lowQualScore : 111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111 11111111111111111111111111
lowQualScore : 11 33 1 7777 2222 555555555555555555555555555555555555555555555555555 6666666666666666666666666 1 1 444444444444 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 333 1 11 11 11 888888888888888 666666666666666666666666666666666666666666666666666666666666 11 22222 1111111111111 11 11 111 00000000000000000 2 77777777777777777777777777 1 1 11111 6666 1
lowQualScore : 7 7 7 88 00 5 6666 0 6 3 9 9999 6 000000000000000000000000000000000000000000000000000 6666666666666666666666666 6 0 2 3 444444444444 22 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 222 2 3 000 66 3 88 0 6 4 6 33 44 777777777777777 66 5 999999999999999999999999999999999999999999999999999999999999 55 33 11111 2 0 9999999999999 1 2 3 11 3 55 9 6 11 777 22222222222222222 1 6 2 0 33333333333333333333333333 5 0 4 6 0 44444 3333 6
lowQualScore : . . . .. .. . .... . . . . .... . ................................................... ......................... . . . . ............ .. . ................................................................................................................... . ... . . ... .. . .. . . . . .. .. ............... .. . ............................................................ .. .. ..... . . ............. . . . .. . .. . . .. ... ................. . . . . .......................... . . . . . ..... .... .
lowQualScore : 0 3 3 33 33 0 7777 7 7 2 8 5555 0 444444444444444444444444444444444444444444444444444 0000000000000000000000000 0 7 0 3 000000000000 00 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 000 5 0 333 77 3 77 7 0 0 0 00 55 000000000000000 66 7 222222222222222222222222222222222222222222222222222222222222 99 66 66666 9 8 9999999999999 1 0 1 88 5 88 6 0 00 555 22222222222222222 2 0 5 2 77777777777777777777777777 5 8 8 8 8 33333 0000 0
consensus : CTGGAACACCGGATTTATTTATCAACGT--GTGACAGTTTAAATACTG----TTACCCATTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGCTAGTC--TTG-GG--ATTNAA--CATT------AGTATTTTGCGTGAGATATAA----------TAATAAAT-----T-TTATTTAATAACTTGCTAGAAAACTTT-AAATATCGG-ACTT-TAAAACACATATNTAATACCACAT--GCA---TACGT-------GCTGTTCTAT-AAACA---TATAATAG-ACCCTCCTTG-TAAATTGCT----TCAC-ACACAAGCGACTGTAATAAAAAAATAAAATAAAAAAATAAAAACAAACCTGATACTNATGTCANTNAAAC-G-ATGACAAACATTACTA-GGATTTGTTCTAATGCTTGAAGATGTTANTCAGATTTTGAANNTTGNNGTAACTCTGCTCTGCATATGAAACATGCAACACC-CCTCAC---NCC-----CAC------T-A-G------CTTAATTAA-GCGGT-ANTT-A-TTC---TCG-AGCAACACTGAATGA----GCTCCATGATTCCAAGGA----------ATCAGAAATAATAATAACACNNGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC--AA--CATAT----------ATATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTNCATTCTGT---------TATTTCCAGAC-GGTT-ACATGTCATTTGAGGACATATAATTTTGTACCAACTAGA--CAAGATAACTT--ATTACATAGACAA
Reference ( gi|1 ) : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATACATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGCTGGTCT-TTGAGG--ATTTAA--TACT------AGTATTTTGCGTGAGATATAA----------TAACAGCT-----T-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATGTAAAACACATATTTAATATCATATAGGCA---TACAT-C-----GCTGGTCTGT-GAACATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTATTC-----AATAAAAACAAACCTGATACTTATTTCAGTTAAAC-G-ATGACAAACATCGCTA-GGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGTATTTCTACCCTACATATGAAACATGCAACACC-CCTCAC---TCC-----CAC------T-A-G------CTTAATTAA-GCGGT-ACTT-A-TTC---TCA-AGCAACACGGAATGT----GTTCTATGATTCCAAGAA----------ATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATC--AA--CATAT-T-------CAGGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAA--CAAGATAACATCGATTACATAGAAAAAATGTAA
gi|8 : CTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTAAATACTGC----TAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T--TCTCTTATAC----------------------A--TA--------AGTATTTTGCGTGAGATATAA----------TAATAAAT-----A-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAACTTGTAAAGCACATATCTAATACCA------CA---TACGT-A-----GTTGTTCTAT-AAA
gi|2 : tgtacatatcatgcgttatttTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTAAATACTG----TTACCCATTTTGAGCGGTTAATAG-TGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTGTCTATTG-GA--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATTGATAAGT-----T-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTTTAAAACACATATATAATACCACATACGCATCGTACATACTAGTAGCGGGTCTAT-GAA
gi|7 : tcgtctgGAACACCAGATT-----ATAAACATTTGTGAAAGTTTAAATACTG----TTGCCCGCGG-GAGTGGACGACA----TATTTCGCTGAAATAATAG---GAACTGCGAGTCGCC-GTC--ATGACA--ATTTAA--CATTACCATAAATATCTTACTTGAGGTATAA----------T--CAGAT-----T-aaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|6 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcTTGAGCGG-TAATCAGTACATTTCGATGAATTGGTAA---GAACTGTTATCAGCTA--CC-TTGTGGCAATTTAA--CATT------CGTGTTAGTCGTCAGGTATgaaatttt
gi|3 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtcattttacaaagactgtaacacgcGAAATAGTA-TA-GACCC-TTATCTGCTAG--------GG--ATTACA--CATT------AGCATTTTGTGTAAGATATAA----------TAATAACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAA------------TAAAACATATCTT--GTATCACAT--GCA---TA----------GCTGTTCTTTAAAACA---TATAATAG-ACCCTCCTTG-TAAATTGCT----TCAC-ACACAAGCGACTGTAATAAAAAAATAAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAACTG-ATGACTAAAATTACTA-TGAAATGTTATAATGC
gi|2 : aAAAAACAAACCTGATATTAATAT-ATTTAAAT-TTATGACAAACATTACTA-GGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACTCTGCTCTA-------AACAT----CACC-CCTCAC---ACC-----TAC------T-A-G------C-------A-AC---------A-CTC---TCA-AGCAACACTGAATGA----GTTCAATGAATCTAAGAA----------ATCAGA--TAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATC--AA--tgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgAAAC-A-AAAAAAAACCCTGATACGGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT----------TGCATATNNNNNNNNNNNNNNN-NNNNNN---NNN-----NNN------N-N-N------NNNNNNNNN-NNNNN-NNNN-N-NNN---NNN-NNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNN----------NT----AATAATACTG--GCAAGAAAA----TGTTTTAACGGTCTTAGATATGACAACGGACAATC--AAACCAT--------------GTATAGCAACTGTTTTCAACG-CAAGGTTGTGTTACACTTGTCCTTAGTGT---TATTTCCAGCCTT------GTT-TCATGTCATTTTAGGACATATAACTTTGTA-CAAATTA
gi|12 : cacgtccttgtaaattgctgacctcataaacatgcgataacaactttaaaaaaaaaATGAAATATACAACACC-TCTAATGCTTCCATGG-CAT------T-G-G------CTTAATTAA-GTGGTAACCG-A-TCT---TCC-AGCAAAACCGAATGA----AATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACAttacattgaaaa
gi|11 : TGACATATGTAACACC-CCTTACA--TCC-----CACACTCCTT-GCG------CCAGATTAA-GCGGT-AATT-A-TTTGT-TTG-AGCAACACTGAGAGA----GCTCTATGAATTAAAGGA----------ACCAGAA
gi|5 : tatagagtctcttcactagtatGAAACAGACAACACC-CACCAT---GCC-----CAC------T-A-GAGCCGGTTTAATC----CGG--AGCT-A-TTG---TCA-AGCAACA----ATGTTTGAGTTCCATGATTCCAA------------------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATC--AA---ATA-----------ATATACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGAC-AGGTTATTTGTCATTTGATGACTTAGATCTTTGAAT-AACCAGA--CAACATAACTT--ATTACATTGACAA
gi|14 : cgACATGTAATATC-CCTCAC---TCCCGTGACAC------C-A-G------CTTGA--------GT-ACTT-T-TTCGTATCG-AGCAACATACAAAGG----ACTGAATGATTCGAAGTA----------ATACGAAATAATGATAttataact
gi|13 : ATGAAACACCACCTCAC---GCC-----CAT------TTC-G------CCTACTTGATGTGA--ATTTCA-TTT---TCG-GACATT-TTGAATGA----ATACCGTGGTCCCAAGGG----------ATCAGAAACAATAGCAACA
gi|17 : A-GCGGT-GTTT-AATTT---TCGGAGAAACACAGAATGA----GCTCTAATATTCCAAGAA----------AGCAGAAACAATAACAATA
gi|15 : TC---TCA-AGCAACATTAAATGA----GTTTTATG-TTCCAATGA----------ATCAGAAATGATAACCACACtt
gi|3 : cagtgttcattctcaTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTCAAAA--CATAT-tgag
gi|9 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACC--TA--TATATATAATCACACATATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGA--CAAGATAACTT--ATTACATatatcatt
gi|10 : cactgctacgTATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTtaaacaat
gi|19 : aCATGTTATTTGGGGACATATAATTTTGTATCGACTAGA--TCAGATAACTT--ATTACATAGATAAcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|10 : gGAGGACATATAATTTTGTACCA--TCAAGGCAAGATAACTT--ATAACATAGA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 1111 1111111111 44444444444444444 222222222 3333333333333 11 22222 1 55555555 22 33333 1 333 2 1 5555 1 1111 333333 111 1111 11111111111111 333333333333333333333333333333333333333333 111 1111111111 44444444444444444444 333333333 22 1 11
lowQualScore : 2 2 3 3 33 1 11 7777 5 3 5 3 3333 3333333333 5 55555555555555555 3 888888888 7777777777777 11 00000 8 3 0 3 33333333 2 1 77 77777 4 3 555 4 0 2 3 6666 3 6 3333 333333 7 2 0 4 222 555 6666 66 2 3 11 0 0 1 0 22 22 99999999999999 5 33 5 66 333333333333333333333333333333333333333333 5 2 8 4 222 4 1 1 2 7777777777 0 0 0 22 1 00000000000000000000 0 1 222222222 44 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . . .... .......... . ................. . ......... ............. .. ..... . . . . ........ . . .. ..... . . ... . . . . .... . . .... ...... . . . . ... ... .... .. . . .. . . . . .. .. .............. . .. . .. .......................................... . . . . ... . . . . .......... . . . .. . .................... . . ......... .. . .. . .
lowQualScore : 5 0 2 2 88 0 00 0000 0 8 6 8 4444 0000000000 2 00000000000000000 3 000000000 0000000000000 00 00000 0 5 0 2 22222222 5 0 55 88888 7 3 000 0 0 5 3 7777 3 7 3333 777777 3 5 2 5 222 222 5555 00 5 2 55 7 7 0 7 00 00 55555555555555 6 22 0 00 999999999999999999999999999999999999999999 7 6 9 4 555 0 1 6 5 5555555555 9 7 5 00 0 66666666666666666666 8 0 000000000 22 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGCT-GTC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGT-AC-TT-TAAAACACATATCTAATACCACATA-GCATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTG-TAAATTGCTGAC-TCAC-AAACAAGCGACTGCAATAAAAAAAT-A--TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGTA-CTCTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAATAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAA-ATAT--ATA----------TATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAACACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCATTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGCTAGTC--TT--G-G-G--ATTNAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTAATAACTTGCTAGAAAACTTT-AAATATCGG--AC-TT-TAAAACACATATNTAATACCACAT--GCATACGT-GCTGTTCTATAAA-CA---TATAATAG-ACCCTCCTTG-TAAATTGCT----TCAC-ACACAAGCGACTGTAATAAAAAAATAAAATAAAAAAATAAAAACAAACCTGATACTNATGTCANTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAATGCTTGAAGATGTTANTCAGATTTTGAANNTTGNNGTAACTCTGCTCT-GCATATGAAACATGCAACACC-CCTCACN-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGCTCCATGATTCCA----------AGGAATCAGAAATAATAATAACACNNGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAACATAT--ATA----------TATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTNCATTCTGT---------TATTTCCAGAC-GGTT-ACATGTCATTTGAGGACATATAATTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGCTGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAA-TG-TAAAACACATATTTAATATCATATAGGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTATTC-----AATAAAAACAAACCTGATACTTATTTCAGTTAAA-C-GATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGTATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATCAACATATTCAGG----------TTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : ATATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGAC-aatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAtggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCTTCACTAGTAT-TGACATATGTAACACC-CCTTACATCC-------C-----ACACTCCTT-GCG------CCAGATTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCATGGC-----AT------T-G-G------CTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-CC-------C-----AT------TTC-G------CCTACTTGATGTGA-ATTTCA-TTT---TCG-GACATT-TTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-CC-------CGTGACAC------C-A-G------CTTGA--------GTACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACAC
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATAtgag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAAtt
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAAT-AGTGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTGTCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGT-ACTTT-TAAAACACATATATAATACCACATACGCAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAATT-TATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACTCTGCTCT--------AAACAT----CACC-CCTCACA-CC-------T-----AC------T-A-G------C-------A-AC--------A-CTC---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAG--ATAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATCAAatactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTA---TAGACCCTTATCTGCTAG----------G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA---------------AA-ACATATCTTGTATCACAT--GCATA----GCTGTTCTTTAAAACA---TATAATAG-ACCCTCCTTG-TAAATTGCT----TCAC-ACACAAGCGACTGTAATAAAAAAATAAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAA-CTGATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTCAAAACAT--ATA----------TATgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTG-TAAATTGCTGACCTCAT-AAACATGCGA------TAACAACTT----TAAAAAAA-AAAAACAAA---------------AA-AAAA-C-CCTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT----------T-GCATATNNNNNNNNNNNNNNN-NNNNNNN-NN-------N-----NN------N-N-N------NNNNNNNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----AATAAT------ACTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGACAATCAA-AC-C--ATG----------TATAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTAcatt
gi|5 : cacgGAAACAGACAACACC-CACCATG-CC-------C-----AC------T-A-GAGCCGGTTTAATC----CGG-AGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCC------------------------AATAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATCAA-ATA---ATA----------TACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGT-AATCAGTACATTTCGATGAATTGGTA---AGAACTGTTATCAGCTA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATA---GGAACTGCGAGTCGCC-GTC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T---------TC------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGA-AC-TTGTAAAGCACATATCTAATACCACAT--ACGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATAT--ATAATCACACATATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 1111 1111111111 3333333333333333333 222222222 3333333333333 11 22222 1 3333333 333333333333 1 222 11 1 3333 1 111111 4444 1111 111 1111 333333333333333 333333333333333333333333333333333333333333 111 1111111111 555555555555555555 333333333 1 11
lowQualScore : 1 2 3 3 33 1 11 7777 5 3 5 3 3333 3333333333 5 8888888888888888888 3 888888888 7777777777777 11 00000 8 1 0 3 3333333 2 0 999999999999 1 3 111 1 66 3 6666 3 888888 4444 2222 2 0 3 000 444 6666 66 2 3 11 1 1 000000000000000 5 33 5 66 333333333333333333333333333333333333333333 5 2 8 4 222 4 1 2 7777777777 11 11 1 1 111111111111111111 0 222222222 6 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . . .... .......... . ................... . ......... ............. .. ..... . . . . ....... . . ............ . . ... . .. . .... . ...... .... .... . . . ... ... .... .. . . .. . . ............... . .. . .. .......................................... . . . . ... . . . .......... .. .. . . .................. . ......... . . .. . .
lowQualScore : 0 0 2 2 88 0 00 0000 0 8 6 8 4444 0000000000 2 7777777777777777777 7 000000000 0000000000000 00 00000 0 0 0 2 0000000 5 2 222222222222 0 3 555 0 55 3 0000 3 777777 0000 7777 5 2 5 222 555 5555 00 5 2 55 0 0 444444444444444 6 22 0 66 999999999999999999999999999999999999999999 7 6 9 4 555 0 1 5 5555555555 11 55 3 0 777777777777777777 8 000000000 0 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT---ATAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAA---ATAC--A--------TATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAAGCGACTGCAATAAAAAAAT---ATAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAATAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATCAA---ATAT--A--------TATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGC-TGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATG-TAAAACACATATTTAATATCATATA-GGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATT--ATTCAA---TAAAAACAAACCTGATACTTATTTCAGTTAAA-C-GATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGT-ATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATCAAC--ATATTCA--------GGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : ATATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGACTGGaatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-CTTCACTAGTAT-TGACATATGTAACACC-CCTTACATCC-------C-----ACACTCCTT-GCG------CCAGATTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCATGGC-----AT------T-G-G------CTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-CC-------C-----AT------TTC-G------CCTACTTGATGTGA-ATTTCA-TTT---TCG-GACATT-TTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-CC-------CGTGACAC------C-A-G------CTTGA--------GTACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACACTG
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATATTag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAA
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAAT-AGTGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTG-TCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTT-TAAAACACATATATAATACCACATACG-CAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAATT-TATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACT-CTGCTCT--------AAACAT----CACC-CCTCACA-CC-------T-----AC------T-A-G------C-------A-AC--------A-CTC---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAG--ATAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATCAA---atactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTA---TAGACCCTTATCTGC-TA---------G-G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA--------------AA-ACATATCTTGTATCACAT--G-CATA----GCTGTTCTTTAAAACAT---ATAATAGA-CCCTCCTTGTAAAT-TGCT----TCACACA-CAAGCGACTGTAATAAAAAAATAAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAA-CTGATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTCAA---A-AC--A--------TATATATCATTgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTGTAAAT-TGCTGACCTCATAAA-CA------TGCGATAACAACTT----TAAAAAAA-AAAAACAAA---------------AA-AAAA-C-CCTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT-----------T-GCATATNNNNNNNNNNNNNNN-NNNNNNN-NN-------N-----NN------N-N-N------NNNNNNNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----------AATAATACTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGACAATCAA---AC-C--A--------TGTATAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTA
gi|5 : cacgGAAACAGACAACACC-CACCATG-CC-------C-----AC------T-A-GAGCCGGTTTAATC----CGG-AGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCCA----------A--------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATCAA---ATA---A--------TATACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGT-AATCAGTACATTTCGATGAATTGGTA---AGAACTGTTATCAGC-TA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATA---GGAACTGCGAGTCGC-CG-TC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T---------TC-------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAAC-TTGTAAAGCACATATCTAATACCACATA---CGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATATAT--AATCACACATATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 1111 1111111111 3333333333333333333 222222222 3333333333333 11 22222 1 3333333 333333333333 1 222 11 1 3333 1 333333 44444 1111 111 1111 333333333333333 333333333333333333333333333333333333333333 111 1111111111 333333333333333333 333333333 1 11
lowQualScore : 1 2 3 3 33 1 11 7777 5 3 5 3 3333 3333333333 5 8888888888888888888 3 888888888 7777777777777 11 00000 8 1 0 3 3333333 2 0 999999999999 1 3 111 1 66 3 6666 3 888888 0 44444 2222 2 0 3 000 444 6666 66 2 3 11 1 1 000000000000000 5 33 5 66 333333333333333333333333333333333333333333 5 2 8 4 222 4 1 2 7777777777 11 11 2 1 444444444444444444 0 222222222 6 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . . .... .......... . ................... . ......... ............. .. ..... . . . . ....... . . ............ . . ... . .. . .... . ...... . ..... .... . . . ... ... .... .. . . .. . . ............... . .. . .. .......................................... . . . . ... . . . .......... .. .. . . .................. . ......... . . .. . .
lowQualScore : 0 0 2 2 88 0 00 0000 0 8 6 8 4444 0000000000 2 7777777777777777777 7 000000000 0000000000000 00 00000 0 0 0 2 0000000 5 2 222222222222 0 3 555 0 55 3 0000 3 777777 7 00000 7777 5 2 5 222 555 5555 00 5 2 55 0 0 444444444444444 6 22 0 66 999999999999999999999999999999999999999999 7 6 9 4 555 0 1 5 5555555555 11 55 7 0 111111111111111111 8 000000000 0 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACA--CATATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ATA--CATATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGC-TGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATG-TAAAACACATATTTAATATCATATA-GGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTA---TTCAA---TAAAAACAAACCTGATACTTATTTCAGTTAAA-C-GATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGT-ATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATC---------AAC-ATATTCAGGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : ATATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGACTGGaatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-CTTCACTAGTAT-TGACATATGTAACACC-CCTTACATCC-------C-----ACACTCCTT-GCG------CCAGATTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCATGGC-----AT------T-G-G------CTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-CC-------C-----AT------TTC-G------CCTACTTGATGTGA-ATTTCA-TTT---TCG-GACATT-TTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-CC-------CGTGACAC------C-A-G------CTTGA--------GTACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACACTG
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATATTag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAA
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAAT-AGTGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTG-TCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTT-TAAAACACATATATAATACCACATACG-CAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAATT-TATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACT-CTGCTCT--------AAACAT----CACC-CCTCACA-CC-------T-----AC------T-A-G------C-------A-AC--------A-CTC---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAG--ATAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATC---------AA--atactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTA---TAGACCCTTATCTGC-TA---------G-G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA--------------AA-ACATATCTTGTATCACAT--G-CATA----GCTGTTCTTTAAAACAT---ATAATAGA-CCCTCCTTGTAAAT-TGCT----TCACACA-CAAGCGACTGTAATAAAAAAAT-AAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAA-CTGATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTC---------AA--A-A--CATATATATCATTgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTGTAAAT-TGCTGACCTCATAAA-CA------TGCGATAACAACTT-----TAAAAAAA-AAAAACAAA---------------AA-AAAA-C-CCTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT-----------T-GCATATNNNNNNNNNNNNNNN-NNNNNNN-NN-------N-----NN------N-N-N------NNNNNNNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----------AATAATACTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGACAATC---------AA--AC---CATGTATAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTA
gi|5 : cacgGAAACAGACAACACC-CACCATG-CC-------C-----AC------T-A-GAGCCGGTTTAATC----CGG-AGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCCA----------A--------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATC---------AA--ATA---ATATACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGT-AATCAGTACATTTCGATGAATTGGTA---AGAACTGTTATCAGC-TA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATA---GGAACTGCGAGTCGC-CG-TC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T---------TC-------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAAC-TTGTAAAGCACATATCTAATACCACATA---CGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATATATAATCACA--CATATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 1111 1111111111 3333333333333333333 222222222 3333333333333 11 22222 1 3333333 333333333333 1 222 11 1 3333 1 333333 44444 1111 111 1111 333333333333333 333333333333333333333333333333333333333333 111 1111111111 222222222 1111 333333333 1 11
lowQualScore : 1 2 3 3 33 1 11 7777 5 3 5 3 3333 3333333333 5 8888888888888888888 3 888888888 7777777777777 11 00000 8 1 0 3 3333333 2 0 999999999999 1 3 111 1 66 3 6666 3 888888 0 44444 2222 2 0 3 000 444 6666 66 2 3 11 1 1 000000000000000 5 33 5 66 333333333333333333333333333333333333333333 5 2 8 4 222 4 1 2 7777777777 11 11 2 1 666666666 99 777 7777 0 222222222 6 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . . .... .......... . ................... . ......... ............. .. ..... . . . . ....... . . ............ . . ... . .. . .... . ...... . ..... .... . . . ... ... .... .. . . .. . . ............... . .. . .. .......................................... . . . . ... . . . .......... .. .. . . ......... .. ... .... . ......... . . .. . .
lowQualScore : 0 0 2 2 88 0 00 0000 0 8 6 8 4444 0000000000 2 7777777777777777777 7 000000000 0000000000000 00 00000 0 0 0 2 0000000 5 2 222222222222 0 3 555 0 55 3 0000 3 777777 7 00000 7777 5 2 5 222 555 5555 00 5 2 55 0 0 444444444444444 6 22 0 66 999999999999999999999999999999999999999999 7 6 9 4 555 0 1 5 5555555555 11 55 7 0 777777777 22 222 0000 8 000000000 0 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACACAT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACACAT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGC-TGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATG-TAAAACACATATTTAATATCATATA-GGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTA---TTCAA---TAAAAACAAACCTGATACTTATTTCAGTTAAA-C-GATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGT-ATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATC----------A--ACATATTCAGGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : ATATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGACTGGaatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-CTTCACTAGTAT-TGACATATGTAACACC-CCTTACATCC-------C-----ACACTCCTT-GCG------CCAGATTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCATGGC-----AT------T-G-G------CTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-CC-------C-----AT------TTC-G------CCTACTTGATGTGA-ATTTCA-TTT---TCG-GACATT-TTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-CC-------CGTGACAC------C-A-G------CTTGA--------GTACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACACTG
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATATTag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAA
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAAT-AGTGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTG-TCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTT-TAAAACACATATATAATACCACATACG-CAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAATT-TATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACT-CTGCTCT--------AAACAT----CACC-CCTCACA-CC-------T-----AC------T-A-G------C-------A-AC--------A-CTC---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAG--ATAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATC---------AA--atactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTA---TAGACCCTTATCTGC-TA---------G-G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA--------------AA-ACATATCTTGTATCACAT--G-CATA----GCTGTTCTTTAAAACAT---ATAATAGA-CCCTCCTTGTAAAT-TGCT----TCACACA-CAAGCGACTGTAATAAAAAAAT-AAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAA-CTGATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTC---------AA--A-ACAT----ATATATCATTgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTGTAAAT-TGCTGACCTCATAAA-CA------TGCGATAACAACTT-----TAAAAAAA-AAAAACAAA---------------AA-AAAA-C-CCTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT-----------T-GCATATNNNNNNNNNNNNNNN-NNNNNNN-NN-------N-----NN------N-N-N------NNNNNNNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----------AATAATACTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGACAATC---------AA--AC-CAT----GTATAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTA
gi|5 : cacgGAAACAGACAACACC-CACCATG-CC-------C-----AC------T-A-GAGCCGGTTTAATC----CGG-AGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCCA----------A--------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATC---------AA--ATA-AT----ATACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGT-AATCAGTACATTTCGATGAATTGGTA---AGAACTGTTATCAGC-TA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATA---GGAACTGCGAGTCGC-CG-TC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T---------TC-------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAAC-TTGTAAAGCACATATCTAATACCACATA---CGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATATATAATCACACAT----ATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 1111 1111111111 3333333333333333333 222222222 3333333333333 11 22222 1 3333333 333333333333 1 222 11 1 3333 1 333333 44444 1111 111 1111 333333333333333 333333333333333333333333333333333333333333 111 1111111111 222222222 1111 333333333 1 11
lowQualScore : 1 2 3 3 33 1 11 7777 5 3 5 3 3333 3333333333 5 8888888888888888888 3 888888888 7777777777777 11 00000 8 1 0 3 3333333 2 0 999999999999 1 3 111 1 66 3 6666 3 888888 0 44444 2222 2 0 3 000 444 6666 66 2 3 11 1 1 000000000000000 5 33 5 66 333333333333333333333333333333333333333333 5 2 8 4 222 4 1 2 7777777777 11 11 2 1 666666666 99 777 7777 0 222222222 6 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . . .... .......... . ................... . ......... ............. .. ..... . . . . ....... . . ............ . . ... . .. . .... . ...... . ..... .... . . . ... ... .... .. . . .. . . ............... . .. . .. .......................................... . . . . ... . . . .......... .. .. . . ......... .. ... .... . ......... . . .. . .
lowQualScore : 0 0 2 2 88 0 00 0000 0 8 6 8 4444 0000000000 2 7777777777777777777 7 000000000 0000000000000 00 00000 0 0 0 2 0000000 5 2 222222222222 0 3 555 0 55 3 0000 3 777777 7 00000 7777 5 2 5 222 555 5555 00 5 2 55 0 0 444444444444444 6 22 0 66 999999999999999999999999999999999999999999 7 6 9 4 555 0 1 5 5555555555 11 55 7 0 777777777 22 222 0000 8 000000000 0 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACACAT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACACAT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGC-TGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATG-TAAAACACATATTTAATATCATATA-GGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTA---TTCAA---TAAAAACAAACCTGATACTTATTTCAGTTAAA-C-GATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGT-ATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGATAATC----------A--ACATATTCAGGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : ATATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGACTGGaatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT-CTTCACTAGTAT-TGACATATGTAACACC-CCTTACATCC-------C-----ACACTCCTT-GCG------CCAGATTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCATGGC-----AT------T-G-G------CTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-CC-------C-----AT------TTC-G------CCTACTTGATGTGA-ATTTCA-TTT---TCG-GACATT-TTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-CC-------CGTGACAC------C-A-G------CTTGA--------GTACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACACTG
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATATTag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAA
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAAT-AGTGTATTTTGATGAAATAGTA---TGAACAATTATCCGCTTG-TCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTT-TAAAACACATATATAATACCACATACG-CAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAATT-TATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACT-CTGCTCT--------AAACAT----CACC-CCTCACA-CC-------T-----AC------T-A-G------C-------A-AC--------A-CTC---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAG--ATAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGCAATC---------AA--atactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTA---TAGACCCTTATCTGC-TA---------G-G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA--------------AA-ACATATCTTGTATCACAT--G-CATA----GCTGTTCTTTAAAACAT---ATAATAGA-CCCTCCTTGTAAAT-TGCT----TCACACA-CAAGCGACTGTAATAAAAAAAT-AAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAA-CTGATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTCACTC---------AA--A-ACAT----ATATATCATTgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTGTAAAT-TGCTGACCTCATAAA-CA------TGCGATAACAACTT-----TAAAAAAA-AAAAACAAA---------------AA-AAAA-C-CCTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT-----------T-GCATATNNNNNNNNNNNNNNN-NNNNNNN-NN-------N-----NN------N-N-N------NNNNNNNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----------AATAATACTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGACAATC---------AA--AC-CAT----GTATAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTA
gi|5 : cacgGAAACAGACAACACC-CACCATG-CC-------C-----AC------T-A-GAGCCGGTTTAATC----CGG-AGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCCA----------A--------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAACAATC---------AA--ATA-AT----ATACATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGT-AATCAGTACATTTCGATGAATTGGTA---AGAACTGTTATCAGC-TA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATA---GGAACTGCGAGTCGC-CG-TC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTA---T---------TC-------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAAC-TTGTAAAGCACATATCTAATACCACATA---CGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATATATAATCACACAT----ATATATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
blockSeqs : C G T A TT G CA . C T T T CAGT TGAACAA C TTGTCTATTGGA A TACCATA AAATAAGTATT TG CTGTT G A G T TACTTT C ACGCATCGT T A . A C . GACC . AGCGAC AAAA AAAT C A GTC TTT TTT CA C T TC A A AACTCTGCTCT A GT A AT CACACTCCTTGCGCCAGATTAA T A G A GTA G T T GAAATAAATT GG AA T A TATATATAT TC CAC . . T . . T
blockSeqs : C A T A . T . . A C G C AGT TAGACCC T TACCTTGTGGCA A AAA TCA . . . T . T AACTTG C GCATA A . . . . . . AAA C T AT GTG CTG CT A T TA C T TGC A AC . G TCCATGGCATTGGCTTAATTAA T A C . GT . C C . AG AT C T . . AC . . T . . .
blockSeqs : A A . . . T . . C T T T AAA AGAACTG A CGTCATGACA T T T . . . A . . . . ACGTA . . . AA CC . . . AC . GA . G CACTAGAGCCGGTTTAATC T T . . . . T C . GG AA T C . . CC . . A . . .
blockSeqs : T . . . . . . A GGAACTG C TAGGG T T T . . . . GT . T CATTTCGCCTACTTGAT T C . . . . A A . GT AA T C . . TA . . T . .
blockSeqs : T . TCTT . A NN . A CGTGACACCAGCTTGA N T . . . . T T . TG AA C T . .
blockSeqs : AC . N NNNNNNNNNNNNNNN . N . . . . A T . GA AA T
blockSeqs : . . G TACTAGCA . G . . . . T A . GA . .
blockSeqs : . . . . . . N N . NN . .
blockSeqs : . . T C . . .
blockSeqCons : **** AG** NGAACCG*** CATTGCGCCGGCTTAA************************** NC* **** ********* **
originalCons : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAAGTGCATTTCGATGAAATAGTA---TGAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CC-------C-----AC------T-A-G------CTTAATTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ACACAT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
finalCons : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAG--GCATTTCGATGAAATAGTANGAACCG---TTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAA-C-GATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGT-ACT-CTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-CCCATTGCGCCGGCTTAA--------------------------GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGACAATC---------AA--ANC-AT----ATATATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA
Alignments
lowQualScore : 11 11 1111 444 1111111111 3333333333333333333 222222222 3333333333333 11 22222 1 3333333 333333333333 1 222 11 1 3333 1 333333 44444 1111 111 222 222 111 333333333333333333333 111111111 1111111111 3333333333333 11 1111111 333333333 1 11
lowQualScore : 1 2 3 3 33 1 11 7777 5 3 5 111 4444444444 5 8888888888888888888 3 888888888 7777777777777 11 00000 8 1 0 3 3333333 2 0 999999999999 1 3 111 1 66 3 6666 3 888888 0 44444 2222 2 0 3 000 444 222 66 2 3 11 1 1 777 555 666 5 2 33 5 66 66 444444444444444444444 4 0 1 1 444444444 4 1 2 7777777777 11 0 1 0 1 6666666666666 22 4444444 0 222222222 6 0 11 8 0
lowQualScore : . . . . .. . .. .... . . . ... .......... . ................... . ......... ............. .. ..... . . . . ....... . . ............ . . ... . .. . .... . ...... . ..... .... . . . ... ... ... .. . . .. . . ... ... ... . . .. . .. .. ..................... . . . . ......... . . . .......... .. . . . . ............. .. ....... . ......... . . .. . .
lowQualScore : 0 0 2 2 88 0 00 0000 0 8 6 444 7777777777 2 7777777777777777777 7 000000000 0000000000000 00 00000 0 0 0 2 0000000 5 2 222222222222 0 3 555 0 55 3 0000 3 777777 7 00000 7777 5 2 5 222 555 555 00 5 2 55 0 0 666 222 888 6 5 22 0 66 99 222222222222222222222 4 3 9 0 222222222 0 1 5 5555555555 11 9 7 5 0 7777777777777 44 3333333 8 000000000 0 0 00 0 2
consensus : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAGN-GCATTTCGATGAAATAGTAN---GAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAAC-G-ATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGTA-CTCTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-C--CCA------CT-GCGCCGGC----TTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAATAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGAC-------------AATCAAA-CATAT--A----TATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
Reference ( family-282 ) : CTGGAANACCGGATTTATTTATCAACGT--GTGACAGTTTA--AATACTG----TTACCCGTTTTGAGCGGTTAACAG--GCATTTCGATGAAATAGTAN---GAACCGTTATCCGC-TG-TC--TT--G-G-G--ATTTAACAT--T------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATT-TTATTTGATAACTTGCTNGAAAACTTT-AAATATCGGTAC-TT-TAAAACACATATCTAATACCACATA-G-CATACGT-GCTGTTCTNTAAA-CATTTTATNATAGAANCCTCCTTGTAAAT-TGCTGAC-TCACAAA-CAA-CGACTGCGATAAAAAAAT-A---TAAAAAAATAAAAACAAACCTGATACTTATNTCAGTNAAAC-G-ATGACAAACATTACTAGGATTTGTTCTAGTGCTTGAAAATATTATTTAGATTTTGAANGTTGTNGTA-CTCTNCNCT-GCATATGAAACATGCAACACC-CCTCACG-C--CCA------TT-GCGCCGGC----TTAA-GCGGTANTT-A-TTC---TCG-AGCAACACTGAATGAGTTCCATGATTCCA----------AGGAATCAGAAACAATAATAACACTGGNAAGACAAAATTCCAACGGTCTTAAATCTGACAACGGAC-------------AATCAAANCATAT--A----TATCACTTGTTTTCGACGCAAAGGTTGTGTTACACTTGTCCATTCTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGGACATATAACTTTGTACCAACTAGACAAGATAACTT--ATTACA-TAGACAA
gi|1 : CTGGAAAACCAGATTTATTTATCAACGT--GTGACAGAATA--CATACTGCACGTTGCCCATTTTGAGCGGTTAACAAATGCATTTTAATGAAATAGTAGTATGATCTATTATCCGC-TGGTC--TTTGA-G-G--ATTTAATAC--T------AGTATTTTGCGTGAGATATAA----------T--AAC--AG-----CTT-TTATCTGATAACTTGCTCGAAAACTTT-AAATATCGGTAAATG-TAAAACACATATTTAATATCATATA-GGCATACATCGCTGGTCTGTGAA-CATTTTATTATAGAAACCTCCTGGAAAAAATGCTGATGTCACAAAATAATCAATTGCAATTTAAAAATTA---TTCAA---TAAAAACAAACCTGATACTTATTTCAGTTAAAC-G-ATGACAAACATCGCTAGGATTTGTCTTAGTGCCTGAAAATATTATTTGGATTTTGAAGGTTGTGGTATTTCTACCCT-ACATATGAAACATGCAACACC-CCTCACT-C--CCA------CT-A-GCTTAA----TTAA-GCGGTACTT-A-TTC---TCA-AGCAACACGGAATGTGTTCTATGATTCCA----------AGAAATCAGAAACAATAATAACACAAGAAAAACAGAATTCCAACGGTCTTAAATCTGACAACGGAT-------------AATCAA--CATATTCAGGTTTATCACTTGTTTTCGACGAAAAGGCTGTGTTACACTTGTCCATTCTGTCCCCACCCCCACCCCCAGAA-AGTTAACATGTAATTTGAGGACATAAAACTTTGTATCAACTTAACAAGATAACATCGATTACA-TAGAAAA
gi|10 : --A----TATCACTTGTTTTCATCGCAAAGGTTGCGTTACACCTGCCCATTCTCC---------TAAATTCAGACTGGaatgtaa
gi|10 : GAGGACATATAATTTTGTACCATCAAGGCAAGATAACTT--ATAACA-TAGAaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggacatataattttgtaccatcaaggcaagataacttataacataga
gi|11 : atatcacttgttttcatcgcaaaggttgcgttacacctgcccattctcctaaattcagactggaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CTCTTCACTAGTAT-TGACATATGTAACACC-CCTTACATC--CCACACTCCTT-GCGCCAGA----TTAA-GCGGTAATT-A-TTTGT-TTG-AGCAACACTGAGAGAGCTCTATGAATTAA----------AGGAACCAGAA
gi|12 : tatagagtATGAAATATACAACACC-TCTAATG-CTTCCA------TG-GCATTGGCTTAATTAA-GTGGTAACCGA-TCT---TCC-AGCAAAACCGAATGAAATCCGTGAAGCCAGAAATAAATTAAGGATCAGATATAATAAAAACA
gi|13 : ATGAAACACCACCTCACG-C--CCA------TT-TCGCCTAC----TTGATGTGA-ATTTCA-TTT---TCG-GAC-ATTTTGAATGAATACCGTGGTCCCA----------AGGGATCAGAAACAATAGCAACA
gi|14 : ACATGTAATATC-CCTCACT-C--CCG------TG-ACACCAGC----TTGA-G---TACTT-T-TTCGTATCG-AGCAACATACAAAGGACTGAATGATTCGA----------AGTAATACGAAATAATGATA
gi|15 : TC---TCA-AGCAACATTAAATGAGTTTTATG-TTCCA----------ATGAATCAGAAATGATAACCACACTG
gi|17 : cagtgttcattctcaA-GCGGTGTTT-AATTT---TCGGAGAAACACAGAATGAGCTCTAATATTCCA----------AGAAAGCAGAAACAATAACAATATTag
gi|19 : CATGTTATTTGGGGACATATAATTTTGTATCGACTAGATCAGATAACTT--ATTACA-TAGATAA
gi|2 : gTGGGACACTGGATCTATTTATCA-CGT--GTGACAGTGTA--AATACTG----TTACCCATTTTGAGCGGTTAATAGT-GTATTTTGATGAAATAGTAT---GAACAATTATCCGCTTG-TCTATT--G-G-A--ATTAAACATAAA------AATGTTTTGCGTGAGATATAAAAATAAGTATT--GAT--AA-----GTT-TTATTTAACAACTTGCTAGGAAACTTT-ATATATCGGTACTTT-TAAAACACATATATAATACCACATACG-CAT-CGT-AC
gi|2 : tcgtctgAAAAACAAACCTGATATTAATAT-ATTTAAAT-TTATGACAAACATTACTAGGATTTTTTCTAGTGCTTGAAAATGTTAATTAGATTTTGAAATTTGAAGTAACTCTGCTCT--------AAACAT----CACC-CCTCACA-C--CTA------CT----------------A-GCAACACT------C---TCA-AGCAACACTGAATGAGTTCAATGAATCTA----------AGAAATCAGA--TAATAATAACATTGGAAATACAAAATTCCAACGGTCATAAATCTGACAACGGGC-------------AATCAAatactagtagcgggtctatgaaaaacaaacctgatattaatatatttaaatttatgacaaacattactaggattttttctagtgcttgaaaatgttaattagattttgaaatttgaagtaactctgctctaaacatcacccctcacacctactagcaacactctcaagcaacactgaatgagttcaatgaatctaagaaatcagataataataacattggaaatacaaaattccaacggtcataaatctgacaacgggcaatcaa
gi|3 : tcgtctgtgggacactggatctatttatcacgtgtgacagtgtaaatactgttacccattttgagcggttaatagtgtattttgatgaaatagtatgaacaattatccgcttgtctattggaattaaacataaaaatgttttgcgtgagatataaaaataagtattgataagttttatttaacaacttgctaggaaactttatatatcggtacttttaaaacacatatataataccacatacgcatcgtacatactagtagcgggtctatgGAAATAGTAT---AGACCCTTATCTGC-TA---------G-G-G--ATTACACAT--T------AGCATTTTGTGTAAGATATAA----------T--AAT--AACTGTTACTGTTATTTGATAACTTGCTTGAAAACATT-AAATA--------------AA-ACATATCTTGTATCACAT--G-CATA----GCTGTTCTTTAAAACAT---ATAATAGA-CCCTCCTTGTAAAT-TGCT----TCACACA-CAAGCGACTGTAATAAAAAAAT-AAAATAAAAAAATAAAAACAAACCTGATACTTATGTCAGTGAAACTG-ATGACTAAAATTACTATGAAATGTTATAATGCT
gi|3 : aTAATAACTCATGTAAGACACAATTCCAATGGTCTTAAATTTGACAACGTTC-------------ACTCAAAACATAT--A----TATCATTgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataactcatgtaagacacaattccaatggtcttaaatttgacaacgttcactcaaaacatatatatcatt
gi|4 : agaaatagtatagacccttatctgctagggattacacattagcattttgtgtaagatataataataactgttactgttatttgataacttgcttgaaaacattaaataaaacatatcttgtatcacatgcatagctgttctttaaaacatataatagaccctccttgtaaattgcttcacacacaagcgactgtaataaaaaaataaaataaaaaaataaaaacaaacctgatacttatgtcagtgaaactgatgactaaaattactatgaaatgttataatgctgtcctccatatgaaataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTGTAAAT-TGCTGACCTCATAAA-CA------TGCGATAACAACTT-----TAAAAAAA-AAAAACAAA---------------AA-AAAAC-C-CTGA-------TAC--GGATTTGTACTAATACTTGAAGATATTATTCAGATTTTGAACGTTGTTGT----------T-GCATAT-NNNNNNNNNNNNNN-NNNNNNN-N--NNN------NN-NNNNNNNN----NNNN-NNNNNNNNN-N-NNN---NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNT----AATAATA------CTGGCAAGAAAATGTTTTAACGGTCTTAGATATGACAACGGAC-------------AATCAAACCATGT--A----TAGCAACTGTTTTCAACGC-AAGGTTGTGTTACACTTGTCCTTAGTGT---------TATTTCCAGCCTTGTT-TCATGTCATTTTAGGACATATAACTTTGTACAAATTA
gi|5 : cacgGAAACAGACAACACC-CACCATG-C--CCA------CTAGAGCCGGT----TTAA-TCCGGAGCT-A-TTG---TCA-AGCAACAATGTTTGAGTTCCATGATTCCA----------A--------------TAATAACACTTGCAAGACAAAATTCCAACTATCTTAAGTCTGAGAACGAAC-------------AATCAAATAATAT--A----CATCACTTGTGTTCGACACAAAGATCGTGTTACACTTGTACATTCTGT---------TATTTCCAGACAGGTT-ATTTGTCATTTGATGACTTAGATCTTTG-AATAACCAGACAACATAACTT--ATTACA-TTGACAAttacattgaaaa
gi|6 : cgCATTTTACAAAGACTG----TAACACGCTT-GAGCGGTAATCAGT-ACATTTCGATGAATTGGTAA---GAACTGTTATCAGC-TA-CC--TT--GTG-GCAATTTAACAT--T------CGTGTTAGTCGTCAGGTATttataact
gi|7 : agtacaacacctgcaaaaaatagcaacatcgtatcaatttctggagctatatgagtcctcgatgggcagcgttactgtttgttttgcacaatacgtcattgattatgttgggaaacgagatctatttactgtatacacatgcggttaacagtacgatgacgtGAACACCAGATT-----ATAAACATTTGTGAAAGTTTA--AATACTG----TTGCCCG-CGGGAGTGGACGACA----TATTTCGCTGAAATAATAG---GAACTGCGAGTCGC-CG-TC--AT--G-ACA--ATTTAACAT--TACCATAAATATCTTACTTGAGGTATAA----------TCAGATTGAA-----ATT-TT
gi|8 : atatatgctatcagacgaaatagtgactgctataatatatacattttaaaatcattttgaactatacgtaattttctgtgttcCTGGAAAACCAGATTTATTTATCAACGT--GGGACAGTTTA--AATACTG----CTAT--ATTTTGAGCAATTAACAAA-GCATATTGATGAAATAGTAT------------TC-------TC--TT---------AT---ACAT--A------AGTATTTTGCGTGAGATATAA----------T--AAT--AA-----ATA-TTATTTAATAATTTGCTAGAAAACTTCGGAATATCGGAAC-TTGTAAAGCACATATCTAATACCACATA---CGTA----GTTGTTCTATAAA-
gi|9 : tgtacatatcatgcgttatttCACTGCTACGACAAACTTTCAACGGTCTTGAACCTGACAACGGACGACCTATATATATAATCACA-CATAT--A----TATCACTTGTTTACGACGCAGAGATTGTATTACACTTGTACAGTTTGT---------TATTTCCAGACTGGTT-ACATGTCATTTGAGG-TATATAGTTTTGTACCAACTAGACAAGATAACTT--ATTACATTAAACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACATATCACATAATTCATTTATGACATAAATTGTCGAACGTGGTATATTGCACAATTCAATTCTTACATTATCA
Unaligned ( gi|18 ): TATTGGAAACTCCGATCTACCCATTGTATCGGATCGATTAACAGTACAGTGACGTCATTTTATA