lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 22 3333333333333333333333333333333333333 111111 111 22222 55555555555555555555555555555555 22 1111 1111 3333333333 666666666666666666666666666666666666666666666666666666666666666666666 1111 33333333 1 2222222222222222222 111 555555555555555555555555555 11 1
lowQualScore : 11 6 6666666666666666666666666666666666666 888888 1 4 222 8 4 4 4 4 666 33333 2 9999999999 2 99999999999999999999999999999999 66 0 77 8 9999999999 3333 6 22 666666 5 22 8888 2 6666666666 3 3 555555555555555555555555555555555555555555555555555555555555555555555 555 555 6 22 9999 44 44 4 1 555 7777 3 66666666 6 4 9999999999999999999 6 2 777 0 66 4 1 333333333333333333333333333 00 2 0
lowQualScore : .. . ..................................... ...... . . ... . . . . . ... ..... . .......... . ................................ .. . .. . .......... .... . .. ...... . .. .... . .......... . . ..................................................................... ... ... . .. .... .. .. . . ... .... . ........ . . ................... . . ... . .. . . ........................... .. . .
lowQualScore : 00 0 5555555555555555555555555555555555555 555555 9 4 222 9 4 4 4 4 444 11111 3 0000000000 9 55555555555555555555555555555555 66 4 55 2 7777777777 9999 7 99 111111 2 99 9999 9 9999999999 1 1 666666666666666666666666666666666666666666666666666666666666666666666 888 888 7 11 2222 66 66 4 1 888 1111 3 55555555 9 0 0000000000000000000 2 7 666 9 11 4 9 000000000000000000000000000 66 7 9
consensus : NNCCGTCCAGTGGCCGAAAGTNNCCGAGCCNGGGACCCAACCTGTAGGGTANNAACAT-AA---GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---TT----GTGT--A--A----ATC-ATCATTGAC------T-A-TAT-CAT-TGAC--TATGANTNTGTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGNCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTC--AGTTGA-TNTTTCTATA---------TGCTTA-----A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTT--GT--A--AGGTTT---T----CGCA-TCAANT-----GAAACAAATCTTGAAAAAANAAAA--AAA---A-AAATN-A-CGCCAGACGCTNATTGAT--T-AGTTCATN-----ACAT---AATAT-ACC-AAAG--CGTCTAATGAATCGGAT
Reference ( gi|5 ) : GTCCGTTAAGTGACTGAATATCGCTGA-TCAGG--------C-GT--GGT-CCGACAT-TA---GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---TT----GTAT--A--A----ATC-ATCATTGAC------T-A-TAT-CAT-TGAT--TACGATTCTGTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCC--AGTTGA-TATTTCTGCG---------TGCTTA-----A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTA--GT--A--AGGTTT---T----TGCA-TCAAAA-----GAAACAAATCTTAAAAAAAAAAAA--AAA---A-AAATT-A-TGCCAGGCGCTTTTTGAT--T-AGTTCATT-----ACAT---AATAT-ACC-AAAG--CGTCTTATGAATCGGAT
gi|2 : CCGTCCAGTGGTCGA---TGGCCGAGCCTGG--------CTGTAGGGTACCAACAT-AA---GCTCGATTTT-TATATTTC-AAA-A-TA-T-CAGA---TT----ATGC--A--A----ATC-TACATTGGC--------A-TAT-CAT-ACAC--TGCACATCTGTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATG---AAAAGATA-TTA-CAATAT-TGTA-TTC--AGCTAT-TTTTTCCGTA---------TGCTTA-----A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTT--GT--A--AGGTTT---T----CGCA---AAAATTT--CAAACACATCTT-TGAGAAAATTA--GAA---T-GAGTT-ACCGCCAGACGCCAATTGAT--T-AATTTATA-----AC------ATAT-ACT-ATTG--CGACTGATGAATAGGAT
gi|14 : cAGTGGCTAAAAGTCTCTGA-TCGGGGACCCAACT-ATA-GGT-AAAACATATACATGCTCGATTTT-TAT---TT-CAA-A-TA-TATTGA---T-----GTAT--ATTG----GTCGATC-TTGAC------C-AATGT-CAG-AAAT--CATGACCATGTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GATA-GCCGA-GAAGAA-AAaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|9 : cACAC-AA---GCTCGAATTT-TGT---TT-AAA-AACT-T-CTGA---TTACATGTATGTA--A----ATC-TTCATTGAC------T--------------------GAATCTGTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGA---AAAATTATTTT-CAATACATGTACTTT--AAT--A-TATTTTTATGTATGCTTAATGCTTA-----A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTT--GT--A--AGGTTT---T----TGTA-TAAAtata
gi|15 : gctaagcccagaccactgttgggaatagcttgagtataggttatgtACAT-GT---GCTTGTTTTT-CAT---TTCAAA-A-TT-T-CTGA---GT----ATGT--A--A----AGC-ATCAATGAC-----------AT-CAT-ACAG--TATGAATCTGTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GAT
gi|18 : atgggcaaagcccagtggagttcaattataggtaatacACAT-GA---GCT-GCTTTT-TAT---TTCAAA-A-TT-T-CTGA---TT-----TAT--A--AGTTAATC-ATTATTGACATTTGAT-A-TAT-------AT--TATGAATCTGTGTGTCATCTGCCGTCTCTATCTTA---------TATCTT--------AT--TGA------A--GCGA--GAT-----GG-AATT---------TATTAA-CAATTT-TTTG-TTC--AGTTGA-AATaattattattggtgataatagatttattctaa
gi|17 : tgaATAT-AA---GATCAAGTTT-TAA---TT-AAA-A-AC-T-CTCAACTTT----ATGT--A--A----ATC-AT---TGAC------T-AGTGT-CAT-AGAC--TATGAATATATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTC--ATTT---TATTTC
gi|21 : gtttgactatttgtACAC-AA---GCTTGACTTTATAC---TA-AAA-A-TTCT-CAGA---TT----TTGG--T--A----ATC-ATCATTGACAAA---TAA-TAT-CGT-AGAC--TA------TGTGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATC
gi|10 : CAT-CA---GCTCAATTCT-TATA--TT-AAA-A-TT-T-CTAA---TTATGCGTAT--A--A----GTT-ATCATTGAA--------A-TAC-T------T--TAC-ATTATATAT--AGTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTC--AGTGGA-TGTTTATATA---------TGCTGA-----A-----A------T--AT------TGTGA---G-----GG-AAAT---TTC------------AGTTT---T----CACA-TCAATT-----GAAACAAag
gi|16 : aataggtaacgttA---GCTAGATTTT-TGT---TT-CAATA-TT-T-TGGA---CT----GTAC------------T-ATAATGGAC--------A-TAT-CAT-TAAAAATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTAT-ATATGGT--TAA------ATTGCGA--GATAAAACAA-GAAGAA-A--------CTA-TAAC-T-TT-----------------TTTC-------------TGATTA-----A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTT--GT--A--AGG-TT---T----CGCA-TTA
gi|4 : TAA---TT----ATGT--G--A----ATC-GCCACTGAC------T-A-TGT---------------AT-CTGTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTC------TATGCCAATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTC--AGTTGG-T-----TGCA---------TGCTAA-----A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G---------A--A----T---T----TGCA-TAAAAT-----GAAACCATTTTTTAAAACATACA-----------------G-CGCCCGGCACGTGTTAATAATAAGTTTATA-----GC------ATAT-ACCAAAAG--AGTCTAATGAATAGGA
gi|25 : GA---TTTG--GT-T--A--A----ACC-ATCATTGAC------T-AGTAT-CAT-TGAC--AATGAGTGTATGTGTCAGCGTCCGTCGCCATAGTG---------GATCTC-CTATAC--T--TGA------ATTGTAG--GACCaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|26 : T--A--A----ACA-ATTATTGAC------T-AGTAC-CAT-TGGC--AATGAGTGTGTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATaggtgat
gi|27 : ttggtC-ATCATTGAC------T-AGTAC-CAT-TGAC--AATGAGTGTATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GAaaggtga
gi|32 : C-ATAATTGAC--------A--GT-CAT-TAAT---------CTGTGTG-----TCATGTC---ATCTTG---------GATCTTGTTGCATGGT--TGA------AA
gi|30 : TTGAC------T-A-AAGGCATATGGT---ATGACTATGTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--AA---GGCAA-GAT
gi|29 : -CAT-TGGC--AATGAGTGTATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GAT
gi|33 : aaacctgGAATCTATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATattttta
gi|1 : TCTGTGTGAA-TCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTC--GCTTGA-TTTTGCAATA---------TGTTGA-----A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTG--GT--C--AAATTT---TAATATATA-TTA---------AAACAAAGTTT--GAAGAACGAA--AAC---A-ATATTAA-CATCAGAC----TTTGAT--C-A----ATTAGGAAAGATC--AATAT-AAT-AAAG--CATCTAATGGATCG
gi|23 : aaTCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTC--TGTTGATTGTTTATATG---------TGCTTA-----AATGGTA------T--AA------TTCAG---GTTAAATT-AAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|3 : agctA--GAACAGATGA-GATGAA-AAAC--TATTTA-CGATAT-TTAA---C--A----A-TATTTTT--------------TTTATTGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTT--GT--ATAAGGTTT---T----TGCA-TCATTT-----GAAACAAATC-TGAAGAAAAAAAA--GAT---A-AAATA-A-TGCCAGTCACTAATTGAT--T-GATTAATT-----ATACAAGAATAT-ACC-AAAG--TGTCCATTGAATTAGAT
gi|7 : -AAAAACTATTTA-CAATAT-T-----CC--A-TTGA-AA-------A---------TA--TA-----A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTT--GTCAA--ACGGTC---A----TACGGTCATACCGTTTGAAATAGACCTTGAAAAAAGAAAACTAAACCGATAAATT-AACGCCAGACGCTCAATAAT--T-AGT----------ACAT---AA--------AAAG--CGTCTTACGACTCGGATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|12 : atAACTATTAA-C--TTT-TTTG-TACTAAATTGA-TTTTGTTATA---------TGTTTA-----A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATA--TGAAAATGT--A--ACGTGT---T----CGCA-TCAATT-----GAAAGAAATCTTGAAAAAAATAAA--CTA---A-AGAT------------GCTCATTGAG--T-AGTACATT-----AAAT---AGT-T-A---AAAATTTATCTCATCAATTGAAtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|6 : ccATTTG-AATTAT-TCCA-TTC--AATTGA-TTTTACTATAATTA-----TGTTCA-----A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGT--GT--A--ATGTTTATTT----TGCA-TCAAAT-----GACACAAATCTTGAAATGATAAAA--AAT---A-AATCA-A-TGCAAAACACTAATTGAT--T-AGTACATA-----AAAT---ATTGTAAAT-AAAGA-CATCCAATGAATCAGATattttgactaaaccaatca
gi|8 : GTG---------TGCTTG-----AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTC--GT--A--AGGGCT---T----TGCA-TCAATT-----GAAACACATTTT---------AAA--AGA---A-AAATG-A-CGCCAGACACTTTTT-AT--T-TGTT------------------TAT-AAC-AAAG--CGTCAAATGCATTGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|24 : AAATGCTT--GT--A--CAGTTT---T----CGCA-TCTAGT-----GAAACATATTTTAAAAAATTAAAA--AAA---A-AAATC-G----CAGACGCATATTAAA--T-ATTTCACA-----AC------ATAT-CCC-AAA---CATCTAATAACTCGAAaaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|28 ): ATAAGCATAAGGCGTCTAATGAATCGCACTGAAATAAACGATCGAAATAGGGACGTAAATAGCAACATCTAACGTAAAGTACGGAATGTAAT
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 111 22 888888888 11111 111 111111111 2222222222222222222222222 1111111111111111111111 44444444444444444444444 1111111111 2222222222222
lowQualScore : 0 888 22 0 44 1 666666666 3 5 33333 777 4 0 4 111 8 4 4 4 4 555 888888888 88888 44 6666 2 9999999999999999999999999 33 1 2 2 0 888888888 111 1 22 555555 1 22 0 1 55 3 888 444 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 1 3 44 3 3333333333 777 4 777 1 8888888888888 4 1 4 4
lowQualScore : . ... .. . .. . ......... . . ..... ... . . . ... . . . . . ... ......... ..... .. .... . ......................... .. . . . . ......... ... . .. ...... . .. . . .. . ... ... . . . . . ...................... . . ....................... ... ... . . . .. ..... ... . .. .. . . .. . .......... ... . ... . ............. . . . .
lowQualScore : 7 777 00 7 00 0 000000000 2 0 44444 000 0 7 0 000 0 0 0 0 0 888 444444444 99999 22 5555 9 9999999999999999999999999 88 7 1 0 5 000000000 777 6 88 888888 7 88 6 0 00 1 666 777 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 0 6 77 8 0000000000 222 0 000 0 5555555555555 4 1 0 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGA-TCGGG---------TGTAGGGTANCA-ACATA---A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---TT--A------TG----TA--A----ATC-ATCATTGAC------TA-TAT-CAT-TGAC---NATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTGGAT---------CTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGAGATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAATTG-AAACAAATCTT-GAAAAAANAAAA--AAA-----AAANTAAC-GCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAAAGTNNCCGAGCCNGGGACCCAACCTGTAGGGTANNA-ACATA---A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---TT--G------TG----TA--A----ATC-ATCATTGAC------TA-TAT-CAT-TGAC---TATGAN-TNT-GTGTGCCATCTTCCGTCGCCATCTTGGAT---------CTTGTTGTATGGT--TGA------ANTGCGA--GATCAGNCGAGATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAANTG-AAACAAATCTT-GAAAAAANAAAA--AAA-----AAAATNAC-GCCAGACGC---TNATTGATTAGTTCATNACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTGAAT---------CTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGAAAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATATTA-AAACAAAGTTT-G-AAGAACGAAA--ACA-----ATATTAAC-ATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : CATC---A-GCTCAATTCT-TATA--TT-AAA-A-TT-T-CTAA---TT--A------TGCGTATA--A----GTT-ATCATTGAA-------A-TAC---T-TTAC-------AT-TAT-ATATA--GTCTTAGATTG---TGTTAGAT---------ATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGGCATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--AT------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAATTG-AAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aataggtaacgttAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAATTG-AAAGAAATCTT-GA------AAAA--AAT-----AAACTAA-----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGA-TCGGGGACCCAAC-TATAGG-TAA-A-ACATATACATGCTCGATTTT-TAT---TT-CAA-A-TA-TATTGA---T---G------TA----TATTG----GTCGATC-TTGAC------CAATGT-CAG-AAAT---CATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTTGAT---------GTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGAGAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GGTAATACACATG---T-GCTTGTTTTT-CAT---TTCAAA-A-TT-T-CTGA---GT--A------TG----TA--A----AGC-ATCAATGAC----------AT-CAT-ACAG---TATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTAGAT---------ATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaagcccagtggagttcaattata---A-GCTAGATTTT-TGT---TT-CAATA-TT-T-TGGA---CT--G------T--------------ACT-ATAATGGAC-------A-TAT-CAT-TAAA---AATAAAATGTTGTGTACTATCTTCCGACGCCATCTTAAAT---------CCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAAG----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -ATATA---A-GATCAAGTTT-TAA---TT-AAA-A-AC-T-CTCAACTTT--A------TG----TA--A----ATC-AT---TGAC------TAGTGT-CAT-AGAC---TATGAA-TAT-ATGTGATATCTTCCATCAACATCTTGAAT---------ATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGAGAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgtA-ACATG---A-GCT-GCTTTT-TAT---TTCAAA-A-TT-T-CTGA---TT---------TA----TA--AGTTAATC-ATTATTGACATTTGATA-TAT-------AT---TATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTATAT---------CTTATTG------------------------------AAGCGAGATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgCCGTCCAGTGGTCGA---TGGCCGAGCCTGG--------CTGTAGGGTACCA-ACATA---A-GCTCGATTTT-TATATTTC-AAA-A-TA-T-CAGA---TT--A------TG----CA--A----ATC-TACATTGGC-------A-TAT-CAT-ACAC---TGCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCAGAT---------TTTGTTG----------A------ATTGCGA--GTTTAGACGGTATGAA-AAGA--TATT-A-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAATTAGA--ATG-----AG--TTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-ACACA---A-GCTTGACTTTATAC---TA-AAA-A-TTCT-CAGA---TT--T------TG----GT--A----ATC-ATCATTGACAAA---TAATAT-CGT-AGAC---TATG--------TGTCCCATTGTTCATCACCATCTTGGAT---------CTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : T---------CTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGAGATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--AA------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTAGTG-AAACATATTTT-AAAAAATTAAAA--AAA-----AAAAT--C-G-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---TTTGG------T-----TA--A----ACC-ATCATTGAC------TAGTAT-CAT-TGAC---AATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTGGAT---------C---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA
gi|26 : ----TA--A----ACA-ATTATTGAC------TAGTAC-CAT-TGGC---AATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTGGAT---------C---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGAt
gi|27 : ttggtC-ATCATTGAC------TAGTAC-CAT-TGAC---AATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTGGAT---------C---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGAGA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGC---AATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTGGAT---------C---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGAGATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGAGATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CATTTG-AAACAAATC-T-GAAGAAAAAAAA--GAT-----AAAATAAT-GCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------TA-AAGGCATATGG----TATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTGG-T---------CTTGTT---CGGT--TGA------AATGCGA--A---AGGCAAGATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTGGAT---------CTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTAGAT---------CTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---TT--A------TG----TG--A----ATC-GCCACTGAC------TA-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCAAT---AATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAAATG-AAACCATTTTT-TAAAACATACA-----------------GC-GCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGA-TCAGG---------CGT--GGT-CCG-ACATT---A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---TT--G------TA----TA--A----ATC-ATCATTGAC------TA-TAT-CAT-TGAT---TACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTAGAT---------TTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGAGATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAAAAG-AAACAAATCTT-AAAAAAAAAAAA--AAA-----AAAATTAT-GCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAAATG-ACACAAATCTT-GAAATGATAAAA--AAT-----AAATCAAT-GCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGTTTG-AAATAGACCTT-GAAAAAAGAAAACTAAACCGATAAATTAAC-GCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAATTG-AAACACATTTT----------AAA--AGA-----AAAATGAC-GCCAGACAC---TT-TTTATTTGTT-------------TAT-AAC-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTATAGGTTATGT-ACACA---A-GCTCGAATTT-TGT---TT-AAA-AACT-T-CTGA---TT--ACATGTATG----TA--A----ATC-TTCATTGAC------T--------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTGGAC---------ATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGAGATGAA-AAA--TTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAAaaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 1111111 1111111111111111 222222222 111111111 1111111111111111111111 44444444444444444444444 111111 2222222
lowQualScore : 66666666666666666666666666666 0 8888888 777 4 0 4 777 4 8 4 4 4 4 555 3 5555555555555555 2 999999999 44 555555555 22 1 2 2 0 888888888 444 0 22 555555 1 22 0 1 2 8888 44 2 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 33 4 0 3 55 333333 2 777 1 55 1 5555555 66666 4
lowQualScore : ............................. . ....... ... . . . ... . . . . . . ... . ................ . ......... .. ......... .. . . . . ......... ... . .. ...... . .. . . . .... .. . . . . . . ...................... . . ....................... ... ... . . . .. ..... ... . .. .. .. . . . .. ...... . ... . .. . ....... ..... .
lowQualScore : 22222222222222222222222222222 8 8888888 000 0 7 0 000 0 0 0 0 0 0 888 3 9999999999999999 9 333333333 11 999999999 77 7 1 0 5 444444444 222 3 88 888888 7 88 6 5 4 4444 55 9 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 66 0 7 8 55 888888 4 000 0 88 2 9999999 77777 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATAGGGTANCA-ACATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA--AAN-----AAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TGTAGGGTANCA-ACATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA--AAA-----AAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATA-TTAAAACAAAGT-TTG-AAGAACGAAA--ACA-----ATATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : CATC---A-GCTCAATTCT-TA---TATT-AAA-A-TT-T-CTAA---T-T-A------T--GCGTATAAGTT-ATCATTGAA-------A-TAC---T-TTAC----AT----TAT-ATATA--GTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--AT------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAA-TTGAAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aataggtaacgttAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAA-TTGAAAGAAATC-TTGA------AAAA--AAT-----AAACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATAGG-TAA-A-ACATATACATGCTCGATTTT-TA---T-TT-CAA-A-TA-TATTGA---TGT-A------T--A----TTGGTCGATC-TTGAC------CAATGT-CAG-AAATC---ATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGA-GAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATAGG-TAATACACATG---T-GCTTGTTTTT-CA---T-TTCAAA-A-TT-T-CTGA---G-T-A------T--G----TAAAGC-ATCAATGAC----------AT-CAT-ACAGT---ATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa---A-GCTAGATTTT-TG---T-TT-CAATA-TT-T-TGGA---C-T-G------T----------ACT-ATAATGGAC-------A-TAT-CAT-TAAAA---ATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAA-G----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -ATATA---A-GATCAAGTTT-TA---A-TT-AAA-A-AC-T-CTCAACTT-T-A------T--G----TAAATC-AT---TGAC------TAGTGT-CAT-AGACT---ATGAA-TAT-ATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgtA-ACATG---A-GCT-GCTTTT-TA---T-TTCAAA-A-TT-T-CTGA---T-TTA------TAAG----TTAATC-ATTATTGACATTTGATA-TAT--AT-T-------ATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTA---------TATCTTATTG------------------------------AAGCGA-GATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCA-ACATA---A-GCTCGATTTT-TATATT-TC-AAA-A-TA-T-CAGA---T-T-A------T--G----CAAATC-TACATTGGC-------A-TAT-CAT-ACACT---GCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATGAA-AAGA--TA-TTA-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAAT-TAG--AAT-----GAGTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-ACACA---A-GCTTGACTTTATA---C-TA-AAA-A-TTCT-CAGA---T-T-T------T--G----GTAATC-ATCATTGACAAA---TAATAT-CGT-AGACT---ATG--------TGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : TCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--AA------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTA-GTGAAACATATT-TTAAAAAATTAAAA--AAA-----AAAAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---T-T--------T--GGT--TAAACC-ATCATTGAC------TAGTAT-CAT-TGACA---ATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTG---------GATC---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA-
gi|26 : ----TAAACA-ATTATTGAC------TAGTAC-CAT-TGGCA---ATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGA-t
gi|27 : ttggtC-ATCATTGAC------TAGTAC-CAT-TGACA---ATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGCA---ATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGA-GATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CAT-TTGAAACAAATC--TGAAGAAAAAAAA--GAT-----AAAATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------TA-AAGGCATATGG-T---ATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--A---AGGCAA-GATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTG---------GATCTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-T-A------T--G----TGAATC-GCCACTGAC------TA-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCA----ATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAA-ATGAAACCATTT-TTTAAAACATA-----------------CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT--GGT-CCG-ACATT---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-G------T--A----TAAATC-ATCATTGAC------TA-TAT-CAT-TGATT---ACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAA-AAGAAACAAATC-TTAAAAAAAAAAAA--AAA-----AAAATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAA-ATGACACAAATC-TTGAAATGATAAAA--AAT-----AAATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGT-TTGAAATAGACC-TTGAAAAAAGAAAACTAAACCGATAAATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAA-TTGAAACACATT-TT---------AAA--AGA-----AAAATGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------C-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATAGGTTATGT-ACACA---A-GCTCGAATTT-TG---T-TT-AAA-AACT-T-CTGA---T-T-ACATGTAT--G----TAAATC-TTCATTGAC------T--------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGA---AAAATTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAA-aaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 1 1111111111111111 222222222 111111111 1111111111111111111111 44444444444444444444444444444 1111111 2222222
lowQualScore : 66666666666666666666666666666 9 9999 4 777 4 0 4 777 4 8 4 4 4 4 555 3 5555555555555555 2 999999999 44 555555555 22 1 2 2 0 888888888 444 0 22 555555 1 22 0 1 2 8888 44 2 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 33 4 0 444 3333333 3 555 777 1 55 1 5555555 66666 4
lowQualScore : ............................. . .... . ... . . . ... . . . . . . ... . ................ . ......... .. ......... .. . . . . ......... ... . .. ...... . .. . . . .... .. . . . . . . ...................... . . ............................. ... ... . . . .. ..... ... . .. .. .. . . ... ....... . ... ... . .. . ....... ..... .
lowQualScore : 22222222222222222222222222222 2 6666 4 000 0 7 0 000 0 0 0 0 0 0 888 3 9999999999999999 9 333333333 11 999999999 77 7 1 0 5 444444444 222 3 88 888888 7 88 6 5 4 4444 55 9 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 66 0 7 111 0000000 8 111 000 0 88 2 9999999 77777 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATAGG-TANCG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--A------A------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAA-ANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATAGGGTANCA-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--A------A------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AANAA-ANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--A------A------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATA-TTAAAACAAAGT-TTGAAGAACG--AA-------AACAATATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : ATAGG-TAACG-TTCATC---A-GCTCAATTCT-TA---TATT-AAA-A-TT-T-CTAA---T-T-A------T--GCGTATAAGTT-ATCATTGAA-------A-TAC---T-TTAC----AT----TAT-ATATA--GTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--A------T------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAA-TTGAAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTA------TTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAA-TTGAAAGAAATC-TTGA------AAAA-------AATAA-ACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATAGG-TAA-A-A-CATATACATGCTCGATTTT-TA---T-TT-CAA-A-TA-TATTGA---TGT-A------T--A----TTGGTCGATC-TTGAC------CAATGT-CAG-AAATC---ATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGA-GAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATAGG-TAATACA-CATG---T-GCTTGTTTTT-CA---T-TTCAAA-A-TT-T-CTGA---G-T-A------T--G----TAAAGC-ATCAATGAC----------AT-CAT-ACAGT---ATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa---A-GCTAGATTTT-TG---T-TT-CAATA-TT-T-TGGA---C-T-G------T----------ACT-ATAATGGAC-------A-TAT-CAT-TAAAA---ATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAA-G----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--A------AG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -A-TATA---A-GATCAAGTTT-TA---A-TT-AAA-A-AC-T-CTCAACTT-T-A------T--G----TAAATC-AT---TGAC------TAGTGT-CAT-AGACT---ATGAA-TAT-ATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgtA-A-CATG---A-GCT-GCTTTT-TA---T-TTCAAA-A-TT-T-CTGA---T-TTA------TAAG----TTAATC-ATTATTGACATTTGATA-TAT--AT-T-------ATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTA---------TATCTTATTG------------------------------AAGCGA-GATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCA-A-CATA---A-GCTCGATTTT-TATATT-TC-AAA-A-TA-T-CAGA---T-T-A------T--G----CAAATC-TACATTGGC-------A-TAT-CAT-ACACT---GCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATGAA-AAGA--TA-TTA-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--T------A------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAAT-TAG-------AATGA-GTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-A-CACA---A-GCTTGACTTTATA---C-TA-AAA-A-TTCT-CAGA---T-T-T------T--G----GTAATC-ATCATTGACAAA---TAATAT-CGT-AGACT---ATG--------TGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : TCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--A------A------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTA-GTGAAACATATT-TTAAAAAATTAAAA-------AAAAA-AAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---T-T--------T--GGT--TAAACC-ATCATTGAC------TAGTAT-CAT-TGACA---ATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTG---------GATC---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA-
gi|26 : ----TAAACA-ATTATTGAC------TAGTAC-CAT-TGGCA---ATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGA-t
gi|27 : ttggtC-ATCATTGAC------TAGTAC-CAT-TGACA---ATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGCA---ATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGA-GATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--A------A------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CAT-TTGAAACAAATC--TGAAGAAAAAAAA-------GATAA-AATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------TA-AAGGCATATGG-T---ATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--A---AGGCAA-GATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTG---------GATCTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-T-A------T--G----TGAATC-GCCACTGAC------TA-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCA----ATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGG------A------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAA-ATGAAACCATTT-TTTAAAACATA------------------CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT--GGT-CCG-A-CATT---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-G------T--A----TAAATC-ATCATTGAC------TA-TAT-CAT-TGATT---ACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--A------A------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAA-AAGAAACAAATC-TTAAAAAAAAAAAA-------AAAAA-AATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--A------AGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAA-ATGACACAAATC-TTGAAATGATAAAA-------AATAA-ATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--G------A------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGT-TTGAAATAGACC-TTGAAAAAAGAAAACTAAACCGATAA-ATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--A------A------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAA-TTGAAACACATT-TT---AAAAGAAAA-------A-------TGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------C-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATAGGTTATGT-A-CACA---A-GCTCGAATTT-TG---T-TT-AAA-AACT-T-CTGA---T-T-ACATGTAT--G----TAAATC-TTCATTGAC------T--------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGA---AAAATTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--A------A------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAA-aaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 11111 11111111111111 222222222 111111111 1111111111111111111111 44444444444444444444444 1111111 2222222
lowQualScore : 66666666666666666666666666666 6 55555 4 777 4 0 4 777 4 8 4 4 4 4 999 3 22222222222222 2 999999999 44 555555555 22 1 2 2 0 888888888 444 0 22 555555 1 22 0 1 2 55 3 888 2 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 33 4 3 2 33 7777777 0 3 777 1 55 1 5555555 66666 4
lowQualScore : ............................. . ..... . ... . . . ... . . . . . . ... . .............. . ......... .. ......... .. . . . . ......... ... . .. ...... . .. . . . .. . ... . . . . . . ...................... . . ....................... ... ... . . . .. ..... ... . .. .. .. . . . .. ....... . . ... . .. . ....... ..... .
lowQualScore : 22222222222222222222222222222 7 11111 4 000 0 7 0 000 0 0 0 0 0 0 222 3 88888888888888 9 333333333 11 999999999 77 7 1 0 5 444444444 222 3 88 888888 7 88 6 5 4 00 1 666 9 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 66 0 2 2 22 0000000 7 8 000 0 88 2 9999999 77777 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-TA------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTANCG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-TA------T--G----TAAATC-ATCATTGAC------TA-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATA-TTAAAACAAAGT-TTGAAGAACGAAAAC------AAT--ATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : ATA-GGTAACG-TTCATC---A-GCTCAATTCT-TA---TATT-AAA-A-TT-T-CTAA---T-TA------T--GCGTATAAGTT-ATCATTGAA-------A-TAC---T-TTAC----AT----TAT-ATATA--GTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--AT------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAA-TTGAAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAA-TTGAAAGAAATC-TTGA------AAAA-------AATAAACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATA-GGTAA-A-A-CATATACATGCTCGATTTT-TA---T-TT-CAA-A-TA-TATTGA---TGTA------T--A----TTGGTCGATC-TTGAC------CAATGT-CAG-AAATC---ATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGA-GAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATA-GGTAATACA-CATG---T-GCTTGTTTTT-CA---T-TTCAAA-A-TT-T-CTGA---G-TA------T--G----TAAAGC-ATCAATGAC----------AT-CAT-ACAGT---ATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa---A-GCTAGATTTT-TG---T-TT-CAATA-TT-T-TGGA---C-TG------T----------ACT-ATAATGGAC-------A-TAT-CAT-TAAAA---ATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAA-G----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -A-TATA---A-GATCAAGTTT-TA---A-TT-AAA-A-AC-T-CTCAACTT-TA------T--G----TAAATC-AT---TGAC------TAGTGT-CAT-AGACT---ATGAA-TAT-ATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgt-A-CATG---A-GCT-GCTTTT-TA---T-TTCAAA-A-TT-T-CTGAT--T-TA------TAAG----TTAATC-ATTATTGACATTTGATA-TAT--AT-T-------ATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTA---------TATCTTATTG------------------------------AAGCGA-GATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgaCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCA-A-CATA---A-GCTCGATTTT-TATATT-TC-AAA-A-TA-T-CAGA---T-TA------T--G----CAAATC-TACATTGGC-------A-TAT-CAT-ACACT---GCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATGAA-AAGA--TA-TTA-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAAT-TAG-------AATGAGTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-A-CACA---A-GCTTGACTTTATA---C-TA-AAA-A-TTCT-CAGA---T-TT------T--G----GTAATC-ATCATTGACAAA---TAATAT-CGT-AGACT---ATG--------TGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : TCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--AA------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTA-GTGAAACATATT-TTAAAAAATTAAAA-------AAAAAAAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---T-T-------T--GGT--TAAACC-ATCATTGAC------TAGTAT-CAT-TGACA---ATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTG---------GATC---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA-
gi|26 : ----TAAACA-ATTATTGAC------TAGTAC-CAT-TGGCA---ATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGA-t
gi|27 : ttggtC-ATCATTGAC------TAGTAC-CAT-TGACA---ATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGCA---ATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGA-GATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CAT-TTGAAACAAATC--TGAAGAAAAAAAA-------GATAAAATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------TA-AAGGCATATGG-T---ATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--A---AGGCAA-GATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTG---------GATCTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-TA------T--G----TGAATC-GCCACTGAC------TA-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCA----ATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAA-ATGAAACCATTT-TT-------TAAAA-------CATA---CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT--GGT-CCG-A-CATT---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-TG------T--A----TAAATC-ATCATTGAC------TA-TAT-CAT-TGATT---ACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAA-AAGAAACAAATC-TTAAAAAAAAAAAA-------AAAAAAATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAA-ATGACACAAATC-TTGAAATGATAAAA-------AATAAATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGT-TTGAAATAGACC-TTGAAAAAAGAAAACTAAACCGATAAATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAA-TTGAAACACATT-TT---AAAAGAAAA-------A------TGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------C-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATA-GGTTATGTA-CACA---A-GCTCGAATTT-TG---T-TT-AAA-AACT-T-CTGA---T-TACATGTAT--G----TAAATC-TTCATTGAC------T--------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGAA-AAA--TTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAA-aaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 1111 1111111111111111 33333333333333333333333333 1111111111111111111111 44444444444444444444444 1111111 2222222
lowQualScore : 66666666666666666666666666666 6 3333 4 777 4 0 4 777 4 8 4 4 4 4 555 3 5555555555555555 2 11111111111111111111111111 22 1 2 2 0 888888888 444 0 22 555555 1 22 0 1 2 8888 44 2 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 33 4 3 2 33 7777777 0 3 777 1 55 1 5555555 66666 4
lowQualScore : ............................. . .... . ... . . . ... . . . . . . ... . ................ . .......................... .. . . . . ......... ... . .. ...... . .. . . . .... .. . . . . . . ...................... . . ....................... ... ... . . . .. ..... ... . .. .. .. . . . .. ....... . . ... . .. . ....... ..... .
lowQualScore : 22222222222222222222222222222 7 7777 4 000 0 7 0 000 0 0 0 0 0 0 888 3 9999999999999999 9 00000000000000000000000000 77 0 1 0 5 444444444 222 3 88 888888 7 88 6 5 4 4444 55 9 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 66 0 2 2 22 0000000 7 8 000 0 88 2 9999999 77777 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATA-TTAAAACAAAGT-TTGAAGAACGAAAAC------AAT--ATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : ATA-GGTAACG-TTCATC---A-GCTCAATTCT-TA---TATT-AAA-A-TT-T-CTAA---T-T-A------T--GCGTATAAGTT-ATCATTGAA--------A-TAC---T-TTAC----AT----TAT-ATATA--GTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--AT------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAA-TTGAAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAA-TTGAAAGAAATC-TTGA------AAAA-------AATAAACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATA-GGTAA-A-A-CATATACATGCTCGATTTT-TA---T-TT-CAA-A-TA-TATTGA---TGT-A------T--A----TTGGTCGATC-TTGAC------C-AATGT-CAG-AAATC---ATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGA-GAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATA-GGTAATACA-CATG---T-GCTTGTTTTT-CA---T-TTCAAA-A-TT-T-CTGA---G-T-A------T--G----TAAAGC-ATCAATGAC-----------AT-CAT-ACAGT---ATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa---A-GCTAGATTTT-TG---T-TT-CAATA-TT-T-TGGA---C-T-G------T----------ACT-ATAATGGAC--------A-TAT-CAT-TAAAA---ATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAA-G----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -A-TATA---A-GATCAAGTTT-TA---A-TT-AAA-A-AC-T-CTCAACTT-T-A------T--G----TAAATC-AT---TGAC------T-AGTGT-CAT-AGACT---ATGAA-TAT-ATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgt-A-CATG---A-GCT-GCTTTT-TA---T-TTCAAA-A-TT-T-CTGA---T-TTA------TAAG----TTAATC-ATTATTGACATTTGAT-A-TAT--AT-T-------ATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTA---------TATCTTATTG------------------------------AAGCGA-GATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgaCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCA-A-CATA---A-GCTCGATTTT-TATATT-TC-AAA-A-TA-T-CAGA---T-T-A------T--G----CAAATC-TACATTGGC--------A-TAT-CAT-ACACT---GCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATGAA-AAGA--TA-TTA-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAAT-TAG-------AATGAGTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-A-CACA---A-GCTTGACTTTATA---C-TA-AAA-A-TTCT-CAGA---T-T-T------T--G----GTAATC-ATCATTGACAAA---TAA-TAT-CGT-AGAC----------TAT-GTGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : TCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--AA------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTA-GTGAAACATATT-TTAAAAAATTAAAA-------AAAAAAAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---T-T--------T--GGT--TAAACC-ATCATTGAC------T-AGTAT-CAT-TGACA---ATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTG---------GATC---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA-
gi|26 : ----TAAACA-ATTATTGAC------T-AGTAC-CAT-TGGCA---ATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGA-t
gi|27 : ttggtC-ATCATTGAC------T-AGTAC-CAT-TGACA---ATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGCA---ATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGA-GATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CAT-TTGAAACAAATC-T-GAAGAAAAAAAA-------GATAAAATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------T-A-AAGGCATATGG-T---ATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--A---AGGCAA-GATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTG---------GATCTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-T-A------T--G----TGAATC-GCCACTGAC------T-A-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCA----ATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAA-ATGAAACCATTT-TT-------TAAAA-------CATA---CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT--GGTC-CG-A-CATT---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-G------T--A----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGATT---ACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAA-AAGAAACAAATC-TTAAAAAAAAAAAA-------AAAAAAATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAA-ATGACACAAATC-TTGAAATGATAAAA-------AATAAATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGT-TTGAAATAGACC-TTGAAAAAAGAAAACTAAACCGATAAATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAA-TTGAAACACATT-TT---AAAAGAAAA-------A------TGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------C-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATA-GGTTATGTA-CACA---A-GCTCGAATTT-TG---T-TT-AAA-AACT-T-CTGA---T-T-ACATGTAT--G----TAAATC-TTCATTGAC------T---------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGA---AAAATTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAA-aaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 1111 1111111111111111 33333333333333333333333333 1111111111111111111111 44444444444444444444444 1111111 2222222
lowQualScore : 66666666666666666666666666666 6 3333 4 777 4 0 4 777 4 8 4 4 4 4 555 3 5555555555555555 2 11111111111111111111111111 22 1 2 2 0 888888888 444 0 22 555555 1 22 0 1 2 8888 44 2 2 2 1 1 2 5555555555555555555555 1 3 00000000000000000000000 555 555 6 0 0 44 66666 555 3 44 44 33 4 3 2 33 7777777 0 3 777 1 55 1 5555555 66666 4
lowQualScore : ............................. . .... . ... . . . ... . . . . . . ... . ................ . .......................... .. . . . . ......... ... . .. ...... . .. . . . .... .. . . . . . . ...................... . . ....................... ... ... . . . .. ..... ... . .. .. .. . . . .. ....... . . ... . .. . ....... ..... .
lowQualScore : 22222222222222222222222222222 7 7777 4 000 0 7 0 000 0 0 0 0 0 0 888 3 9999999999999999 9 00000000000000000000000000 77 0 1 0 5 444444444 222 3 88 888888 7 88 6 5 4 4444 55 9 9 9 7 4 9 2222222222222222222222 5 1 22222222222222222222222 444 444 2 5 2 22 00000 444 1 22 22 66 0 2 2 22 0000000 7 8 000 0 88 2 9999999 77777 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
gi|1 : AA-TCT-GTGTGA-ATCCGTCGTCGCCATCTTG---------AATCTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGA-AAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-A-----ATTAGGTT--AA------TTTAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATA-TTAAAACAAAGT-TTGAAGAACGAAAAC------AAT--ATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AAT-AAAG-CATCTAATGGATCG
gi|10 : ATA-GGTAACG-TTCATC---A-GCTCAATTCT-TA---TATT-AAA-A-TT-T-CTAA---T-T-A------T--GCGTATAAGTT-ATCATTGAA--------A-TAC---T-TTAC----AT----TAT-ATATA--GTCTTAGATTG---TGTTA---------GATATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGG-CATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-A-----A------T--AT------TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAA-TTGAAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-A-----A------T--GAAGGCTATTTGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAA-TTGAAAGAAATC-TTGA------AAAA-------AATAAACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATA-GGTAA-A-A-CATATACATGCTCGATTTT-TA---T-TT-CAA-A-TA-TATTGA---TGT-A------T--A----TTGGTCGATC-TTGAC------C-AATGT-CAG-AAATC---ATGAC-CAT-GTGTGCCATCGTCTGTCGCTATCCTT---------GATGTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGA-GAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATA-GGTAATACA-CATG---T-GCTTGTTTTT-CA---T-TTCAAA-A-TT-T-CTGA---G-T-A------T--G----TAAAGC-ATCAATGAC-----------AT-CAT-ACAGT---ATGAA-TCT-GTGTGCCATCTGCAATTGCCATCTTA---------GATATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa---A-GCTAGATTTT-TG---T-TT-CAATA-TT-T-TGGA---C-T-G------T----------ACT-ATAATGGAC--------A-TAT-CAT-TAAAA---ATAAAATGTTGTGTACTATCTTCCGACGCCATCTTA---------AATCCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAA-G----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA---------------------------TTA-A-----A------T--AAG-----TGTAA-----T---TT-AAGT---TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : -A-TATA---A-GATCAAGTTT-TA---A-TT-AAA-A-AC-T-CTCAACTT-T-A------T--G----TAAATC-AT---TGAC------T-AGTGT-CAT-AGACT---ATGAA-TAT-ATGTGATATCTTCCATCAACATCTTG---------AATATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGA-GAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttgt-A-CATG---A-GCT-GCTTTT-TA---T-TTCAAA-A-TT-T-CTGA---T-TTA------TAAG----TTAATC-ATTATTGACATTTGAT-A-TAT--AT-T-------ATGAA-TCT-GTGTGTCATCTGCCGTCTCTATCTTA---------TATCTTATTG------------------------------AAGCGA-GATG----GAATTTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgaCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCA-A-CATA---A-GCTCGATTTT-TATATT-TC-AAA-A-TA-T-CAGA---T-T-A------T--G----CAAATC-TACATTGGC--------A-TAT-CAT-ACACT---GCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCA---------GATTTT--------GT--TGA------ATTGCGA--GTTTAGACGG-TATGAA-AAGA--TA-TTA-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-A-----ACGGTGGT--TA------TTTAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAAT-TAG-------AATGAGTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACT-ATTG-CGACTGATGAATAGGATaat
gi|21 : c-A-CACA---A-GCTTGACTTTATA---C-TA-AAA-A-TTCT-CAGA---T-T-T------T--G----GTAATC-ATCATTGACAAA---TAA-TAT-CGT-AGAC----------TAT-GTGTCCCATTGTTCATCACCATCTTG---------GATCTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : TCTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGA-GATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AATGGTA------T--AA------TTCAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTA-GTGAAACATATT-TTAAAAAATTAAAA-------AAAAAAAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCC-AAA--CATCTAATAACTCGAA
gi|25 : GA---T-T--------T--GGT--TAAACC-ATCATTGAC------T-AGTAT-CAT-TGACA---ATGAG-TGT-ATGTGTCAGCGTCCGTCGCCATAGTG---------GATC---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA-
gi|26 : ----TAAACA-ATTATTGAC------T-AGTAC-CAT-TGGCA---ATGAG-TGT-GTGTGCCAGCGTCCATCGCCATATTG---------GATC---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGA-t
gi|27 : ttggtC-ATCATTGAC------T-AGTAC-CAT-TGACA---ATGAG-TGT-ATGTGCCAGCGTCCGTCACCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGA-GA
gi|28 : -AAGG-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGGCA---ATGAG-TGT-ATGTGCCAGCGTCCGTCGCCATATTG---------GATC---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGA-GATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGA-GATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGA-----A------T--AA------TTAAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CAT-TTGAAACAAATC-T-GAAGAAAAAAAA-------GATAAAATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACC-AAAG-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC------T-A-AAGGCATATGG-T---ATGAC-TAT-GTGGGCCAACATCCGTCACCGTCTTG---------G-TCTTGTT---CGGT--TGA------AATGCGA--A---AGGCAA-GATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGACAGTCATTAA-TCT-GTGTGTCAT--------GTCATCTTG---------GATCTTGTTGCATGGT--TGA------A
gi|33 : cGAA-TCT-ATGTGTCGTCTGCAGTCTCCATCTTA---------GATCTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-T-A------T--G----TGAATC-GCCACTGAC------T-A-TGT-----------------A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCA----ATAATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-A-----A------TTGGA------TT--A---CTT---TT-AAATAAG-G-------A--A-----T---T-TG--CAT--AAA-ATGAAACCATTT-TT-------TAAAA-------CATA---CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGC------ATAT-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT--GGTC-CG-A-CATT---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-G------T--A----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGATT---ACGAT-TCT-GTGTGAAATCTCCCGTCGCCATATTA---------GATTTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGA-GATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAA-AAGAAACAAATC-TTAAAAAAAAAAAA-------AAAAAAATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACC-AAAG-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-A-----A------T--AAGAATAATTTA----GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAA-ATGACACAAATC-TTGAAATGATAAAA-------AATAAATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAAT-AAAGACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-A-----A------T--GA------GTCAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGT-TTGAAATAGACC-TTGAAAAAAGAAAACTAAACCGATAAATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA--------AAAG-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTGA------G--AA------TTTAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAA-TTGAAACACATT-TT---AAAAGAAAA-------A------TGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------C-AAAG-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATA-GGTTATGTA-CACA---A-GCTCGAATTT-TG---T-TT-AAA-AACT-T-CTGA---T-T-ACATGTAT--G----TAAATC-TTCATTGAC------T---------------------GAA-TCT-GTGTGCCAGCTTCCATTGCCGTGTTG---------GACATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGA-GATGA---AAAATTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-A-----ATGAGTGT--AA------TTTAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAA-aaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
blockSeqs : CTGAATATCGCTGATCAGG G ATAC . TAC T A TAT . C T A C A ACT G ACATGTATG G AAATAATATCGTAGAC AA A T T GATAGCGTT TTG TG TCATAC A GC A T AAAT AC A A C G G T ATTTTTATGTATGCTTAA G G ATGAAGGCTA TGC AAA C CA TAAG ATT A GT AC TT T G G AT CTAAACC C GTG C AC T TACAAGA ACCA A
blockSeqs : TCGATGGCCGAGCCTGGC . ATGT . . . . . . C . . . . . . TATAAG . CAATGTCAGAAATC C A . G . TCA . . A . C . GAA AC . . . A T . TTTACTATAATTA T . ACGGTGGTTA . . T . ACG . . . . T . G A TT . T . A TT A AATA AAAT .
blockSeqs : AGTTCAAT . CCA . . . . . . . . . . . . . TGGT . TAGTGTCATAGACT A C . T . TTG . . A . A . GAA AC . . . T T . GTTTATATA T . ATAAGAATAA . . . . AC . . . . T . A A AA . A . T TC A CATA ACT .
blockSeqs : . AA . . . . . . . . . . . . . ATA . ATTTGATATATATT A G . T . CTA . . T . T . GAA TT . . . G T . TTTGTTATA T . ATGAGTGTAA . . . . AG . . . . G . G A AA . A . A TA T AATA CCC .
blockSeqs : . CG . . . . . . . . . . . . . ATG . TAGTATCATTGACA A A . T . TTG . . A . G . GAA AC . . . G T . TTTTCCGTA T . ATGGTATAA . . . . AG . . . . T . A A AT . A . T TT A CATA ACC .
blockSeqs : . . . . . . . . . . . . . ATG . TAGTACCATTGGCA A C . T . TTA . . T . A . GTG AA . . . G T . GTTTATATG G . GAGTGAGAA . . . . CA . . . . A . G A AG . T . T TC T C ACC .
blockSeqs : . . . . . . . . . . . . . ATG . TAGTACCATTGACA G C . T . TCA . . C . A . GAA AC . . . A T . ATTTCTGCG A . ATTGGA . . . . AG . . . . A . G . AG . T . A AC A C C .
blockSeqs : . . . . . . . . . . . . . TTG . TAAAGGCATATGGT G A . G . TTG . . T . G . GA AT . . . G T . TTTTTTTA T . ATAAG . . . . AT . . . . A . . . T . . . C TT A C . .
blockSeqs : . . . . . . . . . . . . ATG . TATATCATTGATT G G . G . TTG . . T . G . A A . . . G T . TGCA C . ATAT . . . . AG . . . . T . . . . . . . T . . . .
blockSeqs : . . GTA . ATATCATTAAAA G G . G . TTG . . T . G . G C . . . A T . AATA T . ATAA . . . . AG . . . . T
blockSeqs : . . GT . ATATCATACACT C G . G . TTG . . T . G . . . . . . A . . . T . ATAA . . . . A . . . .
blockSeqs : . ATCATACAGT A G . G . TTG . . T . A . . . . . . . . . . ATGA . . . . . . . . .
blockSeqs : . TATGT A A . A . TTG . . A . G . . . . . . .
blockSeqs : T A C . T . TT . . A . A .
blockSeqs : T C . T . TT . . G . C .
blockSeqs : A C . T . . . . A . . .
blockSeqs : . C . T . . . . A .
blockSeqs : . C . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ACGC ATG************* TAATATCATTGAC************* GAA* ATGGGAA**************** ******* TC CATA***
originalCons : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACG-A-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC------T-A-TAT-CAT-TGACN---ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-A-----A------T--AA------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACC-AAAG-CGTCTAATGAATCGGAT
finalCons : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATA-GGTAACGCA-CATA---A-GCTCGATTTT-TA---T-TT-AAA-A-TT-T-CTGA---T-TATG-------------TAAATC-ATCATTGACTAATATCATTGAC-------------ATGAA-TNT-GTGTGCCATCTTCCGTCGCCATCTTG---------GATCTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGA-GATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-AATGGGAA----------------TTTAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAA-TTGAAACAAATC-TTGAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACATA---ATAT-ACC-AAAG-CGTCTAATGAATCGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT
Alignments
lowQualScore : 44444444444444444444444444444 111 1111111111111111 333333333333333333333333333 1111 11111111111111 3333333333333 1111111 22222222222222
lowQualScore : 66666666666666666666666666666 88888 4 4 0 4 111 8 4 4 4 4 555 3 5555555555555555 2 555555555555555555555555555 2 444 1 2 2 0 888888888 111 1 22 555555 1 22 0 1 22 3 0000 444 2 2 1 1 2 77777 33333333333333 1 3 77 8888888888888 44 3 555 555 6 0 44 66666 555 3 44 44 0 3 77 2 33 7777777 0 0 3 777 1 55 1 00000000000000 4 4
lowQualScore : ............................. ..... . . . . ... . . . . . ... . ................ . ........................... . ... . . . . ......... ... . .. ...... . .. . . .. . .... ... . . . . . ..... .............. . . .. ............. .. . ... ... . . .. ..... ... . .. .. . . .. . .. ....... . . . ... . .. . .............. . .
lowQualScore : 22222222222222222222222222222 00000 0 0 7 0 000 0 0 0 0 0 888 3 9999999999999999 9 777777777777777777777777777 1 888 0 1 0 5 000000000 777 6 88 888888 7 88 6 5 22 1 6666 777 9 9 7 4 9 55555 33333333333333 5 1 33 2222222222222 22 1 444 444 2 5 22 00000 444 1 22 22 3 6 22 2 22 0000000 8 7 8 000 0 88 2 99999999999999 0 0
consensus : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATAGGTNACGTACATA-A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC---TAATAT-CAT-TGA---C-A----TG-A-A-TNT-GTGTGCCATCTTCCGTCGCCATCTTGGAT---------CTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGAGATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-AA--TG--G--G---A--AT--T-TAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAATTG-AAACAAATCTT-GAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACCAAA-G-CGTCTAATGAATCGGAT
Reference ( family-261 ) : NNCCGTCCAGTGGCCGAA-GTCGCCGATC--GGG--------TATAGGTAACGCACATA-A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---T-T-A------T--G----TAAATC-ATCATTGAC---TAATAT-CAT-TGA---C-A----TG-A-A-TNT-GTGTGCCATCTTCCGTCGCCATCTTGGAT---------CTTGTTGTATGGT--TGA------ANTGCGA--GATCAGGCGAGATGAA-AAAAACTATTTA-CAATAT-TTTA-TTCAGTTGA-TNTTTCTAT---------A----TGCTTA-AA--TG--G--G---A--AT--T-TAA---GTT---TT-AAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAT--CAATTG-AAACAAATCTT-GAAAAAANAAAA-------AATAAANTAACGCCAGACGC---TNATTGATTAGTTCATAACAT---AATAT-ACCAAA-G-CGTCTAATGAATCGGAT
gi|1 : -A-A-TCT-GTGTGA-ATCCGTCGTCGCCATCTTGAAT---------CTAAATGTATGGT--TAC------AATGCGA--GATCAGGCGAAAT--A-ACAATCTTTTTG-CATTGT-TTTA-GTCGCTTGA-TTTTGCAAT---------A----TGTTGA-AAT-TA--G--GTT-A--AT--T-TAA---GTT---TG-AAATAACTGCTGGT--C--A-AATTT---T-AA--TAT--ATATTA-AAACAAAGTTT-GAAGAACGAAAAC------AAT--ATTAACATCAGACTT---TGATCAATTAG---GAAAGATC--AATAT-AATAAA-G-CATCTAATGGATCG
gi|10 : ATAGGTAACGTTCATC-A-GCTCAATTCT-TATA--TT-AAA-A-TT-T-CTAA---T-T-A------T--GCGTATAAGTT-ATCATTGA-----AATAC---T-TTA---C-A----T------TAT-ATATA--GTCTTAGATTG---TGTTAGAT---------ATTGTTGTAAGGT--TGA------AATACGA--GATCAGACGGCATAAATAAACACTATTTA-CACTAT-TTTA-TTCAGTGGA-TGTTTATAT---------A----TGCTGA-AA--T-------------AT--TGTGA---G-----GG-AAAT------TT-C--A-----GTTT---T-CA--CAT--CAATTG-AAACAAcactaagactaatgatcgaaatgagtcgttaagcgcaacatctaagcgtaaattgagaaaagtaatccatgaagcgaaatgtagtaataactgctttatcactcgtttttttggcgttgtagattaatatatgtttacatttttatgcgtatcgtattttttctgttatacaaattgatcaaact
gi|12 : aAACTATTAA-CTTTTT-TGTA-CTAAATTGA-TTTTGTTAT---------A----TGTTTA-AA--TGAAG--G---CT-AT--T-TGA---GTT---TT-AAATATGAAAATGT--A--A-CGTGT---T-CG--CAT--CAATTG-AAAGAAATCTT-GA------AAAA-------AATAAACTAA----AGATGC---TCATTGAGTAGTACATTAAAT---AGT
gi|14 : ccCAGTGGCTAAAAGTCTCTGATC--GGGGACCCAACTATAGGTAAAACATATACATGCTCGATTTT-TAT---TT-CAA-A-TA-TATTGA---TGT-A------T--A----TTGGTCGATC-TTGAC---CAATGT-CA---GAAATC-A----TG-A-C-CAT-GTGTGCCATCGTCTGTCGCTATCCTTGAT---------GTCATTGTTCGGT--GGA------AATGCTA--GAT-AGCCGAGAAGAA-AAtaaaaatttatctcatcaattgaaattttgactaaaccaatca
gi|15 : GCCCAGTGG----A-GTT--CAAT--------------TATAGGTAATACACATG-T-GCTTGTTTTT-CAT---TTCAAA-A-TT-T-CTGA---G-T-A------T--G----TAAAGC-ATCAATGAC-------AT-CAT---A---C-AGTA-TG-A-A-TCT-GTGTGCCATCTGCAATTGCCATCTTAGAT---------ATTGTTTTATGGT--TGA------AAT--GA--GATtata
gi|16 : atgggcaaa-A-GCTAGATTTT-TGT---TT-CAATA-TT-T-TGGA---C-T-G------T----------ACT-ATAATGGAC-----ATAT-CAT-TAA---A-AA---TA-A-AATGTTGTGTACTATCTTCCGACGCCATCTTAAAT---------CCTA-TATATGGT--TAA------ATTGCGA--GATAAAACAAG----A-AGAAACTAT-----AAC-T-TTT--TTC---TGA-T-----TAA---------A--------TA-AG--T---G--T---A--AT--T-TAA---GT--------------TGTTTGT--A--A-GG-TT---T-CG--CAT--TAaattattattggtgataatagatttattctaa
gi|17 : GTATATA-A-GATCAAGTTT-TAA---TT-AAA-A-AC-T-CTCAACTT-T-A------T--G----TAAATC-AT---TGAC---TAGTGT-CAT-AGA---CTA----TG-A-A-TAT-ATGTGATATCTTCCATCAACATCTTGAAT---------ATTGTTGTATGGT--TGATCATACAATATGGGCGATCAGTTGAGAT----------TATT-----ATAT-TTCT-TTCATTT---TATTTC
gi|18 : gtttgactatttACATG-A-GCT-GCTTTT-TAT---TTCAAA-A-TT-T-CTGA---T-TTA------TAAG----TTAATC-ATTATTGACATTTGATATATAT-T-------A----TG-A-A-TCT-GTGTGTCATCTGCCGTCTCTATCTTATAT---------CTTATTG------------------------------AAGCGAGATGGA-AT---TTATTAA-CAATTT-TTTG-TTCAGTTGA-
gi|2 : tgaCCGTCCAGTGGTCGA---TGGCCGAGCCTGGC--------TGTAGGGTACCAACATA-A-GCTCGATTTT-TATATTTC-AAA-A-TA-T-CAGA---T-T-A------T--G----CAAATC-TACATTGGC-----ATAT-CAT---A---C-AC---TGCACA-TCT-GTGTGCCATATTCCGCCGCCGTGTCAGAT---------TTTGTTG----------A------ATTGCGA--GTTTAGACGGTATGAA-AAGA--TATT-A-CAATAT-TGTA-TTCAGCTAT-TTTTTCCGT---------A----TGCTTA-AA--CG--GT-G---GTTAT--T-TAT---TTT---TTCAAATAAGTGCTTGT--A--A-GGTTT---T-CG--CAA--AAATTTCAAACACATCTTTGAGAAAATTAGA-------A-TGAGTTACCGCCAGACGC---CAATTGATTAATTTATAAC------ATAT-ACTATT-G-CGACTGATGAATAGGATaat
gi|21 : cACACA-A-GCTTGACTTTATAC---TA-AAA-A-TTCT-CAGA---T-T-T------T--G----GTAATC-ATCATTGACAAATAATAT-CGT-AGA---C-------------TAT-GTGTCCCATTGTTCATCACCATCTTGGAT---------CTCACTGAATGAT--GGA------ACCGTGC--GATCAGaatgtgcgactaatgtaccgaaatgcgacgtaacactcaaagtgataccagcga
gi|23 : T---------CTTGTTGGATGGT--TGA------GTTGCCA--GATAATACGAGATGAA-TAAAA-TGTTTAACAATAT-TTTA-TTCTGTTGATTGTTTATAT---------G----TGCTTA-AA--TG--GTAT---A--AT--T-CAG---GTTAAATT-AAA
gi|24 : agctAAATGCTTGT--A--C-AGTTT---T-CG--CAT--CTAGTG-AAACATATTTT-AAAAAATTAAAA-------AAAAAAAT--CG-CAGACGC---ATATTAAATATTTCACAAC------ATAT-CCCAAA---CATCTAATAACTCGAA
gi|25 : GA---T-T--------T--GGT--TAAACC-ATCATTGAC---TAGTAT-CAT-TGA---CAA----TG-A-G-TGT-ATGTGTCAGCGTCCGTCGCCATAGTGGAT---------C---TCCTATACT--TGA------ATTGTAG--GACCAGGTGA
gi|26 : ----TAAACA-ATTATTGAC---TAGTAC-CAT-TGG---C-AA---TG-A-G-TGT-GTGTGCCAGCGTCCATCGCCATATTGGAT---------C---TCGTATGGCTGTGA------ATTGTGG--GATAAGGTGAt
gi|27 : ttggtC-ATCATTGAC---TAGTAC-CAT-TGA---C-AA---TG-A-G-TGT-ATGTGCCAGCGTCCGTCACCATATTGGAT---------C---TCGTATGGT--TGA------ATTGTGG--GACCAGGTGAGA
gi|28 : AAG-G-CGTCTAATGAATCG
gi|29 : ataagcat-CAT-TGG---C-AA---TG-A-G-TGT-ATGTGCCAGCGTCCGTCGCCATATTGGAT---------C---TCGTATGGT--TGA------ATTGTGT--GACCAGGTGAGATcactgaaataaacgatcgaaatagggacgtaaatagcaacatctaacgtaaagtacggaatgtaat
gi|3 : aaacctgA--GAACAGATGAGATGAA-AAA--CTATTTA-CGATAT-TTAA---CAAT--A-TTTTTTT-T---------A----T--TGAGAA--T----------A--AT--T-AAA---GTT---TT-GAATAAGTGCTTGT--ATAA-GGTTT---T-TG--CAT--CATTTG-AAACAAATCT--GAAGAAAAAAAA-------GATAAAATAATGCCAGTCAC---TAATTGATTGATTAATTATACAAGAATAT-ACCAAA-G-TGTCCATTGAATTAGATattttta
gi|30 : TTGAC---TAAAGG-CATATGG---T-A----TG-A-C-TAT-GTGGGCCAACATCCGTCACCGTCTTGG-T---------CTTGTT---CGGT--TGA------AATGCGA--A---AGGCAAGATaatttgagtaaatgggatatgtaaagtgggaaataaaatgaaaaatataatttaaaaaacaaaatcactacttttatgttaatatctcagtaggatagattattatatattcacatttcggcctgtttatcattttctgatccccctgatttatatcgtaatatgctttgcccagtatgtaacgtctttttcgtggatattgattaatatgtataagat
gi|32 : AT-AAT-TGA---C-AGTCATT-A-A-TCT-GTGTGTCAT--------GTCATCTTGGAT---------CTTGTTGCATGGT--TGA------A
gi|33 : cG-A-A-TCT-ATGTGTCGTCTGCAGTCTCCATCTTAGAT---------CTT-TTAGA------TGA------AAGGCGA--GATa
gi|4 : TAA---T-T-A------T--G----TGAATC-GCCACTGAC---TA----------------------TG-T-A-TCT-GTGTACCATATCCCGTTACCATCTTAGATAGCGTTGATCTTGTTATGTGGC--TGT------AGTTCTA--TGCCAAT---AATGTG-AACAACTATTTA-CAATAG-CTAA-TTCAGTTGG-T-----TGC---------A----TGCTAA-AA--TT--G--G---A------T-TAC----TT---TT-AAATAAG-----G---A--A-----T---T-TG--CAT--AAAATG-AAACCATTTTT--------TAAAA-------CATA---CAGCGCCCGGCACGTGTTAATAATAAGTTTATAGCAT---A---T-ACCAAAAG-AGTCTAATGAATAGGA
gi|5 : CCGTTAAGTGACTGAATATCGCTGATC--AGG--------CGT-GGTC-CG-ACATT-A-GCTCGATTTT-TAT---TT-AAA-A-TT-T-CTGA---T-T-G------T--A----TAAATC-ATCATTGAC---T-ATAT-CAT-TGAT--T-A----CG-A-T-TCT-GTGTGAAATCTCCCGTCGCCATATTAGAT---------TTTGTTGTACGGT--TGA------AATGCGA--GATCTGACGAGATGAA-AAAAAATATTTA-CAATAT-TTTA-TCCAGTTGA-TATTTCTGC---------G----TGCTTA-AA--T----------A--AT--T-TAA---GTT---TT-AAATAAGTGCTAGT--A--A-GGTTT---T-TG--CAT--CAAAAG-AAACAAATCTT-AAAAAAAAAAAA-------AAAAAAATTATGCCAGGCGC---TTTTTGATTAGTTCATTACAT---AATAT-ACCAAA-G-CGTCTTATGAATCGGATaaatgtgacaccagtttaaggaaaagggatataaagtgagaaatagctccaacaatatgaaaattaataccgaaagattacagaaaatgattattatatgttttcatttagatcagttgtt
gi|6 : gtATTTG-AATTAT-TCCA-TTCAATTGA-TTTTACTAT---------AATTATGTTCA-AA--TA--A--G---A--ATAAT-TTA---GTT---TC-AAATAAGTGTGTGT--A--A-TGTTTATTT-TG--CAT--CAAATG-ACACAAATCTT-GAAATGATAAAA-------AATAAATCAATGCAAAACAC---TAATTGATTAGTACATAAAAT---ATTGTAAATAAA-GACATCCAATGAATCAGAT
gi|7 : -AAAAACTATTTA-CAATAT-TCCA-TT-----GA-AA-----AT---------A----T----A-AA--TG--A--G----------T-CAATGCGTT---TTTAAATAATTGCTTGTCAA--ACGGTCA---TACGGTCATACCGTTTG-AAATAGACCTT-GAAAAAAGAAAACTAAACCGATAAATTAACGCCAGACGC---TCAATAATTAGT-----ACAT---AA-------AAA-G-CGTCTTACGACTCGGATtaacactaatcatctaaatgaacagtatgaaatggaacaagtacgaaattgttgcacaattcctattttatgctcatcatcatgttggtgatgtatattactatatgtttacattgatgtctattttttgatataatagtatgctttgccggt
gi|8 : atT---------G----TGCTTG-AGAGTG--A--G---A--AT--T-TAA---ATT---TT-TAATAGGTTCTCGT--A--A-GGGCT---T-TG--CAT--CAATTG-AAACACATTTT----AAAAGAAAA-------A------TGACGCCAGACAC---TT-TTTATTTGTTTATAA--------------CAAA-G-CGTCAAATGCATTGGATtgagataacaaaaattgaaatggttagttatgtttcaaaatataatgtaaagtgcaaagtgttatttacatcgatagttatataatctagactaggtggggtagatcatgatatcttcacgttttatgcgtaagcctgtttatgcaattt
gi|9 : gTT--GAG--------TATAGGTTATGTACACA-A-GCTCGAATTT-TGT---TT-AAA-AACT-T-CTGA---T-T-ACATGTAT--G----TAAATC-TTCATTGAC---T------------------------G-A-A-TCT-GTGTGCCAGCTTCCATTGCCGTGTTGGAC---------ATTGTTGTATAGT--TGA------GATGCTA--AATCATCTGAGATGAA-AAA--TTATTTT-CAATACATGTACTTTAAT--A-TATTTTTATGTATGCTTAA----TGCTTA-AA--TG--A--GTGTA--AT--T-TAA---GTT---TT-AAATAAGGGCTTGT--A--A-GGTTT---T-TG--TAT--AAAaaattgattccaatttaccgaaatgggatgtaaagtatggaaaatgaaactagcaaattttaaatgttatttaaatactaaaatggatttcaaaattgctagttcatgcttatgttgttgggatcgattattatccatttaatttttgtacatgcatcataatgaatgtatcttattt
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTAATGAATCGGATAATTTTAGACCAATTTACCAAAATGGGGCTGTAAAGTGTGAAATGAGACGAGTAAAATGGATTCCCAAAATTGCTATTTTATGCTTATCTTGGTGGTATAGATTATTTTTCATAATGTTCAAAATTGGGCCAGATTATTGTTTTCGGATATCTCTGATTAATATAATATGCTTTGCCCATTATGCTATCTTTTCATAGTTCAAACAAAAGGAAATAT
Unaligned ( gi|13 ): GATGTTAAATGCGAAACGAAACTTGCGAAAAGTAATTGAAATAGCGAAAAGGATTCCCCAAATCGCTATTTTATGCTTATCTTGTTAATGGAATAGATTATCAAGTATTCATGTTTAGGCCAGTTTATTGTTTTCTGATATCTTTGATAAAAAGAATAACATAACTTGTCCATTATTTAATTAATTGGCACTTATTTC
Unaligned ( gi|19 ): ATTCAGAACATCTCACCCAATAAAAAAGCCTCTAATGAATCAAATAATTTCAGAGCAATTTATCGAAAAAAAGTGAAGTGAAAAATGAAACAAGCAAAAGGTAATTTAACTAGTGAAATGGATTGACAAAATTGCTTTTTTATGCTAAGCTTGATG
Unaligned ( gi|20 ): TTGAAATGGTGAAAAGATTTTCCACAATTATGTTGTTATCTTAGCAGGAAAGATAACTTTATGGTCATATTTAGGCTATTTTATATCTGTTTTCTGATATCTCTGATTACATGTAATATGTAATTTGTTTTATCT
Unaligned ( gi|22 ): ATATTAGTGGAATAGCTTATTATATGTTCATATAATATTTAGTCCAGTTCATTGTTTTAAGACATCTCTGATTAATAATATTATCGTAAGTTTTGCACATTATTTAGGCGACACCTGTTTC
Unaligned ( gi|31 ): AAGAACAAAACAAAAACTGTGTCAATTATTTCATTCCGGCAAATGTGTCTTTTAATGAACATAACATATTTTTATATAAATACT