgtctgcatatccttcgttatgtaaaatcgatcggactataaaagcccaattttgagaattgcgagtttcgtcaattacttttct
gi|20 : aaataacaatacaatgtattctacatcaatcttttaaacgagtatccctgagtttgaaacccttaatacgtacaataagttgcaagtttgtttaaaattgattttttgtcaatattaaggaggttaataaatttaaacatgcttggatttgttgaatactatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTACAATAAA----ATGTT--TTATACATTAAACTTAT-AAATGAGTATCC---CTGAGTTTGAAACCATTAATAC----AAGAAGTTGCAAGTTAGTTTAAAACTGATTTTTT-GTCAATATT-TAGAAGGTT
gi|21 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCA
gi|23 : aAATTACAATA----CAATGTA--TTCTACATTAAACTGTT-AAATGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAA
gi|26 : aAATTACAATAAATACAATGTA--TTCTACATTAAACTGTT-AAA
gi|3 : aTTCTATATTTTATGTTATTTAACAAAGTTAGATAATAAGACCTTTTAAA--AG-------------TTACC-TTTATT-TCGCTA--------TATAAATACAATGAAGAACATAATGCCCAT-C-TTGCACGGCGCCA--TTG----CGTAATATATTTGAAATTATCTCAG---ACGATTAGT---TATTACTGGTATAAAACTATTTATATCAACTGATTATGGATATAACAAAA-ATTCGTGAA-AACCTGCG--TTTTATATA--ATACCACGTGA---CGTACCTTA---AACGG--C------CAG---T--TG--ATG--A-TGTGAGGGTCATTATCAATTTCTTTTCTCCGGTTGTATAC-AACAGAACTTATTATTACA---ATTATTACTTTTGCT--ATAT
gi|4 : agaataaATATT-AAGAAAGTTGATAAATTTGTAAATGCTTGGATGAGTTGAACAAagtttaacatctaaccattcttacataccgtgtaatacataaaggggggctaccaagttcggtgtatagtgatagagtgttagatgacatattacgttcaataaccattcacaaaaaatgttaatgatcgttttctttatgtaccctcacacttcacagctatgatttagaatagacaaaacacatgaacaggacattaacgggaacttccttgttcctggtt
gi|4 : TTTAGCTATAGTGTTTCTATGTTTTACATTTTCTAA---ACTTAAATAAGAAGAAAGTTCAAA--TG-------------TCTGT-TTAAAA-TG---------------------AAAG---TACGTG-TGACCATCCATTCC----CGCCAAT-------------------------GTCTC-T---AAGCCTAGTTCGTAATAATGGTATGAAACAGTTAATATCGAGTGATTATGGAAACACCCAAA-CGTT-TGCATATCCTGCG--TTAAATAAA--AT------AGAT--CGGACTTTA---AAGAC--C------CAATT-T--TG--AGA--ATTGTGA---TTTTCGTCAATTTCTCTTtatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagctatagtgtttctatgttttacattttctaaacttaaataagaagaaagttcaaatgtctgtttaaaatgaaagtacgtgtgaccatccattcccgccaatgtctctaagcctagttcgtaataatggtatgaaacagttaatatcgagtgattatggaaacacccaaacgtttgcatatcctgcgttaaataaaatagatcggactttaaagacccaattttgagaattgtgattttcgtcaatttctctt
gi|5 : atattaagaaagttgataaatttgtaaatgcttggatgagttgaacaatatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG----T--AATACAT-----AT-GTCTC-TCAGACAATTAGT---TAATATTGGTATACAACTGTTTATATTAACTGCTTTTGGATATAAGCAAATCTCC-TG-A-AACCTGCGGCTTGTATAAT--AT------CA----CGTACCTTA---GACGA--C------CAATTGT--TA--ATACGATTGTCA---TTATC---AATTTATCTTCTTTGGTTGTATAC-AATAGA
gi|6 : AATTACAA--AA--CAATGTA--TTCTACATTAAACTGTTTAAACGAGGGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATATATTTTTT-GTCAATATT-AAGAATGTTAATAAATTTAAACATACTTGGATGAATTGAATAAacttgcttttttgattttttcaattatagctccaaccaaaagttaactattgttatcctgtaacatgtaatgggaatctaccaagttcagaatatattgataaagtgtttacattcaataactatttgtaaaatttccagattttctgctttaatgtgcacccacacttcacagcacagctataaaatagacaaaacatatgaatcgaaaaggttaaacatggtatctacgggaacttccttattactagt
gi|6 : ACCGTAGTTTAGCTATAGTGTTTTTATAATTAACATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TATGT-TTAAAA-TTTCTG----------TATATATAAAGATGAAtatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataaccgtagtttagctatagtgtttttataattaacattttctaaacttaaataagaagaaggttcaaatgtatgtttaaaatttctgtatatataaagatgaaa
gi|7 : aattacaaaacaatgtattctacattaaactgtttaaacgagggtccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatatattttttgtcaatattaagaatgttaataaatttaaacatacttggatgaattgaataatatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataTTTTTGCAATGATATTTCTGTATTAAATGTTATCTAACATAGTTAGATCATAAGACCTTTTAAAATTG-------------CCTTTATTT----CG-CTA--------TATAGATATAATGAAGACCATA-ATATTGTACTTGCA----TGCCAGTGT----------TATAT-----AT-ATC-A-G---ACGATTGGT---TAATACTGGTATAACATCATTTACTTTAACTGATTCCAGATAAAACAAAA-TCTCGTGTA-AACCTGCG--TTTTGTAAACTAT------CA----CGTACCCC-----AGGCGAC------CAATT-C--CT--GGT--GTAATGA---GTGTCATCAATTTCATTTCTCTGGTTGTGTACAAAATAACTA-A-TAATACACTTATTACT--TTTTGCTTAATATa
gi|8 : CTA--------TATAAATACAACGAAGAACATA-TTGTCATA-ATTGCA---CGCCATTGTGTACAC--AATATAT-----AT--TCTC-TCAGACGATTAGT---TAATATTGGTATTAAATAATTTATATTAACTGATTCTGGATATAACCAAA-TCTCGTGAAAATCC-GCG--TTTTGTAAA--AT--------ATCACGTACCCTAGATAAGAC--TACAAAACAAAT-TGATGACACG--AGTGCCA---TTA---TCAATTTGTTTTCTCTGGatatagtattaaccaatatttaactattcctatatattgtataat
gi|9 : gaacaggtgtatggttttatttagttccatggtcaagaataatgacagagacctttcaaaagttacctttatttcaTTTCTATATTTTACATTTTCTAA---ACATAAATAACAAGAAGGCTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGTACCTG-TGACCATACATTCC----ATCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGTCTAGTCTGTAATAATGGTATGAAACAGTTAATATTGACTGACTCGGGAAACATCTAAA-CGTC-TGCATATCCTGCA--TTATGGAAA--AT------CGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCTCTTCTTTGACTATGTAT-TATTGACCGTA-GAt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTCAGTGGATTTGGTATGGTGAGAGTGACCATTGTTAACATGTAGAGGATATACAGTATTATATAAATATTAGATAAAGTCCTTTTCAAACATTAAGAACCGTTTTGTTATAATAAATCCTTTTGGCAGTGAATTGCTAGATTATTAACAATGGTTT
Unaligned ( gi|18 ): GTCAATTGAGTTGATCGTGAGAGTGATCACTGTTAGCATGAATAGGATAAACAGTATCAAGTTAACACATCATTAAATTTCCTCAAACATTAAGAGCAGCTGTTCTTATTTCAAATTCTTTTTGACAGTAAATTGCTAGCTT
Unaligned ( gi|19 ): CATACGTTGAGAGCAATTATTCTAATTTTAAGTCATTTTTGACAATGCATACTATTTCAGTATAAAGAGTTCCATTGTCTTCATCCAGAAGATTAATCAATTCATATGCACCTGAGTTACATGCATTACTATCATATTTTG
Unaligned ( gi|22 ): ATTTAAGCTATAATGTTTCTATGTTTTTTGTTGTTCAATTCTAACAGGTAGTCTGATATTTGGTATGTTTAATGTT
Unaligned ( gi|24 ): ATGTTTTTATTTTAAATCCTTTTTGACAGGAGATTAATCAATTTAAAAACACTTGGTGTGTTGAAATAATATTT
Unaligned ( gi|25 ): TTGAATATTTTTAAACATTAAAAACACCTGTTTTTATTTTAAAGGCTTTTTGACAGTAAAATGACAGTTTT
Alignments
lowQualScore : 2222 111 2222222222222 2222222222222222222 1111 1111111 11111 11111 111 1 1 222222222222 111111 111 1111
lowQualScore : 0 4444 44 2 3 2 555 7777 0 4 3 1 0 2 777 66 7777777777777 2 5 2222222222222222222 2 2 1 5 0 0 5555 2 5 2222222 11111 4 66666 2 1 888 1 0 2 2 1 1 4 1 3 2 0 1 66 2 66 666666666666 1 777 66 222222 4 66 66 8888 9999 1 5 77 6 1 6 3 777 7777 7
lowQualScore : . .... .. . . . ... .... . . . . . . ... .. ............. . . ................... . . . . . . .... . . ....... ..... . ..... . . ... . . . . . . . . . . . . .. . .. ............ . ... .. ...... . .. .. .... .... . . .. . . . . ... .... .
lowQualScore : 8 2222 22 6 1 2 888 1111 3 0 6 0 5 0 555 99 5555555555555 5 0 3333333333333333333 1 3 0 0 1 4 6666 2 0 9999999 11111 4 33333 9 0 000 0 9 6 6 0 0 4 1 3 9 2 0 11 6 11 333333333333 1 888 11 888888 4 11 11 1111 6666 0 4 77 0 0 7 2 555 2222 3
consensus : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
Reference ( family-2879 ) : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
gi|1 : AATTACAATAAATCCAATGTA--TTCTACATTAAACTGTT-AAACGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATCGATCTTTT-GTCAATATT-AAGACGGTTAATAAATTTAAACATACTTGGATGAGTTGAATAA
gi|1 : ACCGTGTTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAA---ACATAAATAAGTAGAAGGCTCAAA--TGTCTGTATTAAATGTCT-T----------------------TATATATATAAAGATGTACATG-TGACCATACATTCC----CTCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ATGCCTAGTCCGTAATAATGGTATGAAACAGTTAATATTGACTGATTCAGGAAACATCCAAA-CGTC-TGCATAACCTGCA--TTATGTAAA--AT------TGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCCCTTCTTTGACTATGTAT-TATTGACCGTA-GAATACA---ATTA----TCTTGCTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgtgttttagctatagtgtttctatattttacattttctaaacataaataagtagaaggctcaaatgtctgtattaaatgtctttatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatatatctctatgcctagtccgtaataatggtatgaaacagttaatattgactgattcaggaaacatccaaacgtctgcataacctgcattatgtaaaattgatcggactttaaaggcccaattttgaacattgtgattttcatcaatttcccttctttgactatgtattattgaccgtagaatacaattatcttgcttattcc
gi|10 : aattacaataaatccaatgtattctacattaaactgttaaacgagaatccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatcgatcttttgtcaatattaagacggttaataaatttaaacatacttggatgagttgaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTATAATTTGCATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTGCATACCGGTATATATAAAAAGATGTACATG-TGATCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGCCTAGTCCGTAATAATGGTATGAAACTGTTAATATTGACTGATTCTGGAAACATCCAAA-CGTC-TGCATATCCTGC------------------------AT--TGGACTTTA---AAGGC--C------CAATT-T--TG--AAA--ATTGTGA-----CTCGTCATTTTGTCTTCTTTGACTATGTAT-TATTGACCGTA-GAttcc
gi|11 : ATTACAACAAA----ATATT--TTCTACATTAAACTATA-AAACGAGTATCC---CTGCATTTAAAACCCTTAATAT----ATTAAGTTGCAAGTTTCTTAAAAATTGA-TTTTT-GTCAATATT-AAGAAAGTTAAAAAATTTAAACATGTTTGGATGAGTTGAATA
gi|12 : acAACAAA--TAATTTAAATTCT---TCAAACT-TT-AA--GAGCAGCTGTTCTTATTTTAAATCCTTTTTTAC----AGTAAATTGCTAGCTTTATTAGCAATG-TTTTTT-ATTTGTATT-CAGAAGATTAATCAATTTAAAAACACTTGGgtatttaggtgtatataattttctcagatcttcataacatgataaataaatatgaaatggtattcgtcttcaatgtcatttaagtcacaacataaacatttatatttatctcttgccatatt
gi|13 : cagtcaattgagtttatcgtgagagtgatcattgttagcatgaataggataaaaaatacaagttAATTACAATA----CAATGCA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGCTGCAAGTTTGTTTAAAATAGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAATATtttattaaaatagtattttggaatgtacattttccttaaat
gi|14 : aAATTTCAATA----CAATGTA--TTCTA--------TGTT-AAAC------------------TG------TTAA-AC----ATTAAGTTGCAAGTTTGTTTAAAATTGATTTT---GTCAATATT-AAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGATTAAatatatgcttgccatattaaactttgttaattttaatgatttttagaaggcaatatggtagataagtgaatatgaaatgtacattcatttt
gi|15 : aATTACAATA----CAATGTT--TTCTACATCGAACTGTT-AATCTAGTATTC---ATGAGTTTGAAACCCTTAATAC----AACAAGTCGCAAGTTTGTTTAAAATAGATTTTTTGGTCAATATTAAAGAAGATTAATAAATTTGAGC-TGTTTGGATGAGTTGAATAAtaataaggtatatatataattttctcagatctttataaaatgggcaaataaatatgaaatggtattcgtcttcaatgttatttaattcacactattaccgttt
gi|17 : atACAATA----CAATGTT--TTCTATATTAAACCATT-AATCAAGTATTC---CAGAGTTTGAAACCCTTAACAC----AATAA-----------GTTTAAAATTGATTTTTC-GTCAATATT-AAGAAGGTTGATAAATtatttaggtatacatgtacatttattacttttctaagacaattataaaatgggaaaatgagtatgaaatg
gi|2 : aaaAATAACAATA----CAATGTA--TTCTACATCAATCTTTT-AAACGAGTATCC---CTGAGTTTGAAACCCTTAATACGTACAATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGGAGGTTAATAAATTTAAACATGCTTGGATTTGTTGAATAacagtacgtttgtatacctaactctgttg
gi|2 : aACCGTTTTTTAGCTGTAGTATTTCT------T-CATTTTCTAA---ACTTATATAAGAAGAAGGTTCAA------------------TCTGT-TTTAAAATGTATG--------TATATATATAAAGATGTACAAG-TGATCATACATTTC----TGCCAATCTG----C--AATGTAT-----AT-ATCTC-T---AAGCGTAG-CCGTAGTAATGGTA-----------A-ATTTACCGATTCTTGAAACATCCAAA-CGTC-TGCATATCCTTCG--TTATGTAAA--AT------CGAT--CGGACTATA---AAAGC--C------CAATT-T--TG--AGA--ATTGCGA---GTTTCGTCAATTACTTTTCTctatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgttttttagctgtagtatttcttcattttctaaacttatataagaagaaggttcaatctgttttaaaatgtatgtatatatataaagatgtacaagtgatcatacatttctgccaatctgcaatgtatatatctctaagcgtagccgtagtaatggtaaatttaccgattcttgaaacatccaaacgtctgcatatccttcgttatgtaaaatcgatcggactataaaagcccaattttgagaattgcgagtttcgtcaattacttttct
gi|20 : aaataacaatacaatgtattctacatcaatcttttaaacgagtatccctgagtttgaaacccttaatacgtacaataagttgcaagtttgtttaaaattgattttttgtcaatattaaggaggttaataaatttaaacatgcttggatttgttgaatactatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTACAATAAA----ATGTT--TTATACATTAAACTTAT-AAATGAGTATCC---CTGAGTTTGAAACCATTAATAC----AAGAAGTTGCAAGTTAGTTTAAAACTGATTTTTT-GTCAATATT-TAGAAGGTT
gi|21 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCA
gi|23 : aAATTACAATA----CAATGTA--TTCTACATTAAACTGTT-AAATGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAA
gi|26 : aAATTACAATAAATACAATGTA--TTCTACATTAAACTGTT-AAA
gi|3 : aTTCTATATTTTATGTTATTTAACAAAGTTAGATAATAAGACCTTTTAAA--AG-------------TTACC-TTTATT-TCGCTA--------TATAAATACAATGAAGAACATAATGCCCAT-C-TTGCACGGCGCCA--TTG----CGTAATATATTTGAAATTATCTCAG---ACGATTAGT---TATTACTGGTATAAAACTATTTATATCAACTGATTATGGATATAACAAAA-ATTCGTGAA-AACCTGCG--TTTTATATA--ATACCACGTGA---CGTACCTTA---AACGG--C------CAG---T--TG--ATG--A-TGTGAGGGTCATTATCAATTTCTTTTCTCCGGTTGTATAC-AACAGAACTTATTATTACA---ATTATTACTTTTGCT--ATAT
gi|4 : agaataaATATT-AAGAAAGTTGATAAATTTGTAAATGCTTGGATGAGTTGAACAAagtttaacatctaaccattcttacataccgtgtaatacataaaggggggctaccaagttcggtgtatagtgatagagtgttagatgacatattacgttcaataaccattcacaaaaaatgttaatgatcgttttctttatgtaccctcacacttcacagctatgatttagaatagacaaaacacatgaacaggacattaacgggaacttccttgttcctggtt
gi|4 : TTTAGCTATAGTGTTTCTATGTTTTACATTTTCTAA---ACTTAAATAAGAAGAAAGTTCAAA--TG-------------TCTGT-TTAAAA-TG---------------------AAAG---TACGTG-TGACCATCCATTCC----CGCCAAT-------------------------GTCTC-T---AAGCCTAGTTCGTAATAATGGTATGAAACAGTTAATATCGAGTGATTATGGAAACACCCAAA-CGTT-TGCATATCCTGCG--TTAAATAAA--AT------AGAT--CGGACTTTA---AAGAC--C------CAATT-T--TG--AGA--ATTGTGA---TTTTCGTCAATTTCTCTTtatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagctatagtgtttctatgttttacattttctaaacttaaataagaagaaagttcaaatgtctgtttaaaatgaaagtacgtgtgaccatccattcccgccaatgtctctaagcctagttcgtaataatggtatgaaacagttaatatcgagtgattatggaaacacccaaacgtttgcatatcctgcgttaaataaaatagatcggactttaaagacccaattttgagaattgtgattttcgtcaatttctctt
gi|5 : atattaagaaagttgataaatttgtaaatgcttggatgagttgaacaatatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG----T--AATACAT-----AT-GTCTC-TCAGACAATTAGT---TAATATTGGTATACAACTGTTTATATTAACTGCTTTTGGATATAAGCAAATCTCC-TG-A-AACCTGCGGCTTGTATAAT--AT------CA----CGTACCTTA---GACGA--C------CAATTGT--TA--ATACGATTGTCA---TTATC---AATTTATCTTCTTTGGTTGTATAC-AA-------TA-GAAC-------TTGCT--TTTT
gi|6 : AATTACAA--AA--CAATGTA--TTCTACATTAAACTGTTTAAACGAGGGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATATATTTTTT-GTCAATATT-AAGAATGTTAATAAATTTAAACATACTTGGATGAATTGAATAAtgattttttcaattatagctccaaccaaaagttaactattgttatcctgtaacatgtaatgggaatctaccaagttcagaatatattgataaagtgtttacattcaataactatttgtaaaatttccagattttctgctttaatgtgcacccacacttcacagcacagctataaaatagacaaaacatatgaatcgaaaaggttaaacatggtatctacgggaacttccttattactagt
gi|6 : ACCGTAGTTTAGCTATAGTGTTTTTATAATTAACATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TATGT-TTAAAA-TTTCTG----------TATATATAAAGATGAAtatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataaccgtagtttagctatagtgtttttataattaacattttctaaacttaaataagaagaaggttcaaatgtatgtttaaaatttctgtatatataaagatgaaa
gi|7 : aattacaaaacaatgtattctacattaaactgtttaaacgagggtccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatatattttttgtcaatattaagaatgttaataaatttaaacatacttggatgaattgaataatatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataTTTTTGCAATGATATTTCTGTATTAAATGTTATCTAACATAGTTAGATCATAAGACCTTTTAAAATTG-------------CCTTTATTT----CG-CTA--------TATAGATATAATGAAGACCATA-ATATTGTACTTGCA----TGCCAGTGT----------TATAT-----AT-ATC-A-G---ACGATTGGT---TAATACTGGTATAACATCATTTACTTTAACTGATTCCAGATAAAACAAAA-TCTCGTGTA-AACCTGCG--TTTTGTAAACTAT------CA----CGTACCCC-----AGGCGAC------CAATT-C--CT--GGT--GTAATGA---GTGTCATCAATTTCATTTCTCTGGTTGTGTACAAAATAACTA-A-TAATACACTTATTACT--TTTTGCTTAATATa
gi|8 : CTA--------TATAAATACAACGAAGAACATA-TTGTCATA-ATTGCA---CGCCATTGTGTACAC--AATATAT-----AT--TCTC-TCAGACGATTAGT---TAATATTGGTATTAAATAATTTATATTAACTGATTCTGGATATAACCAAA-TCTCGTGAAAATCC-GCG--TTTTGTAAA--AT--------ATCACGTACCCTAGATAAGAC--TACAAAACAAAT-TGATGACACG--AGTGCCA---TTA---TCAATTTGTTTTCTCTGGatatagtattaaccaatatttaactattcctatatattgtataat
gi|9 : gaacaggtgtatggttttatttagttccatggtcaagaataatgacagagacctttcaaaagttacctttatttcaTTTCTATATTTTACATTTTCTAA---ACATAAATAACAAGAAGGCTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGTACCTG-TGACCATACATTCC----ATCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGTCTAGTCTGTAATAATGGTATGAAACAGTTAATATTGACTGACTCGGGAAACATCTAAA-CGTC-TGCATATCCTGCA--TTATGGAAA--AT------CGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCTCTTCTTTGACTATGTAT-TATTGACCGTA-GAt
blockSeqs : AATA AA A T T GTT GTAC G A T A CAA AT . G A TAAATGTCTGCATACCGG T T T A ACGG A T TACAC TTGAA T TCAG A C CCG A T A A T T G G C T T GC A CT ACCACGTGA G GAT GA ACAAAA G GA AC TACG GGGT C G AA T G T A CTT TTAC T
blockSeqs : AA . A . C . . . . A A CAT . . G . TAAAATGTATG T T T . A A C CGT . . TCAG A C CCG A T T A T . G G C T T . T . CGAT G . . . . . . AA G T G T C T . A . CT .
blockSeqs : AA . G . A . . . . G . . . C . TATTTCGCTA A A A . . A T C . . AG C A TCG C A A T A . T G A T A . A . AGAT T . . . . . . GA T A A A A A . . . CT
blockSeqs : AA . G . T . . . . A . . . G . AAAATTTCTG T T T . . G G C . . T A C CTG A T T A C . G . C A T . G . ATCA G . . . . . . TG T T G A T G .
blockSeqs : AA . A . T . . . . A . . . G . TAAATGTCTG G A A . . T G T . . T C A . T C T T A . T . T T A . T . CGAT T . . . . . . GA G A A T . . .
blockSeqs : AA . T . T . . . . G . . . T . AAAATG A A A . . A T C . . T C A . C A T T A . C . A . A . T . AT T . . . . . . GT T G A
blockSeqs : . . T . T . . . . A . . . G . TCGCTA T T A . . . . . . . G C A . T A A T A . C . C . T . A . CA T . . . . . . CG T A .
blockSeqs : . . A . A . . . . . . T . . . T A T . A . . A T . G . . . T . . . CA G . . . . . . AC . T .
blockSeqs : . . G . A . . . .
blockSeqs : . . G . G . . .
blockSeqs : . . G . . . .
blockSeqs : . . . .
blockSeqCons : AA** ************* TAAATGTCTG*********
originalCons : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
finalCons : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAATGTCTG---------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTCAGTGGATTTGGTATGGTGAGAGTGACCATTGTTAACATGTAGAGGATATACAGTATTATATAAATATTAGATAAAGTCCTTTTCAAACATTAAGAACCGTTTTGTTATAATAAATCCTTTTGGCAGTGAATTGCTAGATTATTAACAATGGTTT
Unaligned ( gi|18 ): GTCAATTGAGTTGATCGTGAGAGTGATCACTGTTAGCATGAATAGGATAAACAGTATCAAGTTAACACATCATTAAATTTCCTCAAACATTAAGAGCAGCTGTTCTTATTTCAAATTCTTTTTGACAGTAAATTGCTAGCTT
Unaligned ( gi|19 ): CATACGTTGAGAGCAATTATTCTAATTTTAAGTCATTTTTGACAATGCATACTATTTCAGTATAAAGAGTTCCATTGTCTTCATCCAGAAGATTAATCAATTCATATGCACCTGAGTTACATGCATTACTATCATATTTTG
Unaligned ( gi|22 ): ATTTAAGCTATAATGTTTCTATGTTTTTTGTTGTTCAATTCTAACAGGTAGTCTGATATTTGGTATGTTTAATGTT
Unaligned ( gi|24 ): ATGTTTTTATTTTAAATCCTTTTTGACAGGAGATTAATCAATTTAAAAACACTTGGTGTGTTGAAATAATATTT
Unaligned ( gi|25 ): TTGAATATTTTTAAACATTAAAAACACCTGTTTTTATTTTAAAGGCTTTTTGACAGTAAAATGACAGTTTT
Alignments
lowQualScore : 2222 111 2222222222222 2222222222222222222 1111 1111111 11111 11111 111 1 1 222222222222 111111 111 1111
lowQualScore : 0 4444 44 2 3 2 555 7777 0 4 3 1 0 2 777 66 7777777777777 2 5 2222222222222222222 2 2 1 5 0 0 5555 2 5 2222222 11111 4 66666 2 1 888 1 0 2 2 1 1 4 1 3 2 0 1 66 2 66 666666666666 1 777 66 222222 4 66 66 8888 9999 1 5 77 6 1 6 3 777 7777 7
lowQualScore : . .... .. . . . ... .... . . . . . . ... .. ............. . . ................... . . . . . . .... . . ....... ..... . ..... . . ... . . . . . . . . . . . . .. . .. ............ . ... .. ...... . .. .. .... .... . . .. . . . . ... .... .
lowQualScore : 8 2222 22 6 1 2 888 1111 3 0 6 0 5 0 555 99 5555555555555 5 0 3333333333333333333 1 3 0 0 1 4 6666 2 0 9999999 11111 4 33333 9 0 000 0 9 6 6 0 0 4 1 3 9 2 0 11 6 11 333333333333 1 888 11 888888 4 11 11 1111 6666 0 4 77 0 0 7 2 555 2222 3
consensus : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
Reference ( family-2879 ) : AATTACAATAAA--CAATGTA--TTCTACATTAAACTGTT-AAACGAGNATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAACATGCTTGGATGAGTTGAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTNTTTTAGCTATAGTGTTTCTATATTTTACGTTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGNACATG-TGACCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ACGNCTAGTCCGTAATANTGGTATGAAACNGTTNATATTGACTGATTCTGGANACANCCAAA-CGTC-TGCATANCCTGCG--TTNTGTAAA--AT------CGAT--CGGACCTTA---AAGGC--C------CAATT-T--TG--ANN--ATTGTGA---TTNTCGTCAATTTCTCTTCTCTGGCTGTGTAC-NATTGACCGTA-GAATACA---ATTACT--TTTTGCTTAATAT
gi|1 : AATTACAATAAATCCAATGTA--TTCTACATTAAACTGTT-AAACGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATCGATCTTTT-GTCAATATT-AAGACGGTTAATAAATTTAAACATACTTGGATGAGTTGAATAA
gi|1 : ACCGTGTTTTAGCTATAGTGTTTCTATATTTTACATTTTCTAA---ACATAAATAAGTAGAAGGCTCAAA--TGTCTGTATTAAATGTCT-T----------------------TATATATATAAAGATGTACATG-TGACCATACATTCC----CTCCAATTTG----C--AATGTAT-----AT-ATCTC-T---ATGCCTAGTCCGTAATAATGGTATGAAACAGTTAATATTGACTGATTCAGGAAACATCCAAA-CGTC-TGCATAACCTGCA--TTATGTAAA--AT------TGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCCCTTCTTTGACTATGTAT-TATTGACCGTA-GAATACA---ATTA----TCTTGCTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgtgttttagctatagtgtttctatattttacattttctaaacataaataagtagaaggctcaaatgtctgtattaaatgtctttatatatataaagatgtacatgtgaccatacattccctccaatttgcaatgtatatatctctatgcctagtccgtaataatggtatgaaacagttaatattgactgattcaggaaacatccaaacgtctgcataacctgcattatgtaaaattgatcggactttaaaggcccaattttgaacattgtgattttcatcaatttcccttctttgactatgtattattgaccgtagaatacaattatcttgcttattcc
gi|10 : aattacaataaatccaatgtattctacattaaactgttaaacgagaatccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatcgatcttttgtcaatattaagacggttaataaatttaaacatacttggatgagttgaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTATAATTTGCATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TCTGT-TTTAAA-TGTCTGCATACCGGTATATATAAAAAGATGTACATG-TGATCATACATTCC----CGCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGCCTAGTCCGTAATAATGGTATGAAACTGTTAATATTGACTGATTCTGGAAACATCCAAA-CGTC-TGCATATCCTGC------------------------AT--TGGACTTTA---AAGGC--C------CAATT-T--TG--AAA--ATTGTGA-----CTCGTCATTTTGTCTTCTTTGACTATGTAT-TATTGACCGTA-GAttcc
gi|11 : ATTACAACAAA----ATATT--TTCTACATTAAACTATA-AAACGAGTATCC---CTGCATTTAAAACCCTTAATAT----ATTAAGTTGCAAGTTTCTTAAAAATTGA-TTTTT-GTCAATATT-AAGAAAGTTAAAAAATTTAAACATGTTTGGATGAGTTGAATA
gi|12 : acAACAAA--TAATTTAAATTCT---TCAAACT-TT-AA--GAGCAGCTGTTCTTATTTTAAATCCTTTTTTAC----AGTAAATTGCTAGCTTTATTAGCAATG-TTTTTT-ATTTGTATT-CAGAAGATTAATCAATTTAAAAACACTTGGgtatttaggtgtatataattttctcagatcttcataacatgataaataaatatgaaatggtattcgtcttcaatgtcatttaagtcacaacataaacatttatatttatctcttgccatatt
gi|13 : cagtcaattgagtttatcgtgagagtgatcattgttagcatgaataggataaaaaatacaagttAATTACAATA----CAATGCA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGCTGCAAGTTTGTTTAAAATAGATTTTTT-GTCAATATT-AAGAAGGTTAATAAATTTAAATATtttattaaaatagtattttggaatgtacattttccttaaat
gi|14 : aAATTTCAATA----CAATGTA--TTCTA--------TGTT-AAAC------------------TG------TTAA-AC----ATTAAGTTGCAAGTTTGTTTAAAATTGATTTT---GTCAATATT-AAGAAAGTTAATAAATTTAAACATGCTTGGATGAGTTGATTAAatatatgcttgccatattaaactttgttaattttaatgatttttagaaggcaatatggtagataagtgaatatgaaatgtacattcatttt
gi|15 : aATTACAATA----CAATGTT--TTCTACATCGAACTGTT-AATCTAGTATTC---ATGAGTTTGAAACCCTTAATAC----AACAAGTCGCAAGTTTGTTTAAAATAGATTTTTTGGTCAATATTAAAGAAGATTAATAAATTTGAGC-TGTTTGGATGAGTTGAATAAtaataaggtatatatataattttctcagatctttataaaatgggcaaataaatatgaaatggtattcgtcttcaatgttatttaattcacactattaccgttt
gi|17 : atACAATA----CAATGTT--TTCTATATTAAACCATT-AATCAAGTATTC---CAGAGTTTGAAACCCTTAACAC----AATAA-----------GTTTAAAATTGATTTTTC-GTCAATATT-AAGAAGGTTGATAAATtatttaggtatacatgtacatttattacttttctaagacaattataaaatgggaaaatgagtatgaaatg
gi|2 : aaaAATAACAATA----CAATGTA--TTCTACATCAATCTTTT-AAACGAGTATCC---CTGAGTTTGAAACCCTTAATACGTACAATAAGTTGCAAGTTTGTTTAAAATTGATTTTTT-GTCAATATT-AAGGAGGTTAATAAATTTAAACATGCTTGGATTTGTTGAATAacagtacgtttgtatacctaactctgttg
gi|2 : aACCGTTTTTTAGCTGTAGTATTTCT------T-CATTTTCTAA---ACTTATATAAGAAGAAGGTTCAA------------------TCTGT-TTTAAAATGTATG--------TATATATATAAAGATGTACAAG-TGATCATACATTTC----TGCCAATCTG----C--AATGTAT-----AT-ATCTC-T---AAGCGTAG-CCGTAGTAATGGTA-----------A-ATTTACCGATTCTTGAAACATCCAAA-CGTC-TGCATATCCTTCG--TTATGTAAA--AT------CGAT--CGGACTATA---AAAGC--C------CAATT-T--TG--AGA--ATTGCGA---GTTTCGTCAATTACTTTTCTctatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgttttttagctgtagtatttcttcattttctaaacttatataagaagaaggttcaatctgttttaaaatgtatgtatatatataaagatgtacaagtgatcatacatttctgccaatctgcaatgtatatatctctaagcgtagccgtagtaatggtaaatttaccgattcttgaaacatccaaacgtctgcatatccttcgttatgtaaaatcgatcggactataaaagcccaattttgagaattgcgagtttcgtcaattacttttct
gi|20 : aaataacaatacaatgtattctacatcaatcttttaaacgagtatccctgagtttgaaacccttaatacgtacaataagttgcaagtttgtttaaaattgattttttgtcaatattaaggaggttaataaatttaaacatgcttggatttgttgaatactatttaggtatatataattttctcagatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATTACAATAAA----ATGTT--TTATACATTAAACTTAT-AAATGAGTATCC---CTGAGTTTGAAACCATTAATAC----AAGAAGTTGCAAGTTAGTTTAAAACTGATTTTTT-GTCAATATT-TAGAAGGTT
gi|21 : aAATTACAA--AA--CAATGTA--TTCTACATTAAACTATT-TAACGAGAGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCA
gi|23 : aAATTACAATA----CAATGTA--TTCTACATTAAACTGTT-AAATGAGAATCC---CTGAGTTTGAAACCCTTAATAC----AATAA
gi|26 : aAATTACAATAAATACAATGTA--TTCTACATTAAACTGTT-AAA
gi|3 : aTTCTATATTTTATGTTATTTAACAAAGTTAGATAATAAGACCTTTTAAA--AG-------------TTACC-TTTATT-TCGCTA--------TATAAATACAATGAAGAACATAATGCCCAT-C-TTGCACGGCGCCA--TTG----CGTAATATATTTGAAATTATCTCAG---ACGATTAGT---TATTACTGGTATAAAACTATTTATATCAACTGATTATGGATATAACAAAA-ATTCGTGAA-AACCTGCG--TTTTATATA--ATACCACGTGA---CGTACCTTA---AACGG--C------CAG---T--TG--ATG--A-TGTGAGGGTCATTATCAATTTCTTTTCTCCGGTTGTATAC-AACAGAACTTATTATTACA---ATTATTACTTTTGCT--ATAT
gi|4 : agaataaATATT-AAGAAAGTTGATAAATTTGTAAATGCTTGGATGAGTTGAACAAagtttaacatctaaccattcttacataccgtgtaatacataaaggggggctaccaagttcggtgtatagtgatagagtgttagatgacatattacgttcaataaccattcacaaaaaatgttaatgatcgttttctttatgtaccctcacacttcacagctatgatttagaatagacaaaacacatgaacaggacattaacgggaacttccttgttcctggtt
gi|4 : TTTAGCTATAGTGTTTCTATGTTTTACATTTTCTAA---ACTTAAATAAGAAGAAAGTTCAAA--TG-------------TCTGT-TTAAAA-TG---------------------AAAG---TACGTG-TGACCATCCATTCC----CGCCAAT-------------------------GTCTC-T---AAGCCTAGTTCGTAATAATGGTATGAAACAGTTAATATCGAGTGATTATGGAAACACCCAAA-CGTT-TGCATATCCTGCG--TTAAATAAA--AT------AGAT--CGGACTTTA---AAGAC--C------CAATT-T--TG--AGA--ATTGTGA---TTTTCGTCAATTTCTCTTtatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttagctatagtgtttctatgttttacattttctaaacttaaataagaagaaagttcaaatgtctgtttaaaatgaaagtacgtgtgaccatccattcccgccaatgtctctaagcctagttcgtaataatggtatgaaacagttaatatcgagtgattatggaaacacccaaacgtttgcatatcctgcgttaaataaaatagatcggactttaaagacccaattttgagaattgtgattttcgtcaatttctctt
gi|5 : atattaagaaagttgataaatttgtaaatgcttggatgagttgaacaatatttaggtatatgtaattttctcggatcattataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG----T--AATACAT-----AT-GTCTC-TCAGACAATTAGT---TAATATTGGTATACAACTGTTTATATTAACTGCTTTTGGATATAAGCAAATCTCC-TG-A-AACCTGCGGCTTGTATAAT--AT------CA----CGTACCTTA---GACGA--C------CAATTGT--TA--ATACGATTGTCA---TTATC---AATTTATCTTCTTTGGTTGTATAC-AA-------TA-GAAC-------TTGCT--TTTT
gi|6 : AATTACAA--AA--CAATGTA--TTCTACATTAAACTGTTTAAACGAGGGTCC---CTGAGTTTGAAACCCTTAATAC----AATAAGTTGCAAGTTTGTTTAAAATATATTTTTT-GTCAATATT-AAGAATGTTAATAAATTTAAACATACTTGGATGAATTGAATAAtgattttttcaattatagctccaaccaaaagttaactattgttatcctgtaacatgtaatgggaatctaccaagttcagaatatattgataaagtgtttacattcaataactatttgtaaaatttccagattttctgctttaatgtgcacccacacttcacagcacagctataaaatagacaaaacatatgaatcgaaaaggttaaacatggtatctacgggaacttccttattactagt
gi|6 : ACCGTAGTTTAGCTATAGTGTTTTTATAATTAACATTTTCTAA---ACTTAAATAAGAAGAAGGTTCAAA--TG-------------TATGT-TTAAAA-TTTCTG----------TATATATAAAGATGAAtatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataaccgtagtttagctatagtgtttttataattaacattttctaaacttaaataagaagaaggttcaaatgtatgtttaaaatttctgtatatataaagatgaaa
gi|7 : aattacaaaacaatgtattctacattaaactgtttaaacgagggtccctgagtttgaaacccttaatacaataagttgcaagtttgtttaaaatatattttttgtcaatattaagaatgttaataaatttaaacatacttggatgaattgaataatatttaggtatatatagttttctcagatcattataaaatgggcaaataagtatgaaatgttattcgtcttcagtgtcatttaagtcactacaaaaacattttctttggtctcttgcaattttttatgtcgttctgtttcaatagctagtttatgtgataataTTTTTGCAATGATATTTCTGTATTAAATGTTATCTAACATAGTTAGATCATAAGACCTTTTAAAATTG-------------CCTTTATTT----CG-CTA--------TATAGATATAATGAAGACCATA-ATATTGTACTTGCA----TGCCAGTGT----------TATAT-----AT-ATC-A-G---ACGATTGGT---TAATACTGGTATAACATCATTTACTTTAACTGATTCCAGATAAAACAAAA-TCTCGTGTA-AACCTGCG--TTTTGTAAACTAT------CA----CGTACCCC-----AGGCGAC------CAATT-C--CT--GGT--GTAATGA---GTGTCATCAATTTCATTTCTCTGGTTGTGTACAAAATAACTA-A-TAATACACTTATTACT--TTTTGCTTAATATa
gi|8 : CTA--------TATAAATACAACGAAGAACATA-TTGTCATA-ATTGCA---CGCCATTGTGTACAC--AATATAT-----AT--TCTC-TCAGACGATTAGT---TAATATTGGTATTAAATAATTTATATTAACTGATTCTGGATATAACCAAA-TCTCGTGAAAATCC-GCG--TTTTGTAAA--AT--------ATCACGTACCCTAGATAAGAC--TACAAAACAAAT-TGATGACACG--AGTGCCA---TTA---TCAATTTGTTTTCTCTGGatatagtattaaccaatatttaactattcctatatattgtataat
gi|9 : gaacaggtgtatggttttatttagttccatggtcaagaataatgacagagacctttcaaaagttacctttatttcaTTTCTATATTTTACATTTTCTAA---ACATAAATAACAAGAAGGCTCAAA--TG-------------TCTGT-TTTAAA-TGTCTG--------TATATATATAAAGATGTACCTG-TGACCATACATTCC----ATCCAATTTG----C--AATGTAT-----AT-ATCTC-T---AAGTCTAGTCTGTAATAATGGTATGAAACAGTTAATATTGACTGACTCGGGAAACATCTAAA-CGTC-TGCATATCCTGCA--TTATGGAAA--AT------CGAT--CGGACTTTA---AAGGC--C------CAATT-T--TG--AAC--ATTGTGA---TTTTCATCAATTTCTCTTCTTTGACTATGTAT-TATTGACCGTA-GAt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AGTCAGTGGATTTGGTATGGTGAGAGTGACCATTGTTAACATGTAGAGGATATACAGTATTATATAAATATTAGATAAAGTCCTTTTCAAACATTAAGAACCGTTTTGTTATAATAAATCCTTTTGGCAGTGAATTGCTAGATTATTAACAATGGTTT
Unaligned ( gi|18 ): GTCAATTGAGTTGATCGTGAGAGTGATCACTGTTAGCATGAATAGGATAAACAGTATCAAGTTAACACATCATTAAATTTCCTCAAACATTAAGAGCAGCTGTTCTTATTTCAAATTCTTTTTGACAGTAAATTGCTAGCTT
Unaligned ( gi|19 ): CATACGTTGAGAGCAATTATTCTAATTTTAAGTCATTTTTGACAATGCATACTATTTCAGTATAAAGAGTTCCATTGTCTTCATCCAGAAGATTAATCAATTCATATGCACCTGAGTTACATGCATTACTATCATATTTTG
Unaligned ( gi|22 ): ATTTAAGCTATAATGTTTCTATGTTTTTTGTTGTTCAATTCTAACAGGTAGTCTGATATTTGGTATGTTTAATGTT
Unaligned ( gi|24 ): ATGTTTTTATTTTAAATCCTTTTTGACAGGAGATTAATCAATTTAAAAACACTTGGTGTGTTGAAATAATATTT
Unaligned ( gi|25 ): TTGAATATTTTTAAACATTAAAAACACCTGTTTTTATTTTAAAGGCTTTTTGACAGTAAAATGACAGTTTT