lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222 555555555555555 11 3333333 1111 3333333333333 666666666666666666666666666666 444444444444 44444444 11 11 1 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11
lowQualScore : 6 3 1 2 000 3333333 8888888 2 0 5555 33 444 0 0 555 3 1 3 3 555 444444444444444 1 88 77 2 0 2 2 55 1 2 0000000 444 7777 2 2 5 8888888888888 2 2 555 2 111111111111111111111111111111 0 77 66666 88888888 333333333333 3 3 4 3 2 00000000 44 33 77 2 5 5 99 6666 4 555 00 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 777777 0 55555 333 4444 333 55555 11 2 55 444 5 2
lowQualScore : . . . . ... ....... ....... . . .... .. ... . . ... . . . . ... ............... . .. .. . . . . .. . . ....... ... .... . . . ............. . . ... . .............................. . .. ..... ........ ............ . . . . . ........ .. .. .. . . . .. .... . ... .. ......................................................................................................................................... ...... . ..... ... .... ... ..... .. . .. ... . .
lowQualScore : 2 1 4 9 111 4444444 7777777 7 3 7777 77 777 7 5 444 7 4 1 3 888 999999999999999 1 99 99 9 7 7 7 55 5 5 8888888 000 0000 9 9 3 0000000000000 4 9 000 9 222222222222222222222222222222 9 99 00000 22222222 333333333333 0 1 4 1 0 55555555 77 66 55 9 0 7 11 5555 2 888 99 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222 6 66666 999 7777 999 66666 44 7 66 111 0 0
consensus : ATNATT-TACGGTGCA-GGAGTGTAATAAACCCATGAC------ATATTTT-------T-TATATTAACC----TAGT--GTAA---TATCACTTCCGAT---TCATCGCTCGGCGTTTTCCG-TATA-ACTCGG---CTCTCG-NT-CGTAAAATGCCGAAC-TAC-TTT-CCG-A-CTTGCCCGAATATATAAATGACGTC-GATTTGT---CATG--GTN---AAATGACGTT-A-TTTCGAGAC--G-T-NN-----CGTCA-TACGA---TGA-CTGACGGAAACTA-A-T------ATGCCCGATTTTTTTCTCG--TTC-C---TTAT---A----GAGGTGATC------TG-TT-AAATAA-ATGGT-AAATGT-A-A-N--TTTTCC-TGAGTTA-TGTGATAAAA-GA-ATCTTACATTCGTGCTCATT-TATTAT----TGAAT---TTATTAAAC-----GC---G-TNNG-GNAA------AAT------------G----------------A----------GC-----CT-CGCAN----AATAT---A-T---------AT-------T--------TN--CC----AAC------TCGTT-----TA---ATAAATTC----A---AT-----AATA-AATGAGCACTNA---TGTAAGA-TCTTCTAT
Reference ( gi|2 ) : ATTATT-TACGGTGCA-GTAATGTAATAAACCCATGAC------TTATTTT-------T-TATATTAACC----TAGT--GTAA---TATCACTTCCGAT---TCATCGCTCGGTGTTTTCCG-TATA-ACTCGG---CTGTCG-GT-CATAATTTGCCGAAG-TAA-TTT-CTG-A-CTTGTCCGAATATATAAATGACGTC-GATTAGA---TATG--GTT---AAATGACGTT-A-TTTTGAGAC--A-T-AT-----CATCA-TACGA---TGA-CTCACAAAAACTA-A-A------ACGTTCGATTTTTTTCTCG--TTC-C---TTAT---A----GAGGTGATC------CT-CT-AAATGA-ATGAT-AAATGT-A-A-AC-TTTTCA-TGAGTTA-TGTGATAAAACGA-ATCTTAAATTCATGCTCATT-CATTAT----TGCAT---TTACCAAAC-----GC---G-TAGG-GGAA------AAT------------G----------------A----------GC-----CT-CGCAA----AATAT---A-T---------AT-------T--------TT--CC----AAC------TCGTT-----TA---ATAAATTC----A---AT-----AATG-AATAAGCACTCA---TGTAAGA-TCTTCTGTG
gi|8 : ATAATT-TACAGTGCCTGTG-TGTAATAAACCCATGAC--------ATTTT-------T-GAACTTATCC----TAGT--GTAA---TATCACTACTGAT---TCATCATACAGCGTTTTCCA-TATA-ATTC-A---TTGCTT-GTACATAAAATGCCGAGC-TGC-TTT-CAG-A-CATTTCTTAACATATAAATGATGTT-GATTTGT---CATT--GTGA--AAATGGCTTT-A-TTTTCAGAT--G-T-A-------------ACAA---TGA-CTGGCATAAAC-A----------------GATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGTGATC------TG-AA-AAATAA-TTGAT-AAAAGT-----TC-CATTTACTGAGTT--TGTGATAAAA-GA-ATCTTACATTTGTGTTAATT-TATTAT----TG
gi|5 : cATTTTT-T--GTTGCA-GGAGTGTAATAAACTCATGAG------AT-TTTT-------T-TATATTAACC----TGAT--GTAT---TATCACTTCTGAT---TC----------------CG-CATA-ACTCGGATCTTGTAA-GT-AA-AAT--ACCAAAC-TAC-TTT-CGG-A-CTTGCCTGTATATATAAATGACATC-GATTTGT---CATT--GTA---AAATGACGTT-A-TTTTTAG-CTGG-T-A------CGTCA-TATGA---TGG-CTAATGGAAACTA-A-T------ATTCTTGA-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGTGATC------TG-TTAAAATAA-GTGGT-AACTGT-A-C-CG-TTTTCC-TGAGTTA-TGTGTTAAA
gi|10 : gtatcacatATGATT-CATGGTGCA-GTAGTGTAATAAACCCATGAT------ATAATTT-------T-GATATTAGCC----TAGT--GTAA---TGTCACTTGTGAT---TCAAAGCTCTGTGTTTTCCA-CACA-ACTTGG---CTCTCA-TT-TGTAAAATGCCAACC-TAT-TTT-CTG-A-CTTGCCGGAATATATAAATGACATC-CATTAAA---tgatataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|25 : catACTATTCTA--GTGCA--T--TGTGATAAACCTATGAC--------ATTTT-------T-TATATTAACC----AAAT--ATAA---TATattttgtcattgagaagttacgttacaggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|24 : acATAATT-CATGGTGAA-GGAGTGTAATAAAC---TAAC------ATATATT-------TACATATTAACC----TAGT--GTAA---CA
gi|1 : cATT-TACGGTGCA-GGAATGTAATAAACTCATGACATACATTTATTTT-------T-TATATAAACC----TAGT--GTAA---TAACACTTCTGAT---TGGTTGTTCGGTGTTTTGCAATATA-ACTCAG---ATCTTGTGT--GTAAAGTTCCAAAC-TAC-TTT-CTG-A-CTTAACCGAGTATATAAATGATGTG-AATTTGT---CAAG--CTA---AAATGACATC-A-TTTCAAGAC--AGT-AT------GTCA-TACAA---CGA-TTGACGGAACCTA-A-T------GTGACTGA-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGTGATC------TG-TT-AAATAA-ATGGT-ATATAT-ACC-AC-TTTTC--TGTGATA-AGTGATAAAAAGA-ATCTTACAATCTTGCTCATT-TATCAT----TTAATTCATTACAAAAA-------------ATG-ATAT------AATGCTTTGTG----G----------------A----------GC-----CT-CACAC----AATAC---A-TTTTTGCAGCAT-------C--------TTTGCT----AAC------TTCTT-----TC---ATAAATTC----A---AT-----AATA-AATGAGCACAAA---TGTAAGA-TCCT
gi|13 : aATT-TACGGTGCC-GAAGTGTAATAAACCCGTG---------T-TTTT-------T-TATATTACGC----TAGT--GCAA---TATTACTTCCGAA---TGATCGAGCGGCGCCATACT-TACA-GCGTGG---CTCTTGTGT-ATTAA-ATG-CGAGGCTAT-TTT-CCG-A-CTTGTACGA----ACAGATGACGCC-AATATGT---CATG--GTA---AAATGATATT-A-TTTTGAGAC--G-T-TA-----CGTCATTACGA---TGA-CTGACAGAAACTA-A-T------ACGTtcata
gi|19 : tacaaaATT-TACGGTGTA-TGAGTGTAATAAACCTATGAC------ATA-TTT-------T-TATACTATTCTTTGTGGT--GTA-----ATCATCGCCAAT---TCATCGCTCGGTACTTTTCG-TAgc
gi|4 : atctcaaaTT-TACGATGCA-GTAGTATTATGATCCCATGAC------ATATTTT-------A-GACAATAGCC-----GGT--GTAA---TATCACTTCCGAT---TAGTCCTTTGGTGTTTTCCG-CAAA-ATTTGG---CCCTCA-TG-CATAAACTGTCGAAC-TAT-TTC-CAG-A-ATT-TCCCAA-ACAAGAATGAC-TCGGATTTGT---CGT---GTA---AAATGTATTT-A-TTTGGAGAA--G-T-TT-----CGTCA-TACGA---CGA-CTTGAAGAAACCA-G-T------ATGTCCGA---TTTACTCGCCTTC-C---TTAT---G----TAGGTGATA------TT-------TGA---GGT-A----T-C-A----TTTTCC-TGA-TCACTCAGATAAAA--A-ATCT----TTCGT-TTCATT-TGTAAT----TGAAT---TTATAAAACTATTGGCCA-GTTATG-ATAT------ATT------------GTTC-------------G----------GCACGTCCA-CACAA----AATGT---A-T---------GA-------T--------TG--CC----AAC------TTGTT-----TA---ATCAATTC----A---AT-----GAC--AATGTGAATTTA---AGCAAGA-TATTCTAcgtgtatttgtccgtaaaatatcgagc
gi|17 : agTT-GACGGTGCA-GGAGTGTAATACACCCATGAT------ATATTTT-------A-GATATTAACC----TAGT--GTAATACTATCAATTCCGAT---TCACCGCTCGGTGTTTTCCG-TATA-ACTCGA---CTAT-------------------AG-TA-------TGTA-CTT-TCCGAATATATAAATGGCGCC-GGTT
gi|21 : tcacatagTT-TACGGTGCA-GGAGTGTAACAAAACCATGAC------ATATTTTTTTTTTAT-TATA-TAATC----TA-TAAATAA----ATGAATTCTGAT---Ttgtcatt
gi|9 : catagT-TAAGATGCA-GTAGTGTAATAAATCCATGAC------ATGTTTT-------A-GATATTAACC----TAGT--GTAG---TATCACTTCTGAT---ACATTG-TTGATGTTTTCTG-TTTATTTTCGA---GTCTCA-TA-CGTAAAATACAGAAC-TAT-TTT-CCA-C-CTTGCCCGAATTTATCATTGATGGT-GAATTGT---CATA--G-T---AAATGATTTT-G-TTTCTAGAC--T-T-TA-----CGCCA-TGTGA---CGA-ATGATAGAAA-TA-ATT------ACGTCTGA-TTTATTCTCA--TTC-C---TTCT---A----GAAGTGATC------TG-AA-AAATAA-GGGGT-AAATGT-A-----------A-TGA---A-TGTGATGAAACAA-GTTTTA
gi|14 : aaa-TATGGCACA-GGAGTGCAAGAAACCCATAGC------CTA-----------T-TATA-----C----TTGT--TTAA---TAACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCTG---CACTCGTAC-CAAAA--TACTG-AG-CAGCTTT-CCG-G-CTTTCCCAAACATAT-----ACATT-GATTTGT---CATG--GTA---AAATAGCGAT-A-TTTGGTGGA--A-T-AA-----CATAA-CACAC---TGA-Ccaac
gi|12 : aactatatatactaatcacaGTGCC-GGAGTGAAGTAAACGTATGAA------TAATTAT-------T-TATGTTAACC----TAGT--GT-----TTGCACTGCAATT---TCACCATTTGGTGTTTTTGG-TGTA-ACTCGT---CCCTTG-TA-CATAGACCACC-ATG-TTA-CTA-TTG-GTCTTACATGAAGATCTAAATGACATT-AATCAG----TATGACATT-----ATTATGTT-A-GTTT-AAAC-------T-----GAT------GG---TAA-CTTAT-----TTGTA-A------AT------TTTTTTTCTCA--TTC-T---TTAT---A----GAGTTGATC------TG-AA-AAATAA-ATGGT-AAAT
gi|15 : tttgtgttTAATAAACCCGTGGC------ATATTTC-------T-TATATTTACC----CAGT--ATAA---CATTACTACCAAT---TCATCGCTGAGC---------------CTCGG---TTCTC---T-CCGAAAATGCCGAAC-TTC-TTT-CTA-A-CTTGCCGGAACATGTAAATGACGTC-GATTTGT---CAAG--GTA---ATATGTTGTT-A-TTTCGAGAC--G-TCACTCGTACATCA-TACGA---TGA-CTCAC
gi|3 : gttTTGGTGTTTTCCG-TCTA-AGTCGG---CTCTCG-TA-CGTAAATTGCCGAAT-TTC-TTT-CTT-A-CTTGCCCTAATATATAAAAGACGCC-GATTTGT---CATG--GTT---AAATGACGTT-ATTTTTTTTAT--A-T-ATTA---CGTCA-TATGAAACTGATCTGAC-----CTA-------------T---ATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAATAT-ATTGTAAAATCTAA-A-AA-ATTGCC-TGAGTTA-GGTATTGAAACAA-TTCTTACATTCGTGCTTATT-TATTAT----TGAAT---TAATTAAAT-----TC---G-TTGA-GAAA------AAT------------GATAAAATACTCGGCAAA----------GC-----CC-CGCTT----AATAT---A-T---------AT-------T--------TTC-CC----AAA------TCGTT-----TA---ATAAATTC----A---AT-----AATA-AAGAAGCACTCG---TGTAAGA-TGTTggacatg
gi|18 : TGCTAAAC-TAC-TGT-CCG-G-CTTGCTCTAATATATAAATG--GTC------------ATG--GTA---AAATGATGTTCA-TTTTGAGAC--C-T-TA-----CGTCA-TACGA---TGA-TTCAAGGAAATTA-A-T------ATGGCTGA-TATATTCTGA--TTT-G---TTAT---A----AAGGTAATA------TG-TT-AAATAA-ATGAT-AAAgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|7 : GCCAAAG-TAC-TTTTCTG-A-CTTGCCCAAGTATATAAATGACGTC-GATTTTT---CAGG--GTT---AGATGACGTT-A-TTTAAAGTT--A----------CGTCA-TATGA---TGA-CTCACGGAAACAA-A-ATTCAATACGCCCGA-TTTTTTCTCT--TTC-C---TTAC---A----GAGAAGATC------TG-TT-TAATAA-ATGGT-AAATGT-A-ATTT-TTTTCA-CGAGCTG-TGTCATTAAACAA-ATCTTACATTCGTGCT-ATTATATCAT----AGAAT---TTAATAAAC-----TT--------G-GCA----------------------G----------------A----------GC-----CT-CGCAT----AATAT---ATT---------TT-------T--------TT--CC----AAC------TCGTT-----TA---GTAAATTC----A---AT-----AATA-AATAAGCAATCA---GGTCAGA-TCCTTTG
gi|6 : gtacgaaaataG-A-CTTTTCCAAACATAGAAATTA------ATTATAATTTATC--GTGGAAAAATGACGTT-T-TTTTAATAC--G-T-TT-----CGTCA-TACGA---CGA-C-------AGC------------ATGCCCGATTTACT-CTTG--TCC-C---TTAT---G----AATATGAT---------------ATGT-A-----AAATAT-A-A-A--TTTTC---GAGTCG-TGTGATAAAA-----TCT-ACATTCGTGCTCATT-TATTAT----TGAAT---TCATTAAACTATTTGCCAAT-TATG-AG--------AAC------------G---------------------------GC-----TT-CGCAA----AATAT---A-T---------AT-------T--------TG--CA----AAC------TTGTT-----TA---ATAAA-----------------------AATGAGCATTCA---TGCAACA-TCTTCTAata
gi|11 : attttcgctagtgtaaactcgacccttataaaactattttaaCATT-GATTTGT---TATG--GTG---AAATTACATT-A-TTTTAAGGT--G-T-TG-----CATCA-TACAA---TGA-CTGACAGTAATTT-A-T------ATGCCCA--TTTTTTCTCG--TT------------------GAGGTGA-C------TT-GG-AACTTATATGGT-TAATGT-A-C-CA-TTTTCT-TGAGTTG-TGGTATAAAAAGA-ATCTTTCATATGTGCTCATT-TATTAT-------A------ACTAAAA-----TC---A-TAAGTAAAA------AAT------------T----------------AATGTTGTTATGC-----TTGCACAA----AAT-C---A-T---------TT-------T--------TG--CC----AAA------TCAGT-----TA---ATAAATTC----A---AT-----AATA-AATGAGCACTCA---TGTAAGA-TCCTCTttatcatctaattgttatttatacattagcttcactca
gi|20 : A-A-G------ATGTT-GATTTGATTCTCA--TTCAC---TT-T---G----GATGTGATC------TG-TT-AGATGA-ATGGT-AAATGT-ACA-A---TTTCC-TGAGTTA-TGTGATAAAA-GA-ATCTTACATT
gi|10 : tatttacatattaacctagtgtaacatgT---A----CAGGTGGTC------CG-TT-ATATAA-ATGGT-AAAT-T-A-A-CCATTTGCC-TGAGCTA-TGTGATAAAAAAA-ACCTTACATTCATGCTCATT-TATTATTCAATGTAT---TTA
gi|3 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgt-TTTTCA-CGTATCG-CGTG-TAGAACAACATCTTACACGAGTGCTTCTT-TATTAT----TGAAT---TTATTAAAC-----G----A-TTTG-GGAA------AATATATATTAAGCGG----------------G----------GC-----TT-TGCCG----AGTATTTTA-TC--------AT-------T--------TT--TCTC--AAC------GAATT-----TA---ATTAATTC----A---AT-----AATA-AATAAGCACGAA---TGTAAGA-atgttgttg
gi|16 : ttggtgttttccgtctaagtcggctctcgtacgtaaattgccgaatttctttcttacttgccctaatatataaaagacgccgatttgtcatggttaaatgacgttattttttttatatattacgtcatatgaaactgatctgacctatatttttttctcgttccttatagtggtgatcatggatctgttaaatatattgtaaaatctaaaaaattgcctgagttaggtattgaaacaatTTG-TGTGATAAAA-AA-ATCTTACATTCGAGCTCATA-TATTAT----TAAAT---TTATTAAAC-----TC---G-TTGA-CAAAACTGTTAATATCCCAACAA--G----------------G----------GC-----AT-CGCAT----AATAT---A-----------ATG------T--------TC--CC----AGT------TCTTC-----TA---ATAATTTT----A---AT-----Atgagcacacgaccgtactaaaccccacaacattatt
gi|1 : ttctcagaagtcatacaggtcatggcaaattatcgacctaatGG-ATCTTACATTTGTGCTCATT-TATTAT----TGAAT---TTATGAAAG-----AA---G-TTAG-CAAA------GAT------------G----------------------------------CT--GCAA----AA-AT---G-T---------AT-------TGTGTGAGGCT--CCACAAAGCATTATATCATTTTTTGTA---ATGAATTA----A---AT-----GATA-AATGAGCA---AGATTGTAAGATTCTTTTtcatgttgaattttct
gi|11 : aatttacggtgcaggaatgtaataaactcatgacatacatttattttttatataaacctagtgtaataacacttctgattggttgttcggtgttttgcaatataactcagatcttgtgtgtaaagttccaaactactttctgacttaaccgagtatataaatgatgtgaatttgtcaagctaaaatgacatcatttcaagacagtatgtcatacaacgattgacggaacctaatgtgactgatttattcgtgttactaattataaaaaaggtgatctgttaaataaatggtatatataccacttttctgtgataagtgataGG-ATCTTACATGAGTGCTCATT-TATTAT----TGAAT---TTATTAACT-----GA---T-TTGG-CAAA------AAT------------G----------------A----------TT-----TTGTGCAAGCATAACA----A-C---------AT-------T------------------AAT------TT-TT-----TACTTATGATTTT----AGTTAT-----AATA-AATGAGCACATA---TGAAAGATTCTTTTttcata
gi|7 : cattgatttgttatggtgaaattacattattttaaggtgttgcatcatacaatgactgacagtaatttatatgcccattttttctcgttgaggtgacttggaacttatatggttaatgtaccattttcttgagttgtggtataTGCTTATT-TATTAT----TGAAT---TTACTAAAC-----GA---G-T--T-GGAA------A-------------------------------------------------------AA----AATAT---ATT---------ATGCGAGGCT--------CTG-CC----AA---------GTT-----TA---TTAAATTC----T---AT-----GATATAAT-AGCACGAA---TGTAAGA-TTTtct
gi|5 : gtacgaaaatagccaaagtacttttctgacttgcccaagtatataaatgacgtcgatttttcagggttagatgacgttatttaaagttacgtcatatgatgactcacggaaacaaaattcaatacgcccgattttttctctttccttacagagaagatctgtttaataaatggtaaatgtaatttttttcacgagctgtgtcattaaacAT------------A----------------A----------AC-----CT-CGCAT----AATAT---A-T---------CTA------T--------TG--CA----AAC------TTGTT-----CA---ATGAATTC----A---AT-----AATA-AACAAGCACTCT---TGTAAGA-Tatcaggtcagatcctttgtata
gi|22 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgat----AATAT---A-T---------CT-------T--------TG--CA----AAC------TCGTT-----GA---ATGAATTCCATTA---ATTTCAAAACA-AACGAGGACTTA---TGTAATA-TCtcacta
gi|16 : gtatT-------T--------TG--TC----AAC------GAGTT-----TA---ATAAATTT----A---AT-----AATA-TATGAGCTCGAA---TGTAAGA-TTTTTT
gi|6 : ttctcagaagtcatacaggtcatggcaaattatcgacctaatttgtgtgataC----AAA------TAGTT-----TA---ATGAATTC----A---AT-----AATA-AATGAGCACGAA---TGT-AGA-TTTTactgttaatatcccaacaagggcatcgcataatataatgttcccagttcttctaataattttaatatcatgttgaattttct
gi|26 : attttcgctagtgtaaactcgacccttataaaactattttaagacttttccaaacatagaaattaattataatttatcgtggaaaaatgacgtttttttaatacgtttcgtcatacgacgacagcatgcccgatttactcttgtcccttatgaatatgatatgtaaaatataaattttcgagtcgtgtgatC------TCGTT-----CT---ATAAATTC----A---AT-----AATT-ATTAA--ACTCG---TGAAAGA-TCTTCTAccaattatgagaacggcttcgcaaaatatatatttgcaaacttgtttaataaaaatgagcattcatgcaacatcttctatttatcatctaattgttatttatacattagcttcactca
gi|10 : CATT-----AA---ATACATTG----A---AT-----AATA-AATGAGCATGAA---TGTAAGG-TTTTTTatata
gi|28 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgttacaggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaTT-----CA---ATAAATTC----A---AT-----AATA-AACAAGCGCTCC---TGTAttgttg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): TTACCGCATGATTGACAATACAGGAGTGTTATACAGCCATGCCATGTTTTAATTGGCTAAGTG
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1111 11 11111111 11111111111111 1 22222222 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222
lowQualScore : 1 333333333 2 7777777 0 5555 33 444 555 2 2 0 2 2 2 2 4444 33 2 66 44444 7777777 0 88 2 444 11 2 11111111 2 2 44 00000000000000 222 9 1 77 3 555 77777777 9999999 444 33 55555 3 99999999 0 3 3 6 66 0 4 9999 666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 4 4 99999999999999 1 7777 88888 1
lowQualScore : . ......... . ....... . .... .. ... ... . . . . . . . .... .. . .. ..... ....... . .. . ... .. . ........ . . .. .............. ... . . .. . ... ........ ....... ... .. ..... . ........ . . . . .. . . .... ................................................................................. . . . .............. . .... ..... .
lowQualScore : 0 222222222 4 6666666 9 3333 44 444 000 6 1 6 7 9 7 7 7777 44 4 99 33333 6666666 4 44 5 444 33 2 66666666 5 5 00 88888888888888 888 2 0 33 1 444 00000000 3333333 111 99 00000 1 11111111 8 1 1 2 44 0 0 4444 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 66666666666666 0 1111 33333 0
consensus : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAAT--A---TCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTNCGTA--AAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GA-------TTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGATGAC-TGACGGAAAC------TA---A--TACGCCCGATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATT----AAAC------C--G-TNTG-GNAA-AAT-----------------G----------------A-----G-----C---------CTCGCANAATAT-A-T------N-----T-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
Reference ( family-2623 ) : ATNATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAAT--A---TCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGNTCGTA--AAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GA-------TTTGTCATGGT-NAAATGACGTT-A---TTTCGAGACGT------NNCGTCA-TACGATGAC-TGACGGAAAC------TA---A--TATGCCCGATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATT----AAAC-----GC--G-TNNG-GNAA-AAT-----------------G----------------A-----G-----C---------CTCGCANAATAT-A-T------A-----T-TTNCCAACTCGTTTAATAAATTC----AAT-----AATAAATGAGCACTNATGTAAGATCTTCTAT
gi|1 : ATTTACGGTGCAGGAATGTAATAAACTCATGACATACATTTAT-TT-T-------TTATATAAACC----TAGTGTAAT--A---ACACTTCTGATT---GGTTGTTCGGTGTTTTGCAATATA-ACTCA-GATCTTGTGTGTA--AAGT-TCCAAACTACTTTCT-GACTTAACCGAGTATATAAATGATGT-G-AA-------TTTGTCAAGCT-AAAATGACATC-A---TTTCAAGACAG------TATGTCA-TACAACGAT-TGACGGAACC------TA---A--TGTGACTGA-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGT-------GATCTGTT-AAA--TAAATGGTATA---TAT-ACCA--C--TTTT-CTGTGATA-AGTGA-TAAAAA-GAA-TCTTACAATCTTGCTCATT-TATCATTTAATTCATTACAAAAA-------------ATG-ATAT-AATGCTTTGTG---------G----------------A-----G-----C---------CTCACACAATAC-A-TTTTTGCAGCATCT-TTGCTAACTTCTTTCATAAATTC----AAT-----AATAAATGAGCACAAATGTAAGATCCTTCAT
gi|10 : aATGATTCATGGTGCAGTAGTGTAATAAACCCATGATATA------A-TT-T-------TGATATTAGCC----TAGTGTAAT--G---TCACTTGTGATT---CAAAGCTCTGTGTTTTCCA-CACA-ACTTG-GCTCTCATTTGTA--AAAT-GCCAACCTATTTTCT-GACTTGCCGGAATATATAAATGACAT-C-CATTAAAATTTTGTCATTGA-GAAGTTACGTT-A---C----AGGTGG------TCCGTTA-T---ATAAA-TG--GTAAAT------TAACCA--TTTGCCTGAa
gi|10 : catT---A----CAGGT-------GGTCCGTT-ATA--TAAATGGTAAA---T-T-A--A--CCATTTGCCTGAGCTA-TGTGA-T-AAAA-AAAACCTTACATTCATGCTCATT-TATTATTCAATGTATT----TAAT-----Ggctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|11 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgtCAT-T-GA-------TTTGTTATGGT-GAAATTACATT-A---TTTTAAGGTGT------TGCATCA-TACAATGAC-TGACAGTAAT------TT---A--TATGCCCA--TTTTTTCTCG--TT------------------GAGGT-------GACTTG---GAACTTATATGGTTAA---TGT-AC-C--A--TTTTCTTGAGTTG-TGGTA-TAAAAA-GAA-TCTTTCATATGTGCTCATT-TATTAT--A----ACT----AAAA-----TC--A-TAAGTAAAA-AAT-----------------T----------------A-----A-----TGTTGTTATGCTTGCACAAAATCA-T------T-----T-TTGCCAAATCAGTTAATAAATTC----AAT-----AATAAATGAGCACTCATGTAAGATCCTCTttgttg
gi|12 : GTGCCGGAGTGAAGTAAACGTATGA-ATA------A-TTAT-------TTATGTTAACC----TAGTGT--T--T---GCACTGCAATTT---CACCATTTGGTGTTTTTGG-TGTA-ACTCG-TCCCTTGTACATA--GACC-ACCATGTTACTATTG-GTCTTACATGAAGATCTAAATGAC------A-------TTAATCA--GT----ATGACATT-A---TT-----ATGT------TA-GTT--TA----AAC-TGATGGTAAC------TT---A--TTTGTAAATTTTTTTTCTCA--TTC-T---TTAT---A----GAGTT-------GATCTGAA-AAA--TAAATGGTAAA---T
gi|13 : tttgtgttATTTACGGTGCCGAAGTGTAATAAACCCGTG---T-------T-TT-T-------TTATATTACGC----TAGTGCAAT--A---TTACTTCCGAAT---GATCGAGCGGCGCCATACT-TACA-GCGTG-GCTCTTGT--GTATTAAAT-GCGAGGCTATTTTCC-GACTTGTACGA----ACAGATGACGC-C-AA-------TATGTCATGGT-AAAATGATATT-A---TTTTGAGACGT------TACGTCATTACGATGAC-TGACAGAAAC------TA---A--TACG
gi|14 : tacaaaATCACATATGGCACAGGAGTGCAAGAAACCCATAGCCTA------T-T------------ATA-----C----TTGTTTAAT--A---ACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCT-GCACTCGTAC-CA--AAAT-ACTGAGCAGCTTTCC-GGCTTTCCCAAACATATA-----CAT-T-GA-------TTTGTCATGGT-AAAATAGCGAT-A---TTTGGTGGAAT------AACATAA-CACACTGAC-tgc
gi|15 : aactatatatactaGTTTAATAAACCCGTGGCATA------T-TT-C-------TTATATTTACC----CAGTATAAC--A---TTACTACCAATT---CATCGCTGAGC---------------CTCG-GTTCTC-TCCG-A--AAAT-GCCGAACTTCTTTCT-AACTTGCCGGAACATGTAAATGACGT-C-GA-------TTTGTCAAGGT-AATATGTTGTT-A---TTTCGAGACGTCACTCGTACATCA-TACGATGAC-TCACGGA
gi|16 : ATGGCAAA---T-T-A--------TCGACCTAATTTG-TGTGA-T-AAAA-AAA-TCTTACATTCGAGCTCATA-TATTATTAAATTTATT----AAAC-----TC--G-T-TG-ACAA-AACTGTTAATATCCCAACAAG----------------G-----G-----C---------ATCGCATAATAT-A--------A-----TGTTCCCAGTTCTTCTAATAATTTT----AAT-----Acatg
gi|17 : ttctcagaagtcatacaggtcATAGTTGACGGTGCAGGAGTGTAATACACCCATGATATA------T-TT-T-------AGATATTAACC----TAGTGTAAT--ACTATCAATTCCGATT---CACCGCTCGGTGTTTTCCG-TATA-ACTCG-ACT----ATAGTA-----T-G------TACTTT----------CCGAATATATAAATGGCGC-C-GG-------TTTGTCATtcatgttgaattttct
gi|18 : tcacT-GCTAAACTACTGTCC-GGCTTGCTCTAATATATAAATG-------------------GTCATGGT-AAAATGATGTTCA---TTTTGAGACCT------TACGTCA-TACGATGAT-TCAAGGAAAT------TA---A--TATGGCTGA-TATATTCTGA--TTT-G---TTAT---A----AAGGT-------AATATGTT-AAA--TAAATGATAAA---t
gi|19 : ATTTACGGTGTATGAGTGTAATAAACCTATGACATA--------TT-T-------TTATACTATTCTTTGTGGTGTA----A---TCATCGCCAATT---CATCGCTCGGTACTTTTCG-TA------CGTGTATTTGTCCGTA--AAAT-ATCGAGC
gi|2 : atctcaaaATTATTTACGGTGCAGTAATGTAATAAACCCATGACTTA------T-TT-T-------TTATATTAACC----TAGTGTAAT--A---TCACTTCCGATT---CATCGCTCGGTGTTTTCCG-TATA-ACTCG-GCTGTCGGTCATA--ATTT-GCCGAAGTAATTTCT-GACTTGTCCGAATATATAAATGACGT-C-GA-------TTAGATATGGT-TAAATGACGTT-A---TTTTGAGACAT------ATCATCA-TACGATGAC-TCACAAAAAC------TA---A--AACGTTCGATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCCTCT-AAA--TGAATGATAAA---TGTAA--A--C--TTTTCATGAGTTA-TGTGA-T-AAAACGAA-TCTTAAATTCATGCTCATT-CATTATTGCATTTACC----AAAC-----GC--G-TAGG-GGAA-AAT-----------------G----------------A-----G-----C---------CTCGCAAAATAT-A-T------A-----T-TTTCCAACTCGTTTAATAAATTC----AAT-----AATGAATAAGCACTCATGTAAGATCTTCTGT
gi|20 : GATTTGATTCTCA--TTCAC---TT-T---G----GATGT-------GATCTGTT-AGA--TGAATGGTAAA---TGT-A--C--A--ATTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTg
gi|21 : tatttacatattaacctagtgtaacatgaagatgttATAGTTTACGGTGCAGGAGTGTAACAAAACCATGACATA------T-TT-TTTTTTTATTATA-TAATC----TA-TA-AATAAA---TGAATTCTGATT---
gi|22 : cGTATAATAT-A-T------C-----T-TTGCAAACTCGTTGAATGAATTCCATTAATTTCAAAACAAACGAGGACTTATGTAATATC
gi|23 : ATGATTGACAATACAGGAGTGTTATACAGCCATGCCATG------T-TT-T-------
gi|24 : ttaccgcATAATTCATGGTGAAGGAGTGTAATAAAC---TAACATA------TATT-T-------ACATATTAACC----TAGTGTAAC--A---aattggctaagtg
gi|25 : cTGTGATAAACCTATGACAT---------TT-T-------TTATATTAACC----AAATATAAT--A---T
gi|26 : acactattctagtgcatCTCGTTCTATAAATTC----AAT-----AATTATTAA--ACTCGTGAAAGATCTTCTAT
gi|28 : TTCAATAAATTC----AAT-----AATAAACAAGCGCTCCTGTAatata
gi|3 : TTGGTGTTTTCCG-TCTA-AGTCG-GCTCTCGTACGTA--AATT-GCCGAATTTCTTTCT-TACTTGCCCTAATATATAAAAGACGC-C-GA-------TTTGTCATGGT-TAAATGACGTT-ATTTTTTTTATATAT------TACGTCA-TATGA-AAC-TGAT-----C------TG---ACCTAT-----ATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAA--TATATTGTAAAATCTAA-A--A--A--ATTGCCTGAGTTA-GGTAT-T-GAAA-CAATTCTTACATTCGTGCTTATT-TATTATTGAATTAATT----AAAT-----TC--G-TTGA-GAAA-AAT-----------------GATAAAATACTCGGCAAA-----G-----C---------CCCGCTTAATAT-A-T------AT----T-TTCCCAAATCGTTTAATAAATTC----AAT-----AATAAAGAAGCACTCGTGTAAGATGTT
gi|4 : TTTACGATGCAGTAGTATTATGATCCCATGACATA------T-TT-T-------AGACAATAGCC-----GGTGTAAT--A---TCACTTCCGATT---AGTCCTTTGGTGTTTTCCG-CAAA-ATTTG-GCCCTCATGCATA--AACT-GTCGAACTATTTCCA-GAATTTCCCAAACA-A-GAATGAC-T-CGGA-------TTTGTCGT-GT-AAAATGTATTT-A---TTTGGAGAAGT------TTCGTCA-TACGACGACTTGA-AGAAAC------CA---G--TATGTCCGA---TTTACTCGCCTTC-C---TTAT---G----TAGGT-------GATAT-TT-GA--------GGTA-------T-C--A-----TTTTCCTGA-TCACTCAGA-T-AAAA--AA-TCT----TTCGT-TTCATT-TGTAATTGAATTTATA----AAACTATTGGCCAGTTATG-ATAT-ATT-----------------GTTC-------------G-----GCACGTC---------CACACAAAATGT-A-T------G-----A-TTGCCAACTTGTTTAATCAATTC----AAT-----GAC-AATGTGAATTTAAGCAAGATATTCTATgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|5 : agTGCAGGAGTGTAATAAACTCATGAGAT-------T-TT-T-------TTATATTAACC----TGATGTATT--A---TCACTTCTGATT---C----------------CG-CATA-ACTCG-GATCTTGTAAGTA--AAAT-ACCAAACTACTTTCG-GACTTGCCTGTATATATAAATGACAT-C-GA-------TTTGTCATTGT-AAAATGACGTT-A---TTTTTAGCTGG------TACGTCA-TATGATGGC-TAATGGAAAC------TA---A--TATTCTTGA-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGT-------GATCTGTTAAAA--TAAGTGGTAAC---TGT-AC-C--G--TTTTCCTGAGTTA-TGTGT-T-AAAT-GA
gi|5 : gtatcacatattttttgtAT-----------------A----------------A-----A-----C---------CTCGCATAATAT-A-T------C-----TATTGCAAACTTGTTCAATGAATTC----AAT-----AATAAACAAGCACTCTTGTAAGATtataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|6 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgatG-TA-A-ACTCG-ACCCT------TA--TAA------AACTATTTTAA-GACTTTTCCAAACATAGAAATTAATTAT-AA-------TTTATCGTGGA-AAAATGACGTT-T---TTTTAATACGT------TTCGTCA-TACGACGAC------------------A---G--CATGCCCGA-TTTACTCTTG--TCC-C---TTAT---G----AATAT-------GATATGTA-AAA--TA--------------T-A--A--A--TTTTC--GAGTCG-TGTGA-T-AA----AA-TC-TACATTCGTGCTCATT-TATTATTGAATTCATT----AAAC------T--A-TTTG-CCAATTAT-----------------G----------------AGAACGG-----C---------TTCGCAAAATAT-A-T------A-----T-TTGCAAACTTGTTTAATAA-------------------AAATGAGCATTCATGCAACATCTTCTATtcacta
gi|7 : attttcgctagtA--AAATAGCCAAAGTACTTTTCTGACTTGCCCAAGTATATAAATGACGT-C-GA-------TTTTTCAGGGT-TAGATGACGTT-A---TTT--AAA-GT------TACGTCA-TATGATGAC-TCACGGAAACAAAATTCA---A--TACGCCCGA-TTTTTTCTCT--TTC-C---TTAC---A----GAGAA-------GATCTGTT-TAA--TAAATGGTAAA---TGT-A--ATTT--TTTTCACGAGCTG-TGTCATT-AAAC-AAA-TCTTACATTCGTGCT-ATTATATCATAGAATTTAAT----AAAC------------TTG-GCA----------------------G----------------A-----G-----C---------CTCGCATAATAT-ATT------T-----T-TTTCCAACTCGTTTAGTAAATTC----AAT-----AATAAATAAGCAATCAGGTCAGATCCTTTGTttatcatctaattgttatttatacattagcttcactca
gi|8 : gtacgATAATTTACAGTGCCTGTGTGTAATAAACCCATGACAT---------TT-T-------TGAACTTATCC----TAGTGTAAT--A---TCACTACTGATT---CATCATACAGCGTTTTCCA-TATA-ATTCA-TTGCTTGTACATA--AAAT-GCCGAGCTGCTTTCA-GACATTTCTTAACATATAAATGATGT-T-GA-------TTTGTCATTGTGAAAATGGCTTT-A---TTTTCAGATGT------A--------ACAATGAC-TGGCATAAAC-------A-------------GATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGT-------GATCTGAA-AAA--TAATTGATAAA---AGT-T--C--C--ATTTACTGAGTT--TGTGA-T-AAAA-GAA-TCTTACATTTGTGTTAATT-TATTATTGata
gi|9 : cTTAAGATGCAGTAGTGTAATAAATCCATGACATG------T-TT-T-------AGATATTAACC----TAGTGTAGT--A---TCACTTCTGATA---CATTG-TTGATGTTTTCTG-TTTATTTTCG-AGTCTCATACGTA--AAAT-ACAGAACTATTTTCC-ACCTTGCCCGAATTTATCATTGATGG-T-GA-------ATTGTCATAGT--AAATGATTTT-G---TTTCTAGACTT------TACGCCA-TGTGACGAA-TGATAGAAA-------TA---AT-TACGTCTGA-TTTATTCTCA--TTC-C---TTCT---A----GAAGT-------GATCTGAA-AAA--TAAGGGGTAAA---TGT-A--A-----------TGA---A-TGTGA-T-GAAA-CAAGTTTTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1 22222222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111
lowQualScore : 333333333 2 7777777 0 5555 444 33 555 2 2 0 2 2 2 2 1 4 1 2 66 44444 1 2 2 444 55 2 777777 2 0 2 0 33 888888 3333 1 0 3 9 1 77 3 555 77777777 9999999 444 33 55555 3 99999999 0 3 3 6 66 0 4 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 99999999999 4 4 55 4 7777 88888 2
lowQualScore : ......... . ....... . .... ... .. ... . . . . . . . . . . . .. ..... . . . ... .. . ...... . . . . .. ...... .... . . . . . .. . ... ........ ....... ... .. ..... . ........ . . . . .. . . . .................................................................................. . ........... . . .. . .... ..... .
lowQualScore : 222222222 4 6666666 9 3333 444 44 000 6 1 6 7 9 7 7 4 3 2 4 99 33333 9 5 5 444 33 0 777777 7 5 9 1 99 888888 2222 6 8 1 2 0 33 1 444 00000000 3333333 111 99 00000 1 11111111 8 1 1 2 44 0 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 00000000000 0 0 00 0 1111 33333 5
consensus : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTG-GCAA-A--AT-----------------G----------------A------G----------C---------CTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
Reference ( family-2623 ) : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTNCGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGATGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTG-GNAA-A--AT-----------------G----------------A------G----------C---------CTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
gi|1 : AATTTACGGTGCAGGAATGTAATAAACTCATGACATACATTTAT-TT-T-------TTATATAAACC----TAGTGTAA---T--AACACTTCTGATT---GGTTGTTCGGTGTTTTGCAATATA-ACTCA-GATCTTGTGTGTAAAGT-TCCAAACTACTTTCT-GACTTAACCGAGTATATAAATGATGT-G-AATTTGTCAAGCT-AAAATGACATC-A---TTTCAAGACAG------TATGTCA-TACAACGAT-TGACGGAACC------TAA-TGTGACTG-A-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGT-------GATCTGTT-AAA--TAAATGGTATA---TAT-ACCA--C--TTTT-CTGTGATA-AGTGA-TAAAAA-GAA-TCTTACAATCTTGCTCATT-TATCATTTAATTCATTACA-A-AAAATG-ATAT-A--ATGCTTTGTG---------G----------------A------G----------C---------CTCACACAATACATTTTTGCAGC-A-T-CT-TTGCTAACTTCTTTCATAAATTC----AAT-----AATAAATGAGCACAAATGTAAGATCCTTCAT
gi|10 : ATGATTCATGGTGCAGTAGTGTAATAAACCCATGATATA------A-TT-T-------TGATATTAGCC----TAGTGTAA---T--GTCACTTGTGATT---CAAAGCTCTGTGTTTTCCA-CACA-ACTTG-GCTCTCATTTGTAAAAT-GCCAACCTATTTTCT-GACTTGCCGGAATATATAAATGACAT-C--------CAT--T-AAAATTTTGTC-A---TT--GAGAAGT------TACGTTA-CAa
gi|10 : catT---A----CAGGT-------GGTCCGTT-ATA--TAAATGGTAAA---T-T-A--A--CCATTTGCCTGAGCTA-TGTGA-T-AAAA-AAAACCTTACATTCATGCTCATT-TATTATTCAATGTATTTAA-ggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|11 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgtCAT-T-GATTTGTTATGGT-GAAATTACATT-A---TTTTAAGGTGT------TGCATCA-TACAATGAC-TGACAGTAAT------TTA-TATGCCCA---TTTTTTCTCG--TT------------------GAGGT-------GACTTG---GAACTTATATGGTTAA---TGT-AC-C--A--TTTTCTTGAGTTG-TGGTA-TAAAAA-GAA-TCTTTCATATGTGCTCATT-TATTAT--AA-CTA--AAA-T-CATAAGTAAAA-A--AT-----------------T----------------A------A----------TGTTGTTATGCTTGCACAAAA-----------TCA-T-TT-TTGCCAAATCAGTTAATAAATTC----AAT-----AATAAATGAGCACTCATGTAAGATCCTCTtgttgttg
gi|12 : GTGCCGGAGTGAAGTAAACGTATGA-ATA------A-TTAT-------TTATGTTAACC----TAGTGT-----T--TGCACTGCAATTT---CACCATTTGGTGTTTTTGG-TGTA-ACTCG-TCCCTTGTACATAGACC-ACCATGTTACTATTG-GTCTTACATGAAGATCTAAATGAC------ATTAATCA--GT-A---TGACATT-A---TT-----ATGT------TA-GTT--TA----AAC-TGATGGTAAC------TTA-TTTGTAAA-TTTTTTTTCTCA--TTC-T---TTAT---A----GAGTT-------GATCTGAA-AAA--TAAATGGTAAA---T
gi|13 : tttgtgttAATTTACGGTGCCGAAGTGTAATAAACCCGTG---T-------T-TT-T-------TTATATTACGC----TAGTGCAA---T--ATTACTTCCGAAT---GATCGAGCGGCGCCATACT-TACA-GCGTG-GCTCTTGTGTATTAAAT-GCGAGGCTATTTTCC-GACTTGTACGA----ACAGATGACGC-C-AATATGTCATGGT-AAAATGATATT-A---TTTTGAGACGT------TACGTCATTACGATGAC-TGACAGAAAC------TAA-TACG
gi|14 : tacaaTATGGCACAGGAGTGCAAGAAACCCATAGCCTA------T-T------------ATA-----C----TTGTTTAA---T--AACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCT-GCACTCGTAC-CAAAAT-ACTGAGCAGCTTTCC-GGCTTTCCCAAACATAT-----ACAT-T-GATTTGTCATGGT-AAAATAGCGAT-A---TTTtgc
gi|15 : aactatatatactaatcacaGTTTAATAAACCCGTGGCATA------T-TT-C-------TTATATTTACC----CAGTATAA---C--ATTACTACCAATT---CATCGCTGAGC---------------CTCG-GTTCTC-TCCG-AAAAT-GCCGAACTTCTTTCT-AACTTGCCGGAACATGTAAATGACGT-C-GATTTGTCAAGGT-AATATGTTGTT-A---TTTCGAGACGTCACTCGTACATCA-TACGATGAC-TCACGGAggtggaataacataacacactgac
gi|16 : ATGGCAAA---T-T-A--------TCGACCTAATTTG-TGTGA-T-AAAA-AAA-TCTTACATTCGAGCTCATA-TATTATTAAATTTATTAAA-CTCGT-TG-ACAA-A--ACTGTTAATATCCCAACAAG----------------G------G----------C---------ATCGCATAATA-----------T-A-A-TG-TTCCCAGTTCTTCTAATAATTTT----AAT-----Acatg
gi|17 : ttctcagaagtcatacaggtcATAGTTGACGGTGCAGGAGTGTAATACACCCATGATATA------T-TT-T-------AGATATTAACC----TAGTGTAATACT--ATCAATTCCGATT---CACCGCTCGGTGTTTTCCG-TATA-ACTCG-ACTATAGT-------AT-G------TACTTT----------CCGAATATATAAATGGCGC-C-GGTTTGTCATtcatgttgaattttct
gi|18 : tcacT-GCTAAACTACTGTCC-GGCTTGCTCTAATATATAAATG------------GTCATGGT-AAAATGATGTTCA---TTTTGAGACCT------TACGTCA-TACGATGAT-TCAAGGAAAT------TAA-TATGGCTG-A-TATATTCTGA--TTT-G---TTAT---A----AAGGT-------AATATGTT-AAA--TAAATGATAAA---t
gi|19 : AATTTACGGTGTATGAGTGTAATAAACCTATGACATA--------TT-T-------TTATACTATTCTTTGTGGTGTA-------ATCATCGCCAATT---CATCGCTCGGTACTTTTCG-TA------CGTGTATTTGTCCGTAAAAT-ATCGAGC
gi|2 : atctcaaATTATTTACGGTGCAGTAATGTAATAAACCCATGACTTA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGTGTTTTCCG-TATA-ACTCG-GCTGTCGGTCATAATTT-GCCGAAGTAATTTCT-GACTTGTCCGAATATATAAATGACGT-C-GATTAGATATGGT-TAAATGACGTT-A---TTTTGAGACAT------ATCATCA-TACGATGAC-TCACAAAAAC------TAA-AACGTTCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCCTCT-AAA--TGAATGATAAA---TGTAA--A--C--TTTTCATGAGTTA-TGTGA-T-AAAACGAA-TCTTAAATTCATGCTCATT-CATTATTGCATTTACCAAA-CGCGTAGG-GGAA-A--AT-----------------G----------------A------G----------C---------CTCGCAAAATA-----------T-A-T-AT-TTTCCAACTCGTTTAATAAATTC----AAT-----AATGAATAAGCACTCATGTAAGATCTTCTGT
gi|20 : G-ATTTGATTCTCA--TTCAC---TT-T---G----GATGT-------GATCTGTT-AGA--TGAATGGTAAA---TGT-A--C--A--ATTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTg
gi|21 : tatttacatattaacctagtgtaacatgaagatgttATAGTTTACGGTGCAGGAGTGTAACAAAACCATGACATA------T-TT-TTTTTTTATTATA-TAATC----TA-TA-AA---TAAATGAATTCTGATT---
gi|22 : cGTATAATA-----------T-A-T-CT-TTGCAAACTCGTTGAATGAATTCCATTAATTTCAAAACAAACGAGGACTTATGTAATATC
gi|23 : ATGATTGACAATACAGGAGTGTTATACAGCCATGCCATG------T-TT-T-------
gi|24 : ttaccgcATAATTCATGGTGAAGGAGTGTAATAAAC---TAACATA------TATT-T-------ACATATTAACC----TAGTGTAA---C--Aaattggctaagtg
gi|25 : cTGTGATAAACCTATGACAT---------TT-T-------TTATATTAACC----AAATATAA---T--AT
gi|26 : acactattctagtgcatCTCGTTCTATAAATTC----AAT-----AATTATTAA--ACTCGTGAAAGATCTTCTAT
gi|28 : TTCAATAAATTC----AAT-----AATAAACAAGCGCTCCTGTAatata
gi|3 : TTGGTGTTTTCCG-TCTA-AGTCG-GCTCTCGTACGTAAATT-GCCGAATTTCTTTCT-TACTTGCCCTAATATATAAAAGACGC-C-GATTTGTCATGGT-TAAATGACGTT-ATTTTTTTTATATAT------TACGTCA-TATGA-AAC-TGAT-----C------TGA-----CCTATATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAA--TATATTGTAAAATCTAA-A--A--A--ATTGCCTGAGTTA-GGTAT-T-GAAA-CAATTCTTACATTCGTGCTTATT-TATTATTGAATTAATTAAATT-CGTTGA-GAAA-A--AT-----------------GATAAAATACTCGGCAAA------G----------C---------CCCGCTTAATA-----------T-A-TATT-TTCCCAAATCGTTTAATAAATTC----AAT-----AATAAAGAAGCACTCGTGTAAGATGTT
gi|4 : AGTTTACGATGCAGTAGTATTATGATCCCATGACATA------T-TT-T-------AGACAATAGCC-----GGTGTAA---T--ATCACTTCCGATT---AGTCCTTTGGTGTTTTCCG-CAAA-ATTTG-GCCCTCATGCATAAACT-GTCGAACTATTTCCA-GAATTTCCCAAACA-A-GAATGAC-T-CGGATTTGTCGT-GT-AAAATGTATTT-A---TTTGGAGAAGT------TTCGTCA-TACGACGACTTGA-AGAAAC------CAG-TATGTCCG-A---TTTACTCGCCTTC-C---TTAT---G----TAGGT-------GATAT-TT-GA--------GGTA-------T-C--A-----TTTTCCTGA-TCACTCAGA-T-AAAA--AA-TCT----TTCGT-TTCATT-TGTAATTGAATTTATAAAA-C-TAT-TG-GCCA-GTTAT-----------------G----------------ATATATTGTTCGGCACGTC---------CACACAAAATG-----------T-A-T-GA-TTGCCAACTTGTTTAATCAATTC----AAT-----GAC-AATGTGAATTTAAGCAAGATATTCTATgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|5 : ATATTTTTTGTTGCAGGAGTGTAATAAACTCATGAGAT-------T-TT-T-------TTATATTAACC----TGATGTAT---T--ATCACTTCTGATT---C----------------CG-CATA-ACTCG-GATCTTGTAAGTAAAAT-ACCAAACTACTTTCG-GACTTGCCTGTATATATAAATGACAT-C-GATTTGTCATTGT-AAAATGACGTT-A---TTTTTAGCTGG------TACGTCA-TATGATGGC-TAATGGAAAC------TAA-TATTCTTG-A-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGT-------GATCTGTTAAAA--TAAGTGGTAAC---TGT-AC-C--G--TTTTCCTGAGTTA-TGTGT-T-AAAT-GA
gi|5 : gtatcac--AT-----------------A----------------A------A----------C---------CTCGCATAATA-----------T-A-T-CTATTGCAAACTTGTTCAATGAATTC----AAT-----AATAAACAAGCACTCTTGTAAGATtataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|6 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgatG-TA-A-ACTCG-ACCCT------TATAA------AACTATTTTAA-GACTTTTCCAAACATAGAAATTAATTAT-AATTTATCGTGGA-AAAATGACGTT-T---TTTTAATACGT------TTCGTCA-TACGACGAC------------------AG-CATGCCCG-A-TTTACTCTTG--TCC-C---TTAT---G----AATAT-------GATATGTA-AAA--TA--------------T-A--A--A--TTTTC--GAGTCG-TGTGA-T-AA----AA-TC-TACATTCGTGCTCATT-TATTATTGAATTCATTAAA-C-TATTTG-CCAATT--AT-----------------G----------------AGAACG-G----------C---------TTCGCAAAATA-----------T-A-T-AT-TTGCAAACTTGTTTAATAA-------------------AAATGAGCATTCATGCAACATCTTCTATtcacta
gi|7 : attttcgctagtGTACG-AAAATAGCCAAAGTACTTTTCTGACTTGCCCAAGTATATAAATGACGT-C-GATTTTTCAGGGT-TAGATGACGTT-A---TTT--AAA-GT------TACGTCA-TATGATGAC-TCACGGAAACAAAATTCAA-TACGCCCG-A-TTTTTTCTCT--TTC-C---TTAC---A----GAGAA-------GATCTGTT-TAA--TAAATGGTAAA---TGT-A--ATTT--TTTTCACGAGCTG-TGTCATT-AAAC-AAA-TCTTACATTCGTGCT-ATTATATCATAGAATTTAATAAA-C----TTG-GCA------------------------G----------------A------G----------C---------CTCGCATAATA-----------T-ATT-TT-TTTCCAACTCGTTTAGTAAATTC----AAT-----AATAAATAAGCAATCAGGTCAGATCCTTTGTttatcatctaattgttatttatacattagcttcactca
gi|8 : ATAATTTACAGTGCCTGTGTGTAATAAACCCATGACAT---------TT-T-------TGAACTTATCC----TAGTGTAA---T--ATCACTACTGATT---CATCATACAGCGTTTTCCA-TATA-ATTCA-TTGCTTGTACATAAAAT-GCCGAGCTGCTTTCA-GACATTTCTTAACATATAAATGATGT-T-GATTTGTCATTGTGAAAATGGCTTT-A---TTTTCAGATG-------TA-------ACAATGAC-TGGCATAAAC-------A---------G-ATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGT-------GATCTGAA-AAA--TAATTGATAAA---AGT-T--C--C--ATTTACTGAGTT--TGTGA-T-AAAA-GAA-TCTTACATTTGTGTTAATT-TATTATTGata
gi|9 : cAAATTAAGATGCAGTAGTGTAATAAATCCATGACATG------T-TT-T-------AGATATTAACC----TAGTGTAG---T--ATCACTTCTGATA---CATTG-TTGATGTTTTCTG-TTTATTTTCG-AGTCTCATACGTAAAAT-ACAGAACTATTTTCC-ACCTTGCCCGAATTTATCATTGATGG-T-GAATTGTCATAGT--AAATGATTTT-G---TTTCTAGACTT------TACGCCA-TGTGACGAA-TGATAGAAA-------TAATTACGTCTG-A-TTTATTCTCA--TTC-C---TTCT---A----GAAGT-------GATCTGAA-AAA--TAAGGGGTAAA---TGT-A--A-----------TGA---A-TGTGA-T-GAAA-CAAGTTTTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1 22222222 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111
lowQualScore : 333333333 2 7777777 0 5555 444 33 555 2 2 0 2 2 2 2 1 0 1 2 66 44444 1 2 2 444 55 2 777777 2 4 2 0 33 888888 3333 1 0 3 9 1 77 3 555 77777777 9999999 444 33 55555 3 99999999 0 3 3 6 66 0 4 1 6666666666666666666666666666666666666666666666666666666666666666666666666666 1 99999999999 4 4 55 4 7777 88888 2
lowQualScore : ......... . ....... . .... ... .. ... . . . . . . . . . . . .. ..... . . . ... .. . ...... . . . . .. ...... .... . . . . . .. . ... ........ ....... ... .. ..... . ........ . . . . .. . . . ............................................................................ . ........... . . .. . .... ..... .
lowQualScore : 222222222 4 6666666 9 3333 444 44 000 6 1 6 7 9 7 7 4 1 1 4 99 33333 9 5 5 444 33 0 777777 7 5 9 1 99 888888 2222 6 8 1 2 0 33 1 444 00000000 3333333 111 99 00000 1 11111111 8 1 1 2 44 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777 0 00000000000 0 0 00 0 1111 33333 5
consensus : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
Reference ( family-2623 ) : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
gi|1 : AATTTACGGTGCAGGAATGTAATAAACTCATGACATACATTTAT-TT-T-------TTATATAAACC----TAGTGTAA---T--AACACTTCTGATT---GGTTGTTCGGTGTTTTGCAATATA-ACTCA-GATCTTGTGTGTAAAGT-TCCAAACTACTTTCT-GACTTAACCGAGTATATAAATGATGT-G-AATTTGTCAAGCT-AAAATGACATC-A---TTTCAAGACAG------TATGTCA-TACAACGAT-TGACGGAACC------TAA-TGTGACTG-A-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGT-------GATCTGTT-AAA--TAAATGGTATA---TAT-ACCA--C--TTTT-CTGTGATA-AGTGA-TAAAAA-GAA-TCTTACAATCTTGCTCATT-TATCATTTAATTCATTACA-A-AAAATGATAT------A--ATGCTTTGTG---------G----------------A------G----------CCTCACACAATACATTTTTGCAGC-A-T-CT-TTGCTAACTTCTTTCATAAATTC----AAT-----AATAAATGAGCACAAATGTAAGATCCTTCAT
gi|10 : ATGATTCATGGTGCAGTAGTGTAATAAACCCATGATATA------A-TT-T-------TGATATTAGCC----TAGTGTAA---T--GTCACTTGTGATT---CAAAGCTCTGTGTTTTCCA-CACA-ACTTG-GCTCTCATTTGTAAAAT-GCCAACCTATTTTCT-GACTTGCCGGAATATATAAATGACAT-C--------CAT--T-AAAATTTTGTC-A---TT--GAGAAGT------TACGTTA-CAa
gi|10 : catT---A----CAGGT-------GGTCCGTT-ATA--TAAATGGTAAA---T-T-A--A--CCATTTGCCTGAGCTA-TGTGA-T-AAAA-AAAACCTTACATTCATGCTCATT-TATTATTCAATGTATTTAA-ggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|11 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgtCAT-T-GATTTGTTATGGT-GAAATTACATT-A---TTTTAAGGTGT------TGCATCA-TACAATGAC-TGACAGTAAT------TTA-TATGCCCA---TTTTTTCTCG--TT------------------GAGGT-------GACTTG---GAACTTATATGGTTAA---TGT-AC-C--A--TTTTCTTGAGTTG-TGGTA-TAAAAA-GAA-TCTTTCATATGTGCTCATT-TATTAT--AA-CTA--AAA-T-CATA-AGTAAAAAATTA--AT-----------------GTTGTT-----------A------T----------GCTTGCACAAAA-----------TCA-T-TT-TTGCCAAATCAGTTAATAAATTC----AAT-----AATAAATGAGCACTCATGTAAGATCCTCTtgttgttg
gi|12 : GTGCCGGAGTGAAGTAAACGTATGA-ATA------A-TTAT-------TTATGTTAACC----TAGTGT-----T--TGCACTGCAATTT---CACCATTTGGTGTTTTTGG-TGTA-ACTCG-TCCCTTGTACATAGACC-ACCATGTTACTATTG-GTCTTACATGAAGATCTAAATGAC------ATTAATCA--GT-A---TGACATT-A---TT-----ATGT------TA-GTT--TA----AAC-TGATGGTAAC------TTA-TTTGTAAA-TTTTTTTTCTCA--TTC-T---TTAT---A----GAGTT-------GATCTGAA-AAA--TAAATGGTAAA---T
gi|13 : tttgtgttAATTTACGGTGCCGAAGTGTAATAAACCCGTG---T-------T-TT-T-------TTATATTACGC----TAGTGCAA---T--ATTACTTCCGAAT---GATCGAGCGGCGCCATACT-TACA-GCGTG-GCTCTTGTGTATTAAAT-GCGAGGCTATTTTCC-GACTTGTACGA----ACAGATGACGC-C-AATATGTCATGGT-AAAATGATATT-A---TTTTGAGACGT------TACGTCATTACGATGAC-TGACAGAAAC------TAA-TACG
gi|14 : tacaaTATGGCACAGGAGTGCAAGAAACCCATAGCCTA------T-T------------ATA-----C----TTGTTTAA---T--AACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCT-GCACTCGTAC-CAAAAT-ACTGAGCAGCTTTCC-GGCTTTCCCAAACATAT-----ACAT-T-GATTTGTCATGGT-AAAATAGCGAT-A---TTTtgc
gi|15 : aactatatatactaatcacaGTTTAATAAACCCGTGGCATA------T-TT-C-------TTATATTTACC----CAGTATAA---C--ATTACTACCAATT---CATCGCTGAGC---------------CTCG-GTTCTC-TCCG-AAAAT-GCCGAACTTCTTTCT-AACTTGCCGGAACATGTAAATGACGT-C-GATTTGTCAAGGT-AATATGTTGTT-A---TTTCGAGACGTCACTCGTACATCA-TACGATGAC-TCACGGAggtggaataacataacacactgac
gi|16 : ATGGCAAA---T-T-A--------TCGACCTAATTTG-TGTGA-T-AAAA-AAA-TCTTACATTCGAGCTCATA-TATTATTAAATTTATTAAA-CTCGT-TGACAA------A--ACTGTTAATATCCCAACAAG----------------G------G----------CATCGCATAATA-----------T-A-A-TG-TTCCCAGTTCTTCTAATAATTTT----AAT-----Acatg
gi|17 : ttctcagaagtcatacaggtcATAGTTGACGGTGCAGGAGTGTAATACACCCATGATATA------T-TT-T-------AGATATTAACC----TAGTGTAATACT--ATCAATTCCGATT---CACCGCTCGGTGTTTTCCG-TATA-ACTCG-ACTATAGTATG--------------TACTTT----------CCGAATATATAAATGGCGC-C-GGTTTGTCATtcatgttgaattttct
gi|18 : tcacT-GCTAAACTACTGTCC-GGCTTGCTCTAATATATAAATG------------GTCATGGT-AAAATGATGTTCA---TTTTGAGACCT------TACGTCA-TACGATGAT-TCAAGGAAAT------TAA-TATGGCTG-A-TATATTCTGA--TTT-G---TTAT---A----AAGGT-------AATATGTT-AAA--TAAATGATAAA---t
gi|19 : AATTTACGGTGTATGAGTGTAATAAACCTATGACATA--------TT-T-------TTATACTATTCTTTGTGGTGTA-------ATCATCGCCAATT---CATCGCTCGGTACTTTTCG-TA------CGTGTATTTGTCCGTAAAAT-ATCGAGC
gi|2 : atctcaaATTATTTACGGTGCAGTAATGTAATAAACCCATGACTTA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGTGTTTTCCG-TATA-ACTCG-GCTGTCGGTCATAATTT-GCCGAAGTAATTTCT-GACTTGTCCGAATATATAAATGACGT-C-GATTAGATATGGT-TAAATGACGTT-A---TTTTGAGACAT------ATCATCA-TACGATGAC-TCACAAAAAC------TAA-AACGTTCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCCTCT-AAA--TGAATGATAAA---TGTAA--A--C--TTTTCATGAGTTA-TGTGA-T-AAAACGAA-TCTTAAATTCATGCTCATT-CATTATTGCATTTACCAAA-CGCGTAGGGGAA------A--AT-----------------G----------------A------G----------CCTCGCAAAATA-----------T-A-T-AT-TTTCCAACTCGTTTAATAAATTC----AAT-----AATGAATAAGCACTCATGTAAGATCTTCTGT
gi|20 : G-ATTTGATTCTCA--TTCAC---TT-T---G----GATGT-------GATCTGTT-AGA--TGAATGGTAAA---TGT-A--C--A--ATTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTg
gi|21 : tatttacatattaacctagtgtaacatgaagatgttATAGTTTACGGTGCAGGAGTGTAACAAAACCATGACATA------T-TT-TTTTTTTATTATA-TAATC----TA-TA-AA---TAAATGAATTCTGATT---
gi|22 : cGTATAATA-----------T-A-T-CT-TTGCAAACTCGTTGAATGAATTCCATTAATTTCAAAACAAACGAGGACTTATGTAATATC
gi|23 : ATGATTGACAATACAGGAGTGTTATACAGCCATGCCATG------T-TT-T-------
gi|24 : ttaccgcATAATTCATGGTGAAGGAGTGTAATAAAC---TAACATA------TATT-T-------ACATATTAACC----TAGTGTAA---C--Aaattggctaagtg
gi|25 : cTGTGATAAACCTATGACAT---------TT-T-------TTATATTAACC----AAATATAA---T--AT
gi|26 : acactattctagtgcatCTCGTTCTATAAATTC----AAT-----AATTATTAA--ACTCGTGAAAGATCTTCTAT
gi|28 : TTCAATAAATTC----AAT-----AATAAACAAGCGCTCCTGTAatata
gi|3 : TTGGTGTTTTCCG-TCTA-AGTCG-GCTCTCGTACGTAAATT-GCCGAATTTCTTTCT-TACTTGCCCTAATATATAAAAGACGC-C-GATTTGTCATGGT-TAAATGACGTT-ATTTTTTTTATATAT------TACGTCA-TATGA-AAC-TGAT-----C------TGA-----CCTATATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAA--TATATTGTAAAATCTAA-A--A--A--ATTGCCTGAGTTA-GGTAT-T-GAAA-CAATTCTTACATTCGTGCTTATT-TATTATTGAATTAATTAAATT-CGTTGAGAAA------A--AT-----------------GATAAAATACTCGGCAAA------G----------CCCCGCTTAATA-----------T-A-TATT-TTCCCAAATCGTTTAATAAATTC----AAT-----AATAAAGAAGCACTCGTGTAAGATGTT
gi|4 : AGTTTACGATGCAGTAGTATTATGATCCCATGACATA------T-TT-T-------AGACAATAGCC-----GGTGTAA---T--ATCACTTCCGATT---AGTCCTTTGGTGTTTTCCG-CAAA-ATTTG-GCCCTCATGCATAAACT-GTCGAACTATTTCCA-GAATTTCCCAAACA-A-GAATGAC-T-CGGATTTGTCGT-GT-AAAATGTATTT-A---TTTGGAGAAGT------TTCGTCA-TACGACGACTTGA-AGAAAC------CAG-TATGTCCG-A---TTTACTCGCCTTC-C---TTAT---G----TAGGT-------GATAT-TT-GA--------GGTA-------T-C--A-----TTTTCCTGA-TCACTCAGA-T-AAAA--AA-TCT----TTCGT-TTCATT-TGTAATTGAATTTATAAAA-C-TAT-TGGCCA------GTTAT-----------------G----------------ATATATTGTTCGGCACGTCCACACAAAATG-----------T-A-T-GA-TTGCCAACTTGTTTAATCAATTC----AAT-----GAC-AATGTGAATTTAAGCAAGATATTCTATgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|5 : ATATTTTTTGTTGCAGGAGTGTAATAAACTCATGAGAT-------T-TT-T-------TTATATTAACC----TGATGTAT---T--ATCACTTCTGATT---C----------------CG-CATA-ACTCG-GATCTTGTAAGTAAAAT-ACCAAACTACTTTCG-GACTTGCCTGTATATATAAATGACAT-C-GATTTGTCATTGT-AAAATGACGTT-A---TTTTTAGCTGG------TACGTCA-TATGATGGC-TAATGGAAAC------TAA-TATTCTTG-A-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGT-------GATCTGTTAAAA--TAAGTGGTAAC---TGT-AC-C--G--TTTTCCTGAGTTA-TGTGT-T-AAAT-GA
gi|5 : gtatcac--AT-----------------A----------------A------A----------CCTCGCATAATA-----------T-A-T-CTATTGCAAACTTGTTCAATGAATTC----AAT-----AATAAACAAGCACTCTTGTAAGATtataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|6 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgatG-TA-A-ACTCG-ACCCT--TA--TAAAA--------CTATTTTAA-GACTTTTCCAAACATAGAAATTAATTAT-AATTTATCGTGGA-AAAATGACGTT-T---TTTTAATACGT------TTCGTCA-TACGACGAC------------------AG-CATGCCCG-A-TTTACTCTTG--TCC-C---TTAT---G----AATAT-------GATATGTA-AAA--TA--------------T-A--A--A--TTTTC--GAGTCG-TGTGA-T-AA----AA-TC-TACATTCGTGCTCATT-TATTATTGAATTCATTAAA-C-TATTTGCCAAT-----T--AT-----------------G----------------AGAACG-G----------CTTCGCAAAATA-----------T-A-T-AT-TTGCAAACTTGTTTAATAA-------------------AAATGAGCATTCATGCAACATCTTCTATtcacta
gi|7 : attttcgctagtGTACG-AAAATAGCCAAAGTACTTTTCTGACTTGCCCAAGTATATAAATGACGT-C-GATTTTTCAGGGT-TAGATGACGTT-A---TTT--AAA-GT------TACGTCA-TATGATGAC-TCACGGAAACAAAATTCAA-TACGCCCG-A-TTTTTTCTCT--TTC-C---TTAC---A----GAGAA-------GATCTGTT-TAA--TAAATGGTAAA---TGT-A--ATTT--TTTTCACGAGCTG-TGTCATT-AAAC-AAA-TCTTACATTCGTGCT-ATTATATCATAGAATTTAATAAA-C----TTGGCA-----------------------------G----------------A------G----------CCTCGCATAATA-----------T-ATT-TT-TTTCCAACTCGTTTAGTAAATTC----AAT-----AATAAATAAGCAATCAGGTCAGATCCTTTGTttatcatctaattgttatttatacattagcttcactca
gi|8 : ATAATTTACAGTGCCTGTGTGTAATAAACCCATGACAT---------TT-T-------TGAACTTATCC----TAGTGTAA---T--ATCACTACTGATT---CATCATACAGCGTTTTCCA-TATA-ATTCA-TTGCTTGTACATAAAAT-GCCGAGCTGCTTTCA-GACATTTCTTAACATATAAATGATGT-T-GATTTGTCATTGTGAAAATGGCTTT-A---TTTTCAGATG-------TA-------ACAATGAC-TGGCATAAAC-------A---------G-ATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGT-------GATCTGAA-AAA--TAATTGATAAA---AGT-T--C--C--ATTTACTGAGTT--TGTGA-T-AAAA-GAA-TCTTACATTTGTGTTAATT-TATTATTGata
gi|9 : cAAATTAAGATGCAGTAGTGTAATAAATCCATGACATG------T-TT-T-------AGATATTAACC----TAGTGTAG---T--ATCACTTCTGATA---CATTG-TTGATGTTTTCTG-TTTATTTTCG-AGTCTCATACGTAAAAT-ACAGAACTATTTTCC-ACCTTGCCCGAATTTATCATTGATGG-T-GAATTGTCATAGT--AAATGATTTT-G---TTTCTAGACTT------TACGCCA-TGTGACGAA-TGATAGAAA-------TAATTACGTCTG-A-TTTATTCTCA--TTC-C---TTCT---A----GAAGT-------GATCTGAA-AAA--TAAGGGGTAAA---TGT-A--A-----------TGA---A-TGTGA-T-GAAA-CAAGTTTTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1 22222222 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111
lowQualScore : 333333333 2 7777777 0 5555 444 33 555 2 2 0 2 2 2 2 1 0 1 2 66 44444 1 2 2 444 55 2 777777 2 4 2 0 33 888888 3333 1 0 3 9 1 77 3 555 77777777 9999999 444 33 55555 3 99999999 0 3 3 6 66 0 4 1 6666666666666666666666666666666666666666666666666666666666666666666666666666 1 99999999999 4 4 55 4 7777 88888 2
lowQualScore : ......... . ....... . .... ... .. ... . . . . . . . . . . . .. ..... . . . ... .. . ...... . . . . .. ...... .... . . . . . .. . ... ........ ....... ... .. ..... . ........ . . . . .. . . . ............................................................................ . ........... . . .. . .... ..... .
lowQualScore : 222222222 4 6666666 9 3333 444 44 000 6 1 6 7 9 7 7 4 1 1 4 99 33333 9 5 5 444 33 0 777777 7 5 9 1 99 888888 2222 6 8 1 2 0 33 1 444 00000000 3333333 111 99 00000 1 11111111 8 1 1 2 44 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777 0 00000000000 0 0 00 0 1111 33333 5
consensus : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
Reference ( family-2623 ) : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
gi|1 : AATTTACGGTGCAGGAATGTAATAAACTCATGACATACATTTAT-TT-T-------TTATATAAACC----TAGTGTAA---T--AACACTTCTGATT---GGTTGTTCGGTGTTTTGCAATATA-ACTCA-GATCTTGTGTGTAAAGT-TCCAAACTACTTTCT-GACTTAACCGAGTATATAAATGATGT-G-AATTTGTCAAGCT-AAAATGACATC-A---TTTCAAGACAG------TATGTCA-TACAACGAT-TGACGGAACC------TAA-TGTGACTG-A-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGT-------GATCTGTT-AAA--TAAATGGTATA---TAT-ACCA--C--TTTT-CTGTGATA-AGTGA-TAAAAA-GAA-TCTTACAATCTTGCTCATT-TATCATTTAATTCATTACA-A-AAAATGATAT------A--ATGCTTTGTG---------G----------------A------G----------CCTCACACAATACATTTTTGCAGC-A-T-CT-TTGCTAACTTCTTTCATAAATTC----AAT-----AATAAATGAGCACAAATGTAAGATCCTTCAT
gi|10 : ATGATTCATGGTGCAGTAGTGTAATAAACCCATGATATA------A-TT-T-------TGATATTAGCC----TAGTGTAA---T--GTCACTTGTGATT---CAAAGCTCTGTGTTTTCCA-CACA-ACTTG-GCTCTCATTTGTAAAAT-GCCAACCTATTTTCT-GACTTGCCGGAATATATAAATGACAT-C--------CAT--T-AAAATTTTGTC-A---TT--GAGAAGT------TACGTTA-CAa
gi|10 : catT---A----CAGGT-------GGTCCGTT-ATA--TAAATGGTAAA---T-T-A--A--CCATTTGCCTGAGCTA-TGTGA-T-AAAA-AAAACCTTACATTCATGCTCATT-TATTATTCAATGTATTTAA-ggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|11 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgtCAT-T-GATTTGTTATGGT-GAAATTACATT-A---TTTTAAGGTGT------TGCATCA-TACAATGAC-TGACAGTAAT------TTA-TATGCCCA---TTTTTTCTCG--TT------------------GAGGT-------GACTTG---GAACTTATATGGTTAA---TGT-AC-C--A--TTTTCTTGAGTTG-TGGTA-TAAAAA-GAA-TCTTTCATATGTGCTCATT-TATTAT--AA-CTA--AAA-T-CATA-AGTAAAAAATTA--AT-----------------GTTGTT-----------A------T----------GCTTGCACAAAA-----------TCA-T-TT-TTGCCAAATCAGTTAATAAATTC----AAT-----AATAAATGAGCACTCATGTAAGATCCTCTtgttgttg
gi|12 : GTGCCGGAGTGAAGTAAACGTATGA-ATA------A-TTAT-------TTATGTTAACC----TAGTGT-----T--TGCACTGCAATTT---CACCATTTGGTGTTTTTGG-TGTA-ACTCG-TCCCTTGTACATAGACC-ACCATGTTACTATTG-GTCTTACATGAAGATCTAAATGAC------ATTAATCA--GT-A---TGACATT-A---TT-----ATGT------TA-GTT--TA----AAC-TGATGGTAAC------TTA-TTTGTAAA-TTTTTTTTCTCA--TTC-T---TTAT---A----GAGTT-------GATCTGAA-AAA--TAAATGGTAAA---T
gi|13 : tttgtgttAATTTACGGTGCCGAAGTGTAATAAACCCGTG---T-------T-TT-T-------TTATATTACGC----TAGTGCAA---T--ATTACTTCCGAAT---GATCGAGCGGCGCCATACT-TACA-GCGTG-GCTCTTGTGTATTAAAT-GCGAGGCTATTTTCC-GACTTGTACGA----ACAGATGACGC-C-AATATGTCATGGT-AAAATGATATT-A---TTTTGAGACGT------TACGTCATTACGATGAC-TGACAGAAAC------TAA-TACG
gi|14 : tacaaTATGGCACAGGAGTGCAAGAAACCCATAGCCTA------T-T------------ATA-----C----TTGTTTAA---T--AACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCT-GCACTCGTAC-CAAAAT-ACTGAGCAGCTTTCC-GGCTTTCCCAAACATAT-----ACAT-T-GATTTGTCATGGT-AAAATAGCGAT-A---TTTtgc
gi|15 : aactatatatactaatcacaGTTTAATAAACCCGTGGCATA------T-TT-C-------TTATATTTACC----CAGTATAA---C--ATTACTACCAATT---CATCGCTGAGC---------------CTCG-GTTCTC-TCCG-AAAAT-GCCGAACTTCTTTCT-AACTTGCCGGAACATGTAAATGACGT-C-GATTTGTCAAGGT-AATATGTTGTT-A---TTTCGAGACGTCACTCGTACATCA-TACGATGAC-TCACGGAggtggaataacataacacactgac
gi|16 : ATGGCAAA---T-T-A--------TCGACCTAATTTG-TGTGA-T-AAAA-AAA-TCTTACATTCGAGCTCATA-TATTATTAAATTTATTAAA-CTCGT-TGACAA------A--ACTGTTAATATCCCAACAAG----------------G------G----------CATCGCATAATA-----------T-A-A-TG-TTCCCAGTTCTTCTAATAATTTT----AAT-----Acatg
gi|17 : ttctcagaagtcatacaggtcATAGTTGACGGTGCAGGAGTGTAATACACCCATGATATA------T-TT-T-------AGATATTAACC----TAGTGTAATACT--ATCAATTCCGATT---CACCGCTCGGTGTTTTCCG-TATA-ACTCG-ACTATAGTATG--------------TACTTT----------CCGAATATATAAATGGCGC-C-GGTTTGTCATtcatgttgaattttct
gi|18 : tcacT-GCTAAACTACTGTCC-GGCTTGCTCTAATATATAAATG------------GTCATGGT-AAAATGATGTTCA---TTTTGAGACCT------TACGTCA-TACGATGAT-TCAAGGAAAT------TAA-TATGGCTG-A-TATATTCTGA--TTT-G---TTAT---A----AAGGT-------AATATGTT-AAA--TAAATGATAAA---t
gi|19 : AATTTACGGTGTATGAGTGTAATAAACCTATGACATA--------TT-T-------TTATACTATTCTTTGTGGTGTA-------ATCATCGCCAATT---CATCGCTCGGTACTTTTCG-TA------CGTGTATTTGTCCGTAAAAT-ATCGAGC
gi|2 : atctcaaATTATTTACGGTGCAGTAATGTAATAAACCCATGACTTA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGTGTTTTCCG-TATA-ACTCG-GCTGTCGGTCATAATTT-GCCGAAGTAATTTCT-GACTTGTCCGAATATATAAATGACGT-C-GATTAGATATGGT-TAAATGACGTT-A---TTTTGAGACAT------ATCATCA-TACGATGAC-TCACAAAAAC------TAA-AACGTTCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCCTCT-AAA--TGAATGATAAA---TGTAA--A--C--TTTTCATGAGTTA-TGTGA-T-AAAACGAA-TCTTAAATTCATGCTCATT-CATTATTGCATTTACCAAA-CGCGTAGGGGAA------A--AT-----------------G----------------A------G----------CCTCGCAAAATA-----------T-A-T-AT-TTTCCAACTCGTTTAATAAATTC----AAT-----AATGAATAAGCACTCATGTAAGATCTTCTGT
gi|20 : G-ATTTGATTCTCA--TTCAC---TT-T---G----GATGT-------GATCTGTT-AGA--TGAATGGTAAA---TGT-A--C--A--ATTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTg
gi|21 : tatttacatattaacctagtgtaacatgaagatgttATAGTTTACGGTGCAGGAGTGTAACAAAACCATGACATA------T-TT-TTTTTTTATTATA-TAATC----TA-TA-AA---TAAATGAATTCTGATT---
gi|22 : cGTATAATA-----------T-A-T-CT-TTGCAAACTCGTTGAATGAATTCCATTAATTTCAAAACAAACGAGGACTTATGTAATATC
gi|23 : ATGATTGACAATACAGGAGTGTTATACAGCCATGCCATG------T-TT-T-------
gi|24 : ttaccgcATAATTCATGGTGAAGGAGTGTAATAAAC---TAACATA------TATT-T-------ACATATTAACC----TAGTGTAA---C--Aaattggctaagtg
gi|25 : cTGTGATAAACCTATGACAT---------TT-T-------TTATATTAACC----AAATATAA---T--AT
gi|26 : acactattctagtgcatCTCGTTCTATAAATTC----AAT-----AATTATTAA--ACTCGTGAAAGATCTTCTAT
gi|28 : TTCAATAAATTC----AAT-----AATAAACAAGCGCTCCTGTAatata
gi|3 : TTGGTGTTTTCCG-TCTA-AGTCG-GCTCTCGTACGTAAATT-GCCGAATTTCTTTCT-TACTTGCCCTAATATATAAAAGACGC-C-GATTTGTCATGGT-TAAATGACGTT-ATTTTTTTTATATAT------TACGTCA-TATGA-AAC-TGAT-----C------TGA-----CCTATATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAA--TATATTGTAAAATCTAA-A--A--A--ATTGCCTGAGTTA-GGTAT-T-GAAA-CAATTCTTACATTCGTGCTTATT-TATTATTGAATTAATTAAATT-CGTTGAGAAA------A--AT-----------------GATAAAATACTCGGCAAA------G----------CCCCGCTTAATA-----------T-A-TATT-TTCCCAAATCGTTTAATAAATTC----AAT-----AATAAAGAAGCACTCGTGTAAGATGTT
gi|4 : AGTTTACGATGCAGTAGTATTATGATCCCATGACATA------T-TT-T-------AGACAATAGCC-----GGTGTAA---T--ATCACTTCCGATT---AGTCCTTTGGTGTTTTCCG-CAAA-ATTTG-GCCCTCATGCATAAACT-GTCGAACTATTTCCA-GAATTTCCCAAACA-A-GAATGAC-T-CGGATTTGTCGT-GT-AAAATGTATTT-A---TTTGGAGAAGT------TTCGTCA-TACGACGACTTGA-AGAAAC------CAG-TATGTCCG-A---TTTACTCGCCTTC-C---TTAT---G----TAGGT-------GATAT-TT-GA--------GGTA-------T-C--A-----TTTTCCTGA-TCACTCAGA-T-AAAA--AA-TCT----TTCGT-TTCATT-TGTAATTGAATTTATAAAA-C-TAT-TGGCCA------GTTAT-----------------G----------------ATATATTGTTCGGCACGTCCACACAAAATG-----------T-A-T-GA-TTGCCAACTTGTTTAATCAATTC----AAT-----GAC-AATGTGAATTTAAGCAAGATATTCTATgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|5 : ATATTTTTTGTTGCAGGAGTGTAATAAACTCATGAGAT-------T-TT-T-------TTATATTAACC----TGATGTAT---T--ATCACTTCTGATT---C----------------CG-CATA-ACTCG-GATCTTGTAAGTAAAAT-ACCAAACTACTTTCG-GACTTGCCTGTATATATAAATGACAT-C-GATTTGTCATTGT-AAAATGACGTT-A---TTTTTAGCTGG------TACGTCA-TATGATGGC-TAATGGAAAC------TAA-TATTCTTG-A-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGT-------GATCTGTTAAAA--TAAGTGGTAAC---TGT-AC-C--G--TTTTCCTGAGTTA-TGTGT-T-AAAT-GA
gi|5 : gtatcac--AT-----------------A----------------A------A----------CCTCGCATAATA-----------T-A-T-CTATTGCAAACTTGTTCAATGAATTC----AAT-----AATAAACAAGCACTCTTGTAAGATtataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|6 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgatG-TA-A-ACTCG-ACCCT--TA--TAAAA--------CTATTTTAA-GACTTTTCCAAACATAGAAATTAATTAT-AATTTATCGTGGA-AAAATGACGTT-T---TTTTAATACGT------TTCGTCA-TACGACGAC------------------AG-CATGCCCG-A-TTTACTCTTG--TCC-C---TTAT---G----AATAT-------GATATGTA-AAA--TA--------------T-A--A--A--TTTTC--GAGTCG-TGTGA-T-AA----AA-TC-TACATTCGTGCTCATT-TATTATTGAATTCATTAAA-C-TATTTGCCAAT-----T--AT-----------------G----------------AGAACG-G----------CTTCGCAAAATA-----------T-A-T-AT-TTGCAAACTTGTTTAATAA-------------------AAATGAGCATTCATGCAACATCTTCTATtcacta
gi|7 : attttcgctagtGTACG-AAAATAGCCAAAGTACTTTTCTGACTTGCCCAAGTATATAAATGACGT-C-GATTTTTCAGGGT-TAGATGACGTT-A---TTT--AAA-GT------TACGTCA-TATGATGAC-TCACGGAAACAAAATTCAA-TACGCCCG-A-TTTTTTCTCT--TTC-C---TTAC---A----GAGAA-------GATCTGTT-TAA--TAAATGGTAAA---TGT-A--ATTT--TTTTCACGAGCTG-TGTCATT-AAAC-AAA-TCTTACATTCGTGCT-ATTATATCATAGAATTTAATAAA-C----TTGGCA-----------------------------G----------------A------G----------CCTCGCATAATA-----------T-ATT-TT-TTTCCAACTCGTTTAGTAAATTC----AAT-----AATAAATAAGCAATCAGGTCAGATCCTTTGTttatcatctaattgttatttatacattagcttcactca
gi|8 : ATAATTTACAGTGCCTGTGTGTAATAAACCCATGACAT---------TT-T-------TGAACTTATCC----TAGTGTAA---T--ATCACTACTGATT---CATCATACAGCGTTTTCCA-TATA-ATTCA-TTGCTTGTACATAAAAT-GCCGAGCTGCTTTCA-GACATTTCTTAACATATAAATGATGT-T-GATTTGTCATTGTGAAAATGGCTTT-A---TTTTCAGATG-------TA-------ACAATGAC-TGGCATAAAC-------A---------G-ATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGT-------GATCTGAA-AAA--TAATTGATAAA---AGT-T--C--C--ATTTACTGAGTT--TGTGA-T-AAAA-GAA-TCTTACATTTGTGTTAATT-TATTATTGata
gi|9 : cAAATTAAGATGCAGTAGTGTAATAAATCCATGACATG------T-TT-T-------AGATATTAACC----TAGTGTAG---T--ATCACTTCTGATA---CATTG-TTGATGTTTTCTG-TTTATTTTCG-AGTCTCATACGTAAAAT-ACAGAACTATTTTCC-ACCTTGCCCGAATTTATCATTGATGG-T-GAATTGTCATAGT--AAATGATTTT-G---TTTCTAGACTT------TACGCCA-TGTGACGAA-TGATAGAAA-------TAATTACGTCTG-A-TTTATTCTCA--TTC-C---TTCT---A----GAAGT-------GATCTGAA-AAA--TAAGGGGTAAA---TGT-A--A-----------TGA---A-TGTGA-T-GAAA-CAAGTTTTACA
blockSeqs : ATA A TTTTTTA TTTG TAC AA TGT C T . C T T C T A CT TTAT G G C TTT TA A CACTCG T T T CA AAAATT TTAC C T T T CC A . ACTCT GATCATG TTA CT ATCTA A ACCA C T A CG A A T CTCGTTGACAAAACTGTTAATATCCCAACAAGGG C . C T AT A CATT TTCAA T
blockSeqs : AA . . . . . . T T . T . . T T . T ATC G . . . TG T . . T . TG . TAT T . T T T . . A . TT . TG . ATTT . . . A T . T TTCGTTGAGAAAAATGATAAAATACTCGGCAAAG T . . . T . . . T
blockSeqs : AA . . . . . . A C . C . . T T . G ATT G . . . CG T . . T . CA . TTT G . T A . . . A . AA . TG . CCA . . . G G . C CTATTGGCCAGTTATGATATATTGTTCGGCACGT A . . . T . . . C
blockSeqs : AT . . . . . . C C . T . . C C . C GCC G . . . TG C . . T . CG . TAC T . T T . . . A . TT . TG . CCG . . . A . . T TCATAAGTAAAAAATTAATGTTGTTAT T . . . A . . . T
blockSeqs : AT . . . . . . C C . T . . C T . C ATT G . . . TG C . . T . AG . TAT C . T A . . . A . CT . TG . AC . . . G . . T CTATTTGCCAATTATGAGAACGG T . . . C . . . C
blockSeqs : AT . . . . . . C T . T . . A T . T GTC G . . . TT C . . C . CA . AAC T . . T . . . G . TT . TG . CA . . . C . . T CGCGTAGGGGAAAATGAG A . . . G . . . G
blockSeqs : AT . . . . . . C T . T . . T T . C GCC G . . . GG C . . T . TG . TAT C . . T . . . A . TT . AG . AA . . . G . . A CTTGGCAGAG T . . . C . . . T
blockSeqs : AT . . . . . . C T . A . . C T . T GTC T . . . TT T . . C . CG . TAT C . . T . . . G . TT . TG . AA . . . A . . . A . . . A . . . C
blockSeqs : GT . . . . . . T T . T . . C T . T GCC G . . . TA A . . T . CA . CAT C . . A . . . G . TA . T . CC . . . G . . T . . . T . . . T
blockSeqs : AT . . . . . . T T . T . . C T . A TCG G . . . TC T . . T . TA . TAC T . . T . . . A . TT . T . A . . . C . . . T
blockSeqs : GT . . . . . . . C . T . . T T . G ATC T . . . CT C . . C . T . . . . . T . . . A . AA . . . A . . . . . . .
blockSeqs : T . . . . . . . T . . . . T T . A GTC A . . . G T . . . . A . . . . A . . . A . AA . . . . . . . .
blockSeqs : A . . . . . . . . . . . C . . A GTT . . . . . C . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . C GGT . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AT******* *** A******* CA****** ***********
originalCons : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-A--A--N--TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
finalCons : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATAT-------TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTATA-------GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGT-ACA------TTTTCCTGAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1 222222 1 3333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111
lowQualScore : 333333333 2 7777777 0 5555 444 33 555 2 2 0 2 2 2 2 1 0 1 2 66 44444 1 2 2 444 55 2 777777 2 4 2 0 33 888888 3333 1 0 3 9 1 77 3 555 77777777 9999999 444 33 444 111111 55 0 555 3 3 6 66 0 4 1 6666666666666666666666666666666666666666666666666666666666666666666666666666 1 99999999999 4 4 55 4 7777 88888 2
lowQualScore : ......... . ....... . .... ... .. ... . . . . . . . . . . . .. ..... . . . ... .. . ...... . . . . .. ...... .... . . . . . .. . ... ........ ....... ... .. ... ...... .. . ... . . . .. . . . ............................................................................ . ........... . . .. . .... ..... .
lowQualScore : 222222222 4 6666666 9 3333 444 44 000 6 1 6 7 9 7 7 4 1 1 4 99 33333 9 5 5 444 33 0 777777 7 5 9 1 99 888888 2222 6 8 1 2 0 33 1 444 00000000 3333333 111 99 777 222222 00 2 444 1 1 2 44 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777 0 00000000000 0 0 00 0 1111 33333 5
consensus : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGTA--CA-TTTTCCT---GAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
Reference ( family-2623 ) : ATAATTTACGGTGCAGGAGTGTAATAAACCCATGACATA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGCGTTTTCCG-TATA-ACTCG-GCTCTCGTACGTAAAAT-GCCGAACTACTTTCC-GACTTGCCCGAATATATAAATGACGT-C-GATTTGTCATGGT-AAAATGACGTT-A---TTTTGAGACGT------TACGTCA-TACGACGAC-TGACGGAAAC------TAA-TACGCCCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCTGTT-AAA--TAAATGGTAAA---TGTA--CA-TTTTCCT---GAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTCGTGCTCATT-TATTATTGAATTTATTAAA-C-CGTNTGGCAA------A--AT-----------------G----------------A------G----------CCTCGCANAATA-----------T-A-T-NT-TTGCCAACTCGTTTAATAAATTC----AAT-----AATAAACGAGCACTCATGTAAGATCTTCTAT
gi|1 : AATTTACGGTGCAGGAATGTAATAAACTCATGACATACATTTAT-TT-T-------TTATATAAACC----TAGTGTAA---T--AACACTTCTGATT---GGTTGTTCGGTGTTTTGCAATATA-ACTCA-GATCTTGTGTGTAAAGT-TCCAAACTACTTTCT-GACTTAACCGAGTATATAAATGATGT-G-AATTTGTCAAGCT-AAAATGACATC-A---TTTCAAGACAG------TATGTCA-TACAACGAT-TGACGGAACC------TAA-TGTGACTG-A-TTTATTCGTG--TTA-CTAATTATAAAA----AAGGT-------GATCTGTT-AAA--TAAATGGTATA---TATAC-CA-CTTTTCT---GTGATA-AGTGA-TAAAAA-GAA-TCTTACAATCTTGCTCATT-TATCATTTAATTCATTACA-A-AAAATGATAT------A--ATGCTTTGTG---------G----------------A------G----------CCTCACACAATACATTTTTGCAGC-A-T-CT-TTGCTAACTTCTTTCATAAATTC----AAT-----AATAAATGAGCACAAATGTAAGATCCTTCAT
gi|10 : ATGATTCATGGTGCAGTAGTGTAATAAACCCATGATATA------A-TT-T-------TGATATTAGCC----TAGTGTAA---T--GTCACTTGTGATT---CAAAGCTCTGTGTTTTCCA-CACA-ACTTG-GCTCTCATTTGTAAAAT-GCCAACCTATTTTCT-GACTTGCCGGAATATATAAATGACAT-C--------CAT--T-AAAATTTTGTC-A---TT--GAGAAGT------TACGTTA-CAa
gi|10 : catT---A----CAGGT-------GGTCCGTT-ATA--TAAATGGTAAA---T-TAACCA-TTTGCCT---GAGCTA-TGTGA-T-AAAA-AAAACCTTACATTCATGCTCATT-TATTATTCAATGTATTTAA-ggtggtccgttatataaatggtaaattaaccatttgcctgagctatgtgataaaaaaaaccttacattcatgctcatttattattcaatgtatttaatgttgttg
gi|11 : catatgattcatggtgcagtagtgtaataaacccatgatataattttgatattagcctagtgtaatgtcacttgtgattcaaagctctgtgttttccacacaacttggctctcatttgtaaaatgccaacctattttctgacttgccggaatatataaatgacatccattaaaattttgtcattgagaagttacgtCAT-T-GATTTGTTATGGT-GAAATTACATT-A---TTTTAAGGTGT------TGCATCA-TACAATGAC-TGACAGTAAT------TTA-TATGCCCA---TTTTTTCTCG--TT------------------GAGGT-------GACTTG---GAACTTATATGGTTAA---TGTAC-CA-TTTTCTT---GAGTTG-TGGTA-TAAAAA-GAA-TCTTTCATATGTGCTCATT-TATTAT--AA-CTA--AAA-T-CATA-AGTAAAAAATTA--AT-----------------GTTGTT-----------A------T----------GCTTGCACAAAA-----------TCA-T-TT-TTGCCAAATCAGTTAATAAATTC----AAT-----AATAAATGAGCACTCATGTAAGATCCTCTtgttgttg
gi|12 : GTGCCGGAGTGAAGTAAACGTATGA-ATA------A-TTAT-------TTATGTTAACC----TAGTGT-----T--TGCACTGCAATTT---CACCATTTGGTGTTTTTGG-TGTA-ACTCG-TCCCTTGTACATAGACC-ACCATGTTACTATTG-GTCTTACATGAAGATCTAAATGAC------ATTAATCA--GT-A---TGACATT-A---TT-----ATGT------TA-GTT--TA----AAC-TGATGGTAAC------TTA-TTTGTAAA-TTTTTTTTCTCA--TTC-T---TTAT---A----GAGTT-------GATCTGAA-AAA--TAAATGGTAAA---T
gi|13 : tttgtgttAATTTACGGTGCCGAAGTGTAATAAACCCGTG---T-------T-TT-T-------TTATATTACGC----TAGTGCAA---T--ATTACTTCCGAAT---GATCGAGCGGCGCCATACT-TACA-GCGTG-GCTCTTGTGTATTAAAT-GCGAGGCTATTTTCC-GACTTGTACGA----ACAGATGACGC-C-AATATGTCATGGT-AAAATGATATT-A---TTTTGAGACGT------TACGTCATTACGATGAC-TGACAGAAAC------TAA-TACG
gi|14 : tacaaTATGGCACAGGAGTGCAAGAAACCCATAGCCTA------T-T------------ATA-----C----TTGTTTAA---T--AACTCTACTAATTTGTCATTGCTTGGCTTTTATCG-TATA-ACTCT-GCACTCGTAC-CAAAAT-ACTGAGCAGCTTTCC-GGCTTTCCCAAACATAT-----ACAT-T-GATTTGTCATGGT-AAAATAGCGAT-A---TTTtgc
gi|15 : aactatatatactaatcacaGTTTAATAAACCCGTGGCATA------T-TT-C-------TTATATTTACC----CAGTATAA---C--ATTACTACCAATT---CATCGCTGAGC---------------CTCG-GTTCTC-TCCG-AAAAT-GCCGAACTTCTTTCT-AACTTGCCGGAACATGTAAATGACGT-C-GATTTGTCAAGGT-AATATGTTGTT-A---TTTCGAGACGTCACTCGTACATCA-TACGATGAC-TCACGGAggtggaataacataacacactgac
gi|16 : ATGGCAAA---T-----TA-TCGACCT---AATTTG-TGTGA-T-AAAA-AAA-TCTTACATTCGAGCTCATA-TATTATTAAATTTATTAAA-CTCGT-TGACAA------A--ACTGTTAATATCCCAACAAG----------------G------G----------CATCGCATAATA-----------T-A-A-TG-TTCCCAGTTCTTCTAATAATTTT----AAT-----Acatg
gi|17 : ttctcagaagtcatacaggtcATAGTTGACGGTGCAGGAGTGTAATACACCCATGATATA------T-TT-T-------AGATATTAACC----TAGTGTAATACT--ATCAATTCCGATT---CACCGCTCGGTGTTTTCCG-TATA-ACTCG-ACTATAGTATG--------------TACTTT----------CCGAATATATAAATGGCGC-C-GGTTTGTCATtcatgttgaattttct
gi|18 : tcacT-GCTAAACTACTGTCC-GGCTTGCTCTAATATATAAATG------------GTCATGGT-AAAATGATGTTCA---TTTTGAGACCT------TACGTCA-TACGATGAT-TCAAGGAAAT------TAA-TATGGCTG-A-TATATTCTGA--TTT-G---TTAT---A----AAGGT-------AATATGTT-AAA--TAAATGATAAA---t
gi|19 : AATTTACGGTGTATGAGTGTAATAAACCTATGACATA--------TT-T-------TTATACTATTCTTTGTGGTGTA-------ATCATCGCCAATT---CATCGCTCGGTACTTTTCG-TA------CGTGTATTTGTCCGTAAAAT-ATCGAGC
gi|2 : atctcaaATTATTTACGGTGCAGTAATGTAATAAACCCATGACTTA------T-TT-T-------TTATATTAACC----TAGTGTAA---T--ATCACTTCCGATT---CATCGCTCGGTGTTTTCCG-TATA-ACTCG-GCTGTCGGTCATAATTT-GCCGAAGTAATTTCT-GACTTGTCCGAATATATAAATGACGT-C-GATTAGATATGGT-TAAATGACGTT-A---TTTTGAGACAT------ATCATCA-TACGATGAC-TCACAAAAAC------TAA-AACGTTCG-ATTTTTTTCTCG--TTC-C---TTAT---A----GAGGT-------GATCCTCT-AAA--TGAATGATAAA---TGTA--AACTTTTCAT---GAGTTA-TGTGA-T-AAAACGAA-TCTTAAATTCATGCTCATT-CATTATTGCATTTACCAAA-CGCGTAGGGGAA------A--AT-----------------G----------------A------G----------CCTCGCAAAATA-----------T-A-T-AT-TTTCCAACTCGTTTAATAAATTC----AAT-----AATGAATAAGCACTCATGTAAGATCTTCTGT
gi|20 : G-ATTTGATTCTCA--TTCAC---TT-T---G----GATGT-------GATCTGTT-AGA--TGAATGGTAAA---TGTA--CA-ATTTCCT---GAGTTA-TGTGA-T-AAAA-GAA-TCTTACATTg
gi|21 : tatttacatattaacctagtgtaacatgaagatgttATAGTTTACGGTGCAGGAGTGTAACAAAACCATGACATA------T-TT-TTTTTTTATTATA-TAATC----TA-TA-AA---TAAATGAATTCTGATT---
gi|22 : cGTATAATA-----------T-A-T-CT-TTGCAAACTCGTTGAATGAATTCCATTAATTTCAAAACAAACGAGGACTTATGTAATATC
gi|23 : ATGATTGACAATACAGGAGTGTTATACAGCCATGCCATG------T-TT-T-------
gi|24 : ttaccgcATAATTCATGGTGAAGGAGTGTAATAAAC---TAACATA------TATT-T-------ACATATTAACC----TAGTGTAA---C--Aaattggctaagtg
gi|25 : cTGTGATAAACCTATGACAT---------TT-T-------TTATATTAACC----AAATATAA---T--AT
gi|26 : acactattctagtgcatCTCGTTCTATAAATTC----AAT-----AATTATTAA--ACTCGTGAAAGATCTTCTAT
gi|28 : TTCAATAAATTC----AAT-----AATAAACAAGCGCTCCTGTAatata
gi|3 : TTGGTGTTTTCCG-TCTA-AGTCG-GCTCTCGTACGTAAATT-GCCGAATTTCTTTCT-TACTTGCCCTAATATATAAAAGACGC-C-GATTTGTCATGGT-TAAATGACGTT-ATTTTTTTTATATAT------TACGTCA-TATGA-AAC-TGAT-----C------TGA-----CCTATATTTTTTTCTCG--TTC-C---TTAT---A----GTGGTGATCATGGATCTGTT-AAA--TATATTGTAAAATCTAAA--AA-ATTGCCT---GAGTTA-GGTAT-T-GAAA-CAATTCTTACATTCGTGCTTATT-TATTATTGAATTAATTAAATT-CGTTGAGAAA------A--AT-----------------GATAAAATACTCGGCAAA------G----------CCCCGCTTAATA-----------T-A-TATT-TTCCCAAATCGTTTAATAAATTC----AAT-----AATAAAGAAGCACTCGTGTAAGATGTT
gi|4 : AGTTTACGATGCAGTAGTATTATGATCCCATGACATA------T-TT-T-------AGACAATAGCC-----GGTGTAA---T--ATCACTTCCGATT---AGTCCTTTGGTGTTTTCCG-CAAA-ATTTG-GCCCTCATGCATAAACT-GTCGAACTATTTCCA-GAATTTCCCAAACA-A-GAATGAC-T-CGGATTTGTCGT-GT-AAAATGTATTT-A---TTTGGAGAAGT------TTCGTCA-TACGACGACTTGA-AGAAAC------CAG-TATGTCCG-A---TTTACTCGCCTTC-C---TTAT---G----TAGGT-------GATAT-TT-GA--------GGT--A---T-----CA-TTTTCCT---GA-TCACTCAGA-T-AAAA--AA-TCT----TTCGT-TTCATT-TGTAATTGAATTTATAAAA-C-TAT-TGGCCA------GTTAT-----------------G----------------ATATATTGTTCGGCACGTCCACACAAAATG-----------T-A-T-GA-TTGCCAACTTGTTTAATCAATTC----AAT-----GAC-AATGTGAATTTAAGCAAGATATTCTATgttctacacgcgatacgtgaaaatgagcacacgaccgtactaaaccccacaacattatt
gi|5 : ATATTTTTTGTTGCAGGAGTGTAATAAACTCATGAGAT-------T-TT-T-------TTATATTAACC----TGATGTAT---T--ATCACTTCTGATT---C----------------CG-CATA-ACTCG-GATCTTGTAAGTAAAAT-ACCAAACTACTTTCG-GACTTGCCTGTATATATAAATGACAT-C-GATTTGTCATTGT-AAAATGACGTT-A---TTTTTAGCTGG------TACGTCA-TATGATGGC-TAATGGAAAC------TAA-TATTCTTG-A-TTTTTTCTTG--CTC-C---ATAG---ACTCTGAGGT-------GATCTGTTAAAA--TAAGTGGTAAC---TGTAC-CG-TTTTCCT---GAGTTA-TGTGT-T-AAAT-GA
gi|5 : gtatcac--AT-----------------A----------------A------A----------CCTCGCATAATA-----------T-A-T-CTATTGCAAACTTGTTCAATGAATTC----AAT-----AATAAACAAGCACTCTTGTAAGATtataaacctcgcataatatatctattgcaaacttgttcaatgaattcaataataaacaagcactcttgtaagattcacta
gi|6 : gtatcacatattttttgttgcaggagtgtaataaactcatgagatttttttatattaacctgatgtattatcacttctgattccgcataactcggatcttgtaagtaaaataccaaactactttcggacttgcctgtatatataaatgacatcgatttgtcattgtaaaatgacgttatttttagctggtacgtcatatgatggctaatggaaactaatattcttgattttttcttgctccatagactctgaggtgatctgttaaaataagtggtaactgtaccgttttcctgagttatgtgttaaatgatG-TA-A-ACTCG-ACCCT--TA--TAAAA--------CTATTTTAA-GACTTTTCCAAACATAGAAATTAATTAT-AATTTATCGTGGA-AAAATGACGTT-T---TTTTAATACGT------TTCGTCA-TACGACGAC------------------AG-CATGCCCG-A-TTTACTCTTG--TCC-C---TTAT---G----AATAT-------GATATGTA-AAA--TA-----TAA-----------A-TTTTC-----GAGTCG-TGTGA-T-AA----AA-TC-TACATTCGTGCTCATT-TATTATTGAATTCATTAAA-C-TATTTGCCAAT-----T--AT-----------------G----------------AGAACG-G----------CTTCGCAAAATA-----------T-A-T-AT-TTGCAAACTTGTTTAATAA-------------------AAATGAGCATTCATGCAACATCTTCTATtcacta
gi|7 : attttcgctagtGTACG-AAAATAGCCAAAGTACTTTTCTGACTTGCCCAAGTATATAAATGACGT-C-GATTTTTCAGGGT-TAGATGACGTT-A---TTT--AAA-GT------TACGTCA-TATGATGAC-TCACGGAAACAAAATTCAA-TACGCCCG-A-TTTTTTCTCT--TTC-C---TTAC---A----GAGAA-------GATCTGTT-TAA--TAAATGGTAAA---TGTA---A-TTTTTTTCACGAGCTG-TGTCATT-AAAC-AAA-TCTTACATTCGTGCT-ATTATATCATAGAATTTAATAAA-C----TTGGCA-----------------------------G----------------A------G----------CCTCGCATAATA-----------T-ATT-TT-TTTCCAACTCGTTTAGTAAATTC----AAT-----AATAAATAAGCAATCAGGTCAGATCCTTTGTttatcatctaattgttatttatacattagcttcactca
gi|8 : ATAATTTACAGTGCCTGTGTGTAATAAACCCATGACAT---------TT-T-------TGAACTTATCC----TAGTGTAA---T--ATCACTACTGATT---CATCATACAGCGTTTTCCA-TATA-ATTCA-TTGCTTGTACATAAAAT-GCCGAGCTGCTTTCA-GACATTTCTTAACATATAAATGATGT-T-GATTTGTCATTGTGAAAATGGCTTT-A---TTTTCAGATG-------TA-------ACAATGAC-TGGCATAAAC-------A---------G-ATTTTTTTCTCAT-TTC-T---TTAT---A----GAGGT-------GATCTGAA-AAA--TAATTGATAAA---AGTT--CC-ATTTACT---GAGTT--TGTGA-T-AAAA-GAA-TCTTACATTTGTGTTAATT-TATTATTGata
gi|9 : cAAATTAAGATGCAGTAGTGTAATAAATCCATGACATG------T-TT-T-------AGATATTAACC----TAGTGTAG---T--ATCACTTCTGATA---CATTG-TTGATGTTTTCTG-TTTATTTTCG-AGTCTCATACGTAAAAT-ACAGAACTATTTTCC-ACCTTGCCCGAATTTATCATTGATGG-T-GAATTGTCATAGT--AAATGATTTT-G---TTTCTAGACTT------TACGCCA-TGTGACGAA-TGATAGAAA-------TAATTACGTCTG-A-TTTATTCTCA--TTC-C---TTCT---A----GAAGT-------GATCTGAA-AAA--TAAGGGGTAAA---TGTA---A-------T---GA---A-TGTGA-T-GAAA-CAAGTTTTACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CATATTGCCGAAGATTTAAGATAGCCAGGTTAAACCTTAAAGTCAA
Unaligned ( gi|29 ): TTCAGTAAAAAACTTCTTGCGCAGAAAAAAA