lowQualScore : 3333333333333333333333333333333333333333 111111111111111111111111 11111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 6666666666666666666666666 222222222 666666666666666666666666666666 1 11 0000000000000000000000000000000000000000 11 111 2222222 222 1 2 77777777 33333333 1 1 22 000000000000000000000000 11 1 555555 33 1 4444444444 1 22 4444444 333333 1 1 1 5555555 2222 1 1 22 1 11 111 4444444444444444444444444 111 6666666666666666 22222222222 2 2 22222222222222222222 22 1 1 4 1 999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 11 222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 1 1
lowQualScore : 5 6 2 1111111111111111111111111 222222222 8 1 555555555555555555555555555555 0 22 3 8888888888888888888888888888888888888888 8 1 7 0 8 33 000 6666666 111 5 7 1 6 33333333 4 99999999 2 6 7 22 000000000000000000000000 4 1 44 0 000000 2 77 3 1 55 6 5 3333333333 0 3 22 6666666 9 3 2 111111 6 7 7 5 6 3333333 0000 6 5 2 77 7 00 0 6 6 8 0 3 88 11 333 9999999999999999999999999 222 1111111111111111 44444444444 77 3 7 55555555555555555555 4 33 5 6 6 5 0 6 5 000000000000000000000000000000000000000000000000000000000000000000000000000000 9999 6 22 6 111 6 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 888 7 7 6 6
lowQualScore : . . . ......................... ......... . . .............................. . .. . ........................................ . . . . . .. ... ....... ... . . . . ........ . ........ . . . .. ........................ . . .. . ...... . .. . . .. . . .......... . . .. ....... . . . ...... . . . . . ....... .... . . . .. . .. . . . . . . .. .. ... ......................... ... ................ ........... .. . . .................... . .. . . . . . . . .............................................................................. .... . .. . ... . ......................................................................................... . ... . . . .
lowQualScore : 0 0 8 8888888888888888888888888 222222222 4 4 555555555555555555555555555555 0 00 2 5555555555555555555555555555555555555555 3 0 3 7 3 33 000 0000000 333 0 3 0 7 00000000 0 77777777 0 0 0 33 000000000000000000000000 0 0 33 0 555555 5 22 2 0 33 0 0 7777777777 7 3 33 3333333 0 7 5 555555 0 0 0 0 0 0000000 0000 0 0 5 00 0 00 5 7 7 3 7 7 33 33 777 9999999999999999999999999 000 3333333333333333 77777777777 33 3 5 00000000000000000000 0 00 0 0 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 0 00 0 000 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 0 0 0
consensus : TGCACGTCTCACTACACAGTTACGCCCC---TTTC-----------TTGN--CACGGTAGCAAGA--TTCTTGCGCTN---TGN----AA-GTCCTATATGTNATTTGGTT-TGAAATATTTTCAAAATGGTTCATAGA---TGCCTGTGGCTCCTTG---CTACAGATGGG----GGTTTCTTGCTGCAGATGAGTAAAGCAAAAACTGGCATAGCATATGCTGCAATAAGGCATCACCGGTGTT-AAAAAAG-T--GACTTNTATAGGATTTTAGCAG--ATGCATGTATTTATGAGCATTTGAGGACGTCTTTTTTCCTGTCANAANAATCTNAGGCCCANGTGCCACCGCACCGTCTTTAAAA-AAA-C---CAAGCTNGTCAACCTACCAGTTATTGTGCATTTTTATGTGC-GGATACATTTCTGCTATG-----AA---AAATA-CTTT-AAA-AA---NATTNTACGTNGAATTNNTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGNCGTNNGAATNCTGCCGCTGGGTGGGGTTTTATNCAATGTG--TATACGGTNTGATACT--AGTGT-GNTAAC-GCT-CAGA-ATACTGTCTCAAGTAGAC-C-G-CGCGA-CTGATTGAAA-ANT-GTT--AAAAGCGACGNTAAACACCGTACAA-TACAAACACAA-TTTA--GTTG-CTTCCA-AACCTTGTTTTATATAGAACAAAGANCAAAATTCAACTGTGTAATNNNNNNNNNNNNNNNNNNNNNAGAACAAGA-GAAAAACACGTA---TGAAACATAC----CATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACAC
Reference ( gi|1 ) : TGAATGTCTGACTACACAGTTACGCCCC---TTTC-----------TTGA--CACGGTTACATGA--TTATTGCGCTG---TGT----AA-GTCCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTTTAAACAA--T--G--TTTTATAGGATTTAAACTG--ATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGG----GGTGTCACAACACTGATTTTAAAA-AAATCT--CAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAA-AC---CACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACGTTC-AGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATGTGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGC-GCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACTACAACTACAACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATGA---TTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATACAATGAAATTCGCAATAAGAGGATATATGTGATTATAATTTTTTAAGTGAATTTGCATGATGTTCTTGTTTGAAATATNNNNNNNNNNTTTAGTCCCGGCGAGGTACATCGGTAGTGGGTGACAGACCCTTTACCAGTGACGTATTAA
gi|12 : TGCACGTCTAATTACAAAGTTACGTCC-----TTCA----------TTAAT-TACGATTA---GAACTTCTTTCGCTA---TGT----AA-A-CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAAT
gi|3 : tgcGTCTCACTACACAGTTACGCCCCCTTTTTT-----------TTGC--CACGGTAGCAAGA--TTCTTACGCT------TAAAAAA-GGCC--TATGTTCTTTGGTTATAAAGCA-TTTCAAAATGGTTCATAG
gi|2 : TCTCACTACACTGTTGTGCCAC---TTTT-----------TTGT--CATGGTAGCAACA--CTGTTGCACTTAACTGA----AA-GTCCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGATTTCTTG---CTACAGATGAG--------TAAAGCAAAAGCTG-GCAAAGCATATACT-GCA----ATA-------ATA---CATCACTGGTG-TCAAAAAG--T--AACTTCTATAGGATTTTAGCAG--ATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGGCCCATGTGCCATAACtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaaatacttaaaaaaaaatatacgttgaattcttattttatatagaacaaagaacaaaattcaactgtgtaat
gi|4 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagaCTCACTACACAGGTGTGCCCT---TTT-------------TGT--CACGGTAGCAAAA--TTCTTGCACTG---AAA----AATGTCCTAT--GTAATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCC---------------------GGTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAG--TTGTATAGGATTTTAACAG--GTGAATGTACTTATAAGCATTTGAGGACATCGTCTTTgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|13 : ACACAGTTATGCCCT---CTCCCCCTCCCATCTTTGAGCCACGGTAGCATGA--TTATTACaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|3 : GGTTGTGATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAG-T--GACTTTTATAGGATTTCA--CGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTTTC------AAAAAATCTCA-G----GGTGTCACTGCACCCTCTTTAAAA-AAA-AG--CAAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTG-GGAACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAA-AA---AAATATACGTTGAATTCTTATTTTAccaactaaaaagtaccgtgttattcgttggctaaa
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtACATCGTCTTTAAAC-AA------CAAGCTTGTCAGCCTATCAGTTATTGTGCA-TTTTATATGC-GGATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTTATTGTATATtatagaacaaagaacaaaattcaactgtgtaat
gi|2 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggTGACCTAAAAATAAAAC---CAATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTAT-GGATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAA-AA---GATTCTATGTGGAA--AATATTTTAtatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|16 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggAA-AAATCTGACAAGCTGGTCAACCCATCATTTATTATACATTTTaagattaattaaatacaaaga
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCGTTGG-TGGG-TATCATACCATGTG--TAAGCGGCTTGATGC---AGTGT-GGTAAC-GCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAACAACAAACACA
gi|7 : accagagacGCTCGGTGTATGAATTCTGCAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA-----T-C--A-ATATTGT---AAGTAAATTTAGAGGTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-TACAAttatctggtacaatta
gi|9 : aACTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC--CTACATATGTATTGTCTTGAATAG
gi|8 : ttggtcagattgctataatacaacacatgttatTAT-GTCAGCTGTG-TAGA-AAACTATC-CAAGCAGGC-----CA-GA--T--TTGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-TACAA-TACAA-TTTA--GTTG-CTTCCA-AACCTTGTT
gi|3 : CTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAAT
gi|17 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaaatacttaaaaaaaaatatacgttgaattTTTTATATAGAACAAAGATCAAAATTCAACTGT
gi|5 : AGAACAAGA-GAAAAACACGTA---TGAAACATAC----CATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|11 ): CTTACAACATAGGTGTGCCTTTTTTGTCACTGTGACAAGCCTGCTCTTCAAAAATACCATTGTTATTTGATTTGAAAATTTTCAAAATTTTGATTGAACAAAGA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC
Alignments
lowQualScore : 22222222222222222222222222222222222222
lowQualScore : 11111 222222222222 111 11111 1 1 66666666666666666666666666666666666666 22 1111 111111 11 44444 1 1 3333333 11 2222222222 1 11 22222222222222222222222222222 1 11 3333 1 111111 1 666666666666666666 1 1 11 111 1111 1111 22 33333333 222222222222222222222 2 333 4444 222 1 1 2 22222 44444444444 22 11 77777777 2 11 888888888
lowQualScore : 2 1 11111 666666666666 000 1 5 1 0 44444 1 3 3 8 1 6 66 55555555555555555555555555555555555555 0 1 2 4 4 2 33 3333 1 1 4 2 99 888888 1 1 44 1 99999 0 0 0 8 4444444 1 3 00 8888888888 0 11 1 1 1 0 1 8888 99999999999999999999999999999 4 4 2 3 5 4 3 11 22 44 888 2 2 4 1 33 55 4444 0 444444 0 0 8 5 333333333333333333 2 7 0 1 0 33 11 2 000 4444 4 4444 1 33 66666666 1 111111111111111111111 2 0 2 555 4 2 2222 111 2 2 4 5 3 5 0 55555 55555555555 3 4 3 2 77 77 77 22222222 2 3 4 3 2 3 0 88 000000000 4 4 4
lowQualScore : . . ..... ............ ... . . . . ..... . . . . . . .. ...................................... . . . . . . .. .... . . . . .. ...... . . .. . ..... . . . . ....... . . .. .......... . .. . . . . . .... ............................. . . . . . . . .. .. .. ... . . . . .. .. .... . ...... . . . . .................. . . . . . .. .. . ... .... . .... . .. ........ . ..................... . . . ... . . .... ... . . . . . . . ..... ........... . . . . .. .. .. ........ . . . . . . . .. ......... . . .
lowQualScore : 5 0 11111 000000000000 000 0 7 4 7 88888 0 3 2 0 0 7 33 55555555555555555555555555555555555555 2 2 5 2 2 0 55 8888 0 2 2 5 00 000000 0 0 00 0 33333 7 5 0 0 2222222 0 2 22 2222222222 0 22 0 2 0 7 0 3333 00000000000000000000000000000 0 0 5 0 0 0 0 77 00 77 000 5 5 0 0 88 00 0000 0 555555 0 8 0 6 000000000000000000 5 2 0 0 0 88 22 0 000 8888 2 8888 2 88 00000000 0 000000000000000000000 5 0 5 000 0 5 5555 000 5 5 0 5 0 0 0 00000 00000000000 0 0 0 5 55 00 55 55555555 5 0 0 0 5 0 0 00 000000000 0 0 0
consensus : TGNACGTCTCACTACACAGTTGCGCCCC---TT----------TTTT---GTCACGG-TAGCAAGATTCTTGCGCTN---CGAAA-GTCCTATATGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCC-CG---C--------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAT-TGAGG-----GTGTCACNGCACCGTCTTT-AAA-AAAA--C---CAAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGC-GGATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTGCGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACC----GTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACA--A-TTTAC-GTTG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
Reference ( family-2675 ) : TGCACGTCTCACTACACAGTTACGCCCC---TT----------TCTT---GNCACGG-TAGCAAGATTCTTGCGCTN---TGNAA-GTCCTATATGTNATTTGGTT-TGAAATATTTTCAAAATGGTTCATAGA---TGCCTGTGGCTCCTTG---CTACAGATG----GGGGTTTCTTGCTGCAGATGAGTAAAGCAAAAACTGGCATAGCATATGCTGCAATAAGGCATCACCGGTGTT-AAAAAAGT-GACTTNTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGACGTCTTTTTTCCTGTCANAANAATCTNAGGCCCANGTGCCACCGCACCGTCTTT-AAA-AAAA--C---CAAGCTNGTCAACCTACCAGTTATTGTGCATTTTTATGTGC-GGATACATTTCTGCTATG-----AA---AAATA-CTTT-AAAAANATTNTACGTNGAATTNNTATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGNCGTNNGAATNCTGCCGCTGGGTGGGGTTTTATNCAATGTG--TATACGGTNTGATACT--AGTGT-GNTAACGCT-CAGA-ATACTGTCTCAAGTAG--ACC----G-CGCGA-CTGATTGAAA-ANT-GTT--AAAAGCGACGNTAAACACCGTACAA-T-AC---AAACACA--A-TTTA--GTTG-CTTCCA-AACCTTGTTTTATATAGAACAAAGANCAAAATTCAACTGTGTAATNNNNNNNNNNNNNNNNNNNNNAGAACAAG-AGAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTAC-ATCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACAC
gi|1 : TGAATGTCTGACTACACAGTTACGCCCC---TT----------TCTT---GACACGG-TTACATGATTATTGCGCTG---TGTAA-GTCCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTT-TAAACAAT-G--TTTTATAGGATTTAAACTGATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGG----GGTGTCACAACACTGATTTT-AAA-AAAATCT---CAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAAACCACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACG-TTCAGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATGTGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGCGCT-CAGA-ATACTGTCTCAAGTAGACACC----GTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACT-AC---AACTACA--ACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATG---ATTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATAC
gi|11 : CTTACAACATAGGTGTGCC-----TT----------TTTT---GTCACTG-TGACAAG---CCTGCTCTT---CAAAA-ATACCAT-TGTTATTTGATT-TGAAA-ATTTTCAAAATaatgaaattcgcaataagaggatatatgtgattataattttttaagtgaatttgcatgatgttcttgtttgaaatatnnnnnnnnnntttagtcccggcgaggtacatcggtagtgggtgacagaccctttaccagtgacgtattaa
gi|12 : TGCACGTCTAATTACAAAGTTACGTCCT---TC----------ATTA---ATTACGATTAG--AACTTCTTTCGCTA---TGTAA-A-CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAATtttgattgaacaaaga
gi|13 : tgcACACAGTTATGCCCT---CTCCCCCTCCCATCTTTGAGCCACGG-TAGCATGATTATTAC
gi|16 : AA-AAAT--CTGACAAGCTGGTCAACCCATCATTTATTATACATTTTccaactaaaaagtaccgtgttattcgttggctaaa
gi|17 : TTTTATATAGAACAAAGATCAAAATTCAACTGTG
gi|2 : TCTCACTACACTGTTGTGCCAC---TT----------TTTT---GTCATGG-TAGCAACACTGTTGCACTTAACTGAAA-GTCCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGA---------------------------TTTCTTGCTACAGATGAGTAAAGCAAAAGCTGGCAAAGCATATACTGCAATAATACATCACTGGTGTC--AAAAAGT-AACTTCTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGGCCCATGTGCCA
gi|2 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaaga-AAATAAAA--C---CAATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTAT-GGATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAAAAGATTCTATGTGGAA--AATATTTTAtaacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|3 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaGTCTCACTACACAGTTACGCCCCCTTTT----------TTTT---GCCACGG-TAGCAAGATTCTTACGCTT---AAAAAAGGCCTAT--GTTCTTTGGTTATAAAGCATTT-CAAAATGGTTCATAG----------TGG----TTG---T--------------GATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAGT-GACTTTTATAGGATTTCACGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTTTC------AAAAAATCTCAGG-----GTGTCACTGCACCCTCTTTAAAA-AAAA--G---CAAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTGG-GAACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAAAAAAATATACGTTGAATTCTTATTTTAaagattaattaaatacaaaga
gi|3 : AA-T-ACTTAAAAAAAA--A-TATAC-GTTG------A-ATTCTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAATtatagaacaaagaacaaaattcaactgtgtaat
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaCTCACTACACAGGTGTGCCCT---TT----------T--T---GTCACGG-TAGCAAAATTCTTGCACTG---AAAAATGTCCTAT--GTAATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCC---------------------GGTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAGTTGTATAGGATTTTAACAGGTGAATGTACTTATAAGCATTTGAGGACATCGTCTTT
gi|4 : CATCGTCTTT-AAA-CAA-------CAAGCTTGTCAGCCTATCAGTTATTGTGCATTTT-ATATGC-GGATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|5 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggaAGAACAAG-AGAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTAC-ATCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACtattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCGTT-GGT-GGGTATCATACCATGTG--TAAGCGGCTTGATGC---AGTGT-GGTAACGCT-CAGA-ATACTGTCTCAAGTAGACACC----GTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAA-CAAC---AAACACATTA-TCTG--GTcagagtcaaaagaaactgacttgtcattgcccttttgagcggaagatatgaattcgttgaattttcttgtttaa
gi|7 : accagagacGCTCGGTGTATGAATTCTGCAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA----T-C--A-ATATTGT---AAGTAA--ATTTAGAG--GTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-T-AC---AAacaatta
gi|8 : aAGA-AAACTATC-CAAGCAG--GCC----A----GA-TT---TGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-T-AC----AATACA--A-TTTA--GTTG-CTTCCA-AACCTTGTT
gi|9 : tatgtcagctgtgtCTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC-CTACATATGTATTGTCTTGAATAG--
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 33333333333333333 222222222 1111 1 88888888888888888888888888888888888888 11 1111 22 2 1 22222222 1 2222222222 1 11 1 1 11 1 1 111 1 111 22 1 1 11 111 111 11 11 11 33333 1 1 222 2222 222 1 1 1 22222 33333333333 11 11 33333333 1 11 333333333
lowQualScore : 1 1 88888888888888888 77 5 1 0 1 777777777 4444 11 6 1 6 55 99999999999999999999999999999999999999 0 1 2 1 1 3 11 3333 0 1 0 1 99 88888 55 0 1 0 8 44444444 3 0 0 8888888888 0 11 1 1 1 0 7 1 1 1 1 5 1 1 0 1 3 3 2 1 0 33 55 2 2 0 77 222 0 0 8 5 222 3 6 77 2 4 0 0 0 33 00 000 444 00 33 66 3 77777 0 1 5 1 111 1 1 4444 111 2 2 1 5 1 5 5 55555 00000000000 1 1 1 1 77 22 77 55555555 1 1 1 1 1 1 5 88 888888888 1 1 1
lowQualScore : . . ................. .. . . . . ......... .... .. . . . .. ...................................... . . . . . . .. .... . . . . .. ..... .. . . . . ........ . . . .......... . .. . . . . . . . . . . . . . . . . . . . .. .. . . . .. ... . . . . ... . . .. . . . . . .. .. ... ... .. .. .. . ..... . . . . ... . . .... ... . . . . . . . ..... ........... . . . . .. .. .. ........ . . . . . . . .. ......... . . .
lowQualScore : 0 0 99999999999999999 99 7 4 7 7 777777777 4444 66 3 0 7 22 22222222222222222222222222222222222222 2 2 5 2 2 2 00 8888 8 2 8 0 00 66666 77 0 0 0 0 22222222 2 2 0 2222222222 0 22 0 2 0 7 3 0 0 0 0 0 0 0 7 0 3 2 5 0 2 88 22 5 8 0 88 000 0 8 0 6 555 5 5 00 5 5 0 2 0 88 55 000 000 55 22 55 0 00000 0 0 5 0 000 0 0 5555 000 5 5 0 5 0 0 5 00000 55555555555 0 0 0 0 55 00 55 55555555 0 0 0 0 0 0 0 00 555555555 0 0 0
consensus : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCC--------GC-----------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
Reference ( family-2675 ) : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATATGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCC-------CGC-----------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAT-TGAGGG-TGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTTG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
gi|1 : TGAATGTCTGACTACACAGTTACGCCC-------C---T----TTCTTG--ACACGGT-TACATGATTATTGCGCTG---T--G-TAA-GT-CCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTT-TAAACAAT-G--TTTTATAGGATTTAAACTGATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGGGGTGTCACAACACTGATTTT-AAA-AAAAT---CTCAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAAACCACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACGTTC-AGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATG-TGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGCGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACT-AC---AACTACAACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATG---ATTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATAC
gi|11 : CTTACAACATAGGTGTGCC------------T----TTTTTG--TCACTGT-GACAAG---CCTGCTCTT---C--A-AAA-AT-ACCAT-TGTTATTTGATT-TGAAA-ATTTTCAAAATaatgaaattcgcaataagaggatatatgtgattataattttttaagtgaatttgcatgatgttcttgtttgaaatatnnnnnnnnnntttagtcccggcgaggtacatcggtagtgggtgacagaccctttaccagtgacgtattaa
gi|12 : TGCACGTCTAATTACAAAGTTACGTCC-------T---T----CATTAA--TTACGATTAG--AACTTCTTTCGCTA---T--GTAAA----CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAATtttgattgaacaaaga
gi|13 : tgcACACAGTTATGCCCTCTCCCCC---TCCCATCTTTGAGCCACGGT-AGCATGATTATTACCCAA---CTAA-AAA-GTACC---GTGTTATTCG
gi|16 : AA-AAATCTGAC--AAGCTGGTCAACCCATCATTTATTATACATTTTttggctaaa
gi|17 : TTTTATATAGAACAAAGATCAAAATTCAACTGTG
gi|2 : TCTCACTACACTGTTGTGCCA-------C---T----TTTTTG--TCATGGT-AGCAACACTGTTGCACTTAACT--G-AAA-GT-CCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGA---------------------------TTTCTTGCTACAGATGAGTAAAGCAAAAGCTGGCAAAGCATATACTGCAATAATACATCACTGGTG-T-CAAAAAGT-AACTTCTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGG
gi|2 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaaga-AAATAAAAC---C--AATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTATGG-ATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAAAAGATTCTATGTGGAA--AATATTTTAcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|3 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaGTCTCACTACACAGTTACGCCC-------CCTTT----TTTTTG--CCACGGT-AGCAAGATTCTTACGCTT---A--A-AAAAGG-CCTAT--GTTCTTTGGTTATAAAGCATTT-CAAAATGGTTCATAG----------TGGTT----------GT-----------GATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAGT-GACTTTTATAGGATTTCACGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTT-----TCAAAAAATC-TCAGGG-TGTCACTGCACCCTCTTTAAAA-AAAAG---C--AAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTGGGA-ACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAAAAAAATATACGTTGAATTCTTATTTTAaagattaattaaatacaaaga
gi|3 : AA-T-ACTTAAAAAAAAA-TATA-CGTTG------A-ATTCTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAATtatagaacaaagaacaaaattcaactgtgtaat
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaCTCACTACACAGGTGTGCCC----------------TTTTTG--TCACGGT-AGCAAAATTCTTGCACTG---A--A-AAATGT-CCTAT--GTAATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCC---------------------GGTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAGTTGTATAGGATTTTAACAGGTGAATGTACTTATAAGCATTTGAGGACATCGTCTTT
gi|4 : CATCGTCTTT-AAA-CAA-----C--AAGCTTGTCAGCCTATCAGTTATTGTGCATTTT-ATATGCGG-ATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|5 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggaAGAACAAGA-GAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACtattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCG--TTGGT-GGGTATCATACCATGTG--TAAGCGGCTTGATG---CAGTGT-GGTAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAA-CAAC---AAACACA---TTA-TCTGG---TACA-Acagagtcaaaagaaactgacttgtcattgcccttttgagcggaagatatgaattcgttgaattttcttgtttaa
gi|7 : accagagacGCTCGGTGTATGAATTCTG-CAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA----T-C--A-ATATTGT---AAGTAAATTTAGAGGTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-T-AC---AAtta
gi|8 : aAGA-AAACTATC-CAAGCAGGC-----CA-GA-TT---TGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-T-AC---AA-TACAA-TTTA--GTTGCT-TCCA-AACCTTGTT
gi|9 : tatgtcagctgtgtACTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC-CTACATATGTATTGTCTTGAATAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 33333333333333333 222222222 1111 1 7777777777777777777777777777777777777777 11 1111 22 1 22222222 1 2222222222 1 11 1 1 11 1 1 111 1 111 22 1 1 11 111 111 11 11 11 33333 1 1 222 2222 222 1 1 1 22222 33333333333 11 11 33333333 1 11 333333333
lowQualScore : 1 1 88888888888888888 77 5 1 0 1 777777777 4444 11 1 1 1 6 55 4444444444444444444444444444444444444444 1 2 1 1 3 11 3333 0 1 0 1 99 88888 55 6 1 0 8 44444444 3 0 0 8888888888 0 11 1 1 1 0 7 1 1 1 1 5 1 1 0 1 3 3 2 1 0 33 55 2 2 0 77 222 0 0 8 5 222 3 6 77 2 4 0 0 0 33 00 000 444 00 33 66 1 77777 0 1 5 1 111 1 1 4444 111 2 2 1 5 1 5 5 55555 00000000000 1 1 1 1 77 22 77 55555555 1 1 1 1 1 1 5 88 888888888 1 1 1
lowQualScore : . . ................. .. . . . . ......... .... .. . . . . .. ........................................ . . . . . .. .... . . . . .. ..... .. . . . . ........ . . . .......... . .. . . . . . . . . . . . . . . . . . . . .. .. . . . .. ... . . . . ... . . .. . . . . . .. .. ... ... .. .. .. . ..... . . . . ... . . .... ... . . . . . . . ..... ........... . . . . .. .. .. ........ . . . . . . . .. ......... . . .
lowQualScore : 0 0 99999999999999999 99 7 4 7 7 777777777 4444 66 7 4 0 7 22 5555555555555555555555555555555555555555 2 5 2 2 2 00 8888 8 2 8 0 00 66666 33 7 0 0 0 22222222 2 2 0 2222222222 0 22 0 2 0 7 3 0 0 0 0 0 0 0 7 0 3 2 5 0 2 88 22 5 8 0 88 000 0 8 0 6 555 5 5 00 5 5 0 2 0 88 55 000 000 55 22 55 0 00000 0 0 5 0 000 0 0 5555 000 5 5 0 5 0 0 5 00000 55555555555 0 0 0 0 55 00 55 55555555 0 0 0 0 0 0 0 00 555555555 0 0 0
consensus : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
Reference ( family-2675 ) : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
gi|1 : TGAATGTCTGACTACACAGTTACGCCC-------C---T----TTCTTG--ACACGGT-TACATGATTATTGCGCTG---T--G-TAA-GT-CCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTT-TAAACAAT-G--TTTTATAGGATTTAAACTGATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGGGGTGTCACAACACTGATTTT-AAA-AAAAT---CTCAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAAACCACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACGTTC-AGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATG-TGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGCGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACT-AC---AACTACAACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATG---ATTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATAC
gi|11 : CTTACAACATAGGTGTGCC------------T----TTTTTG--TCACTGT-GACAAG---CCTGCTCTT---C--A-AAA-AT-ACCAT-TGTTATTTGATT-TGAAA-ATTTTCAAAATaatgaaattcgcaataagaggatatatgtgattataattttttaagtgaatttgcatgatgttcttgtttgaaatatnnnnnnnnnntttagtcccggcgaggtacatcggtagtgggtgacagaccctttaccagtgacgtattaa
gi|12 : TGCACGTCTAATTACAAAGTTACGTCC-------T---T----CATTAA--TTACGATTAG--AACTTCTTTCGCTA---T--GTAAA----CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAATtttgattgaacaaaga
gi|13 : tgcACACAGTTATGCCCTCTCCCCC---TCCCATCTTTGAGCCACGGT-AGCATGATTATTACCCAA---CTAA-AAA-GTACC---GTGTTATTCG
gi|16 : AA-AAATCTGAC--AAGCTGGTCAACCCATCATTTATTATACATTTTttggctaaa
gi|17 : TTTTATATAGAACAAAGATCAAAATTCAACTGTG
gi|2 : TCTCACTACACTGTTGTGCCA-------C---T----TTTTTG--TCATGGT-AGCAACACTGTTGCACTTAACT--G-AAA-GT-CCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGA---------------------------TTTCTTGCTACAGATGAGTAAAGCAAAAGCTGGCAAAGCATATACTGCAATAATACATCACTGGTG-T-CAAAAAGT-AACTTCTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGG
gi|2 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaaga-AAATAAAAC---C--AATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTATGG-ATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAAAAGATTCTATGTGGAA--AATATTTTAcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|3 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaGTCTCACTACACAGTTACGCCC-------CCTTT----TTTTTG--CCACGGT-AGCAAGATTCTTACGCTT---A--A-AAAAGG-CCTATGT-TC-TTTGGTTATAAAGCATTT-CAAAATGGTTCATAG----------TGGTT--GT-------------------GATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAGT-GACTTTTATAGGATTTCACGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTT-----TCAAAAAATC-TCA-GGGTGTCACTGCACCCTCTTTAAAA-AAAAG---C--AAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTGGGA-ACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAAAAAAATATACGTTGAATTCTTATTTTAaagattaattaaatacaaaga
gi|3 : AA-T-ACTTAAAAAAAAA-TATA-CGTTG------A-ATTCTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAATtatagaacaaagaacaaaattcaactgtgtaat
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaCTCACTACACAGGTGTGCCC----------------TTTTTG--TCACGGT-AGCAAAATTCTTGCACTG---A--A-AAATGT-CCTATGT--AATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCCG---------------------GTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAGTTGTATAGGATTTTAACAGGTGAATGTACTTATAAGCATTTGAGGACATCGTCTTT
gi|4 : CATCGTCTTT-AAA-CAA-----C--AAGCTTGTCAGCCTATCAGTTATTGTGCATTTT-ATATGCGG-ATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|5 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggaAGAACAAGA-GAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACtattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCG--TTGGT-GGGTATCATACCATGTG--TAAGCGGCTTGATG---CAGTGT-GGTAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAA-CAAC---AAACACA---TTA-TCTGG---TACA-Acagagtcaaaagaaactgacttgtcattgcccttttgagcggaagatatgaattcgttgaattttcttgtttaa
gi|7 : accagagacGCTCGGTGTATGAATTCTG-CAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA----T-C--A-ATATTGT---AAGTAAATTTAGAGGTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-T-AC---AAtta
gi|8 : aAGA-AAACTATC-CAAGCAGGC-----CA-GA-TT---TGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-T-AC---AA-TACAA-TTTA--GTTGCT-TCCA-AACCTTGTT
gi|9 : tatgtcagctgtgtACTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC-CTACATATGTATTGTCTTGAATAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 33333333333333333 222222222 1111 1 7777777777777777777777777777777777777777 11 1111 22 1 22222222 1 2222222222 1 11 1 1 11 1 1 111 1 111 22 1 1 11 111 111 11 11 11 33333 1 1 222 2222 222 1 1 1 22222 33333333333 11 11 33333333 1 11 333333333
lowQualScore : 1 1 88888888888888888 77 5 1 0 1 777777777 4444 11 1 1 1 6 55 4444444444444444444444444444444444444444 1 2 1 1 3 11 3333 0 1 0 1 99 88888 55 6 1 0 8 44444444 3 0 0 8888888888 0 11 1 1 1 0 7 1 1 1 1 5 1 1 0 1 3 3 2 1 0 33 55 2 2 0 77 222 0 0 8 5 222 3 6 77 2 4 0 0 0 33 00 000 444 00 33 66 1 77777 0 1 5 1 111 1 1 4444 111 2 2 1 5 1 5 5 55555 00000000000 1 1 1 1 77 22 77 55555555 1 1 1 1 1 1 5 88 888888888 1 1 1
lowQualScore : . . ................. .. . . . . ......... .... .. . . . . .. ........................................ . . . . . .. .... . . . . .. ..... .. . . . . ........ . . . .......... . .. . . . . . . . . . . . . . . . . . . . .. .. . . . .. ... . . . . ... . . .. . . . . . .. .. ... ... .. .. .. . ..... . . . . ... . . .... ... . . . . . . . ..... ........... . . . . .. .. .. ........ . . . . . . . .. ......... . . .
lowQualScore : 0 0 99999999999999999 99 7 4 7 7 777777777 4444 66 7 4 0 7 22 5555555555555555555555555555555555555555 2 5 2 2 2 00 8888 8 2 8 0 00 66666 33 7 0 0 0 22222222 2 2 0 2222222222 0 22 0 2 0 7 3 0 0 0 0 0 0 0 7 0 3 2 5 0 2 88 22 5 8 0 88 000 0 8 0 6 555 5 5 00 5 5 0 2 0 88 55 000 000 55 22 55 0 00000 0 0 5 0 000 0 0 5555 000 5 5 0 5 0 0 5 00000 55555555555 0 0 0 0 55 00 55 55555555 0 0 0 0 0 0 0 00 555555555 0 0 0
consensus : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
Reference ( family-2675 ) : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
gi|1 : TGAATGTCTGACTACACAGTTACGCCC-------C---T----TTCTTG--ACACGGT-TACATGATTATTGCGCTG---T--G-TAA-GT-CCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTT-TAAACAAT-G--TTTTATAGGATTTAAACTGATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGGGGTGTCACAACACTGATTTT-AAA-AAAAT---CTCAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAAACCACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACGTTC-AGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATG-TGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGCGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACT-AC---AACTACAACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATG---ATTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATAC
gi|11 : CTTACAACATAGGTGTGCC------------T----TTTTTG--TCACTGT-GACAAG---CCTGCTCTT---C--A-AAA-AT-ACCAT-TGTTATTTGATT-TGAAA-ATTTTCAAAATaatgaaattcgcaataagaggatatatgtgattataattttttaagtgaatttgcatgatgttcttgtttgaaatatnnnnnnnnnntttagtcccggcgaggtacatcggtagtgggtgacagaccctttaccagtgacgtattaa
gi|12 : TGCACGTCTAATTACAAAGTTACGTCC-------T---T----CATTAA--TTACGATTAG--AACTTCTTTCGCTA---T--GTAAA----CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAATtttgattgaacaaaga
gi|13 : tgcACACAGTTATGCCCTCTCCCCC---TCCCATCTTTGAGCCACGGT-AGCATGATTATTACCCAA---CTAA-AAA-GTACC---GTGTTATTCG
gi|16 : AA-AAATCTGAC--AAGCTGGTCAACCCATCATTTATTATACATTTTttggctaaa
gi|17 : TTTTATATAGAACAAAGATCAAAATTCAACTGTG
gi|2 : TCTCACTACACTGTTGTGCCA-------C---T----TTTTTG--TCATGGT-AGCAACACTGTTGCACTTAACT--G-AAA-GT-CCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGA---------------------------TTTCTTGCTACAGATGAGTAAAGCAAAAGCTGGCAAAGCATATACTGCAATAATACATCACTGGTG-T-CAAAAAGT-AACTTCTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGG
gi|2 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaaga-AAATAAAAC---C--AATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTATGG-ATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAAAAGATTCTATGTGGAA--AATATTTTAcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|3 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaGTCTCACTACACAGTTACGCCC-------CCTTT----TTTTTG--CCACGGT-AGCAAGATTCTTACGCTT---A--A-AAAAGG-CCTATGT-TC-TTTGGTTATAAAGCATTT-CAAAATGGTTCATAG----------TGGTT--GT-------------------GATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAGT-GACTTTTATAGGATTTCACGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTT-----TCAAAAAATC-TCA-GGGTGTCACTGCACCCTCTTTAAAA-AAAAG---C--AAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTGGGA-ACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAAAAAAATATACGTTGAATTCTTATTTTAaagattaattaaatacaaaga
gi|3 : AA-T-ACTTAAAAAAAAA-TATA-CGTTG------A-ATTCTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAATtatagaacaaagaacaaaattcaactgtgtaat
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaCTCACTACACAGGTGTGCCC----------------TTTTTG--TCACGGT-AGCAAAATTCTTGCACTG---A--A-AAATGT-CCTATGT--AATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCCG---------------------GTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAGTTGTATAGGATTTTAACAGGTGAATGTACTTATAAGCATTTGAGGACATCGTCTTT
gi|4 : CATCGTCTTT-AAA-CAA-----C--AAGCTTGTCAGCCTATCAGTTATTGTGCATTTT-ATATGCGG-ATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|5 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggaAGAACAAGA-GAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACtattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCG--TTGGT-GGGTATCATACCATGTG--TAAGCGGCTTGATG---CAGTGT-GGTAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAA-CAAC---AAACACA---TTA-TCTGG---TACA-Acagagtcaaaagaaactgacttgtcattgcccttttgagcggaagatatgaattcgttgaattttcttgtttaa
gi|7 : accagagacGCTCGGTGTATGAATTCTG-CAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA----T-C--A-ATATTGT---AAGTAAATTTAGAGGTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-T-AC---AAtta
gi|8 : aAGA-AAACTATC-CAAGCAGGC-----CA-GA-TT---TGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-T-AC---AA-TACAA-TTTA--GTTGCT-TCCA-AACCTTGTT
gi|9 : tatgtcagctgtgtACTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC-CTACATATGTATTGTCTTGAATAG
blockSeqs : C T CTCTCCCCCTCCCA AG T C T TAACTG GTA CA G G T A TT TGCCTGTGA G G A A T AA TAAG T C CG TTCTG C G T A T TCTGAC T . AAAAAAA G TA G T C T T A C A C T T T T A G A CA TT C T C GT ACG A T T ACC T C TT G A T T CC CA TTA AA A C T CTTC . C . G . A C . AGT G C T A A G . CCCCC CAGAGAGT T T A G . AA CG . G T T T G T . AG . A A A
blockSeqs : A CCCTTT . . A G ACTAA AGG TA G G T . AT TGGTTGTGA A G A A T C AAC C C CA . . . . . ACC T . AAAAT . A A A A . C . A G T . AT C . . AT AC . . T TTA A T GC G T . . . T . AC A T G TA .
blockSeqs : C CTT . . A C ATGT TGT TA A G T . GC AAGCTCCGG T . G G . G GAC T A . . . AGC . . GA . T C T . . T . GA . . . . . . . . . . . T . . . . . T . T . . T . .
blockSeqs : C ACT . . A A TCA AT TA G . A . AT . C . . T .
blockSeqs : C T . . A G TAA GT T G . C . A
blockSeqs : C . . . A GAA . . . . A
blockSeqCons : CTT************** GT** C******* T**
originalCons : TGNACGTCTCACTACACAGTTGCGCCC-------C---T----TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAAC---C--AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
finalCons : TGNACGTCTCACTACACAGTTGCGCCCTT--------------TTTTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAAGT--CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTT-AAA-AAAC-------AAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAAT--AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1111 22222222222 222222222 1111 1 7777777777777777777777777777777777777777 11 1111 22 444444444 1 2222222222 1 11 1 1 11 1 1 111 1 111 22 1 1 11 111 111 11 11 11 33333 1 1 222 2222 222 1 1 1 22222 33333333333 11 11 33333333 1 11 333333333
lowQualScore : 1 1 0000 77777777777 77 5 1 0 1 777777777 4444 11 1 1 1 6 55 4444444444444444444444444444444444444444 1 2 1 1 3 11 3333 0 1 0 1 99 88888 55 6 1 333333333 0 0 0 8888888888 0 11 1 1 1 0 7 1 1 1 1 5 1 1 0 1 3 3 2 1 0 33 55 2 2 0 77 222 0 0 8 5 222 3 6 77 2 4 0 0 0 33 00 000 444 00 33 66 1 77777 0 1 5 1 111 1 1 4444 111 2 2 1 5 1 5 5 55555 00000000000 1 1 1 1 77 22 77 55555555 1 1 1 1 1 1 5 88 888888888 1 1 1
lowQualScore : . . .... ........... .. . . . . ......... .... .. . . . . .. ........................................ . . . . . .. .... . . . . .. ..... .. . . ......... . . . .......... . .. . . . . . . . . . . . . . . . . . . . .. .. . . . .. ... . . . . ... . . .. . . . . . .. .. ... ... .. .. .. . ..... . . . . ... . . .... ... . . . . . . . ..... ........... . . . . .. .. .. ........ . . . . . . . .. ......... . . .
lowQualScore : 0 0 7777 11111111111 99 7 4 7 7 777777777 4444 66 7 4 0 7 22 5555555555555555555555555555555555555555 2 5 2 2 2 00 8888 8 2 8 0 00 66666 33 7 0 888888888 8 2 0 2222222222 0 22 0 2 0 7 3 0 0 0 0 0 0 0 7 0 3 2 5 0 2 88 22 5 8 0 88 000 0 8 0 6 555 5 5 00 5 5 0 2 0 88 55 000 000 55 22 55 0 00000 0 0 5 0 000 0 0 5555 000 5 5 0 5 0 0 5 00000 55555555555 0 0 0 0 55 00 55 55555555 0 0 0 0 0 0 0 00 555555555 0 0 0
consensus : TGNACGTCTCACTACACAGTTGCGCCC---TTTT-----------TTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTTAAAAA----AA---CAAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
Reference ( family-2675 ) : TGNACGTCTCACTACACAGTTGCGCCC---TTTT-----------TTTG--TCACGGT-AGCAAGATTCTTGCGCTN---C--G-AAA-GT-CCTATGTGTNATTTGGTT-TGAANTATTTTCAAAATGGTTCATAGG---TGCCCGCGGCTCCGC-------------------GGTTTCTTGCTGCAGATGAGTAGAGCAAAAACTGGCATAGCATATACTGCAATAAGACATCACTGGTGTT-NAAAAAGT-GACTTTTATAGGATTTTAACAGATGNATGTATTTATGAGCATTTGAGGACGTCTTTTTTTCTGTCAAAAAAAC-TGAGGGGTGTCACNGCACCGTCTTTAAAAA----A----CAAGCTGGTCAACCTACCAGTTATTGTGCATTTTTATGTGCGG-ATACATTTCTGCTATG-----AA---AAACA-CTTT-AAAAANATTNTACGTGGAATTATTATTTTACCGTGGACCCTGGCTGGATCATACCAATACTTCAAAANTGGNACTAGANGCTTCCTCGCTTGGNGCCCCAGCATTTAGAGGANAGTTCTAGGCCTNGTCGGCCCGGCGTAAGAATANTG-CGACTGGGTGGGGTNTCATGCAATGTG--TATGCGGCGNGATACTCCAGTGT-GATAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA-TTGANTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAA-T-AC---AAATACAA-TTTA-CGTNG---TCCA-AACCTTGTTTTATATAGAACAAAGAACAAAATTCAACTGTGTAGTGAGACCGGTGGACAATTTGAAAGAANAAGAAGAAAAACACNTACATTGNAANATATTTTCCATGAGTATTCGCGAGTNTATNGTGATAGTACAATCGGCCCCCAGGATACCCAGAGAGTCNTGGGTTCGATCCTCCGCCNCGGCTATGCGTGGTGTCNTNGAACAAGGCACCTTTNNTTCGCATATGCTTATATGACATGTACTNGNTCTACCCAGGNAGACNCCNAGCGNGATTTGTCTAGAAGTTGCCATAACTTGTTCNCAGCCGAAGTAANACAAATANGTTCAATACAC
gi|1 : TGAATGTCTGACTACACAGTTACGCCC---CTTT-----------CTTG--ACACGGT-TACATGATTATTGCGCTG---T--G-TAA-GT-CCTATATGTAAATGGGTT-TGAATCATTTTCAAAATGGTTCATAGGCCCTACCCACAGCTCCACAGCCCCACAGCTGGGCTGGGGTTTCATGCTACAGATGAGTAGAGCAAATACTGGCATAGCATATTCTGCGATAAGTCAGCACTGGTGTT-TAAACAAT-G--TTTTATAGGATTTAAACTGATGGATGTATTCATGAGCAATTGAGGACTTCTTTTTTTTTATTAAAAAAATATGAGGGGTGTCACAACACTGATTTTAAAAA----AATCTCAAGCTGGTCAACCTGCCAGTTATTGTGCATTTTTATATGCGGGATACATTCCTTCTATG-----AA---AAACA-CTTC-AAAACCACTGTATGTGGAATTATTCTTTTACCGTGGACCCTGGCTGGATCATACCAATACTTTAAAAATGGTACTAGAAGCTTCCTCGCTTGACGTTC-AGCATTTAGAGGAAAGTTCTAGGTCTGGTCGGCCCGGTGTAAGTATAATG-TGACTGGGTGGGGTATCATGCAATGTG--TATGCGGCAAGATACTCCAGTGT-GACAGCGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGA--TGACTGAAA-AGT-GTT--GAAAGCGACGCTAAACACCATACAACT-AC---AACTACAACTTTACCGTGGAAATCCACGACCTTGTTTTATATAGAACAAAGAACAAAGATCAACTGTTTAGTGAGACCGGTGGACAATTTGAAAAAAAAAGAAGAAAAATACCTACATTGTAAAATATTTTTCATG---ATTCGCGAGTAT-TCGTGATA-TACAATCGG-----AGGATACCCA------CGTGGGTTCGATCCTCCACCACGGCTATGTGTGGTGTCCTCGAACAAGGCACCTTTTCTT--TATATGCTTATATGACATGTACTTGGTCTACCCAGGAAGACGTCTAGTGGGATTTGTCT--AAGTTATCATAACTTGTTCTCAGCCGAAGTAATACAAATATGTTTAATATAC
gi|11 : CTTACAACATAGGTGTGCC-----TTT-----------TTTG--TCACTGT-GACAAG---CCTGCTCTT---C--A-AAA-AT-ACCAT-TGTTATTTGATT-TGAAA-ATTTTCAAAATaatgaaattcgcaataagaggatatatgtgattataattttttaagtgaatttgcatgatgttcttgtttgaaatatnnnnnnnnnntttagtcccggcgaggtacatcggtagtgggtgacagaccctttaccagtgacgtattaa
gi|12 : TGCACGTCTAATTACAAAGTTACGTCC---TTCA-----------TTAA--TTACGATTAG--AACTTCTTTCGCTA---T--GTAAA----CCT-TGTGTTATTTGGTT-TGATTTATTTTCGAAATtttgattgaacaaaga
gi|13 : tgcACACAGTTATGCCC---TCTCCCCCTCCCATCTTTGAGCCACGGT-AGCATGATTATTACCCAA---CTAA-AAA-GTACC---GTGTTATTCG
gi|16 : AAAAATCTGA----CAAGCTGGTCAACCCATCATTTATTATACATTTTttggctaaa
gi|17 : TTTTATATAGAACAAAGATCAAAATTCAACTGTG
gi|2 : TCTCACTACACTGTTGTGCCA---CTTT-----------TTTG--TCATGGT-AGCAACACTGTTGCACTTAACT--G-AAA-GT-CCTATAT--AATTTGGTT-TGAAATATTTTCAAAATGGTTCATAG----TGCCTGTGA---------------------------TTTCTTGCTACAGATGAGTAAAGCAAAAGCTGGCAAAGCATATACTGCAATAATACATCACTGGTG-T-CAAAAAGT-AACTTCTATAGGATTTTAGCAGATGCATGTATTTATGAGCATTTGAGGA----TTTTTTTCTGTCACAACAA---GAGG
gi|2 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagaAAAA----C----CAATCTTGTCAACCTACCAGTTATTGTGCATTTTTATGTATGG-ATGCTTTTCTGCTATG-----AAAATAAATA-CTTTAAAAAAGATTCTATGTGGAA--AATATTTTAcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaataaaaccaatcttgtcaacctaccagttattgtgcatttttatgtatggatgcttttctgctatgaaaataaatactttaaaaaagattctatgtggaaaatattttaaagattaattaaatacaaaga
gi|3 : tttaatcatacattttcttattacatagacaagtgacaaggacagtcagttaagatctcactacactgttgtgccacttttttgtcatggtagcaacactgttgcacttaactgaaagtcctatataatttggtttgaaatattttcaaaatggttcatagtgcctgtgatttcttgctacagatgagtaaagcaaaagctggcaaagcatatactgcaataatacatcactggtgtcaaaaagtaacttctataggattttagcagatgcatgtatttatgagcatttgaggatttttttctgtcacaacaagaggcccatgtgccataacgttcacgtgattacccatgatgacttaaagctatatgaatctatgatctaccctaagacctcattagggtggggactatgaacttcacttggtataaaccgtcatgtcagcaacaacaaatcacaccaagaaacattcacataagtctattcagtcatgagaaataacatttttttgtcaatatctcttatatagatttagtaatgtaaaccccacccacagggccaaaccgtgagacccagtggcatgcaatttacaattattataaggtcctataagtgtcgatattcatggtaactatttgtttcccagtgcttccgatagtaggaagaagattgactgctttggccccgctcccaagacccaagtggggtgaggaccatgcgattcacaatttttattcacttttaggcaccaaagctgcataaatttcattacaattgagcttacagtttttgagaagaagtcgaaaatgtcaatggacgcacaacagatgatgcacgacgagggataaaaggcgatcacaaaaggtcccatgagacaaagtctcaggtgacctaaaaatGTCTCACTACACAGTTACGCCCCCTTTTT-----------TTTG--CCACGGT-AGCAAGATTCTTACGCTT---A--A-AAAAGG-CCTATGT-TC-TTTGGTTATAAAGCATTT-CAAAATGGTTCATAG----------TGGTT--GT-------------------GATTTCTTGCTGCAGATGAGTAGAGCAAAAATTGGTATAACATATACTGCAATAAGACATTACTGGTGTTAAAAAAAGT-GACTTTTATAGGATTTCACGATATGCATGTATTTATGAGCATTTGAGGACGTCTTTTT-----TCAAAAAATC-TCA-GGGTGTCACTGCACCCTCTTTAAAAA----AAAG-CAAGCTGGTAAACCAACCAGTTATTGTGCGTTTTTATGTGGGA-ACACATTTCTGCTATGAAAAAAA---AAATA-CTTA-AAAAAAAATATACGTTGAATTCTTATTTTAaagattaattaaatacaaaga
gi|3 : AA-T-ACTTAAAAAAAAA-TATA-CGTTG------A-ATTCTTATTTTATATAGAACAAAGAACAAAATTCAACTGTGTAATtatagaacaaagaacaaaattcaactgtgtaat
gi|4 : gtctcactacacagttacgcccccttttttttgccacggtagcaagattcttacgcttaaaaaaggcctatgttctttggttataaagcatttcaaaatggttcatagtggttgtgatttcttgctgcagatgagtagagcaaaaattggtataacatatactgcaataagacattactggtgttaaaaaaagtgacttttataggatttcacgatatgcatgtatttatgagcatttgaggacgtcttttttcaaaaaatctcagggtgtcactgcaccctctttaaaaaaaagcaagctggtaaaccaaccagttattgtgcgtttttatgtgggaacacatttctgctatgaaaaaaaaCTCACTACACAGGTGTGCCC---TTTT-----------T--G--TCACGGT-AGCAAAATTCTTGCACTG---A--A-AAATGT-CCTATGT--AATTTAGGT-TGAAATATTTTCAAAATGATTCATAGA----------AGCTCCG---------------------GTTTCTTGCTGCAGATCAATAAAGCAAAATCTG-CATAGCATTTGCTGCAATGAGGCATCACCGGTGTT-GAACAAGTTAAGTTGTATAGGATTTTAACAGGTGAATGTACTTATAAGCATTTGAGGACATCGTCTTT
gi|4 : CATCGTCTTTAAACA----A----CAAGCTTGTCAGCCTATCAGTTATTGTGCA-TTTTATATGCGG-ATACATCTCTGCTATG-----GA---AAGCAGTTTT-AAATACATTaaacaacaagcttgtcagcctatcagttattgtgcattttatatgcggatacatctctgctatggaaagcagttttaaatacatttattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|5 : ctcactacacaggtgtgccctttttgtcacggtagcaaaattcttgcactgaaaaatgtcctatgtaatttaggttgaaatattttcaaaatgattcatagaagctccggtttcttgctgcagatcaataaagcaaaatctgcatagcatttgctgcaatgaggcatcaccggtgttgaacaagttaagttgtataggattttaacaggtgaatgtacttataagcatttgaggaAGAACAAGA-GAAAAACACGTA---TGAAACATA----CCATAAGTATTGATCAGTTTATAGTGATAGTACA-TCGGCCCCCAGGAT---CAGAGAGTCTTGGGTTCGATCCTCCGTCTCAGCTATACGTGATGTCATGGAACAAGACA--TTTAATTCGCATATGCTTA--------ATACTGGTTCTACCCAGATAAACTCCGAGCGTGATTT-TTTAGAAGTTGCC---------TCACAATTGAAGTAAAACAAATAAGTTCAATACACtattgtatattatatccgaaagcaatatgatagtttataaaagtttatactattaatcattaacaaacac
gi|6 : CTTCAAAATTGGAACTAGACGCTTCCTCGTTTGGAGCCCCAGCATTTAGAAAATAGTTCTAGGCCTTGTCGGCCCGTCGTCAGAATATTGTCG--TTGGT-GGGTATCATACCATGTG--TAAGCGGCTTGATG---CAGTGT-GGTAACGCT-CAGA-ATACTGTCTCAAGTAGACACCGTCGCGATTTGAATGAAATATT-GTT--GAAAGCAACGCTAAACACCATACAA-CAAC---AAACACA---TTA-TCTGG---TACA-Acagagtcaaaagaaactgacttgtcattgcccttttgagcggaagatatgaattcgttgaattttcttgtttaa
gi|7 : accagagacGCTCGGTGTATGAATTCTG-CAACTGGGTGGGGTTGTATTGAATGTGCACATATAGTATTATACT----TGTCGATA----T-C--A-ATATTGT---AAGTAAATTTAGAGGTGAGCTGATTGAAA-CAT-TTTCCAAAAACGACTATAAACACCGTACAG-T-AC---AAtta
gi|8 : aAGA-AAACTATC-CAAGCAGGC-----CA-GA-TT---TGAAA-AGTTGTC--AAAAGAGACATTAAACACCATTTAA-T-AC---AA-TACAA-TTTA--GTTGCT-TCCA-AACCTTGTT
gi|9 : tatgtcagctgtgtACTGGGTGAAGTTTTAGGCAGTGTG--TCTATGGTGAGATACTTCAGTGT-G--AAC-CTACATATGTATTGTCTTGAATAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATTATAATGTTATCCTATAAATCAAGCTGTTTTGTGTTTTTTTTGTGATATATCCTTCTGTAATACGGCTTTTTTTTGCACAGGAAGTGACGTATAATTTTTCTCTA
Unaligned ( gi|14 ): ACATGTTTAACATAATATTCAAAATTTTCAGTCATAGTAAGCGACCATT
Unaligned ( gi|15 ): TTTTCTTTTATTACGTGTAACACAAATGCGACGTTGGTTGAGCCGG
Unaligned ( gi|18 ): CTGAACCATTGTTATAAAAGTGAATAAAAATAC