lowQualScore : 1111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 222 555 1 7777777777777777777777777777777777777777777777 22 555555555555555555555555555555555555555555555 11 222 1 8888 1 11111 22 11 1 333333 111 222222 3333 111 111111111 66666666666 11 1 66666666666666666666666666666666666666666666666666666666666666666666666666 1 111 66666666666666666666666666666666666666666666666666666666666 1111 1 222 1111111 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 33333333333 11 2222 11 11 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 111 1 22222 1 1 11 11 3333 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 2 3333333333 2 2222 3333333333 222222222 111 99999999999999 1 222222222222222222222222222 111 1 111 66666666666666666666666 333333333333 22222 22 1 22222222222 3333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 66666666666666666 11111 22222 1 11111 1111 111 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222 1111 222 111 222 3333
lowQualScore : 11 7 6 111 333 7 4 2 0000000000000000000000000000000000000000000000 77 66 6 4 1 7 1 222222222222222222222222222222222222222222222 9 88 7 3 777 5 5555 6 8 88888 6 8 33 6 7 44 6 6 6 0 9 666666 6 555 3 8 0 77 7 111111 8888 3 555 888888888 3 77777777777 44 6 6 3 66 6 2 4 6 6 44444444444444444444444444444444444444444444444444444444444444444444444444 8 8 1 6 444 1 77777777777777777777777777777777777777777777777777777777777 1 0000 3 1 5 000 8 1111111 444 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 1 88888888888 1 5 77 22 2 2222 00 2 9 33 000 1 0 5 88 999 4 0 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 9 5 3 11 8 1 000 8 3 6 0 8888 4 7 77777 5 4 2 6 7 6 55 33 6 6 5555 9 6 3 6 4 1 777 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 11 8 2 2222222222 3 8 3 1 3 55 1111 2 9999999999 777777777 4 777 22222222222222 3 3 6 7 88 6 000000000000000000000000000 6 3 0 888 000 8 5 7 3 0 3 000 77777777777777777777777 5 222222222222 33 2 1 44444 77 11 1 33333333333 6666 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 4 99999999999999999 0 88888 66666 5 4 8 88888 3333 4 555 5 00 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 99 8 99 333333 1111 666 33 666 88 666 1 0000
lowQualScore : .. . . ... ... . . . .............................................. .. .. . . . . . ............................................. . .. . . ... . .... . . ..... . . .. . . .. . . . . . ...... . ... . . . .. . ...... .... . ... ......... . ........... .. . . . .. . . . . . .......................................................................... . . . . ... . ........................................................... . .... . . . ... . ....... ... . ............................................................................................................................ . . ........... . . .. .. . .... .. . . .. ... . . . .. ... . . . .................................................................................... . . . . . .. . . ... . . . . .... . . ..... . . . . . . .. .. . . .... . . . . . . ... . ................................................................................................. . .. . . .......... . . . . . .. .... . .......... ......... . ... .............. . . . . .. . ........................... . . . ... ... . . . . . . ... ....................... . ............ .. . . ..... .. .. . ........... .... ................................................................................................................................ .. . ................. . ..... ..... . . . ..... .... . ... . .. ........................................................................................................... . .. . .. ...... .... ... .. ... .. ... . ....
lowQualScore : 00 0 0 000 555 0 0 5 5555555555555555555555555555555555555555555555 55 55 0 0 0 3 0 000000000000000000000000000000000000000000000 7 33 0 7 777 0 0000 3 3 77777 7 3 77 0 7 33 0 0 0 0 2 555555 0 222 2 8 2 55 0 222222 8888 2 555 333333333 7 55555555555 55 0 0 0 55 0 5 0 0 7 55555555555555555555555555555555555555555555555555555555555555555555555555 0 0 8 0 666 0 99999999999999999999999999999999999999999999999999999999999 0 6666 2 0 6 444 0 6666666 000 4 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 9 4 66666666666 9 7 99 77 5 3333 00 2 1 66 000 7 7 7 44 999 3 7 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 8 3 7 5 00 0 4 666 0 2 0 8 4444 0 0 00000 0 0 5 0 0 5 88 88 0 7 0000 0 0 7 7 7 0 333 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 00 5 0 0000000000 2 8 3 2 2 55 2222 5 5555555555 000000000 0 555 88888888888888 2 2 0 0 22 0 000000000000000000000000000 0 2 8 555 888 8 0 0 5 8 2 666 66666666666666666666666 0 666666666666 00 1 4 00000 99 44 7 77777777777 4444 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 5 11111111111111111 1 33333 66666 0 4 9 22222 4444 4 888 4 99 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 00 0 66 000000 4444 000 66 000 88 000 8 7777
consensus : CCTTATCTGGCTTTCTGAATGCTGTCTGAACATNTTTTNACTAGTTNATGAGGACNGTGGCATTNNCCNATTTCTTGGCCNCGTTTCTTGGTCACGTTTTAGAAGTNNTTACCNCGATTGCATGTGTTATCTCTGATCCTGAGATNAT----G---GCA------------A-TAAG------------GCCTCCATT--GGTTTTNTTGGTCAATAAGTATCGATGAAAAANCGTTAATTTATGTTATTTAGGCACTACAAATTTTCCTTTTTAAACTGTAAAGTCAANCCATCGGGCGTAA-CTTGGATGACCCAGG-GAAAATAATGATGACATTTGTATAGTCTGAAC-TTTTCCTCGCAAAGGGANCTCGAAANT-A-TCAATTC-AAATTTTAGGAATANTTGACCAGTACTGGAACTGCGGATTTTTGTNTATCAACAAAAAAAAGACTCNNACATTGCCCTCNATGAAATCGNNGCAGGCAGTGCACATGNTGGTNCGGAGGGCACTGGCAGTCACTTAATGTC----------CGG-----------------AAC------TT------------ATTTAAC------A---AT-TACAT-CGA-ATAGCCGTAGCGATTATGCAGACATTTCCTACGCGCCTGNCATG-AA---AAC-GCAC---------A-CTC---TGA--CAACA-----TA-----TGCAGGTCTCTNGACCATCGTCAACA-TT-CTGGCACCAATCGATGATA---TCTGGAACACATAAGAATCTTTCCGNA---A---CACCATA------TTCATGCATAAGT----------NAGCCAAGGT-CACTCCGAATA--GCCGCTACGTTTATGCA-AATGTTTCCAGTCNG---ACGGTTTGAAAACAGCGCACTTGC-ANTT---GACATACGC-TAC--TCTGACAC-AACCTATGCGGGTNTCTAGATCATGTCCA--C---ACTTTGACACGAAC-C-GAT-GATTTCTGGAACACATA-----TGCG---TAACTCCAGAACCACGCATTNTTGCA--CG-----CAA--NA-----------ACNCATGCAATA---AACATACAAGAAAACGTAGCGAATATGCAAA--A-ATTTCT-AT-CCGTTTGCGATGAAAACNGCATACTTGCAATTGACACG--TATCACTCTCGTCTGTCNTANATGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCCGCCGATGATACATTTGCCTGAANAATGCANTGGCAAACCGNTGCCCCCTAACCAGTCCCCAGTGGTATT--CGGGACAACCATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGT--AAAGTTGTTTACCTGGTTATTACCGGGGT----CTGTCCGGTATTGTTATTATTTATCG-TAAATTTNCAT---AATANGT-C-T-----ATATATTCTATTTTGGCAATTTATTTTGAANT-AT-----CT-CTT--ACTNGAATTTCATGCTTGTTTAATCGGGGTGTACTTTTGATAAACCAATAANGAAAGATAGAAATGAACAC----GC--TTACCATTANATAACAANAGCTAAT---TACTNTTTTCTTCTTGCATCACTTTTTAAGCAT-TTT--TCATCATTGGGCAGACACAGTTTTCATAGT--C--AA--CGAATAGATGGAGAAA---C--CT--AT--C--AA----GGGGAATAACTTTG--NTAAAT-NATNAATAAG----GTCTG-CATG----------------TGTACA-T-ATA-TAT---T--ATT-------------TT-TTATCATGTCAAGCAATTCTNTACACAACA-AGCA---T---CGTATTTGTCATAATTGG----TTTA-TT-ATTCC-AATA-AA---A-CAATAATTTTAAA-TA-TATTACTTN-AAAAATGG---------TGACGGC-C-ATTTTGAATTGCGGCCATTTTGAAAGTG--GGTCCATAGC-CAT--TT--------------C-----TGTCA----T-----TGTGCCAAGT-TTGNTGC------TTTTGTNAAAC--AATGCACAATTA-TCTCACAAATCCGCC---CCCACTA
Reference ( gi|1 ) : CCTTCCCTGGCATTTTGAATGTTGTCTGAAC-CGTTATAACTAGTTCAT------TGTGGC--TGT--TATCT---GATCCTTT-----------GTT--AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA------------GCA------------A-TAAG------------GCCTTCATT--GTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAA-TTTAGATGATCCGGG-GAAAATAATGATACTATTTGTATAGTTTGAAC-TATTCCTCGCAAAGGGAATTCAAAAAT-A-TCAATTC-CAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTC----------TAT-----------------AAC------TT------------ATTTAAC------A---A---ACAT-CAA-ATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATG-GA---AAC-GCAC---------A-CTC---TG-----ACA-----TA-----TGCAGGTCTCTTGACCATCGTCAACA-AT-CTGGCACCAATCGACGACA---TATGGAACACATAAGCATCTTTCCGCC---A---CACCATA------GTCATGC-CAAGT----------CAGCAAAGATTCATTCAAAATA--GCTGCTAAAATTATGTA-AATGTTTCCAGTCAG--TACAGTTTGAAAACAACGCACTTGC-ATTG---GACATACAT-TAC--TCTGACAT-AACTTATACGGGTCCCTAGACCATGTTCA--C---ACTTTGACACGAAC-C-GAT-GGTTTCTGGAGCACTTA-----TGCG---TAACACCAGAACCACACATTATTGCA--CG-----CAA--GA-----------ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGCAGA--A-ATTTTC-AT-CCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATCACTCTCGTATGTTATACACGTGTCACTTTCAGAA--AAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGTCTCTTATGGCATTAATGAAAC--TTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGC--AATGTTGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATTA-TACATTTACAT---AATATATATAT-----ATATATTCCATTATAATAATTTATTTTGAAGT-AT-----CT-CTTAGACTGGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATAC----TC--TTGCCGTTATAAAACAAGAGCTTAT---TGCTATTTTCTTCTTGCATCACTTTCTAACTAT-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGT--C--AA--CGAATAAA----GAAA---C--CT--AT--T--AA----GGAAAATAACTTTG--TTAAAT-TATTAATAAA----GTCTT-CATG----------------GGTGCA-T-ATA-TAT---T--ATT-------------TTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTA---T---TATATTTGTCATAATTGA----TTTA-CT-ATTGC-AATA-AA---A-CAATAACTTTAAA-TA-GATTACTTA-AAAAATGGCAACCATCCTGACGGT-C-ATCGTGAATTGCGACCAGTTTGAAAGTG--GGTCCATAGC-CAT--TT--------------CA----TGTC-----T-----TGTGCCAGAT-TTGGTGC------TTTTATCAAAC--AGTGCACCGTTA-TCTCACGCATCTGCCTGTCCCACTA
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAAC--ATTTTAACTAGTTGAT------GGTGAC--TTG--GATTT---GGCTCTTTTTCTTGGTCACGTTTTAAAAATACTTACCTCGATTAC--ATGTTATCTCTGATCATTAGATCAT--------CCA------------A-CAAGTATTTCATTAACGCCTCCTTT--GGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTA-CTTGGATGACCCAGG-GAAAAGAATGATGACAGTTGTATAGTCTGAAC-TTTTCCTCGCAAAGGCAAGTCAAAACT-A-TCAATTCACA-TTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCA
gi|3 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAGGACTGTGGCATTGTCCTATTTCTTGGTCACGT-----------GTT--AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACTATCCAAG---GCAGAGGTTTTATCTA-TAAG------------GTCCAAAAT--GGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAA-CTTGGATGACCCAGG-GAAAATAATGAGAACATTTGTATAATCTGATC-TTTTCCTTGCAAATGAAACTC-AAAAT-AGTCAATTC-ACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTC----------CAG-----------------AACACGGTATTCATGCATTTGCGATTCAACTCATTTA---ATATACAT-CGA-ATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATG-AA---AGA-GCAT---------A-CTC---TGATTCAACA-----TA-----TG-------------CATCGTCAACA-TT-CTGGCACCACTCGATGACA---TATGGAACACATAAGAATATCTCTTTA---A---TACCATA------TTCATGCATAAGT----------CAGCCAAGGT--ACT--GAACA--GCCGCCACGTTTGTGCA-CTTGTTTTCTATCTG--CCTGGTAAGAAAACAGCGTAGTT---ATT----GACTTGCGC-TAC--TCTGACAC-AA------------CCTAGACCATATCCA--C---ACTTTGACACGAAC-C-AAT-CAGTTATGGAACACAAA-----AGCG---GAGCTCCAGAAACACATATTCTTGCA--TG-----CGC--GA-----------GCCAACGCATTA---AACACACTAACAAACATAGCGAATA
gi|2 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagctccttaactagttgATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATTGTA------------AATAAT------------GCCTCCATTTGGTTTATTT--GTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACTA--AAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGGAGAAGA-----ATA----------AGTCTGAACGTAT-CCTCGCAAAGGGACTTCGAA--TGA-TCAATTA--AATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGTATTCGTGCATTTGCGATTCAAC------TT------------ATTTAAC------GTACATGTACAT-CGA-ATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATG-AA---AGA-ATAC---------A-TTC---TG-----ATACCACCTA-----TGCAGGTCGCTTGACCATCCACAGCA-TT-CTGACACCAATCAATGACA---CATGGAACACATAA-CA--ATTTCGCCATAA---CACCATA------TTCATACTTTATT----------TAGCCAAGGT--ACT--GAATT--GCCGCT-AAGTTATGTA-AATAT---CAGTC------CGATTTTAAAATAGAGCACTAAC-AATT---GACTTACTC-TAC--TCTGACAC-AACCTAGGAGGGTGTTAAGATCATGTCAA--C---ACTTTTACATGAAC-C-AAT-GAGTTCTTGAACACATA-----Ta
gi|17 : TTGGATGACCTAGG-AAAATTAATGATGACATAAGTATAGTCTGAAC-CTTTTCTCCCAAA-GGACCTCAAAATA-A-CCAATTC-AAATTTTAGG-ATAAATGACCAGTAaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|8 : aAGGACACTGGCAATCTTTTAATGCC----------CGG-----------------AAC------a
gi|4 : -----------------AAC------TT------------ATTTAAC------A---T---ACAT-TGA-ATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCT----TGTAA---AACAGCAC---------AGCTTATACA-----ACA-----TA-----TGCAGGTCT-TCGACCATTGTC-ACT-ATGGTGGCACCAATC----ATA---TCTGGAACGCATACGAATCTTTCCAGA---A---AACCATT------TTCGTGCAAAAGT----------AGGCAAAGAT--A--CCGAATA--GCCGCTACGTTTATGCA-AATGTTTC---TGAA--AATAG-----AAACAGCACACTTGCAATTGTCTTACACATGTCTACTTTTTGACACGAACCTAT---GATTTCTGGAACACATACG--CGTAACTCTA----GAAC-CAAATAAGTTT-----GCATT---------CG---TAAT-CCA-----ACGC-CTA---------------AA--AA-----------A---ATACAAGA---AA-----------ACATAGCGAACAGGCAAA--A-TTTTTT-AT-TGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGATGTGACAATTTC-GAA--AAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTTA-CCAGTTCCCAGTGGTATT--TGGGACAACCATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGT--AAAG-TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTTGTAA-T---TTTTCAT---AATACGT----------TATATTCTATTTTGGTAATTTA-TTTGGAGC-------------------------TCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGATA---ACGAA---------------------AAAGCAAGCAC--AG---T----TTTTCTTCTAG--------TCTA-------------ATCATATGGCAGACACAGTTTTCATAGTGAA--AA--CGAATGGA----GAAA---CCTCT--AT--C--A-------AAAATAA---------GAAT-AATGAATAAG----TTATG-CACG----------------TGTAAA-A-ATA-TAT---T--AAT-------------T--TTATCATGTCTAGCAATTCTTTAAATAAC---ATA---TCA-TGTATTTGTCATAATTGT----TTTA-TT--TTCC-ATTA-AA---ATCAATAATGTTTAA-CA-TTTTATTTG-AAACATCGCGGCCATTTTGAatcgtgttgattcatgtgtcagtctgctcatttaacatacatcaaatagccgttcagattattcagacaatttcaatgaatctggcaagaacataacacacgtgttaatgacttgacacaacataggcaggactctaaaccatggcaacctttctagcatcagacaatactttcttgaacacatgaaattctcaccaaatcactatattgaatatcattcacaagtgagccaaggcaccgaatcgcctttacgactcagcagatagttccactacaacacacttgaaaattagtccgatacaacttaggtgggtatgtagatcatggccaaccgttgtgttaccaatgcgtgatatctggagtatataggtacaaatagttatgcatcatcgtgcgtcattcaatataaatatatatatatatgtaacatataacatacgacaaaacgtaacgaatattcaaaacaattcctatctgtttgggataaaaaataaacacttaaa
gi|8 : gagtcC------TC------------ATTTAAC------A---T---ACAT-CAA-ATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAG-AACATAAC-ACACGTGTTAATGA-CT----TGACACAACA-----TA-----GGCAGGACTCTAAACCAT-GGCAACCTTT-CTAGCATCA---GACAATACTTTCTTGAACACATGAAATTCT---CACC---AAATCACTATATTGAATATCATTCACAAGT----------GAGCCAAGG--CA--CCGAATC--GC--CT----TTACG---ACT-----CAG-CAG---ATAGTTCCACTACAACACACTTG--A-----------AAAT-TAG--TCCGATAC-AACTTAGGTGGGTATGTAGATCATGGCCAACC---GTTGTGTTACCAATGC-G-T-GATATCTGGAGTA--TA-----TAGG---T-ACA-AATAGTTATGCATCATCGTG--CGTCATTCAA--TATAAATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTCAAAACA-ATTCCT-AT-CTGTTTGGGATAAAAA
gi|12 : aggacactggcaatcttttaatgcccggaacatcgtgttgattcatgtgtcagtctg------A---A---ACATACAAGATAAC-GCAGCGAATATGCAGAATATTCCTATCCGTTTGCGGTG-AA---AACTGCAT---------A-CTataaacacttaaa
gi|12 : atttttatgtagcacacttaccactgacatacactaccctgacacaacttctgcgggtctctagatcatgtccacactttgacaccaaaagataatttctggaacatataaactccggaacagcatatgcttacgtacttcttacgcattACACTTACCACT-GA---CAT-ACACT--------A-CCC---TG-----ACA-----CAACTTCTGCGGGTCTCTAGATCAT-GTCCACA-CT-TTGACACCAAAAGATAATT---TCTGGAACATATAAAC-----TCCGGA---A---CAGCAT----------ATGCTTACGTACTTCTTACGCATTAAA----CATACAAGATAACGCAGCGAA---TATGCAGAATATTCCTA-TCCGTTTGCGG--TGAAAACTGCATACTTAC-AATT---GACtacaattgactatcgctcgcgtctgttatacatgtgacgttttaagaaatatatctgttta
gi|5 : atttttatgtagcTTGAAAACAGCACACTTGC-AATT---GACATGTAT-CAC--TCTtatcgctcgcgtctgttatacatgtgacgttttaagaaatatatctgttta
gi|12 : tccacactttgacacgaacctataatttctcgaacacttacgcgtaactctagaaccaaatatttttgcattcgtaatccaacgcctgaaacatacaagaaaacatagcaaacatgcaaaaaattcctatcggAGCACACTTACCACTG----ACATACAC-TAC--CCTGACAC-AACTTCTGCGGGTCTCTAGATCATGTCCA--C---ACTTTGACACCAAA-A-GAT-AATTTCTGGAACA--TA-----TA------AACTCCGGAACAGCATATGCTT--A--CG-----TAC--TT------------CTTACGCATTA---AACATACAAGATAACGCAGCGAATATGCAGA--ATATTCCT-AT-CCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATCGCTCGCGTCTGTTATACATGTGACGTTTTAAGAA--Atgtctgtcttagatgtgacaatttcggaaagaaatctgctcaacccgctgatgatacatttgcctgattaatgcactgacaaaccgctgcccttaaccagtccccagtggtatttgggacaaccattgctatatagagtcctcactaccttacaatatgatgtttgactaattcaattggttttcttaagtaattgcgtaaagtttttacctggatattactagggtctgtccggtgttattatttatcgtaaattttcataataagttatattctattttgataatttatttggagctaatgcttttttcaattaactaataaccaaagataacaaaataataatcactttctttctcttcctgtctcatcttttcactttttcatcattagacagacacagttttcatagtcaaaataaatggagaaatctttatcaaaaaaaaataagttattcatggtataacatatattaattttatcacgtcaaccaattcttaacacaacatagcatctttttgtcataattgtcttattttccaataaagtcaataatattaaacatgttattttaaacattgtggccaatttgaatttgctggcaatagtcttgtctatcattttgccaagtctgttgcttttgtttaaaatgcacgtctctcaaatctgccccacaatt
gi|2 : atttttatgtATACAT-T-----CTGATAC-CACCTATGCAGGTCGCTTGACCATCCACAG-C---ATTCTGACACCAAT-C-AAT-GACACATGGAACACATAACAATTTCGCCATAACACCATATTCATACTTTATTtatatctgttta
gi|5 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaTCCA--C---ACTTTGACACGAAC-C-TAT-AATTTCTCGAACACTTA-----CGCG---TAACTCTAGAACCAAATATTTTTGCATTCG-----TAATCCA-----------ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAAA--A-AATTCCTAT-CGGTT------GAAAACAGCACACTTGCAATTGACATG--TATCACTCTTGTCTGTCTTAGATGTGACAATTTC-GGA--AAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCCCT-TAACCAGTCCCCAGTGGTATT--TGGGACAACCATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGT--AAAGTT-TTTACCTGGATATTACTAGGGT----CTGTCCGGT---GTTATTATTTATCG-TAAATTTTCAT---AATAAGT----------TATATTCTATTTTGATAATTTATTTGGAtagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgaacacatataaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|2 : --GA-----------ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGTAGA--A-AATTCC-TTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATCACTCTCGTCTCTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCT----AAACATTTGGCTAAACAAGACATGGGTTAATCAGTGCC--CAAAACA-------ATGGCATT--CGAGAC--A-A---CCAT-TGGAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TTTTTT-TTCTAAGCAACTGTGT--AAAATAGT--AACT-GTT--TACCTGGAT----AT-TCCAGTATTATTATTATT-ATTGGTCAATTTACAT---AAAA---ACCT-----ATATA--CTATTTTGGCAGTTTATGTTGAATT-ATAATTATTGCTTACACTAGGATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACAC----AC--ATTCAATTACATAACAATAGCTGAT---AACTATTTTCTTCTTACATCACTTTTAAAGCAT-TTT--TCATCATTGTTCATACACGGTTTTCAAAGT--CAAAA--CGAATAGA----GAAAATGT--CT--AT--C--AA----TGGAAATTACTTTG--ATAAA-----TAAT-AA----GTCTTGCATG----------------TGTACA-T-ATC-TA------------------------TG-TATCATGTCAGGCAATACTATGCACAACATAGCA---T---CATATT--------TTG-----TTTA-GTCATTCC-AATATAA---A-CAAT-ACATCAAA-TA-TA-TACTTT-AAAA-------------TGGTGGC-T-ATTTTGAATTGCGACCATTTTGAAAGTG--GGCCCATAGC-AAT--T-----------------------TT-----T-----TGGG--AAATATTATTGCCTGTCATTTTGCCTAGCTTGGTGCACAATTA-TCTCACAAATCCGC----TCCACTAgctaatgcttttttcaattaactaataaccaaagataacaaaataataatcactttctttctcttcctgtctcatcttttcactttttcatcattagacagacacagttttcatagtcaaaataaatggagaaatctttatcaaaaaaaaataagttattcatggtataacatatattaattttatcacgtcaaccaattcttaacacaacatagcatctttttgtcataattgtcttattttccaataaagtcaataatattaaacatgttattttaaacattgtggccaatttgaatttgctggcaatagtcttgtctatcattttgccaagtctgttgcttttgtttaaaatgcacgtctctcaaatctgccccacaatt
gi|19 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttctt----------------T--------GAT----------------GTCTGGCCAATTATATTGTTT-TCCTAAGTAACTGCATAAAATGT--TTTACC
gi|7 : cagtcagtacataacaataGCTATAACTGGAGTACGTCTGTC---CATTGTTATTATTATTTA-TAAATTTACATTAAAAT-TAT-TATTTTGAAT-TATTTTATTTTGGCAATTTAATTTGAAATTAT-----CC-CTTC-ACTTGAAGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACAC----GC--TCACCATTAAATAGTAAGAGCTAAT---TAATTTTTTCTTTTTGCATAGCTTTTTAATCTT-TTT--TTATCAT-AGATAACCACAGCTTTCATAGT--C--AAATTGAATGAA----GAAA---C--CC--CT--TTCAA----GGGGAATAACTTTG--TCAAAT-AGAAAAGACG----GTCCG-CAAG----------------TGTACA-T-ATA-TATG--TTAATT-------------TTATTATCATGTCAAGCAATTATGTACACAATGTAGCA---T---CATATTTGCCATAATTAA----GTCATTT-ATTCCAAATA-AA---AGCAATATTTTTGAA-TA-TATTA-TTATAAAAAT-----------TG-CGGT-CAATTTTAAA-TGCGGCCCTTTTGAAAGTG--GGCCCATAGC-CATAATTGCTGGAAA------TAGTATTGTCTAACAT-----TGTGCCAAGT-TTGATAC------TTTTGTAAAAC--AA-ATAACAATATTCTCACAAATCCGC----CCTACTA
gi|9 : tgTTTTAAATT-AT------T-CTT----TGGA-TTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAA----AC--TTGCCACTAAATAACAATAGCTAGT---TACTGTTTTCTTCGGGCATCAGTTTTTAAGCAT-TTT--TCATCATTTGGCAGACACAGTTTCCATAGT--CAAAA--CGAATAGA----GAAA---C--CT--CTCCC--AA----GGGGAATAACTTTG--ATAAAT-AATAAATAAG----GTCGG-CATG----------------TGTACA-T-AAA-TAT---T--ATT-------------T--TTATCATATCAAGCCATTCTGCACACAAC---ATA---TCAGCACATTTGTCATAATTGG----TTTATTT-ATTCC-AGTA-AA---A-AAATGAATTGAAA-TATAATTAta
gi|11 : tAAATATAAAAATGAATACAATGTCATTTAC---TATTAAACAACAAATTGTATATACTTTTTTCTTCTTGTATCACCTTCTAAGCATATTT--TCATTATTGGGC--TGACAGTTTTTATATT--T--AA----AATAAATGGAGAAA---T--CTTAAC--A--AA----GGGGCATTACTTTT--TTAGAT-----AATAAATTTGATCTG-CATGTATGTATATATGTATGGATACA-TTATA-TAT---T--ATT-------------TT-TTATCATGCCAAGCAAGTCTTTACACAATAAAGCT---T---CTTATTTGTCATAATTGG----TTTA-TT-ATTCC-AGTAGAA---A-TAATA----CGAA-TC-GAT---TTA-AAAAATGa
gi|5 : aTTCTCTTCCTGTCTCATCTTTTCACT---TTT--TCATCATTAGACAGACACAGTTTTCATAGT--C--AA----AATAAATGGAGAAA---T--CTTTAT--C--AA------AAAAAAA--------TAAGT-TATT----------------CATG----------------G-TATAAC-ATA-TAT---T--AAT-------------TT--TATCACGTCAACCAATTCTTAACACAACATAGCA---T---CTT-TTTGTCATAATTGT----CTTA-TT--TTCC-AATA-AA---GTCAATAATATTAAA-CA-TGTTATTTT-AAA----------------------C-ATTGT-------GGCCAATTTGAATTTGCTGG-CAATAGT-CTT--GT--------------C-----TATCA----T-----TTTGCCAAGT-CTGTTGC------TTTTGTTTAA---AATGCA-CGTC--TCTCA--AATCTGCCctagtaatttt
gi|13 : tccacactttgacacgaacctataatttctcgaacacttacgcgtaactctagaaccaaatatttttgcattcgtaatccaacgcctgaaacatacaagaaaacatagcaaacatgcaaaaaattcctatcggttgaaaacagcacacttgcaattgacatgtatcactcttgtctgtcttagatgtgacaatttcggaaagaaatctgctcaacccgctgatgatacatttgcctgattaatgcactgacaaaccgctgcccttaaccagtccccagtggtatttgggacaaccattgctatatagagtcctcactaccttacaatatgatgtttgactaattcaattggttttcttaagtaattgcgtaaagtttttacctggatattactagggtctgtccggtgttattatttatcgtaaattttcataataagttatattctattttgataatttatttggagctaatgcttttttcaattaactaataaccaaagataacaaaataataatcactttctTTCT-CTTACCTCACGTTTTAAACAT-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGT--C--AA----AATAAATGGAGAAA---C--C----G--T--AAGCGTGGAACATAAATAAGGTTTACGTGTAT--ATA---------TT-TA--------------------TGCA-T-ATACTAT---T--ATTATTATAATACTACTTTTTATCATGCCAAGCAATCTTCTACA----------------------TTGTCATAATTGG----TTAATTT-ATTCC-AACA-GAAATA-CATTTTTTTTAAACTA-TTTTATTTA-Accacaatt
gi|10 : TAACT--G--ATAAAT-GATAAATAAG----GTCTG-CATG------------------TATA-T-GTA-TATAAAT--ATT-------------AT---ATCTTGTCAAACACTTCTGTACACA---AAATAGAAT---CGCATTTGTCATAACTGG----TTTA-TTTATTCC-AATA-AG---A-TCATACATTTAAA-TA-TGTTACTTT-AAAAATGA---------TGAC----C-ATTTTGAATTCTGGTCATTTTGAAAGTG--AATCCATAGC-CAT--TT--------------Cttgcgtccatttt
gi|14 : ataatttctttcttttttttcatatacatgtacacgtatctttgacacagcacagacattttgcacagcattacaatgacatacatacaatacataatgacattatATAACTAACATTTTTA-TTTATTCC-AATA-AA---AACAATAACTTAAAA-TA-TATTGCTTT-AAAAATGGCGGCCATTTCGAAAGTCC-ATAACCAATTG---TCA---TGGAAAT---AGTC--TGACTCAT--AT--------------C-----TATCA----T-----TATGCCAAGT-TT-ACGT------TTGTA-AAAAA--AATACACAATTA-TCTCACACATCTGCCtgctgagactattctttgttcatcta
gi|16 : TAATGGC-C-ATTTTGATTTG--GCTATTTTGAAAGTG--GGTACGTAGC-CAT--TTTTGCTGGGAATTATCT----TGTC-----TAATATTATCCCAAGT-TTGGTAC------TTTTGTCAAA---AATGCATAATTA-TCTCATA-AT----CTGTCCCAccattg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 11111111111111111111111111111111 11111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 111 22222222 44444444444444444444444444444444 55555555555555555555555555555555555555555 11 1111 7777777 3333333333333333333333333333333333333333333333333333333333333333333333 11 111 333333333 11111 111 222222 44444444 11 5555555555 11111111 222222 5555555555555555555555555555555555555555 11111 1 33333333333333333333333333333333333333333333 33333333 11 1111 2222 111111 333333 1111111111111111111111111 11111 3333333333333333 111111 11 22 111 1111111111 33333333333333333333333333 33333333333333333333 333 1 1 1111 55555555555555 1111 1111 8888888888888888888888888888888888888888888 111111 222 111
lowQualScore : 4 88 777 1 1 00000000 11111111111111111111111111111111 7 0 22 11 33 00000000000000000000000000000000000000000 2 2 33 1 22 2 0 5555 1 4 4 2 3 4 2 1 8 3 0 777 222 5 22 2 888 0 0 777 4 4 1 3333333 22 3 1 44444 0 0 1 11 2 2 2222222222222222222222222222222222222222222222222222222222222222222222 1 2 22 8 444 8 222222222 8 3 33333 111 0 1 55 3 3 1 8 6 5 1 55 333333 88 1 88888888 1 77 0 999 44 3 1111111111 3 22 33333333 555555 3 66 5 3 9 0 888 44 7777777777777777777777777777777777777777 888 1 5 5 77 5 3 6 1 66666 99 1 1 99 11 5 99 6 0 1 1 0 1 33 88888 22 4 8 0 1 00000000000000000000000000000000000000000000 1 3 00000000 2 3 22 4444 3 2 0 5555 1 111111 6 77 999999 0 1 1 1111111111111111111111111 00000 1 33 7777 22 1111111111111111 1 77 3 111111 0 0 7 5 5 66 22 3 33 66 222 5 66 8888888888 8888 2 9999999 8888 0 66 99999999999999999999999999 4 66666666666666666666 8 1 000 55 6 88 4 8 777 6 4444 4 4 0 55 00000000000000 4 5555 555 1 2222 0 5 77 8888888888888888888888888888888888888888888 6 3 999999 77 000 3 1 0 9 111
lowQualScore : . .. ... . . ........ ................................ . . .. .. .. ......................................... . . .. . .. . . .... . . . . . . . . . . . ... ... . .. . ... . . ... . . . ....... .. . . ..... . . . .. . . ...................................................................... . . .. . ... . ......... . . ..... ... . . .. . . . . . . . .. ...... .. . ........ . .. . ... .. . .......... . .. ........ ...... . .. . . . . ... .. ........................................ ... . . . .. . . . . ..... .. . . .. .. . .. . . . . . . .. ..... .. . . . . ............................................ . . ........ . . .. .... . . . .... . ...... . .. ...... . . . ......................... ..... . .. .... .. ................ . .. . ...... . . . . . .. .. . .. .. ... . .. .......... .... . ....... .... . .. .......................... . .................... . . ... .. . .. . . ... . .... . . . .. .............. . .... ... . .... . . .. ........................................... . . ...... .. ... . . . . ...
lowQualScore : 7 00 333 0 0 77777777 00000000000000000000000000000000 0 7 00 77 55 88888888888888888888888888888888888888888 5 5 88 0 88 0 2 2222 2 0 0 5 0 0 5 0 0 2 6 666 666 0 44 8 000 6 8 888 2 0 0 3333333 00 7 0 00000 7 7 0 77 5 0 0000000000000000000000000000000000000000000000000000000000000000000000 4 8 00 0 000 0 000000000 0 2 00000 888 6 0 66 8 2 0 0 4 0 0 66 000000 22 0 66666666 0 00 8 666 22 8 8888888888 7 77 00000000 777777 3 99 0 4 0 4 111 44 8888888888888888888888888888888888888888 888 4 7 7 99 7 0 3 0 00000 22 0 0 22 77 5 22 4 8 4 0 6 0 88 22222 22 6 0 8 4 77777777777777777777777777777777777777777777 0 2 22222222 2 5 77 2222 3 5 7 0000 0 888888 7 77 555555 7 3 0 6666666666666666666666666 44444 7 77 1111 00 9999999999999999 0 99 0 111111 2 8 6 0 0 99 66 4 88 99 666 0 99 0000000000 6666 1 4444444 2222 1 11 11111111111111111111111111 4 99999999999999999999 9 0 999 66 0 88 0 0 000 0 8888 0 0 5 88 88888888888888 4 9999 111 6 1111 7 7 99 3333333333333333333333333333333333333333333 7 3 222222 77 000 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACAT-TTTTAACTAGTTCATGG-GACTGTGGC-GTTGTCC-ATTTCTTGG-------------TCACGT-TTAGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA------------AG--------TAANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAACAAAA-------TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGTATTC-TGCATTTGCGATT--------------------TAACT-----AAT-TA-----------CATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTGGCATG-AA---AAC-GCAC---------A-CTCTG--A--CA--ACATATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTCCG-AC-GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGTNTCTAGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCANATATNNTTGCATTCG-----CAA--N--A-----------ACGCATGCAATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACNGCATACTTGCAATTGACATG--TATC--ACTCTCGTCTGTCTTAGA--TGTGACGNTTTCAGA--AAAGGAATCTGCTCTACCNGCCGATGATACATTTGCCTGAANAATGCANTGGCAAACCACTGCCTCTTAACCAGTCCCCAGTGGTATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTAGGGT----CTGTCCAGTGTTATTATTATTTATC-GTAAATTTNCAT---A--AT-AC-GT-T---ATATATTCTATTTTGGTAATTTATTTTGAGCT-AT---T----CTT--ACT-GGATTTCATGCTTGTTTAATCGGGGTGTACTTTTGATAAACCAATAANGAAAGATA--GAAATGAACACG------CTTGCCATTAAATAAC--AANAGCTAATTAC-T---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTC--AACGAATAAATGGAGAA-A--CC--T--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTCTGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAAC-ATAGCATCGTATTTGTCATAATTGGTTTA-TT-ATTCC-AATA-AA---A-CAATA-ATTTTAAA-TAT-ATTACTTTAAAAATGG---------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG----------T----C---------ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTATCTGGCTTTCTGAATGCTGTCTGAACATNTTTTNACTAGTTNATGAGGACNGTGGC-ATTNNCCNATTTCTTGGCCNCGTTTCTTGGTCACGTTTTAGAAGTNNTTACCNCGATTGCATGTGTTATCTCTGATCCTGAGATN-------AT----GGCA------------A---------TAAGGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATCGATGAAAAANCGTTAATTTATGTTATTTAGGCACTACAAATTTTCCTTTTTAAACTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGANCTCGAAANTATCAATTCAAATTTTAGGAATANTTGACCAGTACTGGAACTGCGGATTTTTGTNTATCAACAAAAAAAAGACTCNNACATTGCCCTCNATGAAATCGNNGCAGGCAGTGCACATGNTGGTNCGGAGGGCACTGGCAGTCACTTAATGTCCGGAAC------TT------------ATT--------------------TAAC------AAT-TA-----------CATCGAATAGCCGTAGCGATTATGCAGACATTTCCTACGCGCCTGNCATG-AA---AAC-GCAC---------A-CTCTG--A--CA--ACATATGCAGGTCTCTNGACCATCGTCAACA-TTCTGGCACCAATCGATGATATCTGGAACACATAAGAATCTTTCCGNAACACCATAT------TCATGCATAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTCNG-AC-GGTTTGAAAACAGCGCACTTGCANTTGACATACGCTACTCTGACACAACCTATGCGGGTNTCTAGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATATGCGTAACTCCAGAACCACGCATTNTTGCA--CG-----CAA--N--A-----------ACNCATGCAATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTTCTATCCGTTTGCGATGAAAACNGCATACTTGCAATTGACACG--TATC--ACTCTCGTCTGTCNTANA--TGTGACGNTTTCAGA--AAAGGAATCTGCTCTACCCGCCGATGATACATTTGCCTGAANAATGCANTGGCAAACCGNTGCCCCCTAACCAGTCCCCAGTGGTATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGTTATTACCGGGGT----CTGTCCGGTATTGTTATTATTTATC-GTAAATTTNCAT---A--AT-AN-GTCT---ATATATTCTATTTTGGCAATTTATTTTGAANT-AT--CT----CTT--ACTNGAATTTCATGCTTGTTTAATCGGGGTGTACTTTTGATAAACCAATAANGAAAGATA--GAAATGAACACG------CTTACCATTANATAAC--AANAGCTAATTAC-T---NTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTC--AACGAATAGATGGAGAA-A--CC--T--AT--CAAGGGGAATAACTTTGNTAAATNATNAATAAGGTCTGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAAC-A-AGCATCGTATTTGTCATAATTGGTTTA-TT-ATTCC-AATA-AA---A-CAATA-ATTTTAAA-TAT-ATTACTTNAAAAATGG---------TGACGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG----------T----C---------ATTGTGCCAAGT-TTGNTGC------TTTTGT-NAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAAC-CGTTATAACTAGTTCAT------TGTGGCTGTTATCTGATCCTTTG---------------------TTAGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA------------A---------TAAGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAACATAA-------TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC------TT------------ATT--------------------TAAC------AA---A-----------CATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATG-GA---AAC-GCAC---------A-CTCTG--A--CA-----TATGCAGGTCTCTTGACCATCGTCAACA-ATCTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTTTCCAGTCAGTAC-AGTTTGAAAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGTCCCTAGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTGCA--CG-----CAA--G--A-----------ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATC--ACTCTCGTATGTTATACA--CGTGTCACTTTCAGA--AAAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGTCTCTTATGGCATTAATGA-AACTTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGT------TGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATT-ATACATTTACAT---AATAT-AT-ATAT---ATATATTCCATTATAATAATTTATTTTGAAGT-AT--CT----CTTAGACTGGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATA--GAGAGGAATACT------CTTGCCGTTATAAAAC--AAGAGCTTATTGC-T---ATTTTCTTCTTGCATCACTTTCTAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGTC--AACGAATA----AAGAA-A--CC--T--AT--TAAGGAAAATAACTTTGTTAAATTATTAATAAAGTCTTCATG--GGTG--------C-A---------------TATA-TAT-T--AT--------------TTTGTTATCATGTTCAGCAATTCTGTACACAGCTA-AGTATTATATTTGTCATAATTGATTTA-CT-ATTGC-AATA-AA---A-CAATA-ACTTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG----------T----C----------TTGTGCCAGAT-TTGGTGC------TTTTAT-CAAAC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAACT--GATAAATGATAAATAAGGTCTGCATG--TATA--------T-G---------------TATA-TAA----AT--------------ATT-ATATCTTGTCAAACACTTCTGTACACAAA-ATAGAATCGCATTTGTCATAACTGGTTTA-TTTATTCC-AATA-AG---A-TCATA-CATTTAAA-TAT-GTTACTTTAAAAATGA---------TGAC---C-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG----------
gi|11 : ataatttctttcttttttttcatatacatgtacacgtatctttgacacagcacagacattttgcacagcattacaatgacatacatacaatacataatgacattatAAATATA--AAAATGAATACAATGTCATTTACTATTAAACAAC--AAATTGTATATAC-T---TTTTTCTTCTTGTATCACCTTCTAAGCA-TATTT--TCATTATTGGGCTG--ACAGTTTTTATATTT--AA--AATAAATGGAGAA-A--TC--TTAAC--AAAGGGGCATTACTTTTTTAGATAATAAATTTGATCTGCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------TTT-TTATCATGCCAAGCAAGTCTTTACACAATAA-AGCTTCTTATTTGTCATAATTGGTTTA-TT-ATTCC-AGTAGAA---A-TAATA-----CGAA-TCG-AT---TTAAAAAATGctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTCTAGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTT--A--CG-----TAC--T--------------TCTTACGCATTA---AACATACAAGATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATC--GCTCGCGTCTGTTATACA--TGTGACGTTTTAAGA--AActagtaatttt
gi|13 : atttttatgtTTCT-CTTACCTCACGTTTTAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGTC--AA--AATAAATGGAGAA-A--CC-----GT---AAGCG---------TGG-AA--CATAAATAAGGTTTACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACTTT-TTATCATGCCAAGCAATCTTCTACA-----------------TTGTCATAATTGGTTAATTT-ATTCC-AACA-GAAATA-CATTT-TTTTTAAACTAT-TTTATTT----AAT-----------TG-CGTCC-ATTTTtatatctgttta
gi|14 : TTTA-TTTATTCC-AATA-AA---AACAATA-ACTTAAAA-TAT-ATTGCTTTAAAAATGG------------CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA----------T----C---------ATTATGCCAAGT-T---TAC------GTTTGTAAAAAA--AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattATTTTTAAAAT-----------TAATGGCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTAT----CTTGTCTAATATTATCCCAAGT-TTGGTAC------TTTTGT-CAAA---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGG-ATAAATGACCAGTAa
gi|19 : a----------------T--------GAT----------------GTCTGGCCAATTATATTG-TTTTCCTAAGTAACTGCATAAAAT------GTTTTACCa
gi|2 : cagtcagtacataacaataATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAAT----TGTA------------AA--------TAATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAACAAAA----GACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATT-GCAGTCACTTAATGTCCAGAACACCGTATTCGTGCATTTGCGATT--------------------CAACTT----ATT-TAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATG-AA---AGA-ATAC---------A-TTCTG--A--TACCACCTATGCAGGTCGCTTGACCATCCACAGCA-TTCTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--ACT--GAATTGCCGCTAAG--TTATGTAAATAT---CAGTCCG-A----TTTTAAAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGTGTTAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATAT
gi|2 : --A-----------ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATC--ACTCTCGTC--TCTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGGTTAATCAGTGCCC---AA--AA----CAATGGCATTCGAGACAAC-CAT-------TGGAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAATAGTAACTGTTTACCTGGATAT----------------TCCAGTATTATTATTA-TTATTGGTCAATTTACAT---A--A--AA-ACCT---ATATA--CTATTTTGGCAGTTTATGTTGAATT-ATAATTATTGCTTACACTAGGATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-A--GACATGAACACA------CATTCAATTACATAAC--AATAGCTGATAAC-T---ATTTTCTTCTTACATCACTTTTAAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAGTCAAAACGAATAGA--GAAAATG--TC--T--AT--CAATGGAAATTACTTTGATAAAT----AATAAGTCTTGCATG--TGTA--------C-A---------------TATC-TA-----------------------T-GTATCATGTCAGGCAATACTATGCACAAC-ATAGCATCATATTT-T--------GTTTAGTC-ATTCC-AATATAA---A-CAATACA--TCAAA-TAT-A-TACTTT-AAAATGG---------T---GGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-----------------------------TTGGG--AAATATTATTGCCTGTCATTTTGC-CTAGCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAGGACTGTGGC-ATTGTCCTATTTCTTGG-------------TCACGTGTTAGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTA---------TAAGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGTATTCATGCATTTGCGATT--------------------CAACTCATTTAATATA-----------CATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATG-AA---AGA-GCAT---------A-CTCTG--ATTCA--ACATATG-------------CATCGTCAACA-TTCTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--ACT--GAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCTG-CCTGGTAAGAAAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------CTAGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTGCA--TG-----CGC--G--A-----------GCCAACGCATTA---AACACACTAACAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagctAAC------TT------------ATT--------------------TAAC------A---TA-----------CATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCT----TGTAA---AACAGCAC---------AGCTTAT--A--CA--ACATATGCAGGTCT-TCGACCATTGTCACTA-TGGTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--A--CCGAATAGCCGCTACG-TTTATGCAAATGTT-----TCTG-AA-AA--TAGAAACAGCACACTTGCAATTG-----------TCTTACACA-----------TGTCT-----------A--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTGCATTCG-----TAATCC--A-----------ACGCCT--AA-A---AAAATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATA--ACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GA--AAAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTT-ACCAGTTCCCAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-------TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT----GTAATTTTTCAT---A--AT-AC-GT------TATATTCTATTTTGGTAATTTATTTGGAGC--------------------------TCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGATAACGAAAa
gi|4 : gagtcCATGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTGCATTCG-----TAA--TCCA-----------ACGCCT--AA-A---AAAATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATG--TATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GA--AAAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTTA-CCAGTTCCCAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAGT-------ATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT----GTAATTTTTCAT---A--AT-AC-GT------TATATTCTATTTTGGTAATTTATTTGGAGCT--------------------------CATGCTTGTTTAATGGGTTTGTACTTTTAATAAACC------------------AAT-AAC-CG------------A--AGATAACGAAAAAGC-AAGCACAG---TTTTTCTTCTAG--------TCTAA-----------TCAT-AT--GGCAGACACAGTTTTCATAGTG--AA--AACGAATGGAGAA-A--CC--TCTAT--CAAA---AATAA-------GAATAATGAATAAGTTATGCACG--TGTA--------A-A---------------AATA-TAT-T--AA--------------TTT-T-ATCATGTCTAGCAATTCTTTAAATAAC-ATATCAT-GTATTTGTCATAATTGTTTTA-TT--TTCC-ATTA-AA---ATCAATA-ATGTTTAA-CAT-TTTATTTGAAACATCG------------CGGCC-ATTTTGAaagcaagcacagtttttcttctagtctaatcatatggcagacacagttttcatagtgaaaacgaatggagaaacctctatcaaaaataagaataatgaataagttatgcacgtgtaaaaatatattaattttatcatgtctagcaattctttaaataacatatcatgtatttgtcataattgttttattttccattaaaatcaataatgtttaacattttatttgaaacatcgcggccattttga
gi|5 : gagtcaacttatttaacatacattgaatagtcgtagagatcatgcaaacatttcatatgtgtcttgtaaaacagcacagcttatacaacatatgcaggtcttcgaccattgtcactatggtggcaccaatcatatctggaacgcatacgaatctttccagaaaaccattttcgtgcaaaagtaggcaaagataccgaatagccgctacgtttatgcaaatgtttctgaaaatagaaacagcacacttgcaattgtcttacaTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTGCATTCG-----TAATCC--A-----------ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATG--TATC--ACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GG--AAAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTG-CCCTTAACCAGTCCCCAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAGT------T-TTTACCTGGATATTACTAGGGT----CTGTCCGG---TGTTATTATTTATC-GTAAATTTTCAT---A--AT-AA-GT------TATATTCTATTTTGATAATTTATTTGGAGCT-A-------------------------ATGCTTTTTTCA----------------ATTAACTAATAACCAAAGAT---------AACA-----------------AAATAA---------TAATCAC-TTTCTTTCTCTTCCTGTCTCATCTTTT---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAGTC--AA--AATAAATGGAGAA-A--TCTTT--AT--CAA----AA----------AAA-----AATAAGTTATTCATG---GTA--------TAA---------------CATA-TAT-T--A---------------ATT-TTATCACGTCAACCAATTCTTAACACAAC-ATAGCATCTT-TTTGTCATAATTGTCTTA-TT--TTCC-AATA-AA---GTCAATA-ATATTAAA-CAT-GTTATTTTAAACATTG---------T---GGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA----------T----C---------ATTTTGCCAAGT-CTGTTGC------TTTTGT-TTAA---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACAT--TTTAACTAGTTGATGGTGACT-TGG----------ATTT---GGCTCTTTTTCTTGGTCACGTTTTAAAAATACTTACCTCGATTACA--TGTTATCTCTGATCATTAGATC-------ATCC--AACA------------AGTATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAA--ATTATTATTTTGAAT-TATTTTATTTTGGCAATTTAATTTGAAATTAT--CC----CTTC-ACTTGAAGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATA--GAAAGGAACACG------CTCACCATTAAATAGT--AAGAGCTAATTAA-T---TTTTTCTTTTTGCATAGCTTTTTAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAGTC--AA--ATTGAATGAAGAA-ACCCC--T--TT--CAAGGGGAATAACTTTGTCAAATAGAAAAGACGGTCCGCAAG--TGTA--------C-A---------------TATA-TATGTTAAT--------------TTTATTATCATGTCAAGCAATTATGTACACAAT-GTAGCATCATATTTGCCATAATTAAGTCATTT-ATTCCAAATA-AA---AGCAATA-TTTTTGAA-TAT-ATTATTATAAAAAT-----------TG-CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG----------TCTAAC---------ATTGTGCCAAGT-TTGATAC------TTTTGT-AAAAC--AAATAACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTG-----------ATTCATGTGTCAGTCTGCTCATTTAAC------A---TA-----------CATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAG-AACATAAC-ACACGTGTTAATGA-CT-TGACA--CA--ACATAGGCAGGACTCTAAACCAT-GGCAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGG--CA--CCGAATCGCCTTTACGACTCA-GCAGATAGTTCCACT----------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATGTAGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTG--CGTCATTCAA--T--ATAAATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAATT-AT---T----CTT-----TGGATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATA--GAAATGAACAAA------CTTGCCACTAAATAAC--AATAGCTAGTTAC-T---GTTTTCTTCGGGCATCAGTTTTTAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAGTCAAAACGAATA----GAGAA-A--CC--T--CTCCCAAGGGGAATAACTTTGATAAATAATAAATAAGGTCGGCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------TTT-TTATCATATCAAGCCATTCTGCACACAAC-ATATCAGCACATTTGTCATAATTGGTTTATTT-ATTCC-AGTA-AA---A-AAATG-AATTGAAA-TATAATTAaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 222 3333 11 11 111 111111111 111111111111111111111111111111111111111111 11 1111 2222 222 55555555555555555 11 00000000000000000000000 111 333333333 11 1111111 222222 44444444 11 6666666666666666 33333333 4444444444444 55555555555555555555555555555555555555555555555 11111 11 1 11 1 2222 1 00000000000000000000000000000000000000000000 222222222 1111 11 111 333333333333333 99999999999999999999999999999999 33333333333333 44 222222222222222 1111 33333333333333333333333333 444444444444444444444 2 1 1111111111 444444444444444 1111 1111 8888888888888888888888888888888888888888888 111111 222 111
lowQualScore : 1 7 000 1111 6 77 88 888 888888888 0 55 555555555555555555555555555555555555555555 1 2 33 1 22 0 5555 1 1 1 1 1 1 2 1 8 3 0 777 222 5 22 0 1 0 0 66 4 1 0 8888 333 1 0 1 0 0 2 666 22222222222222222 2 00 22222222222222222222222 1 3 6 444 8 222222222 8 3 11 8888888 1 7777 3 1 8 6 0 1 55 333333 77 1 88888888 1 77 0 0 5555555555555555 3 1 11111111 2222222222222 77 5 1 9 1 1 22 88888888888888888888888888888888888888888888888 3 6 6 99 6 1 1 1 66666 0 1 3 11 1 0 11 1 2 55 0 1 3 1 2 0 111 99 3 0 1111 4 0 2 0 55 66666666666666666666666666666666666666666666 11 0 777777777 1 6 22 7777 11 0 0 99 1 444 888888888888888 8 0 88888888888888888888888888888888 999999999999 2 1 5 3 11111111111111 1 0 3 3 4 9999 4 2 4 5 4 4 66 33 2 9999 00 4 1 4 888888888888888 0000 2 1 55 1 4 66 99999999999999999999999999 4 111111111111111111111 8 1 55 0 44 4 8 777 6 5555555555 4 44 2 555555555555555 4 5555 555 1 2222 0 5 77 6666666666666666666666666666666666666666666 6 3 999999 77 000 3 1 0 9 111
lowQualScore : . . ... .... . .. .. ... ......... . .. .......................................... . . .. . .. . .... . . . . . . . . . . . ... ... . .. . . . . .. . . . .... ... . . . . . . ... ................. . .. ....................... . . . ... . ......... . . .. ....... . .... . . . . . . .. ...... .. . ........ . .. . . ................ . . ........ ............. .. . . . . . .. ............................................... . . . .. . . . . ..... . . . .. . . .. . . .. . . . . . . ... .. . . .... . . . . .. ............................................ .. . ......... . . .. .... .. . . .. . ... ............... . . ................................ ............ . . . . .............. . . . . . .... . . . . . . .. .. . .... .. . . . ............... .... . . .. . . .. .......................... . ..................... . . .. . .. . . ... . .......... . .. . ............... . .... ... . .... . . .. ........................................... . . ...... .. ... . . . . ...
lowQualScore : 0 3 333 7777 7 00 33 777 000000000 7 55 888888888888888888888888888888888888888888 0 5 88 0 88 2 2222 2 0 0 0 0 0 5 0 0 2 6 666 666 0 00 8 0 6 8 88 2 0 2 3333 333 0 7 0 7 7 5 000 55555555555555555 5 55 44444444444444444444444 4 2 0 000 0 000000000 0 2 00 4444444 0 8888 2 0 0 4 6 0 66 000000 44 0 66666666 0 00 8 8 0000000000000000 7 7 88888888 7777777777777 99 7 7 3 5 0 00 66666666666666666666666666666666666666666666666 0 7 7 22 7 0 5 0 00000 8 4 2 00 0 6 00 0 0 88 8 0 0 0 5 8 222 55 2 0 2222 2 2 5 0 88 22222222222222222222222222222222222222222222 88 8 888888888 0 0 88 0000 88 8 8 44 0 000 888888888888888 0 8 55555555555555555555555555555555 000000000000 2 0 0 4 11111111111111 6 3 0 0 3 2222 4 6 4 7 4 4 11 11 0 4444 11 4 9 4 888888888888888 6666 1 8 00 0 4 11 11111111111111111111111111 4 888888888888888888888 9 0 66 0 88 0 0 000 0 8888888888 0 66 0 888888888888888 4 9999 111 6 1111 7 7 99 5555555555555555555555555555555555555555555 7 3 222222 77 000 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCG--TG-CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTC-G-AC-GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TCTAGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CA---TTCGCAA-CCA-----------ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGA--AAAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATC-GTAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TT---AT-TCTT--ACT-------GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCAT-CACTTTT-TAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGT----CAA--A-ATGAATGGAGAA-A---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTT-ATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-ATTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTC---TG-CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTGGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTCCG-AC-GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGTNTCTAGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCANATATNNTTG-----CA---TTCGCAA--NA-----------ACGCATGCAATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACNGCATACTTGCAATTGACATG--TATCACTCTCGTCTGTCTTAGA--TGTGACGNTTTCAGA--AAAGGAATCTGCTCTACCNGCCGATGATACATTTGCCTGAANAATGCANTGGCAAACCACTGCCTCTTAACCAGT-CCC----CAGTGGTATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTAGGGT----CTGTCCAGTGTTATTATTATTTATC-GTAAATTTNCAT---AATACGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAG-CT---AT-TCTT--ACT-------GG-ATTTCATGCTTGTTTAATCGGGGTGTACTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCAT-CACTTTT-TAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGT----CAACGA-ATAAATGGAGAA-A---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTA-TT-ATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATGG---------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAACCGTTATA-ACTAGTTCAT-------TGTGGCTGTTA--TCT-GATCCTTTGT-------T-AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA-A-----------TA--------AGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC-----------------------TT----ATTTAAC------AA---------------ACATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATGGA---AAC-GCAC---------A-CTCTGA--CA-------TATGCAGGTCTCTTGACCATCGTCAACA-ATCTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTTTCCAGTCAGTAC-AGTTTGAAAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGTCCCTAGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTG-----CA-----CGCAA--GA-----------ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATCACTCTCGTATGTTATACA--CGTGTCACTTTCAGA--AAAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGT-CTC----TTATGGCATTAATGA-AACTTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGT------TGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATT-ATACATTTACAT---AATATATATATAT-----AT-ATTCCATTATAATAATTTATTTTGAA-GT---ATCTCTTAGACT-------GGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATACT------CTTGCCGTTATAAAACAAGAGCTTATTGCT---ATTTTCTTCTTGCAT-CACTTTC-TAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGT----CAACGA-ATAA----AGAA-A---C--CT--AT--TAAGGAAAATAACTTTGTTAAATTATTAATAAAGTC-TTCATG--GGTG--------C-A---------------TATA-TAT-T--AT--------------TTTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTATTATATTTGTCATAATTGATTTA-CT-ATTGC-AATA-AA---A-CAAT---A-AC---TTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG---------------T----C-----TTGTGCCAGAT-TTGGTGC------TTTTAT-CAAAC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAATTTCT---TTCTTTTTTTT-CATATACATGTACACGTA-T-CTT--TGA-CACAGCACAGACAT--TTTGCACAGCATTACAATGACATACAT--ACAATA---C--AT--AA--TGACATTATTAACT--GATAAATGATAAATAAGGTC-TGCATG--TATA--------T-G---------------TATA-TAA----AT--------------ATT-ATATCTTGTCAAACACTTCTGTACACAAAATAGAATCGCATTTGTCATAACTGGTTTATTT-ATTCC-AATA-AG---A-TCAT---A-CA---TTTAAA-TAT-GTTACTTTAAAAATGA---------T---GACC-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG---------------
gi|11 : aAAATATAAAAATGAATACAATGTCATTTACTATTAAACAACAAATTGTATATACT---TTTTTCTTCTTGTAT-CACCTTC-TAAGCA-TATTT--TCATTATTGGGCTG--ACAGTTTTTATATT----TAA--A-ATAAATGGAGAA-A---T--CTTAAC--AAAGGGGCATTACTTTTTTAGATAATAAATTTGATC-TGCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------TTT-TTATCATGCCAAGCAAGTCTTTACACAATAAAGCTTCTTATTTGTCATAATTGGTTTA-TT-ATTCC-AGTAGAA---A-TAATACGA-ATCGATTTAAA-ctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTCTAGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTTA-----CGTACTTC------TT-----------ACGCAT----TA---AACATACAAGATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATCGCTCGCGTCTGTTATACA--TGTGACGTTTTAAGA--AAaaatgctagtaatttt
gi|13 : atttttatgtTTCT-CTTACCT-CACGTTT-TAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGT----CAA--A-ATAAATGGAGAA-A---C--C---GT---AAGCG---------TGG--AAC-ATAAATAAGGTT-TACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACTTT-TTATCATGCCAAGCAATCTTCTACA----------------TTGTCATAATTGGTTAATTT-ATTCC-AACA-GAAATA-CATT---T-TT---TTTAAACTAT-TTTATTT----AAT-----------TG-CGTCC-ATTTTtatatctgttta
gi|14 : TTTA-TTTATTCC-AATA-AA---AACAAT---A-AC---TTAAAA-TAT-ATTGCTTTAAAAATG-----------G-CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA---------------T----C----ATTATGCCAAGT-T---TAC------GTTTGTAAAAAA--AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattTTTAAAATTAA---------TG---GCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTATCTTGT----CTAATATTATCCCAAGT-TTGGTAC------TTTTGT-CAAA---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgattTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGG-ATAAATGACCAGTAa
gi|19 : a----------------T--------GAT----------------GTCTGGCCAATTATATTGTTTT-CCTAAGTAACTGCATAAAAT------GTTTTACCa
gi|2 : cagtcagtacataacaataATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATT----GTA-AA----------TA--------ATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGT----ATTCG--TG-CA-TTTGCG-ATTCAAC-----TTAT-TTAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATGAA---AGA-ATAC---------A-TTCTGA--TA--CCACCTATGCAGGTCGCTTGACCATCCACAGCA-TTCTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--ACT--GAATTGCCGCTAAG--TTATGTAAATAT---CAGTCCG-A----TTTTAAAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGTGTTAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATA
gi|2 : A-----------ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATCACTCTCGTC--TCTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGG--------------TTAATCAGTGCCCAAAACAATGGCATTCGAGACAAC-CAT-------TGGAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAATAGTAACTGTTTACCTGGATAT----------------TCCAGTATTATTATTA-TTATTGGTCAATTTACAT---AAAAACC---TAT-----AT-A--CTATTTTGGCAGTTTATGTTGAA-TTATAAT-TATT--GCTTACACTAGG-ATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACACA------CATTCAATTACATAACAATAGCTGATAACT---ATTTTCTTCTTACAT-CACTTTT-AAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAGT----CAA--A-ACGAATAGAGAA-AATGT--CT--AT--CAATGGAAATTACTTTGATAAATAATAA-----GTCTTGCATG--TGTA--------C-A---------------TATC-TA-----------------------T-GTATCATGTCAGGCAATACTATGCACAACATAGCATCATATTT-T--------GTTTAGTC-ATTCC-AATATAA---A-CAAT---ACA-----TCAAA-TAT-A-TACTTT-AAAATGG---------T---GGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-----------------------------TTGGG--AAATATTATTGCCTGTCATTTTGC-CTAGCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAtaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAG-GACTGTGGC-ATTG--TCCTATTTCTTGGTCACGTGTT-AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTATA--------AGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGT----ATTCA--TG-CA-TTTGCG-ATTCAACTCATTTAATAT------------ACATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATGAA---AGA-GCAT---------A-CTCTGATTCA--ACA--TATG-------------CATCGTCAACA-TTCTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--ACT--GAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCTG-CCTGGTAAGAAAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------CTAGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTG-----CA---TGCGCGAGCCA-----------ACGCAT----TA---AACACACTAACAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagct-ATTTAAC-------AT--------------ACATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCTTGTA---A---AACAGCAC---------AGCTTATA--CA--ACA--TATGCAGGTCT-TCGACCATTGTCACTA-TGGTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--AC--CGAATAGCCGCTACG-TTTATGCAAATGTTTCT-----G-AA-AAT--AGAAACAGCACACTTGCAATTG-----------TCTTACAC----------------------ATGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTG-----CA---TTCGTAATCCA-----------ACGCCT--AA-A---AAAATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GA--AAAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTT-ACCAGT-TCC----CAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-------TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT----GTAATTTTTCAT---AATACGT-----T-----AT-ATTCTATTTTGGTAATTTATTTGGAG-C-----------------------------TCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGAT---AACGAAAAAG------C------------AAGCACAG------------TTTTTCTTCTAG---------TC-TAA-----------TCAT-AT--GGCAGACACAGTTTTCATAGT----GAA--A-ACGAATGGAGAA-A---CCTCT--AT--CAA---AAATAA-------GAATAATGAATAAGTTA-TGCACG--TGTA--------A-A---------------AATA-TAT-T--A---------------ATT-TTATCATGTCTAGCAATTCTTTAAATAACATATCAT-GTATTTGTCATAATTGTTTTA-TT--TTCC-ATTA-AA---ATCAAT---A-AT---GTTTAA-CAT-TTTATTTGAAACAT-----------CG-CGGCC-ATTTTGAa
gi|5 : gagtcaacttTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTG-----CA---TTCGTAATCCA-----------ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATG--TATCACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GG--AAAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCC-CTTAACCAGT-CCC----CAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAGT------T-TTTACCTGGATATTACTAGGGT----CTGTCCGGTG---TTATTATTTATC-GTAAATTTTCAT---AATAAGT-----T-----AT-ATTCTATTTTGATAATTTATTTGGAG-CT---A--------------------------ATGCTT----------------TTTTCAATTAACTAATAACCAAAGAT-------AACA-----------------AAATAA-------TAATCACTTTCTTTCTCTTCCTGTCT-CATCTTT-T---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAGT----CAA--A-ATAAATGGAGAA-A---T----------------------CTTTATCAAA-AAAAAATAAGTTA-TTCATG---GTA--------TAA---------------CATA-TAT-T--A---------------ATT-TTATCACGTCAACCAATTCTTAACACAACATAGCATCTT-TTTGTCATAATTGTCTTA-TT--TTCC-AATA-AA---GTCAAT---A-AT---ATTAAA-CAT-GTTATTTTAAACAT-----------TG-TGGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA---------------T----C----ATTTTGCCAAGT-CTGTTGC------TTTTGT-TTAA---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACATTTT-A-ACTAGTTGATG-GTGACT-TGGA-TTTGGCTCT-TTTTCTTGGTCACGT-TTTAAAAATACTTACCTCGATTACATGT--TATCTCTGATCATTAGATC-------ATCC--AACA-AG----------TATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAAAT-TAT---TATTTTGAATTATTTTATTTTGGCAATTTAATTTGAAATT---AT-CCCTTCACTT------GA-AGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACACG------CTCACCATTAAATAGTAAGAGCTAATTAAT---TTTTTCTTTTTGCAT-AGCTTTT-TAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAGT----CAA--A-TTGAATGAAGAA-ACC-C--CT--TT--CAAGGGGAATAACTTTGTCAAATAGAAAAGACGGTC-CGCAAG--TGTA--------C-A---------------TATA-TATGTTAAT--------------TTTATTATCATGTCAAGCAATTATGTACACAATGTAGCATCATATTTGCCATAATTAAGTCATTT-ATTCCAAATA-AA---AGCAAT---A-TT---TTTGAA-TAT-ATTATTATAAAAAT-----------TG-CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG---------------TCTAAC----ATTGTGCCAAGT-TTGATAC------TTTTGT-AAAAC--AAATAACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTGATTCATGTGTCAGTCTGCTCATTTAAC-------AT--------------ACATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAGAACATAAC-ACACGTGTTAATGA-CT-TGA--CACAACA--TAGGCAGGACTCTAAACCAT-GGCAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGG--CA--CCGAATCGCCTTTACGACTCA-GCAGATAGTTCCACT----------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATGTAGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTGCGTCA---TT--CAA--TATAAATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAA-TT---AT-TCTT----T-------GG-ATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAAA------CTTGCCACTAAATAACAATAGCTAGTTACT---GTTTTCTTCGGGCAT-CAGTTTT-TAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAGT----CAA--A-ACGAATAGAGAA-A---C--CT--CTCCCAAGGGGAATAACTTTGATAAATAATAAATAAGGTC-GGCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------TTT-TTATCATATCAAGCCATTCTGCACACAACATATCAGCACATTTGTCATAATTGGTTTATTT-ATTCC-AGTA-AA---A-AAAT---G-AA---TTGAAA-TATAATTAaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 222 3333 11 11 111 111111111 111111111111111111111111111111111111111111 11 1111 2222 222 22222222222222222 11 00000000000000000000000 111 333333333 11 1111111 222222 44444444 11 66666666666666666 33333333 6666666666666666 11111 33333333333333333 333333333 11111 11 1 11 1 2222 1 00000000000000000000000000000000000000000000 222222222 1111 111 111 33333333333 88888888888888888888 33333333333333 333333333333333333333333 33333333333333333333333333 444444444444444444444 1 1111111111 444444444444 1111 1111 8888888888888888888888888888888888888888888 111111 222 111
lowQualScore : 1 7 000 1111 6 77 88 777 888888888 0 55 555555555555555555555555555555555555555555 1 2 33 1 22 0 5555 1 1 1 1 1 1 2 1 8 3 0 777 222 5 22 0 1 0 0 66 4 1 0 8888 333 1 0 1 0 0 2 666 66666666666666666 2 00 22222222222222222222222 1 1 6 444 8 222222222 8 3 11 8888888 1 7777 3 1 8 6 0 1 55 333333 77 1 88888888 1 77 0 0 77777777777777777 3 1 11111111 2222222222222222 77 5 1 9 1 1 22 66666 3 66666666666666666 999999999 3 6 6 99 6 1 1 33333 1 1 11 1 0 11 1 55 0 0 1 1 2 0 444 99 3 0 1111 4 0 2 0 2 0 66666666666666666666666666666666666666666666 11 0 777777777 1 0 22 7777 11 11 777 1 444 333 66666666666 8 0 88 11111111111111111111 6 44 888888888888 0 1 5 3 11111111111111 1 0 3 3 4 9999 4 2 4 5 4 4 66 33 2 66 4 4 333333333333333333333333 66 1 55 1 4 66 99999999999999999999999999 4 111111111111111111111 8 1 55 3 2 4 8 777 6 5555555555 4 44 44 666666666666 4 4 5555 555 1 2222 0 5 77 6666666666666666666666666666666666666666666 6 3 999999 77 000 3 1 0 9 111
lowQualScore : . . ... .... . .. .. ... ......... . .. .......................................... . . .. . .. . .... . . . . . . . . . . . ... ... . .. . . . . .. . . . .... ... . . . . . . ... ................. . .. ....................... . . . ... . ......... . . .. ....... . .... . . . . . . .. ...... .. . ........ . .. . . ................. . . ........ ................ .. . . . . . .. ..... . ................. ......... . . . .. . . . ..... . . .. . . .. . .. . . . . . . ... .. . . .... . . . . . . ............................................ .. . ......... . . .. .... .. .. ... . ... ... ........... . . .. .................... . .. ............ . . . . .............. . . . . . .... . . . . . . .. .. . .. . . ........................ .. . .. . . .. .......................... . ..................... . . .. . . . . ... . .......... . .. .. ............ . . .... ... . .... . . .. ........................................... . . ...... .. ... . . . . ...
lowQualScore : 0 3 333 7777 7 00 33 777 000000000 7 55 888888888888888888888888888888888888888888 0 5 88 0 88 2 2222 2 0 0 0 0 0 5 0 0 2 6 666 666 0 00 8 0 6 8 88 2 0 2 3333 333 0 7 0 7 7 5 000 88888888888888888 5 55 44444444444444444444444 4 0 0 000 0 000000000 0 2 00 4444444 0 8888 2 0 0 4 6 0 66 000000 44 0 66666666 0 00 8 8 22222222222222222 7 7 88888888 7777777777777777 99 7 7 3 5 0 55 77777 3 88888888888888888 333333333 0 7 7 22 7 0 5 66666 4 0 00 0 6 00 0 88 8 2 0 2 5 8 888 55 2 0 2222 2 2 5 0 5 2 22222222222222222222222222222222222222222222 88 8 888888888 0 8 44 0000 88 66 666 4 000 222 22222222222 0 8 22 55555555555555555555 7 55 777777777777 3 0 0 4 11111111111111 6 3 0 0 3 2222 4 6 4 7 4 4 11 11 0 11 4 4 333333333333333333333333 66 8 00 0 4 11 11111111111111111111111111 4 888888888888888888888 9 0 66 2 3 0 0 000 0 8888888888 0 66 00 333333333333 4 4 9999 111 6 1111 7 7 99 5555555555555555555555555555555555555555555 7 3 222222 77 000 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTC---AC--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCAT-CACTTTT-TAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAG--TCAAAACGA-ATGGAGA-AA---C--CT--AT--CAAGGGGA--AT-AACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTCG--AC--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GC-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCAT-CACTTTT-TAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAG--TCAAAATGA-ATGGAGA-AA---C--CT--AT--CAAGGGGA--AT-AACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAACCGTTATA-ACTAGTTCAT-------TGTGGCTGTTA--TCT-GATCCTTTGT-------T-AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA-A-----------TA--------AGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC-----------------------TT----ATTTAAC------AA---------------ACATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATGGA---AAC-GCAC---------A-CTCTGA--CA-------TATGCAGGTCTCTTGACCATCGTCAACA-ATCTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTTTCCAGTCAGTAC--AGTTTGAAAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGT-CCCT-AGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTG-----CA--C---GC-AA-G-A-----ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATCACTCTCGTATGTTATACA--CGTGTCACTTTCAGAA--AAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGT-CTC----TTATGGCATTAATGA-AACTTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGT------TGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATTA-TACATTTACAT---AATATATATATAT-----AT-ATTCCATTATAATAATTTATTTTGAA-GTATC-----T-CTTAGAC--T-GGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATACT------CTTGCCGTTATAAAACAAGAGCTTATTGCT---ATTTTCTTCTTGCAT-CACTTTC-TAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAG--TC--AACGA-ATAAAGA-AA---C--CT--AT--TAAGGAAA--AT-AACTTTGTTAAATTATTAATAAAGTC-TTCATG--GGTG--------C-A---------------TATA-TAT-T--AT--------------TTTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTATTATATTTGTCATAATTGATTTA-CTATTGC-AATA-AA---A-CAAT---A-AC---TTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG---------------T----C-----TTGTGCCAGAT-TTGGTGC------TTTTAT-CAAAC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAATTTCT---TTCTTTTTTTT-CATATACATGTACACGTA-T-CTT--TGA-CACAGCACAGACAT--TTTGCACAGCATTACAATGACATACATACAA---T--AC--AT---AATGACATTATTAACT--GATAAATGATAAATAAGGTC-TGCATG--TATA--------T-G---------------TATA-TAA----AT--------------ATT-ATATCTTGTCAAACACTTCTGTACACAAAATAGAATCGCATTTGTCATAACTGGTTTATTTATTCC-AATA-AG---A-TCAT---A-CA---TTTAAA-TAT-GTTACTTTAAAAATG-----------A-TGACC-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG---------------
gi|11 : aAAATATAAAAATGAATACAATGTCATTTACTATTAAACAACAAATTGTATATACT---TTTTTCTTCTTGTAT-CACCTTC-TAAGCA-TATTT--TCATTATTGGGCTG--ACAGTTTTTATAT--TTAAAATAA-ATGGAGA-AA---T--CTTAAC--AAAGGGGC--AT-TACTTTTTTAGATAATAAATTTGATC-TGCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------TTT-TTATCATGCCAAGCAAGTCTTTACACAATAAAGCTTCTTATTTGTCATAATTGGTTTA-TTATTCC-AGTAGAA---A-TAATACGA-ATCGATTTAAA-ctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTC-T-AGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTTA-----CGTAC---TT----CTT-----ACGCAT----TA---AACATACAAGATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATCGCTCGCGTCTGTTATACA--TGTGACGTTTTAAGAA--Aaaatgctagtaatttt
gi|13 : atttttatgtTTCT-CTTACCT-CACGTTT-TAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTG--TCAAAATAA-ATGGAGA-AA---C--C---GT---AAGCG------------TGG--AAC-ATAAATAAGGTT-TACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACTTT-TTATCATGCCAAGCAATCTTCTACA----------------TTGTCATAATTGGTTAATTTATTCC-AACA-GAAATA-CATT---T-TT---TTTAAACTAT-TTTATTT----AAT-----------TG-CGTCC-ATTTTtatatctgttta
gi|14 : TTTATTTATTCC-AATA-AA---AACAAT---A-AC---TTAAAA-TAT-ATTGCTTTAAAAATG-----------G-CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA---------------T----C----ATTATGCCAAGT-T---TAC------GTTTGTAAAAAA--AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattATTTTTAAAATT----------AA-TGGCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTATCTTGT----CTAATATTATCCCAAGT-TTGGTAC------TTTTGT-CAAA---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGG-ATAAATGACCAGTAa
gi|19 : a----------------T--------GAT----------------GTCTGGCCAATTATATTGTTTT-CCTAAGTAACTGCATAAAAT------GTTTTACCa
gi|2 : cagtcagtacataacaataATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATT----GTA-AA----------TA--------ATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTCAAC-----TTAT-TTAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATGAA---AGA-ATAC---------A-TTCTGA--TA--CCACCTATGCAGGTCGCTTGACCATCCACAGCA-TTCTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--ACT--GAATTGCCGCTAAG--TTATGTAAATAT---CAGTC----C--GATTTTAAAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGT-GT-TAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATA
gi|2 : A-----ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATCACTCTCGTCT--CTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGG--------------TTAATCAGTGCCCAAAACAATGGCATTCGAGACAAC-CATTG-------GAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAATAGTAACTGTTTACCTGGATATT----------------CCAGTATTATTATTATT-ATTGGTCAATTTACAT---AAAAACC---TAT-----AT-A--CTATTTTGGCAGTTTATGTTGAA-TTATAATTATTGCTT--ACACTAGG-ATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACACA------CATTCAATTACATAACAATAGCTGATAACT---ATTTTCTTCTTACAT-CACTTTT-AAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAG--TCAAAACGA-ATAGAGA-AAATGT--CT--AT--CAATGGAA--AT-TACTTTGATAAATAATAA-----GTCTTGCATG--TGTA--------C-A---------------TATC-TA-----------------------T-GTATCATGTCAGGCAATACTATGCACAACATAGCATCATATTT-T--------GTTTAGTCATTCC-AATATAA---A-CAAT---ACA-----TCAAA-TAT-A-TACTTT-AAAATG-----------G-TGGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-----------------------------TTGGG--AAATATTATTGCCTGTCATTTTGC-CTAGCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAtaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAG-GACTGTGGC-ATTG--TCCTATTTCTTGGTCACGTGTT-AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTATA--------AGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGT----ATTCATG---CA-TTTGCG-ATTCAACTCATTTAATAT------------ACATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATGAA---AGA-GCAT---------A-CTCTGATTCA--ACA--TATG-------------CATCGTCAACA-TTCTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--ACT--GAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCT--GCCTGGTAAGAAAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------C-T-AGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTG-----CATGC---GCGAG-CCA-----ACGCAT----TA---AACACACTAACAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagct-ATTTAAC-------AT--------------ACATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCTTGTA---A---AACAGCAC---------AGCTTATA--CA--ACA--TATGCAGGTCT-TCGACCATTGTCACTA-TGGTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--AC--CGAATAGCCGCTACG-TTTATGCAAATGTTTCT----G--AA--AAT--AGAAACAGCACACTTGCAATTG-----------TCTTACACA------------------------TGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTG-----CATTC---GT-AATCCA-----ACGCCTA-AA-A---AA-ATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GAA--AAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTT-ACCAGT-TCC----CAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-------TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT---G-TAATTTTTCAT---AATACGT-----T-----AT-ATTCTATTTTGGTAATTTATT---------------------------T-GG-AGCTCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGAT---AACGAAAAAG------C------------AAGCACAG------------TTTTTCTTCTAG---------TC-TAA-----------TCAT-AT--GGCAGACACAGTTTTCATAG--TGAAAACGA-ATGGAGA-AA---CCTCT--AT--CAA---AA--AT-AA-------GAATAATGAATAAGTTA-TGCACG--TGTA--------A-A---------------AATA-TAT-T--A---------------ATT-TTATCATGTCTAGCAATTCTTTAAATAACATATCAT-GTATTTGTCATAATTGTTTTATT--TTCC-ATTA-AA---ATCAAT---A-AT---GTTTAA-CAT-TTTATTTGAAACAT-----------CG-CGGCC-ATTTTGAa
gi|5 : gagtcaacttTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTG-----CATTC---GT-AATCCA-----ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATG--TATCACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GGA--AAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCC-CTTAACCAGT-CCC----CAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAGT------T-TTTACCTGGATATTACTAGGGT----CTGTCCGGTG---TTATTATTTATCG-TAAATTTTCAT---AATAAGT-----T-----AT-ATTCTATTTTGATAATTTATTTGGAG-CTA----------------------------ATGCTT----------------TTTTCAATTAACTAATAACCAAAGAT-------AACA-----------------AAATAA-------TAATCACTTTCTTTCTCTTCCTGTCT-CATCTTT-T---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAG--TCAAAATAA-ATGGAGA-AA---T-------------------------CTTTATCAAA-AAAAAATAAGTTA-TTCATG---GTA--------TAA---------------CATA-TAT-T--A---------------ATT-TTATCACGTCAACCAATTCTTAACACAACATAGCATCTT-TTTGTCATAATTGTCTTATT--TTCC-AATA-AA---GTCAAT---A-AT---ATTAAA-CAT-GTTATTTTAAACAT-----------TG-TGGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA---------------T----C----ATTTTGCCAAGT-CTGTTGC------TTTTGT-TTAA---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACATTTT-A-ACTAGTTGATG-GTGACT-TGGA-TTTGGCTCT-TTTTCTTGGTCACGT-TTTAAAAATACTTACCTCGATTACATGT--TATCTCTGATCATTAGATC-------ATCC--AACA-AG----------TATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAAAT-TAT---TATTTTGAATTATTTTATTTTGGCAATTTAATTTGAAATTAT------C-CCTTCAC--TTGA-AGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACACG------CTCACCATTAAATAGTAAGAGCTAATTAAT---TTTTTCTTTTTGCAT-AGCTTTT-TAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAG--TCAAATTGA-ATGAAGA-AACC-C--CT--TT--CAAGGGGA--AT-AACTTTGTCAAATAGAAAAGACGGTC-CGCAAG--TGTA--------C-A---------------TATA-TATGTTAAT--------------TTTATTATCATGTCAAGCAATTATGTACACAATGTAGCATCATATTTGCCATAATTAAGTCATTTATTCCAAATA-AA---AGCAAT---A-TT---TTTGAA-TAT-ATTATTATAAAAAT-----------TG-CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG---------------TCTAAC----ATTGTGCCAAGT-TTGATAC------TTTTGT-AAAAC--AAATAACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTGATTCATGTGTCAGTCTGCTCATTTAAC-------AT--------------ACATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAGAACATAAC-ACACGTGTTAATGA-CT-TGA--CACAACA--TAGGCAGGACTCTAAACCAT-GGCAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGG--CA--CCGAATCGCCTTTACGACTCA-GCAGATAGTTCCACT-----------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATG-T-AGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTGCGTCATTCAATAT-AA-ATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAA-TTAT------T-CTT------T-GG-ATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAAA------CTTGCCACTAAATAACAATAGCTAGTTACT---GTTTTCTTCGGGCAT-CAGTTTT-TAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAG--TCAAAACGA-ATAGAGA-AA---C--CT--CTCCCAAGGGGA--AT-AACTTTGATAAATAATAAATAAGGTC-GGCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------TTT-TTATCATATCAAGCCATTCTGCACACAACATATCAGCACATTTGTCATAATTGGTTTATTTATTCC-AGTA-AA---A-AAAT---G-AA---TTGAAA-TATAATTAaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 222 3333 11 11 111 111111111 111111111111111111111111111111111111111111 11 1111 2222 222 22222222222222222 11 00000000000000000000000 111 333333333 11 1111111 222222 44444444 11 6666666666666666 33333333 6666666666666666 11111 33333333333333333 333333333 11111 11 1 11 1 2222 1 00000000000000000000000000000000000000000000 222222222 1111 111 111 33333333333 88888888888888888888 33333333333333 1111 333333333333333 33333333333333333333333333 444444444444444444444 1 1111111111 444444444444 1111 1111 8888888888888888888888888888888888888888888 111111 222 111
lowQualScore : 1 7 000 1111 6 77 88 777 888888888 0 55 555555555555555555555555555555555555555555 1 2 33 1 22 0 5555 1 1 1 1 1 1 2 1 8 3 0 777 222 5 22 0 1 0 0 66 4 1 0 8888 333 1 0 1 0 0 2 666 66666666666666666 2 00 22222222222222222222222 1 1 6 444 8 222222222 8 3 11 8888888 1 7777 3 1 8 6 0 1 55 333333 77 1 88888888 1 77 0 0 1 7777777777777777 3 1 11111111 2222222222222222 77 5 1 9 1 1 22 66666 3 22222222222222222 999999999 3 6 6 99 6 1 1 33333 1 1 11 1 0 11 1 55 0 0 1 1 2 0 444 99 3 0 1111 4 0 2 0 2 0 66666666666666666666666666666666666666666666 11 5 777777777 1 0 22 7777 11 11 777 1 444 333 66666666666 8 0 88 11111111111111111111 6 44 888888888888 0 1 5 3 11111111111111 1 0 3 3 4 00 0 1111 0 0 7 5 5 66 22 3 111111111111111 5555 2 1 55 1 4 66 99999999999999999999999999 4 111111111111111111111 8 1 55 3 2 4 8 777 6 5555555555 4 44 44 666666666666 4 4 5555 555 1 2222 0 5 77 6666666666666666666666666666666666666666666 6 3 999999 77 000 3 1 0 9 111
lowQualScore : . . ... .... . .. .. ... ......... . .. .......................................... . . .. . .. . .... . . . . . . . . . . . ... ... . .. . . . . .. . . . .... ... . . . . . . ... ................. . .. ....................... . . . ... . ......... . . .. ....... . .... . . . . . . .. ...... .. . ........ . .. . . . ................ . . ........ ................ .. . . . . . .. ..... . ................. ......... . . . .. . . . ..... . . .. . . .. . .. . . . . . . ... .. . . .... . . . . . . ............................................ .. . ......... . . .. .... .. .. ... . ... ... ........... . . .. .................... . .. ............ . . . . .............. . . . . . .. . .... . . . . . .. .. . ............... .... . . .. . . .. .......................... . ..................... . . .. . . . . ... . .......... . .. .. ............ . . .... ... . .... . . .. ........................................... . . ...... .. ... . . . . ...
lowQualScore : 0 3 333 7777 7 00 33 777 000000000 7 55 888888888888888888888888888888888888888888 0 5 88 0 88 2 2222 2 0 0 0 0 0 5 0 0 2 6 666 666 0 00 8 0 6 8 88 2 0 2 3333 333 0 7 0 7 7 5 000 88888888888888888 5 55 44444444444444444444444 4 0 0 000 0 000000000 0 2 00 4444444 0 8888 2 0 0 4 6 0 66 000000 44 0 66666666 0 00 8 8 4 2222222222222222 7 7 88888888 7777777777777777 99 7 7 3 5 0 55 77777 3 22222222222222222 333333333 0 7 7 22 7 0 5 66666 4 0 00 0 6 00 0 88 8 2 0 2 5 8 888 55 2 0 2222 2 2 5 0 5 2 22222222222222222222222222222222222222222222 88 6 888888888 0 8 44 0000 88 66 666 4 000 222 22222222222 0 8 22 55555555555555555555 7 55 777777777777 3 0 0 4 11111111111111 6 3 0 0 3 66 3 9999 2 8 6 0 0 99 66 4 111111111111111 5555 1 8 00 0 4 11 11111111111111111111111111 4 888888888888888888888 9 0 66 2 3 0 0 000 0 8888888888 0 66 00 333333333333 4 4 9999 111 6 1111 7 7 99 5555555555555555555555555555555555555555555 7 3 222222 77 000 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCGGTC-G---C--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAA---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCAGTC-A---C--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAA---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAACCGTTATA-ACTAGTTCAT-------TGTGGCTGTTA--TCT-GATCCTTTGT-------T-AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA-A-----------TA--------AGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC-----------------------TT----ATTTAAC------AA---------------ACATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATGGA---AAC-GCAC---------A-CTCTGA--CA-------TATGCAGGTCTCTTGACCATCGTCAACA-ATCTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTTTCCAGTC-AGTAC--AGTTTGAAAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGT-CCCT-AGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTG-----CA--C---GC-AA-G-A-----ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATCACTCTCGTATGTTATACA--CGTGTCACTTTCAGAA--AAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGT-CTC----TTATGGCATTAATGA-AACTTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGT------TGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATTA-TACATTTACAT---AATATATATATAT-----AT-ATTCCATTATAATAATTTATTTTGAA-GTATC-----T-CTTAGAC--T-GGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATACT------CTTGCCGTTATAAAACAAGAGCTTATTGCT---ATTTTCTTCTTGCATCACTTTCTAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGTC--AACGAATAAAGAAA---C--CT--AT--TAAGGAAAATAACTTTGTTAAATTATTAATAAAGTC-TTCATG--GGTG--------C-A---------------TATA-TAT-T--AT--------------TTTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTATTATATTTGTCATAATTGATTTA-CTATTGC-AATA-AA---A-CAAT---A-AC---TTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG---------------T----C-----TTGTGCCAGAT-TTGGTGC------TTTTAT-CAAAC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAACT--GATAAATGATAAATAAGGTC-TGCATG--TATA--------T-G---------------TATA-TAA----AT--------------ATT-ATATCTTGTCAAACACTTCTGTACACAAAATAGAATCGCATTTGTCATAACTGGTTTATTTATTCC-AATA-AG---A-TCAT---A-CA---TTTAAA-TAT-GTTACTTTAAAAATG-----------A-TGACC-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG---------------
gi|11 : ataatttctttcttttttttcatatacatgtacacgtatctttgacacagcacagacattttgcacagcattacaatgacatacatacaatacataatgacattatAAATATAAAAATGAATACAATGTCATTTACTATTAAACAACAAATTGTATATACT---TTTTTCTTCTTGTATCACCTTCTAAGCA-TATTT--TCATTATTGGGCTG--ACAGTTTTTATATTTAAAATAAATGGAGAAA---T--CTTAAC--AAAGGGGCATTACTTTTTTAGATAATAAATTTGATC-TGCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------TTT-TTATCATGCCAAGCAAGTCTTTACACAATAAAGCTTCTTATTTGTCATAATTGGTTTA-TTATTCC-AGTAGAA---A-TAATACGA-ATCGATTTAAA-ctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTC-T-AGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTTA-----CGTAC---TT----CTT-----ACGCAT----TA---AACATACAAGATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATCGCTCGCGTCTGTTATACA--TGTGACGTTTTAAGAA--Aaaatgctagtaatttt
gi|13 : atttttatgtTTCT-CTTACCTCACGTTTTAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGTCAAAATAAATGGAGAAA---C--C---GT---AAGCG---------TGG--AAC-ATAAATAAGGTT-TACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACTTT-TTATCATGCCAAGCAATCTTCTACA----------------TTGTCATAATTGGTTAATTTATTCC-AACA-GAAATA-CATT---T-TT---TTTAAACTAT-TTTATTT----AAT-----------TG-CGTCC-ATTTTtatatctgttta
gi|14 : TTTATTTATTCC-AATA-AA---AACAAT---A-AC---TTAAAA-TAT-ATTGCTTTAAAAATG-----------G-CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA---------------T----C----ATTATGCCAAGT-T---TAC------GTTTGTAAAAAA--AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattATTTTTAAAATT----------AA-TGGCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTATCTTGT----CTAATATTATCCCAAGT-TTGGTAC------TTTTGT-CAAA---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGG-ATAAATGACCAGTAa
gi|19 : a----------------T--------GAT----------------GTCTGGCCAATTATATTG-TTTTCCTAAGTAACTGCATAAAAT------GTTTTACCa
gi|2 : cagtcagtacataacaataATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATT----GTA-AA----------TA--------ATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTCAAC-----TTAT-TTAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATGAA---AGA-ATAC---------A-TTCTGA--TA--CCACCTATGCAGGTCGCTTGACCATCCACAGCA-TTCTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--ACT--GAATTGCCGCTAAG--TTATGTAAATAT---CAGTC-----C--GATTTTAAAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGT-GT-TAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATA
gi|2 : A-----ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATCACTCTCGTCT--CTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGG--------------TTAATCAGTGCCCAAAACAATGGCATTCGAGACAAC-CATTG-------GAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAATAGTAACTGTTTACCTGGATATT----------------CCAGTATTATTATTATT-ATTGGTCAATTTACAT---AAAAACC---TAT-----AT-A--CTATTTTGGCAGTTTATGTTGAA-TTATAATTATTGCTT--ACACTAGG-ATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACACA------CATTCAATTACATAACAATAGCTGATAACT---ATTTTCTTCTTACATCACTTTTAAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAGTCAAAACGAATAGAGAAAATGT--CT--AT--CAATGGAAATTACTTTGATAAATAATAA-----GTCTTGCATG--TGTA--------C-A---------------TATC-TA-----------------------T-GTATCATGTCAGGCAATACTATGCACAACATAGCATCATATTT-T--------GTTTAGTCATTCC-AATATAA---A-CAAT---ACA-----TCAAA-TAT-A-TACTTT-AAAATG-----------G-TGGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-----------------------------TTGGG--AAATATTATTGCCTGTCATTTTGC-CTAGCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAtaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAG-GACTGTGGC-ATTG--TCCTATTTCTTGGTCACGTGTT-AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTATA--------AGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGT----ATTCATG---CA-TTTGCG-ATTCAACTCATTTAATAT------------ACATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATGAA---AGA-GCAT---------A-CTCTGATTCA--ACA--TATG-------------CATCGTCAACA-TTCTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--ACT--GAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCTG---CCTGGTAAGAAAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------C-T-AGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTG-----CATGC---GCGAG-CCA-----ACGCAT----TA---AACACACTAACAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagct-ATTTAAC-------AT--------------ACATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCTTGTA---A---AACAGCAC---------AGCTTATA--CA--ACA--TATGCAGGTCT-TCGACCATTGTCACTA-TGGTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--AC--CGAATAGCCGCTACG-TTTATGCAAATGTTTCTGAAA-A---T--AG-----AAACAGCACACTTGCAATTG-----------TCTTACACA------------------------TGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTG-----CATTC---GT-AATCCA-----ACGCCTA-AA-A---AA-ATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GAA--AAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTT-ACCAGT-TCC----CAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-------TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT---G-TAATTTTTCAT---AATACGT-----T-----AT-ATTCTATTTTGGTAATTTATT---------------------------T-GG-AGCTCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGAT---AACGAAAAAG------C------------AAGCACAG------------TTTTTCTTCTAG--------TCTAA-----------TCAT-AT--GGCAGACACAGTTTTCATAGTGAAAACGAATGGAGAAA---CCTCT--AT--CAA---AAATAA-------GAATAATGAATAAGTTA-TGCACG--TGTA--------A-A---------------AATA-TAT-T--A---------------ATT-TTATCATGTCTAGCAATTCTTTAAATAACATATCAT-GTATTTGTCATAATTGTTTTATT--TTCC-ATTA-AA---ATCAAT---A-AT---GTTTAA-CAT-TTTATTTGAAACAT-----------CG-CGGCC-ATTTTGAa
gi|5 : gagtcaacttTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTG-----CATTC---GT-AATCCA-----ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATG--TATCACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GGA--AAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCC-CTTAACCAGT-CCC----CAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAGT------T-TTTACCTGGATATTACTAGGGT----CTGTCCGGTG---TTATTATTTATCG-TAAATTTTCAT---AATAAGT-----T-----AT-ATTCTATTTTGATAATTTATTTGGAG-CTA----------------------------ATGCTT----------------TTTTCAATTAACTAATAACCAAAGAT-------AACA-----------------AAATAA-------TAATCACTTTCTTTCTCTTCCTGTCTCATCTTTT---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAGTCAAAATAAATGGAGAAA---T----------------------CTTTATCAAA-AAAAAATAAGTTA-TTCATG---GTA--------TAA---------------CATA-TAT-T--A---------------ATT-TTATCACGTCAACCAATTCTTAACACAACATAGCATCTT-TTTGTCATAATTGTCTTATT--TTCC-AATA-AA---GTCAAT---A-AT---ATTAAA-CAT-GTTATTTTAAACAT-----------TG-TGGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA---------------T----C----ATTTTGCCAAGT-CTGTTGC------TTTTGT-TTAA---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACATTTT-A-ACTAGTTGATG-GTGACT-TGGA-TTTGGCTCT-TTTTCTTGGTCACGT-TTTAAAAATACTTACCTCGATTACATGT--TATCTCTGATCATTAGATC-------ATCC--AACA-AG----------TATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAAAT-TAT---TATTTTGAATTATTTTATTTTGGCAATTTAATTTGAAATTAT------C-CCTTCAC--TTGA-AGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACACG------CTCACCATTAAATAGTAAGAGCTAATTAAT---TTTTTCTTTTTGCATAGCTTTTTAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAGTCAAATTGAATGAAGAAACC-C--CT--TT--CAAGGGGAATAACTTTGTCAAATAGAAAAGACGGTC-CGCAAG--TGTA--------C-A---------------TATA-TATGTTAAT--------------TTTATTATCATGTCAAGCAATTATGTACACAATGTAGCATCATATTTGCCATAATTAAGTCATTTATTCCAAATA-AA---AGCAAT---A-TT---TTTGAA-TAT-ATTATTATAAAAAT-----------TG-CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG---------------TCTAAC----ATTGTGCCAAGT-TTGATAC------TTTTGT-AAAAC--AAATAACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTGATTCATGTGTCAGTCTGCTCATTTAAC-------AT--------------ACATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAGAACATAAC-ACACGTGTTAATGA-CT-TGA--CACAACA--TAGGCAGGACTCTAAACCAT-GGCAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGG--CA--CCGAATCGCCTTTACGACTCA-GCAGATAGTTCCACT------------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATG-T-AGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTGCGTCATTCAATAT-AA-ATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAA-TTAT------T-CTT------T-GG-ATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAAA------CTTGCCACTAAATAACAATAGCTAGTTACT---GTTTTCTTCGGGCATCAGTTTTTAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAGTCAAAACGAATAGAGAAA---C--CT--CTCCCAAGGGGAATAACTTTGATAAATAATAAATAAGGTC-GGCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------TTT-TTATCATATCAAGCCATTCTGCACACAACATATCAGCACATTTGTCATAATTGGTTTATTTATTCC-AGTA-AA---A-AAAT---G-AA---TTGAAA-TATAATTAaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 222 3333 11 11 111 111111111 111111111111111111111111111111111111111111 11 1111 2222 222 22222222222222222 11 00000000000000000000000 111 333333333 11 1111111 222222 44444444 11 7777777777777777777 33333333 6666666666666666 11111 33333333333333333 333333333 11111 11 1 11 1 2222 1 00000000000000000000000000000000000000000000 222222222 1111 111 111 33333333333 88888888888888888888 33333333333333 1111 333333333333333 33333333333333333333333333 444444444444444444444 1 1111111111 444444444444 1111 1111 8888888888888888888888888888888888888888888 111111 222 111
lowQualScore : 1 7 000 1111 6 77 88 777 888888888 0 55 555555555555555555555555555555555555555555 1 2 33 1 22 0 5555 1 1 1 1 1 1 2 1 8 3 0 777 222 5 22 0 1 0 0 66 4 1 0 8888 333 1 0 1 0 0 2 666 66666666666666666 2 00 22222222222222222222222 1 1 6 444 8 222222222 8 3 11 8888888 1 7777 3 1 8 6 0 1 55 333333 77 1 88888888 1 77 0 0 2222222222222222222 3 1 11111111 2222222222222222 77 5 1 9 1 1 22 66666 3 22222222222222222 999999999 3 6 6 99 6 1 1 33333 1 1 11 1 0 11 1 55 0 0 1 1 2 0 444 99 3 0 1111 4 0 2 0 2 0 66666666666666666666666666666666666666666666 11 5 777777777 1 0 22 7777 11 11 777 1 444 333 66666666666 8 0 88 11111111111111111111 6 44 888888888888 0 1 5 3 11111111111111 1 0 3 3 4 00 0 1111 0 0 7 5 5 66 22 3 111111111111111 5555 2 1 55 1 4 66 99999999999999999999999999 4 111111111111111111111 8 1 55 3 2 4 8 777 6 5555555555 4 44 44 666666666666 4 4 5555 555 1 2222 0 5 77 6666666666666666666666666666666666666666666 6 3 999999 77 000 3 1 0 9 111
lowQualScore : . . ... .... . .. .. ... ......... . .. .......................................... . . .. . .. . .... . . . . . . . . . . . ... ... . .. . . . . .. . . . .... ... . . . . . . ... ................. . .. ....................... . . . ... . ......... . . .. ....... . .... . . . . . . .. ...... .. . ........ . .. . . ................... . . ........ ................ .. . . . . . .. ..... . ................. ......... . . . .. . . . ..... . . .. . . .. . .. . . . . . . ... .. . . .... . . . . . . ............................................ .. . ......... . . .. .... .. .. ... . ... ... ........... . . .. .................... . .. ............ . . . . .............. . . . . . .. . .... . . . . . .. .. . ............... .... . . .. . . .. .......................... . ..................... . . .. . . . . ... . .......... . .. .. ............ . . .... ... . .... . . .. ........................................... . . ...... .. ... . . . . ...
lowQualScore : 0 3 333 7777 7 00 33 777 000000000 7 55 888888888888888888888888888888888888888888 0 5 88 0 88 2 2222 2 0 0 0 0 0 5 0 0 2 6 666 666 0 00 8 0 6 8 88 2 0 2 3333 333 0 7 0 7 7 5 000 88888888888888888 5 55 44444444444444444444444 4 0 0 000 0 000000000 0 2 00 4444444 0 8888 2 0 0 4 6 0 66 000000 44 0 66666666 0 00 8 8 2222222222222222222 7 7 88888888 7777777777777777 99 7 7 3 5 0 55 77777 3 22222222222222222 333333333 0 7 7 22 7 0 5 66666 4 0 00 0 6 00 0 88 8 2 0 2 5 8 888 55 2 0 2222 2 2 5 0 5 2 22222222222222222222222222222222222222222222 88 6 888888888 0 8 44 0000 88 66 666 4 000 222 22222222222 0 8 22 55555555555555555555 7 55 777777777777 3 0 0 4 11111111111111 6 3 0 0 3 66 3 9999 2 8 6 0 0 99 66 4 111111111111111 5555 1 8 00 0 4 11 11111111111111111111111111 4 888888888888888888888 9 0 66 2 3 0 0 000 0 8888888888 0 66 00 333333333333 4 4 9999 111 6 1111 7 7 99 5555555555555555555555555555555555555555555 7 3 222222 77 000 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCGGTC-G---C--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAA---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCGGTC-G---C--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAA---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAACCGTTATA-ACTAGTTCAT-------TGTGGCTGTTA--TCT-GATCCTTTGT-------T-AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA-A-----------TA--------AGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAATACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC-----------------------TT----ATTTAAC------AA---------------ACATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATGGA---AAC-GCAC---------A-CTCTGA--CA-------TATGCAGGTCTCTTGACCATCGTCAACA-ATCTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTTTCCAGTC-AGTAC--AGTTTGAAAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGT-CCCT-AGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTG-----CA--C---GC-AA-G-A-----ACCCATGCAATA---AACATACAAGAAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTG--TATCACTCTCGTATGTTATACA--CGTGTCACTTTCAGAA--AAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGT-CTC----TTATGGCATTAATGA-AACTTATTTCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGT------TGTTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATTA-TACATTTACAT---AATATATATATAT-----AT-ATTCCATTATAATAATTTATTTTGAA-GTATC-----T-CTTAGAC--T-GGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATACT------CTTGCCGTTATAAAACAAGAGCTTATTGCT---ATTTTCTTCTTGCATCACTTTCTAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGTC--AACGAATAAAGAAA---C--CT--AT--TAAGGAAAATAACTTTGTTAAATTATTAATAAAGTC-TTCATG--GGTG--------C-A---------------TATA-TAT-T--AT--------------TTTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTATTATATTTGTCATAATTGATTTA-CTATTGC-AATA-AA---A-CAAT---A-AC---TTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG---------------T----C-----TTGTGCCAGAT-TTGGTGC------TTTTAT-CAAAC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAACT--GATAAATGATAAATAAGGTC-TGCATG--TATA--------T-G---------------TATA-TAA----AT--------------ATT-ATATCTTGTCAAACACTTCTGTACACAAAATAGAATCGCATTTGTCATAACTGGTTTATTTATTCC-AATA-AG---A-TCAT---A-CA---TTTAAA-TAT-GTTACTTTAAAAATG-----------A-TGACC-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG---------------
gi|11 : ataatttctttcttttttttcatatacatgtacacgtatctttgacacagcacagacattttgcacagcattacaatgacatacatacaatacataatgacattatAAATATAAAAATGAATACAATGTCATTTACTATTAAACAACAAATTGTATATACT---TTTTTCTTCTTGTATCACCTTCTAAGCA-TATTT--TCATTATTGGGCTG--ACAGTTTTTATATTTAAAATAAATGGAGAAA---T--CTTAAC--AAAGGGGCATTACTTTTTTAGATAATAAATTTGATC-TGCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------TTT-TTATCATGCCAAGCAAGTCTTTACACAATAAAGCTTCTTATTTGTCATAATTGGTTTA-TTATTCC-AGTAGAA---A-TAATACGA-ATCGATTTAAA-ctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTC-T-AGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTTA-----CGTAC---TT----CTT-----ACGCAT----TA---AACATACAAGATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC-----TATCGCTCGCGTCTGTTATACA--TGTGACGTTTTAAGAA--Aaaatgctagtaatttt
gi|13 : atttttatgtTTCT-CTTACCTCACGTTTTAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGTCAAAATAAATGGAGAAA---C--C---GT---AAGCG---------TGG--AAC-ATAAATAAGGTT-TACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACTTT-TTATCATGCCAAGCAATCTTCTACA----------------TTGTCATAATTGGTTAATTTATTCC-AACA-GAAATA-CATT---T-TT---TTTAAACTAT-TTTATTT----AAT-----------TG-CGTCC-ATTTTtatatctgttta
gi|14 : TTTATTTATTCC-AATA-AA---AACAAT---A-AC---TTAAAA-TAT-ATTGCTTTAAAAATG-----------G-CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA---------------T----C----ATTATGCCAAGT-T---TAC------GTTTGTAAAAAA--AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattATTTTTAAAATT----------AA-TGGCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTATCTTGT----CTAATATTATCCCAAGT-TTGGTAC------TTTTGT-CAAA---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGG-ATAAATGACCAGTAa
gi|19 : a----------------T--------GAT----------------GTCTGGCCAATTATATTG-TTTTCCTAAGTAACTGCATAAAAT------GTTTTACCa
gi|2 : cagtcagtacataacaataATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATT----GTA-AA----------TA--------ATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAATACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTCAAC-----TTAT-TTAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATGAA---AGA-ATAC---------A-TTCTGA--TA--CCACCTATGCAGGTCGCTTGACCATCCACAGCA-TTCTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--ACT--GAATTGCCGCTAAG--TTATGTAAATAT---CAGTC-----C--GATTTTAAAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGT-GT-TAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATA
gi|2 : A-----ACACAT---ATA---AATATACAA-AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCG--TATCACTCTCGTCT--CTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGG--------------TTAATCAGTGCCCAAAACAATGGCATTCGAGACAAC-CATTG-------GAGTCT----------------TCAATACACAAT----------------ATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAATAGTAACTGTTTACCTGGATATT----------------CCAGTATTATTATTATT-ATTGGTCAATTTACAT---AAAAACC---TAT-----AT-A--CTATTTTGGCAGTTTATGTTGAA-TTATAATTATTGCTT--ACACTAGG-ATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACACA------CATTCAATTACATAACAATAGCTGATAACT---ATTTTCTTCTTACATCACTTTTAAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAGTCAAAACGAATAGAGAAAATGT--CT--AT--CAATGGAAATTACTTTGATAAATAATAA-----GTCTTGCATG--TGTA--------C-A---------------TATC-TA-----------------------T-GTATCATGTCAGGCAATACTATGCACAACATAGCATCATATTT-T--------GTTTAGTCATTCC-AATATAA---A-CAAT---ACA-----TCAAA-TAT-A-TACTTT-AAAATG-----------G-TGGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-----------------------------TTGGG--AAATATTATTGCCTGTCATTTTGC-CTAGCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAtaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAG-GACTGTGGC-ATTG--TCCTATTTCTTGGTCACGTGTT-AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTATA--------AGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAATAC-TGACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGT----ATTCATG---CA-TTTGCG-ATTCAACTCATTTAATAT------------ACATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATGAA---AGA-GCAT---------A-CTCTGATTCA--ACA--TATG-------------CATCGTCAACA-TTCTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--ACT--GAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCTG---CCTGGTAAGAAAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------C-T-AGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTG-----CATGC---GCGAG-CCA-----ACGCAT----TA---AACACACTAACAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagct-ATTTAAC-------AT--------------ACATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCTTGTA---A---AACAGCAC---------AGCTTATA--CA--ACA--TATGCAGGTCT-TCGACCATTGTCACTA-TGGTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--AC--CGAATAGCCGCTACG-TTTATGCAAATGTTTCTGAAA-A---T--AG-----AAACAGCACACTTGCAATTG-----------TCTTACACA------------------------TGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTG-----CATTC---GT-AATCCA-----ACGCCTA-AA-A---AA-ATACAAGAAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GAA--AAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTT-ACCAGT-TCC----CAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACC----------------T--------CATTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-------TATTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT---G-TAATTTTTCAT---AATACGT-----T-----AT-ATTCTATTTTGGTAATTTATT---------------------------T-GG-AGCTCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGAT---AACGAAAAAG------C------------AAGCACAG------------TTTTTCTTCTAG--------TCTAA-----------TCAT-AT--GGCAGACACAGTTTTCATAGTGAAAACGAATGGAGAAA---CCTCT--AT--CAA---AAATAA-------GAATAATGAATAAGTTA-TGCACG--TGTA--------A-A---------------AATA-TAT-T--A---------------ATT-TTATCATGTCTAGCAATTCTTTAAATAACATATCAT-GTATTTGTCATAATTGTTTTATT--TTCC-ATTA-AA---ATCAAT---A-AT---GTTTAA-CAT-TTTATTTGAAACAT-----------CG-CGGCC-ATTTTGAa
gi|5 : gagtcaacttTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTG-----CATTC---GT-AATCCA-----ACGCCTG----A---AACATACAAGAAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATG--TATCACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GGA--AAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCC-CTTAACCAGT-CCC----CAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACTACCTTACAATAT--------GAT----------------GTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAGT------T-TTTACCTGGATATTACTAGGGT----CTGTCCGGTG---TTATTATTTATCG-TAAATTTTCAT---AATAAGT-----T-----AT-ATTCTATTTTGATAATTTATTTGGAG-CTA----------------------------ATGCTT----------------TTTTCAATTAACTAATAACCAAAGAT-------AACA-----------------AAATAA-------TAATCACTTTCTTTCTCTTCCTGTCTCATCTTTT---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAGTCAAAATAAATGGAGAAA---T----------------------CTTTATCAAA-AAAAAATAAGTTA-TTCATG---GTA--------TAA---------------CATA-TAT-T--A---------------ATT-TTATCACGTCAACCAATTCTTAACACAACATAGCATCTT-TTTGTCATAATTGTCTTATT--TTCC-AATA-AA---GTCAAT---A-AT---ATTAAA-CAT-GTTATTTTAAACAT-----------TG-TGGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA---------------T----C----ATTTTGCCAAGT-CTGTTGC------TTTTGT-TTAA---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACATTTT-A-ACTAGTTGATG-GTGACT-TGGA-TTTGGCTCT-TTTTCTTGGTCACGT-TTTAAAAATACTTACCTCGATTACATGT--TATCTCTGATCATTAGATC-------ATCC--AACA-AG----------TATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATTGACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAAAT-TAT---TATTTTGAATTATTTTATTTTGGCAATTTAATTTGAAATTAT------C-CCTTCAC--TTGA-AGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACACG------CTCACCATTAAATAGTAAGAGCTAATTAAT---TTTTTCTTTTTGCATAGCTTTTTAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAGTCAAATTGAATGAAGAAACC-C--CT--TT--CAAGGGGAATAACTTTGTCAAATAGAAAAGACGGTC-CGCAAG--TGTA--------C-A---------------TATA-TATGTTAAT--------------TTTATTATCATGTCAAGCAATTATGTACACAATGTAGCATCATATTTGCCATAATTAAGTCATTTATTCCAAATA-AA---AGCAAT---A-TT---TTTGAA-TAT-ATTATTATAAAAAT-----------TG-CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG---------------TCTAAC----ATTGTGCCAAGT-TTGATAC------TTTTGT-AAAAC--AAATAACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTGATTCATGTGTCAGTCTGCTCATTTAAC-------AT--------------ACATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAGAACATAAC-ACACGTGTTAATGA-CT-TGA--CACAACA--TAGGCAGGACTCTAAACCAT-GGCAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGG--CA--CCGAATCGCCTTTACGACTCA-GCAGATAGTTCCACT------------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATG-T-AGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTGCGTCATTCAATAT-AA-ATATATATATATATGTAACATATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAA-TTAT------T-CTT------T-GG-ATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAAA------CTTGCCACTAAATAACAATAGCTAGTTACT---GTTTTCTTCGGGCATCAGTTTTTAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAGTCAAAACGAATAGAGAAA---C--CT--CTCCCAAGGGGAATAACTTTGATAAATAATAAATAAGGTC-GGCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------TTT-TTATCATATCAAGCCATTCTGCACACAACATATCAGCACATTTGTCATAATTGGTTTATTTATTCC-AGTA-AA---A-AAAT---G-AA---TTGAAA-TATAATTAaaa
blockSeqs : A T TTT GAG G A GC CTA CACGTGTT GG CTATCCAAGGCAGAGGTTTTATCTATA T C AA A TG TGCC T T T G A A G T T A TGA TAA G CC A AT A A AAAA GAC T C G ACC GTTGATTCATGTGTCAG G TC TTATTTAACGTACATGT A G T CAT A GTGTTAATG G C TT CCACC T GCTT C A T A G AT TGAATA TT T TACT T AC TATCTGCCTGGTAAGA A C ACATACAC TTCTGCGGGTCTCT AC G G A G C GC TGCGT A AATATAAATATATAT GTAACATAT G A G AC T C C ATGTA A C CG T A GA G TG G T C CAT TC A G AAAA C C . C TCATTATCTTACAATATGGA TA T TAGTAACTG A AA ACGT TT TA TGG A TAA AAC TATTTTGA T AT TAATTATTGCTTACACTA . TT GTTTAATTCAGG T A T CAATGTCATTTACT A C A G TTCT G C A CT TG A ATGTCTATC GGGG A T AT G T TA TATATGTATGGATACAT C TATTATTATAATACTACT A G CG T T A G AAT A ACGAATCGA C AA TA TA . A AGTC TGG T GTCA T AA TTGCTGGGAATTATCTTGTCTAATA A G CTGTCA AA CTT A A C .
blockSeqs : T . A GGT . T . TT CACGTTTT GT TCATCCAACAAGTATTTCATTA G C . A AG AAAC C T A T A T G C . G GAA TTT T CT G TT A T . . A T G ACG ATTCGTGCA G G TCATTTAATAT A T T . . . . C . CAACA T TCTA C T . G T TT . AT C TACT A T AGTCCGATTTTA A T ACTTACTC CTAGGAGGGTGTTA . . A C T C TC . G GCGAGCCA AAAA A . . . . C T TCG T A . C A . T TG T A C CGC C A . . T C . C TCACTACCTTACAATATGAT AA T TGT T TA . TT TA CG T . ACG TAT . T TCCCTTCACTT . GC GTTTAATGGGTT C A T CACATTCA C C T C T A . . . TG A TCTTAACA TGGA T T TT A . . TATTTATGCA . GTTAATT . T CT T T . T . T ACA . G TA G . . TT TAA A . . . GCTGGAAATAGTATTGTCTAACA . T . C A A A T .
blockSeqs : . TACAGATTAATTGTAAATA C . . C G AAGT T A A G C A . A . G TGA GTT G AC A T G T . ATC ATTCATGCA G G AT A T A . . . . T . ACA A TTC T T . A T AG . AA A TACC A T GAAAATAG G T ACTTGCGC TTAGGTGGGTATGT . . A C T A GT . T GTAATCCA ATA G . . . . G T ATG T G . A . . C . T C . . . . . . T C . . TCAATACACAAT AA G TA A TG . TT A G T . AAG T . C TTCTTT . GT GCTCAATCGCGG C A C CGCTCACC A G C C A G . . . TG A CCTCTATC GGGG T T AT A . . TAA . TATT . C CA T T . . . T TTT . T TT T . . T CGA T . . . CTATCA . T . C C A A C .
blockSeqs : . . . . . AG T T AT T G . . . . . . . ACA . . . G . . A AA . AC G CACC C . ACT G T AT CT . . T G C A TT . T GTAATCCA TA G . . . . G G . T G . A . . TGAT C . TT C . . . T . A . TA T . T T . TT ATCAGG A A G AACTTGCC A T G C T T . . . TA A CCCCTTTC GGGG A T TC A . . TG . ATA . A CT G T . . . G AAC . A GA G . . T CGG T . . . CTATCA . A . T . A A . .
blockSeqs : . . . . . . T . . T CA . T TTCTT TA C . . . . T . . . . . . A . T AGC A C T . T G . . . TA C CCTCTCCC GCG A T TC A . . CA . TAA . T CA T C . . . . ACA . A TA G . . T G T . . . T . . . A . . . . .
blockSeqs : . . G GA . . . . . . . . G . . . . TT A CCGT A A . AT A . . AA . TAA . T CA T T . . . . AAT . T TA C . . . C . . . .
blockSeqs : . . . . . . T . . . G A . . CA . TAT . G G T T . . . . AAT . G T T . .
blockSeqs : . . . . . . CA . . . G . T . . . . . ATT . A . T . .
blockSeqs : . . . . . . GAA .
blockSeqCons : T* CACA*** AT TACC**** ACGGAAA************ GTAATCCA********* TA******* TCATACACAAGGT******************************* TN******* CG* T********** CCTCTNCC******* TAT****************** N*********** *** ***
originalCons : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACTTGACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CA--ACA--TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT-CACTCCGAATAGCCGCTACG-TTTATGCAAATGTTTCCGGTC-G---C--GGTTTGAAAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTC---GT-AA-CCA-----ACGCATG-AATA---AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCC----------------T--------GAT----------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGT------TGTTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT---TAT-----AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAA---C--CT--AT--CAAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TAT-T--AT--------------TTT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATG----------TG-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAAC--AATGCACAATTATCTCACAAATCCGCC---CCCACTA
finalCons : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAATACT-GACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------A-CTCTGA--CACACA---TATGCAGGTCTCTCGACCATCGTCAACA-TTCTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCATAAGTNAGCCAAGGTACC----GAATAGCCGCTACG-TTTATGCAAATGTTTCCACGGAAA------------AAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTCGTAATCCA---------ACGCATTA-------AACATACAAGAAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTG--TATCACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCCTCATACACAAGGT-------------------------------GTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAGTN-------TTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGTT----------AT-ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAACCTCTNCC-------AAGGGGAATAACTTTGNTAAATAATAAATAAGGTC-TGCATG--TGTA--------C-A---------------TATA-TATTAT------------------TT-TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATN-----------G-CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT-CAAA---AATGCACAATTATCTCACAAATCCGCC---CCCACTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111 1111111111111111111111111111111111
lowQualScore : 222 3333 11 11 111 111111111 111111111111111111111111111111111111111111 11 1111 2222 222 22222222222222222 11 00000000000000000000000 111 333333333 11 2222 222222 11111 11 1111111111111111111111111111111111 33333333 6666666666666666 11111 1111111 1111111111 22222222 11 11 1 11 1 2222 1 88888888888888888 333333333 1111 111 111 22222 22222222 88888888888888888888 33333333333333 1111 111111 1111 33333333333333333333333333 3333333333333333333333 11 1 1111111111 222222222222 1111 1111 8888888888888888888888888888888888888888888 111111 22222222222 111
lowQualScore : 1 7 000 1111 6 77 88 777 888888888 0 55 555555555555555555555555555555555555555555 1 2 33 1 22 0 5555 1 1 1 1 1 1 2 1 8 3 0 777 222 5 22 0 1 0 8 8 4 1 0 8888 333 1 0 1 0 0 2 666 66666666666666666 2 00 22222222222222222222222 1 1 6 444 8 222222222 0 11 9999 0 1 7777 6 8 6 0 1 55 333333 88 1 33333 1 1 77 0 6666666666666666666666666666666666 3 1 11111111 2222222222222222 77 5 1 9 1 1 22 66666 3 8888888 9999999999 5 11111111 6 6 99 6 1 1 8 11 1 1 11 1 0 11 1 55 0 0 1 1 2 0 444 99 7 0 1111 4 0 2 0 2 0 00000000000000000 11 0 8 555555555 1 0 22 7777 11 11 777 1 444 333 00000 99999999 3 88 55555555555555555555 6 44 888888888888 0 1 5 3 11111111111111 1 0 3 3 4 00 0 1111 0 0 7 5 5 66 22 111111 0000 1 99999 3 4 66 99999999999999999999999999 4 9999999999999999999999 22 1 55 4 3 2 4 8 777 6 0000000000 4 44 2 1 222222222222 4 5555 555 1 2222 0 5 77 3333333333333333333333333333333333333333333 6 3 999999 11111111111 3 1 0 9 111
lowQualScore : . . ... .... . .. .. ... ......... . .. .......................................... . . .. . .. . .... . . . . . . . . . . . ... ... . .. . . . . . . . . .... ... . . . . . . ... ................. . .. ....................... . . . ... . ......... . .. .... . . .... . . . . . .. ...... .. . ..... . . .. . .................................. . . ........ ................ .. . . . . . .. ..... . ....... .......... . ........ . . .. . . . . .. . . .. . . .. . .. . . . . . . ... .. . . .... . . . . . . ................. .. . . ......... . . .. .... .. .. ... . ... ... ..... ........ . .. .................... . .. ............ . . . . .............. . . . . . .. . .... . . . . . .. .. ...... .... . ..... . . .. .......................... . ...................... .. . .. . . . . . ... . .......... . .. . . ............ . .... ... . .... . . .. ........................................... . . ...... ........... . . . . ...
lowQualScore : 0 3 333 7777 7 00 33 777 000000000 7 55 888888888888888888888888888888888888888888 0 5 88 0 88 2 2222 2 0 0 0 0 0 5 0 0 2 6 666 666 0 00 8 0 6 0 0 2 0 2 3333 333 0 7 0 7 7 5 000 88888888888888888 5 55 44444444444444444444444 4 0 0 000 0 000000000 8 00 8888 6 0 8888 0 0 4 6 0 66 000000 22 0 00000 4 0 00 8 2222222222222222222222222222222222 7 7 88888888 7777777777777777 99 7 7 3 5 0 55 77777 3 2222222 1111111111 7 66666666 7 7 22 7 0 5 8 00 4 0 00 0 6 00 0 88 8 2 0 2 5 8 888 55 0 0 2222 2 2 5 0 5 2 88888888888888888 88 8 0 000000000 0 8 44 0000 88 66 666 4 000 222 00000 00000000 2 22 55555555555555555555 7 55 777777777777 3 0 0 4 11111111111111 6 3 0 0 3 66 3 9999 2 8 6 0 0 99 66 666666 6666 1 33333 7 4 11 11111111111111111111111111 4 7777777777777777777777 22 0 66 7 2 3 0 0 000 0 9999999999 0 66 0 0 888888888888 4 9999 111 6 1111 7 7 99 1111111111111111111111111111111111111111111 7 3 222222 88888888888 2 7 7 3 777
consensus : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAAT-ACT-GACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------ACTCTGA--CAC-AACATATGCAGGTCTCTCGACCATCGTCAACATT-CTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCACAAGTNAGCCAAGGT--A--CCGAATAGCCGCTACG-TTTATGCAAATGTT-----TCCG--C--GG--A---A-------A---AAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTCGTAAT--CCAACGCAT-TA-------AACA-TACAA-----G--AAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTGTATC--ACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCCTCA-T-ACCTTACAATATGATGTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAG-T-N-------TTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT-----TAT--------ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAACC-TCTATCAAGGGGAATAACTTTGNTAAATAATAAATAAGGTCT-GCATG--TGTA--------C-A---------------TATA-TAT-T--A---------------T-TT--TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATNG------------CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT--CAA--A---AATGCACAATTATCTCACAAATCCGCC---CCCACTA
Reference ( family-2681 ) : CCTTANCTGGCTTTCTGAATGTTGTCTGAACATTTTTA-ACTAGTTCATG-G-GACTGTGGC-GTTG--TCC-GTTTCTTGGTCACGT-TT-AGAAATACTTACCACGATTGCATGTGTTATCTCTGATCCTGAGATN-------ATCC--GGCA-AG----------TA--------ANGCCTCCAT--TGGTTTTNTTGGTCAATAAGTATTGATGAAAAANCGTTAATTTATGNTATTTNGNCACTACANATTTTCCTTTTTAANCTGTAAAGTCAANCCATCGGGCGTAACTT-GGATGACCCAGGGAAAATAATGATGACATTTGTATAGTCTGAACTTTTCCTCGCAAAGGGAACTCAAAATNATCAATTCAAATTTTAGGAAT-ACT-GACCAGTACTGGAACTGCGGACNTTTGTGTATCAAC----AAAA---TCANACGTTGCNCTCAATGAAATCGGTATAAGCAGTGTACATGCTGGTACGGAGGGCACTGGCAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTTAAC-----TAAT-T------------ACATCGAATAGCCGTAGCGATTATGCAGACATTTCCTATACGTCTNGCATGAA---AAC-GCAC---------ACTCTGA--CAC-A-CATATGCAGGTCTCTCGACCATCGTCAACATT-CTGGCACCAATCGATGACATATGGAACACATAAGAATCTCTCCGNAACACCATAT------TCATGCATAAGTNAGCCAAGGT--A--CCGAATAGCCGCTACG-TTTATGCAAATGTT-----TCCA--C--GG--A---A-------A---AAACAGCGCACTTGCAATTGACATAC-CTACTCTGACACAACTTA-GCGGGT-TC-T-AGATCATGTCCA--CACTTTGACACGAAC-CGATGATTTCTGGAACACATACGCGTAACTCCAGAACCACATATTNTTG-----CATTCGTAAT--CCAACGCAT-TA-------AACA-TACAA-----G--AAAACGTAGCGAATATGC-A-AA--A-ATTCCTATCCGTTTGTGATGAAAACTGCATACTTGCAATTGACNTGTATC--ACTCTCGTCTGTCTTANA--TGTGACGNTTTCAGAA--AAGGAATCTGCTCTACCNGCTGATGATACATTTGCCTGAACAANGCATTGGCAAACCGCTGCCTCTTAACCAGT-CCC----CAGTGGCATTCGGGACAAC-CATTGCTATATGGAGTCCTCA-T-AC---ACAA---GGTGTCTGGCCAATTCNATTGTTTTTCCTAAGTAACTGCGTAAAG-T-N-------TTTACCTGGNTATTACTGGGGT----CTGTCCAGTGTTATTATTATTTATCG-TAAATTTACAT---AATANGT-----TAT--------ATTCTATTTTGGTAATTTATTTTGAA-TTAT------T-CTT--AC--T-GG-ATTTCATGCTTGTTCAATCGGGGTGTATTTTTGATAAACCAATAANGAAAGATAGAAATGAACACG------CTTGCCATTAAATAACAANAGCTAATTACT---TTTTTCTTCTTGCATCACTTTTTAAGCA-T-TTT--TCATCATTGGGCAGACACAGTTTTCATAGTCAAAACGAATGGAGAAACC-TCTNCCAAGGGGAATAACTTTGNTAAATAATAAATAAGGTCT-GCATG--TGTA--------C-A---------------TATA-TAT-T--A---------------T-TT--TTATCATGTCAAGCAATTCTNTACACAACATAGCATCGTATTTGTCATAATTGGTTTATTTATTCC-AATA-AA---A-CAAT---A-AT---TTTAAA-TAT-ATTACTTTAAAAATNG------------CGGCC-ATTTTGAA---TTGCGGCCATTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------C-TG---------------T----C----ATTGTGCCAAGT-TTGNTGC------TTTTGT--CAA--A---AATGCACAATTATCTCACAAATCCGCC---CCCACTA
gi|1 : CCTTCCCTGGCATTTTGAATGTTGTCTGAACCGTTATA-ACTAGTTCAT-------TGTGGCTGTTA--TCT-GATCCTTTGT-------T-AGAAATACTTGCCATGATTACATATGTTATCTCTGATCCTGAGA----------------GCA-A-----------TA--------AGGCCTTCAT--TGTTTTTCTCGGTCAATAAGTATTGATCAAA----GTTAAATTATGATATATTGTCACTACACATTTTCCTTTTTAATCTGTTAAATCAAACCATCGGGCGTAATTT-AGATGATCCGGGGAAAATAATGATACTATTTGTATAGTTTGAACTATTCCTCGCAAAGGGAATTCAAAAATATCAATTCCAGTTTTAGGAAT-ACTTGACCAGTACTGGAACTGCCGACATTGATGTATCAAC----ATAA---TCACACGTTGCACTCAATGAAATCAGTATAAGTAGTGTACATGCTGGTATGAAGGGCACTGGCAGTCACTTAATGTCTATAAC-----------------------TT----ATTTAAC------AA---------------ACATCAAATAGCCGTTGCGATTGTGCAGACTTTTCCTATACATCTATCATGGA---AAC-GCAC---------ACTCTGA--CA------TATGCAGGTCTCTTGACCATCGTCAACAAT-CTGGCACCAATCGACGACATATGGAACACATAAGCATCTTTCCGCCACACCATAG------TCATGC-CAAGTCAGCAAAGATTCATTCAAAATAGCTGCTAAA-ATTATGTAAATGTT-----TCCAGTC--AG--T---ACAGTTTGA---AAACAACGCACTTGCATTGGACATACATTACTCTGACATAACTTATACGGGT-CCCT-AGACCATGTTCA--CACTTTGACACGAAC-CGATGGTTTCTGGAGCACTTATGCGTAACACCAGAACCACACATTATTG-----CA--CGCAAGAACCCATGCAA-TA-------AACA-TACAA-----G--AAAACGTATCAAATATGC-A-GA--A-ATTTTCATCCGCTTGTGACGAAAACTGCATTCTTGCAATTGACTTGTATC--ACTCTCGTATGTTATACA--CGTGTCACTTTCAGAA--AAGGAATCCGCTCTACCGGCTGGTTACACACTTGCCTGAACAAGGCATTGACAAGCTACTGCCTTCTAGCCAGT-CTC----TTATGGCATTAATGA-AACTTATTTCTATATGGAGTCCT-----------------GATGTCTGGCCAATTCTATTGTTTATCCTAAGCAACTGCGCAATGTT-G-------TTTATCTTGTTATTACTGGGGT----CTGTCAAGTATAGTAATTATTTATTA-TACATTTACAT---AATATATATATATAT--------ATTCCATTATAATAATTTATTTTGAA-GTATC-----T-CTTAGAC--T-GGAATGTCATACTTGTTCGGTCGGGGTGTATTTTTGTTAAACCAATAAAGAAAGATAGAGAGGAATACT------CTTGCCGTTATAAAACAAGAGCTTATTGCT---ATTTTCTTCTTGCATCACTTTCTAACTA-T-TTT--TCATCATAAGGCAGTCACAGTTTTCATAGTC--AACGAATAAAGAAACC-TATT--AAGGAAAATAACTTTGTTAAATTATTAATAAAGTCT-TCATG--GGTG--------C-A---------------TATA-TAT-T--A---------------T-TTTGTTATCATGTTCAGCAATTCTGTACACAGCTAAGTATTATATTTGTCATAATTGATTTA-CTATTGC-AATA-AA---A-CAAT---A-AC---TTTAAA-TAG-ATTACTTAAAAAATGGCAACCATCCTGACGGTC-ATCGTGAA---TTGCGACCAGTT----TGAAAGTGGGTCCATAGC-CAT--TT-------------CATG---------------T----C-----TTGTGCCAGAT-TTGGTGC------TTTTAT--CAA--AC--AGTGCACCGTTATCTCACGCATCTGCCTGTCCCACTA
gi|10 : TAACT--GATAAATGATAAATAAGGTCT-GCATG--TATA--------T-G---------------TATA-TA--A--A---------------TATT--ATATCTTGTCAAACACTTCTGTACACAAAATAGAATCGCATTTGTCATAACTGGTTTATTTATTCC-AATA-AG---A-TCAT---A-CA---TTTAAA-TAT-GTTACTTTAAAAATGA------------TGACC-ATTTTGAA---TTCTGGTCATTT----TGAAAGTGAATCCATAGC-CAT--TT-------------C-TG---------------
gi|11 : ataatttctttcttttttttcatatacatgtacacgtatctttgacacagcacagacattttgcacagcattacaatgacatacatacaatacataatgacattatAAATATAAAAATGAATACAATGTCATTTACTATTAAACAACAAATTGTATATACT---TTTTTCTTCTTGTATCACCTTCTAAGCA-TATTT--TCATTATTGGGCTGACA--GTTTTTATATTTAAAATAAATGGAGAAATC-TTAACAAAGGGGCATTACTTTTTTAGATAATAAATTTGATCT-GCATGTATGTA--------T-ATATGTATGGATACATTATA-TAT-T--AT--------------T-TT--TTATCATGCCAAGCAAGTCTTTACACAATAAAGCTTCTTATTTGTCATAATTGGTTTA-TTATTCC-AGTAGAA---A-TAATACGA-ATCGATTTAAA-ctgagactattctttgttcatcta
gi|12 : aAGCACACTTACCACTGACATACACTACCCTGACACAACTTCTGCGGGTCTC-T-AGATCATGTCCA--CACTTTGACACCAAA-AGATAATTTCTGGAACATATA-----AACTCCGGAACAGCATATGCTTA-----CGTAC-T--T--CTTACGCAT-TA-------AACA-TACAA-----G--ATAACGCAGCGAATATGC-A-GA--ATATTCCTATCCGTTTGCGGTGAAAACTGCATACTTACAATTGAC---TATC--GCTCGCGTCTGTTATACA--TGTGACGTTTTAAGAA--Aaaatgctagtaatttt
gi|13 : atttttatgtTTCT-CTTACCTCACGTTTTAAACA-T-TTTCTTCACCATTGTGCAGACATAGTTTGCATTGTCAAAATAAATGGAGAAACC--------------GTAAGCGTGG--AAC-ATAAATAAGGTTT-ACGTG--TATATATTTATGC-A---------------TATACTAT-T--ATTATTATAATACTACT-TT--TTATCATGCCAAGCAATCTTCTACA----------------TTGTCATAATTGGTTAATTTATTCC-AACA-GAAATA-CATT---T-TT---TTTAAACTAT-TTTATTT----AATTG------------CGTCC-ATTTTtatatctgttta
gi|14 : TTTATTTATTCC-AATA-AA---AACAAT---A-AC---TTAAAA-TAT-ATTGCTTTAAAAATGG------------CGGCC-ATTTCGAAAGTCCATAACCAATTGTCATGGAAAT-AGTC--TGACTCAT--AT-------------C-TA---------------T----C----ATTATGCCAAGT-T---TAC------GTTTGTAAAAA--A---AATACACAATTATCTCACACATCTGCC---CC
gi|16 : ataactaacattTTTAAAATTAA------------TGGCC-ATTTTGAT---TTG--GCTATTT----TGAAAGTGGGTACGTAGC-CAT--TT-------------T-TGCTGGGAATTATCTTGT----CTAATATTATCCCAAGT-TTGGTAC------TTTTGT--CAA--A---AATGCATAATTATCTCAT-AATCTGTC---CCattg
gi|17 : ctgattTT-GGATGACCTAGGAAAATTAATGATGACATAAGTATAGTCTGAACCTTTTCTCCCAAA-GGACCTCAAAATAACCAATTCAAATTTTAGGATA-AAT-GACCAGTAa
gi|19 : aCA-T-A----ACAATATGATGTCTGGCCAATTATATTGTTTT-CCTAAGTAACTGCATAAAA-TGT-------TTTACCa
gi|2 : cagtcagtaATTGCATGTGGTATCAGTTATCCTGAGATACAGATTAATT----GTA-AA----------TA--------ATGCCTCCAT--TTGGTTTATTTGTCAATAAGTACTGATAAAATGCCATTAATTTATGTTATTTTGGCACTACAAACTTTCCTATTTAGACT--AAAGTCAATCCATCGAGCGTAACTTTGGATGACCCAGG-AGAAGAATAA-------------GTCTGAACGTATCCTCGCAAAGGGACTTCGAA-TGATCAATT-AAATTTTAAGAAT-ACT-GACCAGTACTGGAAGTACAAATATTTGTTTATCAAC----AAAAGACTCTTACATTGCCTTCCATGAAATCAGTGTAAGCAGTGCACATGATGGTACGGAGGGCATTG-CAGTCACTTAATGTCCAGAACACCGT----ATTCGTG---CA-TTTGCG-ATTCAAC-----TTAT-TTAACGTACATGTACATCGAATAGCCTTAGCAATTATGCAGGTATTTCGTATACGCCTGACATGAA---AGA-ATAC---------ATTCTGA--TACCA-CCTATGCAGGTCGCTTGACCATCCACAGCATT-CTGACACCAATCAATGACACATGGAACACATAACAATTTCGCCATAACACCATAT------TCATACTTTATTTAGCCAAGGT--A--CTGAATTGCCGCTAAG--TTATGTAAATATCAG---TCC-------G--ATTTT-------A---AAATAGAGCACTAACAATTGACTTACTCTACTCTGACACAACCTAGGAGGGT-GT-TAAGATCATGTCAA--CACTTTTACATGAAC-CAATGAGTTCTTGAACACATA
gi|2 : AACACATATA-------AATA-TACAA--------AAAATGTAAAGAATATGT-AGAA--A-ATTCCTTTCCGTTTGTAATGAAAACTGCATACTTGCACTTGACTCGTATC--ACTCTCGTCT--CTTAAACGTGTGACGCTTTTAAAAGAAAAGAATCTGCTCTACCGGCTAA----ACATTTGGCTAAACAAGACATGGG--------------TTAATCAGTGCCCAAAACAATGGCATTCGAGACAAC-CATTG-------GAGTCTTCAAT-AC---ACAA-----TATATAGCCAATTCC-TT-TTTTTTCTAAGCAACTGTGTAAAA-T-AGTAACTGTTTACCTGGATATT----------------CCAGTATTATTATTATT-ATTGGTCAATTTACAT---AAAAACC-----TAT--------ATACTATTTTGGCAGTTTATGTTGAA-TTATAATTATTGCTT--ACACTAGG-ATTTCATGCTTGTTTAATTCAGGCGTAATTTTGATTAACTAATAATGAAATA-AGACATGAACACA------CATTCAATTACATAACAATAGCTGATAACT---ATTTTCTTCTTACATCACTTTTAAAGCA-T-TTT--TCATCATTGTTCATACACGGTTTTCAAAGTCAAAACGAATAGAGAAAATGTCTATCAATGGAAATTACTTTGATAAATAATAA-----GTCTTGCATG--TGTA--------C-A---------------TATC-TAT-G-------------------------TATCATGTCAGGCAATACTATGCACAACATAGCATCATATTT--------TG-TTTAGTCATTCC-AATATAA---A-CAAT---ACAT---C--AAA-TAT-AT-ACTTTAAAA-TGG------------TGGCT-ATTTTGAA---TTGCGACCATTT----TGAAAGTGGGCCCATAGC-AAT--TT-------------T-T----------------------------TGGG--AAATATTATTGCCTGTCATTTTGC--CTA--GCTTGGTGCACAATTATCTCACAAATCCG-C---TCCACTAtaaatatacaaaaaatgtaaagaatatgtagaaaattcctttccgtttgtaatgaaaactgcatacttgcacttgactcgtatcactctcgtctcttaaacgtgtgacgcttttaaaagaaaagaatctgctctaccggctaaacatttggctaaacaagacatgggttaatcagtgcccaaaacaatggcattcgagacaaccattggagtcttcaatacacaatatatagccaattccttttttttctaagcaactgtgtaaaatagtaactgtttacctggatattccagtattattattattattggtcaatttacataaaaacctatatactattttggcagtttatgttgaattataattattgcttacactaggatttcatgcttgtttaattcaggcgtaattttgattaactaataatgaaataagacatgaacacacattcaattacataacaatagctgataactattttcttcttacatcacttttaaagcatttttcatcattgttcatacacggttttcaaagtcaaaacgaatagagaaaatgtctatcaatggaaattactttgataaataataagtcttgcatgtgtacatatctatgtatcatgtcaggcaatactatgcacaacatagcatcatattttgtttagtcattccaatataaacaatacatcaaatatatactttaaaatggtggctattttgaattgcgaccattttgaaagtgggcccatagcaattttttgggaaatattattgcctgtcattttgcctagcttggtgcacaattatctcacaaatccgctccacta
gi|3 : attgcatgtggtatcagttatcctgagatacagattaattgtaaataatgcctccatttggtttatttgtcaataagtactgataaaatgccattaatttatgttattttggcactacaaactttcctatttagactaaagtcaatccatcgagcgtaactttggatgacccaggagaagaataagtctgaacgtatcctcgcaaagggacttcgaatgatcaattaaattttaagaatactgaccagtactggaagtacaaatatttgtttatcaacaaaagactcttacattgccttccatgaaatcagtgtaagcagtgcacatgatggtacggagggcattgcagtcacttaatgtccagaacaccgtattcgtgcatttgcgattcaacttatttaacgtacatgtacatcgaatagccttagcaattatgcaggtatttcgtatacgcctgacatgaaagaatacattctgataccacctatgcaggtcgcttgaccatccacagcattctgacaccaatcaatgacacatggaacacataacaatttcgccataacaccatattcatactttatttagccaaggtactgaattgccgctaagttatgtaaatatcagtccgattttaaaatagagcactaacaattgacttactctactctgacacaacctaggagggtgttaagatcatgtcaacacttttacatgaaccaatgagttcttgCCTTAACTAGTTGTCTGAATGC---CTGAACATTTTTTTACTAGTTCATGAG-GACTGTGGC-ATTG--TCCTATTTCTTGGTCACGTGTT-AGAAGTTATTACCATGGCTGCATGTGTTATCTCTGATCCTGAGACT-------ATCCAAGGCAGAGGTTTTATCTATA--------AGG--TCCAAAATGGTTTTATTG-TCAATAAATATCGATGAAAAAACGTTAACTTGTGTTATTTAGTCAGTACAAATTTTCCTTTTTTATCTGTAAAGTCAACTCATCGGGCATAACTT-GGATGACCCAGGGAAAATAATGAGAACATTTGTATAATCTGATCTTTTCCTTGCAAATGAAACTCAAAATAGTCAATTCACTTTTTTGGAAT-ACT-GACCCGTACTGGAACTGCAGGCTTCTGTATATCAACAAAAAAAA---TCAAACATTGCTCTCAATGAAATCGCAACAGGCAGTGTACATGCTGGTTTGGACGGCACTGGCAGTCACTTAATGTCCAGAACACGGT----ATTCATG---CA-TTTGCG-ATTCAACTCATTTAATAT------------ACATCGAATAGCCTTAGCGATGATGCATGTATTTCCTACACGCCTTGCATGAA---AGA-GCAT---------ACTCTGATTCA--A-CATATG-------------CATCGTCAACATT-CTGGCACCACTCGATGACATATGGAACACATAAGAATATCTCTTTAATACCATAT------TCATGCATAAGTCAGCCAAGGT--A--CTGAACAGCCGCCACG-TTTGTGCACTTGTTTTCTATCTG--CCTGGTAA---G-------A---AAACAGCGTAGTT---ATTGACTTGCGCTACTCTGACACAAC------------C-T-AGACCATATCCA--CACTTTGACACGAAC-CAATCAGTTATGGAACACAAAAGCGGAGCTCCAGAAACACATATTCTTG-----CATGCGCGAG--CCAACGCAT-TA-------AACA-CACTA-----A--CAAACATAGCGAATA
gi|4 : acaattctcttcagaatatgttctaggtgtgtggcgacagattggaggaaatgtgttttgttttatttggacaaagagtgagattagctattttatcaagatgaaatttcacgactgtgacatattattcctgacctattctatccgtcccgctggtttcaacactaaagccttcaatgttatgtgtgtcctcactactctcctgaatgaattacgaaaagaaaatctcctccattatactgtatagct-ATTTAAC-------AT--------------ACATTGAATAGTCGTAGAGATCATGCAAACATTTCATATGTGTCTTGTA---A---AACAGCAC---------AG-CTTA--TAC-AACATATGCAGGTCT-TCGACCATTGTCACTATG-GTGGCACCAATC----ATATCTGGAACGCATACGAATCTTTCCAGAAAACCATTT------TCGTGCAAAAGTAGGCAAAGAT--A--CCGAATAGCCGCTACG-TTTATGCAAATGTT-----TCT------GA--A---A-------ATAGAAACAGCACACTTGCAATTG-----------TCTTACACA------------------------TGTCTA--CTTTTTGACACGAAC-CTATGATTTCTGGAACACATACGCGTAACTCTAGAACCAAATAAGTTTG-----CATTCGTAAT--CCAACGCCT-AA-------AAAAATACAA-----G--AAAACATAGCGAACAGGC-A-AA--A-TTTTTTATTGGTTTGTGATGAAAACAGCATACTTGCAATTGACATGTATATAACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GAA--AAGGAATCTGCTCTACCTGACAATGATACATTTGCCAGAAGAATGCAATCGCAAACCATTGCCTCTTA-CCAGT-TCC----CAGTGGTATTTGGGACAAC-CATTGCTATATGGAGACCTCA-TTATCTTACAATATGGAGTCTGACTAATTCAATTGTTTTTCTTAAGTAATTGCGTAAAG-T-A-------TTTACCTGGTTATTACAAGGGT----CTGTCCAGTGTTATTATTATTT---G-TAATTTTTCAT---AATACGT-----TAT--------ATTCTATTTTGGTAATTTATTT----------------------------GG-AGCTCATGCTTGTTTAATGGGTTTGTACTTTTAATAAACCAATAACCGAAGAT---AACGAAAAAG------C------------AAGCACAG------------TTTTTCTTCTAG--------TCTAA-----------TCAT-AT--GGCAGACACAGTTTTCATAGTGAAAACGAATGGAGAAACC-TCTATCAA---AAATAA-------GAATAATGAATAAGTTAT-GCACG--TGTA--------A-A---------------AATA-TAT-T--A---------------A-TT--TTATCATGTCTAGCAATTCTTTAAATAACATATCAT-GTATTTGTCATAATTGTTTTATT--TTCC-ATTA-AA---ATCAAT---A-AT---GTTTAA-CAT-TTTATTTGAAACATCG------------CGGCC-ATTTTGAa
gi|5 : gagtcaacttTCCA--CACTTTGACACGAAC-CTATAATTTCTCGAACACTTACGCGTAACTCTAGAACCAAATATTTTTG-----CATTCGTAAT--CCAACGCCT-GA-------AACA-TACAA-----G--AAAACATAGCAAACATGCAA-AA--A-ATTCCTATCGGT------TGAAAACAGCACACTTGCAATTGACATGTATC--ACTCTTGTCTGTCTTAGA--TGTGACAATTTC-GGA--AAGAAATCTGCTCAACCCGCTGATGATACATTTGCCTGATTAATGCACTGACAAACCGCTGCC-CTTAACCAGT-CCC----CAGTGGTATTTGGGACAAC-CATTGCTATATAGAGTCCTCACT-ACCTTACAATATGATGTTTGACTAATTCAATTGGTTTTCTTAAGTAATTGCGTAAAG-T-T-------TTTACCTGGATATTACTAGGGT----CTGTCCGGTG---TTATTATTTATCG-TAAATTTTCAT---AATAAGT-----TAT--------ATTCTATTTTGATAATTTATTTGGAG-CTA----------------------------ATGCTT----------------TTTTCAATTAACTAATAACCAAAGAT-------AACA-----------------AAATAA-------TAATCACTTTCTTTCTCTTCCTGTCTCATCTTTT---CACT-TTT--TCATCATTAGACAGACACAGTTTTCATAGTCAAAATAAATGGAGAAATC-TTTATCAAA---------------AAA----AAATAAGTTAT-TCATG---GTA--------TAA---------------CATA-TAT-T--A---------------A-TT--TTATCACGTCAACCAATTCTTAACACAACATAGCATCTT-TTTGTCATAATTGTCTTATT--TTCC-AATA-AA---GTCAAT---A-AT---ATTAAA-CAT-GTTATTTTAAACATTG------------TGGCC-AATTTGAAT--TTGC------------------TGG--CAATAGT-CTT--GT-------------C-TA---------------T----C----ATTTTGCCAAGT-CTGTTGC------TTTTGT--TTA--A---AATGCAC----GTCTCTCAAATCTGCC---CC
gi|6 : CCTTATCTGGCTTTCTGAATATTGTCTGAACATTTT-A-ACTAGTTGATG-GTGACT-TGGA-TTTGGCTCT-TTTTCTTGGTCACGT-TTTAAAAATACTTACCTCGATTACATGT--TATCTCTGATCATTAGATC-------ATCC--AACA-AG----------TATTTCATTAACGCCTCCTT--TGGTTTTCTTAGTCAATAAGTATTTATGAAAAAGTGTTAATTTATGACATTTAAGCACTTCACATTTTCTTTTTTAAATAGTAAAGTCAAACCATCTGGCGTTACTT-GGATGACCCAGGGAAAAGAATGATGACAGTTGTATAGTCTGAACTTTTCCTCGCAAAGGCAAGTCAAAACTATCAATTCACATTGTAAGAACAATT-GACTAGTACTGGAACTGCGGATTTTTATGTAGCAacaatt
gi|7 : ttgtctttggagaatgttttaggtgcgtgacgactaaacagaagaaatttgtttggttttatttggacatagagtgatattactatttgattaagatgtatattgacgactgtgacagactgtttctgacatattctttctatctgtcttgctgttttctaacacgttagtatccaattacaattccatcctcgttactcaccttaaatggattaccatattccttcattgtgccatatggaTGGCTATAACTGGAGTACGTCTGTCCATTGTTATTATTATTTAT----AAATTTACATTAAAAT-TAT-----TATTTTGAATTATTTTATTTTGGCAATTTAATTTGAAATTAT------C-CCTTCAC--TTGA-AGTTCATGCTTGCTCAATCGCGGTGTATTTTTGATAAACCAATAAAGAAAGATAGAAAGGAACACG------CTCACCATTAAATAGTAAGAGCTAATTAAT---TTTTTCTTTTTGCATAGCTTTTTAATCT-T-TTT--TTATCA-TAGATAACCACAGCTTTCATAGTCAAATTGAATGAAGAAACC-CCTTTCAAGGGGAATAACTTTGTCAAATAGAAAAGACGGTCC-GCAAG--TGTA--------C-A---------------TATA-TATGTTAA---------------T-TTTATTATCATGTCAAGCAATTATGTACACAATGTAGCATCATATTTGCCATAATTAAGTCATTTATTCCAAATA-AA---AGCAAT---A-TT---TTTGAA-TAT-ATTATTATAAAAATTG------------CGGTCAATTTTAAA----TGCGGCCCTTT----TGAAAGTGGGCCCATAGC-CATAATTGCTGGAAATAGTAT-TG---------------TCTAAC----ATTGTGCCAAGT-TTGATAC------TTTTGT--AAAACA---AATA-ACAATATTCTCACAAATCCG-C---CCTACTA
gi|8 : AGGACACTGGCAATCTTTTAATGCCCGGAACATCGTGTTGATTCATGTGTCAGTCTGCTCATTTAAC-------AT--------------ACATCAAATAGCCGTTCAGATTATTCAGACAATTTCAATGAATCTGGCAAGAACATAAC-ACACGTGTTAATGACT-TGA--CAC-AACATAGGCAGGACTCTAAACCATGG-CAACCTTTCTAGCATCAGACAATACTTTCTTGAACACATGAAATTCTCACCAAATCACTATATTGAATATCATTCACAAGTGAGCCAAGGC--A--CCGAATCGCCTTTACGACTCA-GCAGATAGT-----TCCA--C--T---------------------ACAACACACTTGAAA-----AT----TAGTCCGATACAACTTAGGTGGGTATG-T-AGATCATGGCCAACCGTTGTGTTACCAATGCG-TGATATCTGGAGTATATAGGTACAA----ATAGTTATGCATCATCGTGCGTCATTC--AATA-TAAATATATATATATATGTAACA-TATAACATACGACAAAACGTAACGAATATTC-A-AAACA-ATTCCTATCTGTTTGGGATAAAAAATAAACACTTta
gi|9 : TTTTAAA-TTAT------T-CTT------T-GG-ATTCCATGCT------ATCAGG-TGTACTTTTGATAAACCAACAAAGAAAGATAGAAATGAACAAA------CTTGCCACTAAATAACAATAGCTAGTTACT---GTTTTCTTCGGGCATCAGTTTTTAAGCA-T-TTT--TCATCATTTGGCAGACACAGTTTCCATAGTCAAAACGAATAGAGAAACC-TCTCCCAAGGGGAATAACTTTGATAAATAATAAATAAGGTCG-GCATG--TGTA--------C-A---------------TAAA-TAT-T--A---------------T-TT--TTATCATATCAAGCCATTCTGCACACAACATATCAGCACATTTGTCATAATTGGTTTATTTATTCC-AGTA-AA---A-AAAT---G-AA---TTGAAA-TATAATTAaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TATCATTTGTCTTAAGAGCATGTTTTAGGTGGGGGACGAGTAGTTGAAGGAAACTTGTTTAATTTTATTTGGACATAGAGTGAGAATACTGTGACAGACTTTTCCTGACCCATTCTCGCTATCTGTTGAACTGCTTTCTAACATCAAAGCCTT
Unaligned ( gi|18 ): AGTGGCACAGCATAGACATTTTGCACAGTACTACAATAAAATGCATTCATTACATCATGGCATTAACAATATGAAATAAT
Unaligned ( gi|20 ): GGTCCAGTACAGACAATTTGCACAGTATTACAATAAAATGCATTCAATACATGACATCA