lowQualScore : 11111111111111111111111111111111 2222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111
lowQualScore : 1 555555 3333333333 1 222 2 2222 22 1 777777777777777777 111 111 11 22222222 111111 111 22222222222222222222222222222222 5555555555555555555555555555555555555555555555555 11 333333333333333 22 11 22222 2 33333 11111 55555555 1 4444444444444 111 44444444444 222222 55555555555555555 11111 111 0000000000000000000000000000000000000000000000 444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1111 111111111111111111111111111 11
lowQualScore : 0 222222 2 5555555555 4 3 5 111 0 4 7 4444 77 2 888888888888888888 8 777 444 5 66 7 11 88888888 1 3 8 99 8 666666 222 0 8 11111111111111111111111111111111 3 0 66 3333333333333333333333333333333333333333333333333 8 88888 555 8 55 3 0 888888888888888 77 3 8 5 11 0 0 11 7 0 33333 99 1 1 4 55555 3 0 66666 7 33333333 6 2 8888888888888 33 6 3 2 777 44444444444 4 7 0 6 3 2 999999 66666666666666666 5 88888 5 777 3 1111111111111111111111111111111111111111111111 2 6 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666 77 0 7 6 6666 000000000000000000000000000 22
lowQualScore : . ...... . .......... . . . ... . . . .... .. . .................. . ... ... . .. . .. ........ . . . .. . ...... ... . . ................................ . . .. ................................................. . ..... ... . .. . . ............... .. . . . .. . . .. . . ..... .. . . . ..... . . ..... . ........ . . ............. .. . . . ... ........... . . . . . . ...... ................. . ..... . ... . .............................................. . . . ................................................................................. .. . . . .... ........................... ..
lowQualScore : 5 555555 5 5555555555 0 0 0 555 0 0 3 0000 55 3 000000000000000000 0 222 000 0 44 8 00 44444444 4 8 0 00 0 666666 000 8 0 11111111111111111111111111111111 2 8 88 7777777777777777777777777777777777777777777777777 0 66666 888 0 00 2 6 444444444444444 00 2 0 0 22 8 6 00 8 6 66666 22 6 4 0 00000 2 2 77777 3 22222222 7 0 8888888888888 88 0 5 2 555 00000000000 2 0 2 5 5 5 000000 00000000000000000 6 33333 0 555 2 6666666666666666666666666666666666666666666666 5 0 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222 55 2 0 0 3333 999999999999999999999999999 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCNCCAACTCGCGGANGCACAGAGTACACCCAGTGGCCNGGCATTAANATCTATTTTTGACAANGAATAAATACTTAT---ATAAGCCCTAACTTATATGCCTG---TTNA--------A-ATTT-AATAAAGGAGACAAAA---TAGAAACAATTCATTTACAA--TTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C-AAAAA--GATTTTGTTTATGGAGAACT-GGGTAGGATGCCTTTT--TAAA---T----------TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACA-----AATGA-GA-ANAAGTACACTAAA-AAAGTNTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT-AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGATTTA----ATGACGCTTGGCTTTNTG----CAAAATGCTGGA-----AATTACATATCAAACTTT-T-TTTNAGCCGTATTTAAATACATTAAAT-T--AAAAATTCCGTACTAGTTTTACTAAANTAAGAGTCTC---ATCT--------C--ATAGACTTGCNATTGAAACCGGT-----NGATGGGCTAAACCT---------G----T--AAGTATACCAGTTAATCA--GAGAAAATGTA---GTATATGC-----AANAACTCAGCGAAAAATGTAGTNCATGATATATGCAATATTTTAGAGGATGAATTTNATTTTATGTTAG--------------A---ATG---T----------------------AA-----T----------------------G--TTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGCAA---AAA--C------NTT-------T-------TTTTAATAATGATAAAGTACGGGTT
Reference ( gi|1 ) : ATACATGTATACATGCTTTAATTGTTTTTAGTGTTGTATGCGGATGATATAATTATATTTGCTGACAGTAGTGATGAGTTGCAAAGAAGCTTAAATGTTGTGTCAGAGTATTGTAAAAGATTGAACTTAAGTGTTAATAAGTTGAAAAATAGGTAGATTATCTGAAAATCTCTTATTTTATTATAATACTAAAGAAATAGAAAGAGTAAATACGTTTGTTATTTTGGGCCTTGCTTTTACAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTAT---GTAAGTTC--ACTTATATACCTG---TTGG--------G-GTTT-AATAAAGGAGCCAAAA---TAGAAACCATTCACTTACAA--TTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C-GAAAA--GATTTTGTTTATGGAGAACT-GGGTAGGATGCCGTTT--TAAA---T----------T-----T-CTTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACA-----AATGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT-TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGTTTT----ATGACGCTAGGCTTTAT-----CAAAATGTTGGA-----AATTACATATCAAACTTTATGTGTCCGCCATATTTAAATACAGTAAA-----AAAAATTCCGTACTAGTTTTGCTAAATTAAAAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGTTAATTA--AAGAAAATATA---GTATATGC-----AAGGACTTA---AATAAT----TCCTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAG--------------A---GTG---T----------------------AA-----T----------------------G--CTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGCAA---GAA--T------ATT-------T-------TTTTAGCAATGATAAAGTACGGGTT
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTTA-CAATGAATAAATACTTGT---ATAAGCTC--ATTGATATACCGG---TT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGAT---ATAaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|7 : AATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------A-ATTTGAATGAAAGAAACAAAA---TATAAACATTTCATTTACAA--TTGTTTA----AGCACTTAATGGGAGT-AAA-AACAG-CACA---CAGAACA--G-TTTTGTTTATGGAGAACT-TGGTAGGATGC--------A------------------------CTTTGG----ATAAAA----G--------TATTGAAGACA-----ACTGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAAA-CGATTTTAAAAATAACCCAAATATAA---AAAAA-----AATCATT-AATTAAAGACTT------TGA---------TTTA----ATGAGGCTTGGCTccggtatagatagataagatgtattcgattagcctgtagcgcgactccaaaattatcggaatgaagtgtgaggttttgtttattgcagacaaatgagaaa
gi|11 : cCTTATAT-CCTG---TTTATTCTCCATA-ATTT-AATAAAGGAAACAAAA---TAGAAACCATTCATTTACAA--TTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAG-CGCA---C-AAAAC--GATTTTGTTTATGGAGAGCTGGGGTAGAACGCCTTTT--
gi|3 : TGG--------GTATTT-ATTCAAGG---TAAAAATATAGAAATAGTTCTGATACAA--TTTTGTA----AATATTTGTTATAAGT-TA-GAAAAC-TACA---C-TGAAT--AATTTTATTTATGTAGAAAT-GGGTAGAATGTCTTTT--TAAA---TGTAGCGAGGAT-----T-CT---ATATTATAAACTTTTGAATAAATATATTACAATCA-----AATGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA--------------GAGAATAGGTGTTTACTAATTGAAA-CCTTG--CTTTGATCTTCGGGATGGA----ATGACACCTGATTTCATGACAACAAAATGCAGTA-----AATT
gi|2 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggacTT-AATAAAGCAGACAAAA---TGGAAAACATTCATTTACAA--TTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAG-CACAAAGC-AAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGCCTTTTCCTAAC---T----------TGAGA-TACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAG----TTAAA-A-----CA---GAT-GTTGAAA-------------ATAATCCAAAT-AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGATTTT----ATG-TACTTGACAGTTT-----CAATATGCTGGA-----AA
gi|4 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgtttta-AATAAAGGAGACAAAA---TA-AAATAATTTATTTACAAAATTTA-------AGCGCTTATTAGGGGT-AAAAAAAAAACACA---C-AAAAA--GATTTTGTTTATGGAGAACT-GTGTAGGTTGCC-TTT--TAAAAACT----------TAAGGCT-ATTTAATATTATCAAA--TTGGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGAAAATA----------AG---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTT----TTTATG----C--AATGTTAAACAAAGAATCAAAAATCAA--TTTGTGcgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|5 : aCA-----AATGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT-AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGATTTA----ATGAGGCTTGGCTTTTT-----CAAATTGTTGGA-----AATaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|2 : -----AATTACATTTCAAACTTT-----TAAACCATATTTTAATA-ATTAAATTTAAGAAAATTCCGTTCTAGTTTCACTAAAATAAGAGTCTT---AACT--------T--ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGTTAATCA--GAGAA---ACA---GTA---G------AAG-------------AT----TC---AATA---------TTTTGGATGATGAATTTAATTTTATGTTAG--------------ACTTATT---T----------------------AA-----T----------------------GACTTTTATTT-AAATTATTACTGGAAAAGACCGAATATGCAA---AAA--C------TTG-------TAGAACA-TTTTAATAATGATAAAGTACGGGgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|5 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattat-----AATTACATATCAAACTTTTTTTTTCAGTCGTATTTAAATACATTAAATGT--AAGAA---------AATTTTACTAAATTAAAATACTC---ATCT--------C--AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGATAATCA--GAGAAA
gi|4 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatATACATAAATTCAATGCA-----AAA----CCGTACTAGTTTTACTAAAGTAAGAGTCTC---ATCT--------C--ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGTTAATCA--AAGAAAAT
gi|12 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaAA-----AATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGTGAATC----AGTGAGTGTA---GTAT
gi|8 : tatTATACCAGT-AATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGTGCATAATTTATATA---ATGACTT----------------------AAGAAATT----------------------G--TTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGCTG---AAA--T------TTTTCAAAC-T-------TTTTAATAATGATAAAGAAAAGGTT
gi|10 : AATCA--GAGAAAATGTA---GTATATGC-----AA
gi|10 : TATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAG--------------A---ATG---T----------------------AA-----TTTATAGAACGACTTAAATCAATG--CTTTATTACAAGTTATTACTGGTAAAGACTGAATATGCAA---AAA--C-------TT-------TGAGAACATTTTAATAATGA-GAAGTACGGGTtattttagaggatgaatttaattttatgttagaatgtaatttatagaacgacttaaatcaatgctttattacaagttattactggtaaagactgaatatgcaaaaactttgagaacattttaataatgagaagtacgggt
gi|13 : aatcagagaaaatgtagTATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAG--------------A---GTG---TAGTTTATATAATGACTTTAGAAAA-----T----------------------G--TTTTATTCCAATTTATAACTGGAAAAGACCGAATATGCAT---GAA--
gi|14 : agaaactgtagAAAATACCAAATATGCAAAACGAA--C------AAC-------G-------TGTTAATAATGATAAAGTACGGcttgttgaa
gi|15 : tacaagAAAAGACTGAATATGCAA---AAAACTTGTAGAATT-------G-------TTTAAATAATGATAAAGTA
gi|16 : tagGAATATGCAA----AA--T------CTTGTAGAACT-------TTTTGATATTGATAAAGTACGGG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 4444 11 111 33 1 111 4444444444 1111 111 111 5555555555555555555555 11 111111 11111 11 1111 111111111 111 3333333 222222222 1111 111111 1111111111 111 33333333333 222222 44444444444444444 111 1 33333 555555555555555555555 999999999999999999999999999999999999999999999999999999 11 66666666666666666666
lowQualScore : 1 1 4444 0 1 0 0 0 3 0 1 1 7 44 1 3 777 11 00 0 777 1111111111 5 2 3 2 4444 1 6 5 6 111 222 6 6 2222222222222222222222 5 1 11 555555 99999 66666 00 6 3 2222 6 0 3 6 7 1 3 5 444444444 3 1 6 2 1 44 99 6 111 44 3 99 6666666 1 999999999 2 3 2222 444444 7777777777 1 1 444 33333333333 2 3 3 1 111111 11111111111111111 111 4 0 3 33333 1 999999999999999999999 1 6 8 111111111111111111111111111111111111111111111111111111 11 8 5 888 1 99999999999999999999 5
lowQualScore : . . .... . . . . . . . . . . .. . . ... .. .. . ... .......... . . . . .... . . . . ... ... . . ...................... . . .. ...... ..... ..... .. . . .... . . . . . . . . ......... . . . . . .. .. . ... .. . .. ....... . ......... . . .... ...... .......... . . ... ........... . . . . ...... ................. ... . . . ..... . ..................... . . . ...................................................... .. . . ... . .................... .
lowQualScore : 0 0 0000 7 0 7 7 7 7 7 0 0 3 00 0 2 555 33 77 5 555 8888888888 7 5 0 5 2222 7 7 2 7 777 555 7 7 2222222222222222222222 6 0 22 000000 44444 77777 22 7 3 8888 7 3 3 7 8 0 2 2 555555555 5 0 7 5 0 77 22 7 777 55 5 22 6666666 2 000000000 0 2 0000 111111 2222222222 0 0 000 22222222222 2 8 8 0 000000 00000000000000000 777 0 0 7 33333 0 888888888888888888888 0 0 8 000000000000000000000000000000000000000000000000000000 00 2 0 888 0 66666666666666666666 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAATCTATTTTTGACAATGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---CAAAAN--GATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACA-----AATGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCT---CATCT-C---------ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAG-G--TA-TTTATATA---ATGACT-TA----A---AT-----------------TG--TTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
Reference ( family-2577 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCNCCAACTCGCGGANGCACAGAGTACACCCAGTGGCCNGGCATTAANATCTATTTTTGACAANGAATAAATACTTATA---TAAGCCCTAACTTATATGCCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACAATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---CAAAAA--GATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACA-----AATGA-GA-ANAAGTACACTAAA-AAAGTNTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTNTG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCGTATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAANTAAGAGTCT---CATCT-C---------ATAGACTTGCNATTGAAACCGGT-----NGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAAATGTA-GTATATGC-----AANAACTCAGCGAAAAATGTAGTNCATGATATATGCAATATTTTAGAGGATGAATTTNATTTTATGTTAG--------------A---ATG----TA----A----------------------TG--TTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACNT------T------T------TTTT-AATAATGATAAAGTACGGGTT
gi|1 : CAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTATG---TAAGTTC--ACTTATATACCTG---TTGG--------GGTTT-AATAAAGGAGCCAAAATAGAAACCATTCACTTACAATTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---CGAAAA--GATTTTGTTTATGGAGAACT-GGGTAGGATGC-CGTTT--TAAA--T----T-----T-CTTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACA-----AATGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT---TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGT-TT---TATGACGCTAGGC--TTTAT-----CAAAATGTTGGAAATTACATATCAAACTTTATGTGTC--CGCCATATTTAAATACAGTAAA------AAA---A-ATTC-CGTACTAGTTTTGCTAAATTAAAAGTCT---CATCT-C---------ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATTAAAGAAAATATA-GTATATGC-----AAGGACTTA---AATAAT----TCCTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAG--------------A---GTG----TA----A----------------------TG--CTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGC-AAGA---ATAT------T------T------TTTT-AGCAATGATAAAGTACGGGTT
gi|10 : atacatgtatacatgctttaattgtttttagtgttgtatgcggatgatataattatatttgctgacagtagtgatgagttgcaaagaagcttaaatgttgtgtcagagtattgtaaaagattgaacttaagtgttaataagttgaaaaataggtagattatctgaaaatctcttattttattataatactaaagaaatagaaagagtaaatacgtttgttattttgggccttgcttttaTCAGAGAAAA-TGTAGT-------ATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAG--------------A---ATG----TA----ATTTATAGAACGACTTAAATCAATG--CTTTATTACAAGTTATTACTGGTAAAGACTGAATATGC-AAAA---ACTT------T------GAGAACATTTT-AATAATGA-GAAGTACGGGT
gi|11 : aaCTTATAT-CCTG---TTTATTCTCCATAATTT-AATAAAGGAAACAAAATAGAAACCATTCATTTACAATTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAG-CGCA---CAAAAC--GATTTTGTTTATGGAGAGCTGGGGTAGAACGC-CTTTT--
gi|12 : -T---AAA---ATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGT---GAATCAGTG--AGTGTA-GTAT
gi|13 : taAAACTGTAGT-------ATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAGAGTGTAGTTTATATA---ATGACTTTAGAAAA----------------------TG--TTTTATTCCAATTTATAACTGGAAAAGACCGAATATGC-ATGA---ACTT------G------T------T
gi|14 : agTACAAGAAAATACCAAATATGC-AAAACGAACAA------C------G------TGTT-AATAATGATAAAGTACGGgaa
gi|15 : TAGAAAAGACTGAATATGCAAAAA---ACTTGTAGAAT------T------GTTTAAATAATGATAAAGTA
gi|16 : GAATATGC-AAAA---TCTTGTAGAAC------T------TTTT-GATATTGATAAAGTACGGG
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTT-ACAATGAATAAATACTTGTA---TAAGCTC--ATTGATATACCGG---TT-A--------AAT----ATAGATGAGATA
gi|2 : TT-AATAAAGCAGACAAAATGGAAAACATTCATTTACAATTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAG-CACAAAGCAAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGC-CTTTTCCTAAC--T----TGAGA-TACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAGT----TAAA-ACA--------GAT-GTTGAA-------------AATAATCCAAAT---AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---TATG-TACTTGACAGTTT-------CAATATGCTGGAA-----ACGTCGATTTAT-T-TTTA--AGCAATG-TTAAACA----AAAT-T---GAtattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|2 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttaAATTACATTTCAAACTTT-T----A--AACCATATTTTAATA-ATTAAAT-TTAAGAA---A-ATTC-CGTTCTAGTTTCACTAAAATAAGAGTCT---TAACT-T---------ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGT---TAATCAGAGAAACAGTA-GAAGATTC-----AATATTTTGG------ATG------ATGA----------ATTT---------AATTT-----TATGTTAG--------------ACTTATT----TA----A----------------------TGACTTTTATT-TAAATTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------G------TAGAACATTTT-AATAATGATAAAGTACGGGtctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|3 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattatATTT-ATTCAAGGTAAAAATATAGAAATAGTTCTGATACAATTTTGTA----AATATTTGTTATAAGT-TA-GAAAAC-TACA---CTGAAT--AATTTTATTTATGTAGAAAT-GGGTAGAATGT-CTTTT--TAAA--TGTAGCGAGG-A-TTCTA-TATTATAAACTTTTGAATAAATATATTACAATCA-----AATGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA----------------GAGAATAGGTGTTTACTAATTGAAA-CCTTGCTTTG--ATCTTCGGGAT-GG---AATGACACCTGAT--TTCATGACAACAAAATGCAGTAAATT
gi|4 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggt-AATAAAGGAGACAAAATA-AAATAATTTATTTACAAAATT-TA----AGCGCTTATTAGGGGT-AAAAAAAAAACACA---CAAAAA--GATTTTGTTTATGGAGAACT-GTGTAGGTTGC-CTTTT--AAAAACT----TAAGGCT-ATTTAATATTATCAAA--TTGGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGA---------AAAT---AAG---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTT------TTTATG----CAA
gi|4 : aTAAATACAT-AAAT-T---CAATGCA-AAAC-CGTACTAGTTTTACTAAAGTAAGAGTCT---CATCT-C---------ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGT---TAATCAAAGAAAATtgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|5 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcaCA-----AATGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGAT-TT---AATGAGGCTTGGC--TTTTT-----CAAATTGTTGGAAAT
gi|5 : AATTACATATCAAACTTT-T-TTTTTCAGTCGTATTTAAATACATTAAATGT---AAG---A-A----------AATTTTACTAAATTAAAATACT---CATCT-C---------AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGA---TAATCAGAGAAAgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|7 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatAATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------AATTTGAATGAAAGAAACAAAATATAAACATTTCATTTACAATTGTTTA----AGCACTTAATGGGAGT-AAA-AACAG-CACA---CAGAAC--AGTTTTGTTTATGGAGAACT-TGGTAGGATGCACTTT-----------------GG-------------ATAAAA------------GTATTGAAGACA-----ACTGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAA-ACGATTTTAAAAATAACCCAAATATAAAA---AAAAA-------TCATT-AATTAAAGACTT--T-------------GAT-TT---AATGAGGCTTGGC--T
gi|8 : cTATACCAGTAATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGTGCATAATTTATATA---ATGACT-TA----AGAAAT-----------------TG--TTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGC-TGAA---ATTT------TTCAAACT------TTTT-AATAATGATAAAGAAAAGGTT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGATA---TA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA
Alignments
lowQualScore : 2222 111 111 11 111 4444444444 1111 111 5555555555555555555555 111111 11111 11 1111 2222222222222222 111 3333333 222222222 1111 111111 1111111111 111 33333333333 222222 44444444444444444 111 1 33333 666666666666666666666 7777777777 444444444444 66666666666666666666
lowQualScore : 1 8888 0 0 1 0 3 3 222 1 0 444 88 7 777 1111111111 5 2 1 2 4444 1 6 5 6 111 99 1 6 6 2222222222222222222222 5 1 0 66 555555 99999 66666 00 6 3 2222 6 0 3 6 7 1 4444444444444444 3 1 6 2 1 44 99 6 111 44 3 99 3333333 1 999999999 3 2222 444444 7777777777 1 1 444 33333333333 1 3 3 1 111111 11111111111111111 111 1 0 1 33333 000000000000000000000 1 6 0 5555555555 11 0 666666666666 8 5 888 99999999999999999999 5
lowQualScore : . .... . . . . . . ... . . ... .. . ... .......... . . . . .... . . . . ... .. . . . ...................... . . . .. ...... ..... ..... .. . . .... . . . . . . ................ . . . . . .. .. . ... .. . .. ....... . ......... . .... ...... .......... . . ... ........... . . . . ...... ................. ... . . . ..... ..................... . . . .......... .. . ............ . . ... .................... .
lowQualScore : 0 3333 7 2 0 2 0 2 222 2 8 000 33 0 555 8888888888 7 5 0 5 2222 7 7 2 7 777 22 0 7 7 2222222222222222222222 6 0 8 22 000000 44444 77777 22 7 0 8888 7 3 3 7 8 0 5555555555555555 5 0 7 5 0 77 22 7 777 55 5 22 4444444 2 000000000 2 0000 111111 2222222222 0 0 000 22222222222 4 8 2 0 444444 00000000000000000 777 0 0 0 33333 888888888888888888888 0 0 8 4444444444 66 8 444444444444 2 0 888 66666666666666666666 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGAAAT---TGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
Reference ( family-2577 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAATCTATTTTTGACAATGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAANGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAG---GT---A-TTTATATAATGACTT---AAAT---TGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
gi|1 : CAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTATG---TAAGTTC--ACTTATATACCTG---TTGG--------GGTTT-AATAAAGGAGCCAAAATAGAAACCATTCACTTACAATTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--GAAAAGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CGTTT--TAAA--T----T-----T-CTTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACAAA-----TGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT---TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGT-TT---TATGACGCTAGGC--TTTAT-----CAAAATGTTGGAAATTACATATCAAACTTTATGTGTC--CGCCATATTTAAATACAGTAAA------AAA---A-ATTC-CGTACTAGTTTTGCTAAATTAAAAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATTAAAGAAAATATA-GTATATGC-----AAGGACTTA---AATAAT-T--C-CTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAG-----------------AGTG---T---AA-----TGCTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGC-AAGA---ATAT------T------T------TTTT-AGCAATGATAAAGTACGGGTT
gi|10 : atacatgtatacatgctttaattgtttttagtgttgtatgcggatgatataattatatttgctgacagtagtgatgagttgcaaagaagcttaaatgttgtgtcagagtattgtaaaagattgaacttaagtgttaataagttgaaaaataggtagattatctgaaaatctcttattttattataatactaaagaaatagaaagagtaaatacgtttgttattttgggccttgcttttaTCAG-AGAAAATGTAGT-------ATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAGAATGT---AATTTATAGAACGACTT---AAATCAATGCTTTATTACAAGTTATTACTGGTAAAGACTGAATATGC-AAAA---ACTT------T------GAGAACATTTT-AATAATGA-GAAGTACGGGT
gi|11 : aaCTTATAT-CCTG---TTTATTCTCCATAATTT-AATAAAGGAAACAAAATAGAAACCATTCATTTACAATTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAG-CGCA---C--AAAACGATTTTGTTTATGGAGAGCTGGGGTAGAACGC-CTTTT--
gi|12 : -T---AAA---ATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGT---GAATCAGTG--AGTGTA-GTAT
gi|13 : taAAACTGTAGT-------ATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAGAGTGT---AGTTTATATAATGACTTTAGAAAA---TGTTTTATTCCAATTTATAACTGGAAAAGACCGAATATGC-ATGA---ACTT------G------T------T
gi|14 : agTACAAGAAAATACCAAATATGC-AAAACGAACAA------C------G------TGTT-AATAATGATAAAGTACGGgaa
gi|15 : TAGAAAAGACTGAATATGCAAAAA---ACTTGTAGAAT------T------GTTTAAATAATGATAAAGTA
gi|16 : GAATATGC-AAAA---TCTTGTAGAAC------T------TTTT-GATATTGATAAAGTACGGG
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTT-ACAATGAATAAATACTTGTA---TAAGCTC--ATTGATATACCGG---TT-A--------AAT----ATAGATGAGATA
gi|2 : TT-AATAAAGCAGACAAAATGGAAAACATTCATTTACAATTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAG-CACAAAGCAAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGC-CTTTTCCTAAC--T----TGAGA-TACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAGT----TAAA-ACA--------GAT-GTTGAA-------------AATAATCCAAAT---AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---TATG-TACTTGACAGTTT-------CAATATGCTGGAA-----ACGTCGATTTAT-T-TTTA--AGCAATG-TTAAACA----AAAT-T---GAtattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|2 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttaAATTACATTTCAAACTTT-T----A--AACCATATTTTAATA-ATTAAAT-TTAAGAA---A-ATTC-CGTTCTAGTTTCACTAAAATAAGAGTCTT---AACT--------T--ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGT---TAATCAGAGAAACAGTA-GAAGATTC-----AATATTTTGG------ATG------ATGA----------ATTT---------AATT-----TTATGTTAG--------A-CTTATTTAATGAC--------------TTTTATT-TAAATTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------G------TAGAACATTTT-AATAATGATAAAGTACGGGtctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|3 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattatCATTTATTAGTCAAGCTTTGAAAGCAATTTTTAA-AACGAATAAATATTTGAA---TAAATT
gi|3 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtATTT-ATTCAAGGTAAAAATATAGAAATAGTTCTGATACAATTTTGTA----AATATTTGTTATAAGT-TA-GAAAAC-TACA---C--TGAATAATTTTATTTATGTAGAAAT-GGGTAGAATGT-CTTTT--TAAA--TGTAGCGAGG-A-TTCT-ATATTATAAACTTTTGAATAAATATATTACAATCAAA-----TGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA----------------GAGAATAGGTGTTTACTAATTGAAA-CCTTGCTTTG--ATCTTCGGGAT-GG---AATGACACCTGAT--TTCATGACAACAAAATGCAGTAAATTagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggtatttattcaaggtaaaaatatagaaatagttctgatacaattttgtaaatatttgttataagttagaaaactacactgaataattttatttatgtagaaatgggtagaatgtctttttaaatgtagcgaggattctatattataaacttttgaataaatatattacaatcaaatgatgataaaggtatagataaggtgtacaagatgttaaaagaatatatggaaaataagagaataggtgtttactaattgaaaccttgctttgatcttcgggatggaatgacacctgatttcatgacaacaaaatgcagtaaatt
gi|4 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggt-AATAAAGGAGACAAAATA-AAATAATTTATTTACAAAATT-TA----AGCGCTTATTAGGGGT-AAAAAAAAAACACA---C--AAAAAGATTTTGTTTATGGAGAACT-GTGTAGGTTGC-CTTTT--AAAAACT----TAAGGCT-ATTTAATATTATCAAATT--GGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGAAAATAA------------G---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTT------TTTATG----CAA
gi|4 : aTAAATACAT-AAAT-T---CAATGCA-AAAC-CGTACTAGTTTTACTAAAGTAAGAGTCTC---ATCT--------C--ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGT---TAATCAAAGAAAATtgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|5 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcaCAAA-----TGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGAT-TT---AATGAGGCTTGGC--TTT-TT----CAAATTGTTGGAAAT
gi|5 : AATTACATATCAAACTTT-T-TTTTTCAGTCGTATTTAAATACATTAAATGT---AAG---A-A----------AATTTTACTAAATTAAAATACTC---ATCT--------C--AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGA---TAATCAGAGAAAgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|7 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatAATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------AATTTGAATGAAAGAAACAAAATATAAACATTTCATTTACAATTGTTTA----AGCACTTAATGGGAGT-AAA-AACAG-CACA---C--AGAACAGTTTTGTTTATGGAGAACT-TGGTAGGATGCACTTT-----------------GG-------------ATAAAA------------GTATTGAAGACAAC-----TGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAA-ACGATTTTAAAAATAACCCAAATATAAAA---AAAAA-------TCATT-AATTAAAGACTT--T-------------GAT-TT---AATGAGGCTTGGC--T
gi|8 : cTATACCAGTAATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGT--GCATAA-TTTATATAATGACTTAAGAAAT---TGTTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGC-TGAA---ATTT------TTCAAACT------TTTT-AATAATGATAAAGAAAAGGTT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGATA---TA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA
Alignments
lowQualScore : 2222 111 111 11 111 4444444444 1111 111 5555555555555555555555 111111 11111 11 1111 2222222222222222 111 3333333 222222222 1111 111111 1111111111 111 33333333333 222222 44444444444444444 111 1 33333 666666666666666666666 55555555555555555555555555555555555 66666666666666666666
lowQualScore : 1 8888 0 0 1 0 1 3 222 4 0 444 88 7 777 1111111111 5 2 1 2 4444 1 6 5 6 111 99 1 6 6 2222222222222222222222 5 1 0 66 555555 99999 66666 00 6 3 2222 6 0 3 6 7 1 4444444444444444 3 1 6 2 1 44 99 6 111 44 3 99 3333333 1 999999999 3 2222 444444 7777777777 1 1 444 33333333333 1 3 3 1 111111 11111111111111111 111 1 0 1 33333 000000000000000000000 1 6 0 33333333333333333333333333333333333 8 5 888 99999999999999999999 5
lowQualScore : . .... . . . . . . ... . . ... .. . ... .......... . . . . .... . . . . ... .. . . . ...................... . . . .. ...... ..... ..... .. . . .... . . . . . . ................ . . . . . .. .. . ... .. . .. ....... . ......... . .... ...... .......... . . ... ........... . . . . ...... ................. ... . . . ..... ..................... . . . ................................... . . ... .................... .
lowQualScore : 0 3333 7 2 0 2 0 2 222 2 8 000 33 0 555 8888888888 7 5 0 5 2222 7 7 2 7 777 22 0 7 7 2222222222222222222222 6 0 8 22 000000 44444 77777 22 7 0 8888 7 3 3 7 8 0 5555555555555555 5 0 7 5 0 77 22 7 777 55 5 22 4444444 2 000000000 2 0000 111111 2222222222 0 0 000 22222222222 4 8 2 0 444444 00000000000000000 777 0 0 0 33333 888888888888888888888 0 0 8 44444444444444444444444444444444444 2 0 888 66666666666666666666 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGA--AATTGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
Reference ( family-2577 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGA--AATTGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
gi|1 : CAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTATG---TAAGTTC--ACTTATATACCTG---TTGG--------GGTTT-AATAAAGGAGCCAAAATAGAAACCATTCACTTACAATTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--GAAAAGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CGTTT--TAAA--T----T-----T-CTTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACAAA-----TGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT---TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGT-TT---TATGACGCTAGGC--TTTAT-----CAAAATGTTGGAAATTACATATCAAACTTTATGTGTC--CGCCATATTTAAATACAGTAAA------AAA---A-ATTC-CGTACTAGTTTTGCTAAATTAAAAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATTAAAGAAAATATA-GTATATGC-----AAGGACTTA---AATAAT-T--C-CTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAGA------------GTGTAA---------------TGCTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGC-AAGA---ATAT------T------T------TTTT-AGCAATGATAAAGTACGGGTT
gi|10 : atacatgtatacatgctttaattgtttttagtgttgtatgcggatgatataattatatttgctgacagtagtgatgagttgcaaagaagcttaaatgttgtgtcagagtattgtaaaagattgaacttaagtgttaataagttgaaaaataggtagattatctgaaaatctcttattttattataatactaaagaaatagaaagagtaaatacgtttgttattttgggccttgcttttaTCAG-AGAAAATGTAGT-------ATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAGAATGT---AATTTATAGAACGACTT-AAATCAAT-GCTTTATTACAAGTTATTACTGGTAAAGACTGAATATGC-AAAA---ACTT------T------GAGAACATTTT-AATAATGA-GAAGTACGGGT
gi|11 : aaCTTATAT-CCTG---TTTATTCTCCATAATTT-AATAAAGGAAACAAAATAGAAACCATTCATTTACAATTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAG-CGCA---C--AAAACGATTTTGTTTATGGAGAGCTGGGGTAGAACGC-CTTTT--
gi|12 : -T---AAA---ATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGT---GAATCAGTG--AGTGTA-GTAT
gi|13 : taAAACTGTAGT-------ATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAGAGTGT---AGTTTATATAATGACTTTAGA--AAATGTTTTATTCCAATTTATAACTGGAAAAGACCGAATATGC-ATGA---ACTT------G------T------T
gi|14 : agTACAAGAAAATACCAAATATGC-AAAACGAACAA------C------G------TGTT-AATAATGATAAAGTACGGgaa
gi|15 : TAGAAAAGACTGAATATGCAAAAA---ACTTGTAGAAT------T------GTTTAAATAATGATAAAGTA
gi|16 : GAATATGC-AAAA---TCTTGTAGAAC------T------TTTT-GATATTGATAAAGTACGGG
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTT-ACAATGAATAAATACTTGTA---TAAGCTC--ATTGATATACCGG---TT-A--------AAT----ATAGATGAGATA
gi|2 : TT-AATAAAGCAGACAAAATGGAAAACATTCATTTACAATTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAG-CACAAAGCAAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGC-CTTTTCCTAAC--T----TGAGA-TACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAGT----TAAA-ACA--------GAT-GTTGAA-------------AATAATCCAAAT---AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---TATG-TACTTGACAGTTT-------CAATATGCTGGAA-----ACGTCGATTTAT-T-TTTA--AGCAATG-TTAAACA----AAAT-T---GAtattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|2 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttaAATTACATTTCAAACTTT-T----A--AACCATATTTTAATA-ATTAAAT-TTAAGAA---A-ATTC-CGTTCTAGTTTCACTAAAATAAGAGTCTT---AACT--------T--ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGT---TAATCAGAGAAACAGTA-GAAGATTC-----AATATTTTGG------ATG------ATGA----------ATTT---------AATT-----TTATGTTAGA-CTT---A-TT----TAATGAC-------------TTTTATT-TAAATTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------G------TAGAACATTTT-AATAATGATAAAGTACGGGtctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|3 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattatCATTTATTAGTCAAGCTTTGAAAGCAATTTTTAA-AACGAATAAATATTTGAA---TAAATT
gi|3 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtATTT-ATTCAAGGTAAAAATATAGAAATAGTTCTGATACAATTTTGTA----AATATTTGTTATAAGT-TA-GAAAAC-TACA---C--TGAATAATTTTATTTATGTAGAAAT-GGGTAGAATGT-CTTTT--TAAA--TGTAGCGAGG-A-TTCT-ATATTATAAACTTTTGAATAAATATATTACAATCAAA-----TGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA----------------GAGAATAGGTGTTTACTAATTGAAA-CCTTGCTTTG--ATCTTCGGGAT-GG---AATGACACCTGAT--TTCATGACAACAAAATGCAGTAAATTagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggtatttattcaaggtaaaaatatagaaatagttctgatacaattttgtaaatatttgttataagttagaaaactacactgaataattttatttatgtagaaatgggtagaatgtctttttaaatgtagcgaggattctatattataaacttttgaataaatatattacaatcaaatgatgataaaggtatagataaggtgtacaagatgttaaaagaatatatggaaaataagagaataggtgtttactaattgaaaccttgctttgatcttcgggatggaatgacacctgatttcatgacaacaaaatgcagtaaatt
gi|4 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggt-AATAAAGGAGACAAAATA-AAATAATTTATTTACAAAATT-TA----AGCGCTTATTAGGGGT-AAAAAAAAAACACA---C--AAAAAGATTTTGTTTATGGAGAACT-GTGTAGGTTGC-CTTTT--AAAAACT----TAAGGCT-ATTTAATATTATCAAATT--GGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGAAAATAA------------G---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTT------TTTATG----CAA
gi|4 : aTAAATACAT-AAAT-T---CAATGCA-AAAC-CGTACTAGTTTTACTAAAGTAAGAGTCTC---ATCT--------C--ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGT---TAATCAAAGAAAATtgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|5 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcaCAAA-----TGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGAT-TT---AATGAGGCTTGGC--TTT-TT----CAAATTGTTGGAAAT
gi|5 : AATTACATATCAAACTTT-T-TTTTTCAGTCGTATTTAAATACATTAAATGT---AAG---A-A----------AATTTTACTAAATTAAAATACTC---ATCT--------C--AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGA---TAATCAGAGAAAgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|7 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatAATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------AATTTGAATGAAAGAAACAAAATATAAACATTTCATTTACAATTGTTTA----AGCACTTAATGGGAGT-AAA-AACAG-CACA---C--AGAACAGTTTTGTTTATGGAGAACT-TGGTAGGATGCACTTT-----------------GG-------------ATAAAA------------GTATTGAAGACAAC-----TGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAA-ACGATTTTAAAAATAACCCAAATATAAAA---AAAAA-------TCATT-AATTAAAGACTT--T-------------GAT-TT---AATGAGGCTTGGC--T
gi|8 : cTATACCAGTAATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAG--TGCATAA-TTTATATAATGACTTAAGA--AATTGTTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGC-TGAA---ATTT------TTCAAACT------TTTT-AATAATGATAAAGAAAAGGTT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGATA---TA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA
Alignments
lowQualScore : 2222 111 111 11 111 4444444444 1111 111 5555555555555555555555 111111 11111 11 1111 2222222222222222 111 3333333 222222222 1111 111111 1111111111 111 33333333333 222222 44444444444444444 111 1 33333 666666666666666666666 55555555555555555555555555555555555 66666666666666666666
lowQualScore : 1 8888 0 0 1 0 1 3 222 4 0 444 88 7 777 1111111111 5 2 1 2 4444 1 6 5 6 111 99 1 6 6 2222222222222222222222 5 1 0 66 555555 99999 66666 00 6 3 2222 6 0 3 6 7 1 4444444444444444 3 1 6 2 1 44 99 6 111 44 3 99 3333333 1 999999999 3 2222 444444 7777777777 1 1 444 33333333333 1 3 3 1 111111 11111111111111111 111 1 0 1 33333 000000000000000000000 1 6 0 33333333333333333333333333333333333 8 5 888 99999999999999999999 5
lowQualScore : . .... . . . . . . ... . . ... .. . ... .......... . . . . .... . . . . ... .. . . . ...................... . . . .. ...... ..... ..... .. . . .... . . . . . . ................ . . . . . .. .. . ... .. . .. ....... . ......... . .... ...... .......... . . ... ........... . . . . ...... ................. ... . . . ..... ..................... . . . ................................... . . ... .................... .
lowQualScore : 0 3333 7 2 0 2 0 2 222 2 8 000 33 0 555 8888888888 7 5 0 5 2222 7 7 2 7 777 22 0 7 7 2222222222222222222222 6 0 8 22 000000 44444 77777 22 7 0 8888 7 3 3 7 8 0 5555555555555555 5 0 7 5 0 77 22 7 777 55 5 22 4444444 2 000000000 2 0000 111111 2222222222 0 0 000 22222222222 4 8 2 0 444444 00000000000000000 777 0 0 0 33333 888888888888888888888 0 0 8 44444444444444444444444444444444444 2 0 888 66666666666666666666 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGA--AATTGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
Reference ( family-2577 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGA--AATTGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
gi|1 : CAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTATG---TAAGTTC--ACTTATATACCTG---TTGG--------GGTTT-AATAAAGGAGCCAAAATAGAAACCATTCACTTACAATTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--GAAAAGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CGTTT--TAAA--T----T-----T-CTTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACAAA-----TGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT---TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGT-TT---TATGACGCTAGGC--TTTAT-----CAAAATGTTGGAAATTACATATCAAACTTTATGTGTC--CGCCATATTTAAATACAGTAAA------AAA---A-ATTC-CGTACTAGTTTTGCTAAATTAAAAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATTAAAGAAAATATA-GTATATGC-----AAGGACTTA---AATAAT-T--C-CTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAGA------------GTGTAA---------------TGCTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGC-AAGA---ATAT------T------T------TTTT-AGCAATGATAAAGTACGGGTT
gi|10 : atacatgtatacatgctttaattgtttttagtgttgtatgcggatgatataattatatttgctgacagtagtgatgagttgcaaagaagcttaaatgttgtgtcagagtattgtaaaagattgaacttaagtgttaataagttgaaaaataggtagattatctgaaaatctcttattttattataatactaaagaaatagaaagagtaaatacgtttgttattttgggccttgcttttaTCAG-AGAAAATGTAGT-------ATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAGAATGT---AATTTATAGAACGACTT-AAATCAAT-GCTTTATTACAAGTTATTACTGGTAAAGACTGAATATGC-AAAA---ACTT------T------GAGAACATTTT-AATAATGA-GAAGTACGGGT
gi|11 : aaCTTATAT-CCTG---TTTATTCTCCATAATTT-AATAAAGGAAACAAAATAGAAACCATTCATTTACAATTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAG-CGCA---C--AAAACGATTTTGTTTATGGAGAGCTGGGGTAGAACGC-CTTTT--
gi|12 : -T---AAA---ATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGT---GAATCAGTG--AGTGTA-GTAT
gi|13 : taAAACTGTAGT-------ATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAGAGTGT---AGTTTATATAATGACTTTAGA--AAATGTTTTATTCCAATTTATAACTGGAAAAGACCGAATATGC-ATGA---ACTT------G------T------T
gi|14 : agTACAAGAAAATACCAAATATGC-AAAACGAACAA------C------G------TGTT-AATAATGATAAAGTACGGgaa
gi|15 : TAGAAAAGACTGAATATGCAAAAA---ACTTGTAGAAT------T------GTTTAAATAATGATAAAGTA
gi|16 : GAATATGC-AAAA---TCTTGTAGAAC------T------TTTT-GATATTGATAAAGTACGGG
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTT-ACAATGAATAAATACTTGTA---TAAGCTC--ATTGATATACCGG---TT-A--------AAT----ATAGATGAGATA
gi|2 : TT-AATAAAGCAGACAAAATGGAAAACATTCATTTACAATTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAG-CACAAAGCAAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGC-CTTTTCCTAAC--T----TGAGA-TACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAGT----TAAA-ACA--------GAT-GTTGAA-------------AATAATCCAAAT---AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---TATG-TACTTGACAGTTT-------CAATATGCTGGAA-----ACGTCGATTTAT-T-TTTA--AGCAATG-TTAAACA----AAAT-T---GAtattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|2 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttaAATTACATTTCAAACTTT-T----A--AACCATATTTTAATA-ATTAAAT-TTAAGAA---A-ATTC-CGTTCTAGTTTCACTAAAATAAGAGTCTT---AACT--------T--ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGT---TAATCAGAGAAACAGTA-GAAGATTC-----AATATTTTGG------ATG------ATGA----------ATTT---------AATT-----TTATGTTAGA-CTT---A-TT----TAATGAC-------------TTTTATT-TAAATTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------G------TAGAACATTTT-AATAATGATAAAGTACGGGtctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|3 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattatCATTTATTAGTCAAGCTTTGAAAGCAATTTTTAA-AACGAATAAATATTTGAA---TAAATT
gi|3 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtATTT-ATTCAAGGTAAAAATATAGAAATAGTTCTGATACAATTTTGTA----AATATTTGTTATAAGT-TA-GAAAAC-TACA---C--TGAATAATTTTATTTATGTAGAAAT-GGGTAGAATGT-CTTTT--TAAA--TGTAGCGAGG-A-TTCT-ATATTATAAACTTTTGAATAAATATATTACAATCAAA-----TGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA----------------GAGAATAGGTGTTTACTAATTGAAA-CCTTGCTTTG--ATCTTCGGGAT-GG---AATGACACCTGAT--TTCATGACAACAAAATGCAGTAAATTagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggtatttattcaaggtaaaaatatagaaatagttctgatacaattttgtaaatatttgttataagttagaaaactacactgaataattttatttatgtagaaatgggtagaatgtctttttaaatgtagcgaggattctatattataaacttttgaataaatatattacaatcaaatgatgataaaggtatagataaggtgtacaagatgttaaaagaatatatggaaaataagagaataggtgtttactaattgaaaccttgctttgatcttcgggatggaatgacacctgatttcatgacaacaaaatgcagtaaatt
gi|4 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggt-AATAAAGGAGACAAAATA-AAATAATTTATTTACAAAATT-TA----AGCGCTTATTAGGGGT-AAAAAAAAAACACA---C--AAAAAGATTTTGTTTATGGAGAACT-GTGTAGGTTGC-CTTTT--AAAAACT----TAAGGCT-ATTTAATATTATCAAATT--GGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGAAAATAA------------G---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTT------TTTATG----CAA
gi|4 : aTAAATACAT-AAAT-T---CAATGCA-AAAC-CGTACTAGTTTTACTAAAGTAAGAGTCTC---ATCT--------C--ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGT---TAATCAAAGAAAATtgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|5 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcaCAAA-----TGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGAT-TT---AATGAGGCTTGGC--TTT-TT----CAAATTGTTGGAAAT
gi|5 : AATTACATATCAAACTTT-T-TTTTTCAGTCGTATTTAAATACATTAAATGT---AAG---A-A----------AATTTTACTAAATTAAAATACTC---ATCT--------C--AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGA---TAATCAGAGAAAgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|7 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatAATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------AATTTGAATGAAAGAAACAAAATATAAACATTTCATTTACAATTGTTTA----AGCACTTAATGGGAGT-AAA-AACAG-CACA---C--AGAACAGTTTTGTTTATGGAGAACT-TGGTAGGATGCACTTT-----------------GG-------------ATAAAA------------GTATTGAAGACAAC-----TGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAA-ACGATTTTAAAAATAACCCAAATATAAAA---AAAAA-------TCATT-AATTAAAGACTT--T-------------GAT-TT---AATGAGGCTTGGC--T
gi|8 : cTATACCAGTAATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAG--TGCATAA-TTTATATAATGACTTAAGA--AATTGTTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGC-TGAA---ATTT------TTCAAACT------TTTT-AATAATGATAAAGAAAAGGTT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGATA---TA
blockSeqs : A CAAC G T T GAC T GCG TA A AGG TATTCTCCAT G G C G GCTT A G T A AAG AA C G A TAAATGTAGCGAGGAT A T TT TAAATA ACAAT ATTAA AT T A TAAC T G G G A TCCAAATAAGAAA A T A G C TA CG G GGA AC T AG ATGACAA G TTTTTTC T CATT TTTAA TGCAAAAC A T CGC GCATTCTGCTA T C T T AGATGA ACTTACAGTGT AAT G T T TGATA GCGAAAAATGTAGTACATGT T T AATGTAATTTATAGAACGACTTAAATCAAT A A CGA TGAGAACA A
blockSeqs : T . T G T AC C . . G . AA . G C G . A . G . . . C . . CCTAACTTGAGATAC A A TT CAAAAC GAAGA . A . C ACAC . T . A G CCCAAATATAAAA T C . G T TA . . . TC T . ATG T TTTTA T ATT TGT ATATTTT T A . T T T A A T GACACTTA . C . A . GAGAAAATGTAGT T A AGTGTAGTTTATATAATGACTTTAGAAAAT C . . GTAGAATT .
blockSeqs : A T . AA A . . . A . G A G . G . G . . . T . . AAAAACTTAAGGCTA . A . TT AAAA . T . A ACAT . A . G G CCCAAATAAG T C . T C TA . . . AG T . TT A TA . CAT TT AATTC A G . C C T C A T GT . A . GATGATGA T T TGCATAATTTATATAATGACTTAAGAAATT C . . GTAGAACT .
blockSeqs : . . T A T . A . A . . . A . . GG . . . G . . A . C A . T . . T G T C . G C . . . . AG T . . . TT AA . T . C A . . . A GT . T . . ACTTATTTAATGAC . . . GTAGAACA .
blockSeqs : . . A . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . T . . . . . TTCAAACT .
blockSeqs : . . . GT .
blockSeqs : . . CG
blockSeqCons : CATCGAGGT************* ** CCCAAATAAG****** T****** AT** TT**** AGCGTAATTTATATAACGACTTAAGAAAAT***** GTAGAACT************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTT--TAAA--T----TGAGG-T-CTTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTATG----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATACATTAAAT-T---AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGA-TGT---A-TTTATATAATGACTT-AGA--AATTGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTT------T------T------TTTT-AATAATGATAAAGTACGGGTT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAG-CACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTTCATCGAGGT-------------TTTAATATTATAAAATT--GGGCAAATNTATTAAAGACAAA-----TGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAATAAG------AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC--TTTT------CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--AGCCATATTTAAATAAT--AAATT----AAA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGAGCGTAATTTATATAACGACTTAAGAAAAT-----GTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAA---ACTTGTAGAACT------------TTTT-AATAATGATAAAGTACGGGTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222 111 111 11 111 4444444444 1111 1 111 222222222222222222222 3333333333333 11111 11 1111 111111111 111 1 3333333 22222222222 111111 2222222 2222222 111 111 33333333333 222222 44444444444444444 111 1 33333 666666666666666666666 2222222
lowQualScore : 1 8888 0 0 1 0 1 3 222 4 0 444 88 7 777 1111111111 5 2 1 2 4444 1 3 5 111 99 1 6 6 111111111111111111111 1 1 6666666666666 99999 66666 00 6 3 2222 6 0 3 6 7 1 3 5 444444444 3 1 6 2 1 44 99 6 111 44 6 6666666 7 0 2 6 44444444444 5 0 999999 3333333 4444444 111 6 9999 1 1 444 33333333333 1 3 3 1 111111 11111111111111111 111 1 0 1 33333 000000000000000000000 1 6 0 888 5 11 4 7777777 1 8 5 11 3 1 5
lowQualScore : . .... . . . . . . ... . . ... .. . ... .......... . . . . .... . . . ... .. . . . ..................... . . ............. ..... ..... .. . . .... . . . . . . . . ......... . . . . . .. .. . ... .. . ....... . . . . ........... . . ...... ....... ....... ... . .... . . ... ........... . . . . ...... ................. ... . . . ..... ..................... . . . ... . .. . ....... . . . .. . . .
lowQualScore : 0 3333 7 2 0 2 0 2 222 2 8 000 33 0 555 8888888888 7 5 0 5 2222 7 3 2 777 22 0 7 7 222222222222222222222 0 0 0000000000000 44444 77777 22 7 0 8888 7 3 3 7 8 0 2 2 555555555 5 0 7 5 0 77 22 7 777 55 0 0000000 3 6 2 0 88888888888 0 8 222222 5555555 6666666 777 7 0000 0 0 000 22222222222 4 8 2 0 444444 00000000000000000 777 0 0 0 33333 888888888888888888888 0 0 8 888 6 66 6 0000000 0 2 0 88 4 9 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAGCACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTTT--AAA--T----CGAGG---TTTAATATTATAAAATTTTGGGCAAATNTATTAAAGACA-----AATGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC-TTTAT-----CAAAATGCTGGAAATTACATGTCAAACTTT-T-TTTN--A-GCCATATT------TAAAT--A-AT-AAAT-T---A-AA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGAGCGTAATTTATATAATGACTTAAGAAAATGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAAACTTGTAGAACTTTTT-AATAATGATAAAGTACGGGTT
Reference ( family-2577 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTGGTGGNTCTC----TCGCGGAGGTACAGAATACACTCANTGGTCAGGCATTAAAANCTATTTTTGACAACGAATAAATACTTATA---TAAGTTC--ACTTATATACCTG---TTNA--------AATTT-AATAAAGGAGACAAAATAGAAACNATTCATTTACAATTTTGTA----AGCGCTTATTGGGAGT-AAAGAAAAGCACA---C--AAAACGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CTTTTC--A----T----CGAGGT--TTTAATATTATAAAA--TTGGGCAAATNTATTAAAGACA-----AATGA-GA-AAAAGTACACTAAA-AAAGTTTATTTGAT-GTTAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---AATGACGCTTGGC-TTT-T-----CAAAATGCTGGAAATTACATATCAAACTTT-T-TTTN--A-GCCATATT------TAAAT--A-AT-AAAT-T---A-AA---A-ATTC-CGTACTAGTTTTACTAAATTAAGAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATCAGAGAAANTGTA-GTATATNC-----AATAACTCAG-GAAAAATGTAGT-CATGATATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGAGCGTAATTTATATAACGACTTAAGAAAATGTTTTATTCCAAGTTATTACTGGAAAAGACCGAATATGC-AAAAACTTGTAGAACTTTTT-AATAATGATAAAGTACGGGTT
gi|1 : CAGTTGGTGGCTCTT----TCGCAGAGGTACAGAATGTAATTATTTGTCAGGCATTAAAAGCTATTTTTG-CAATGAATAAATACTTATG---TAAGTTC--ACTTATATACCTG---TTGG--------GGTTT-AATAAAGGAGCCAAAATAGAAACCATTCACTTACAATTTAGTA----AGCGCTTATTGGGAGT-AAAGAAAAGCACA---C--GAAAAGATTTTGTTTATGGAGAACT-GGGTAGGATGC-CGTTTT--AAATTT----C-------TTTAATATTATAAAATTTTGGGCAAACTTATTAAAGACA-----AATGA-GA-AAAAGTACATTAAA-AAGGTTTATTTGAT-GTTAAAAAGCGATGTTGAAAATAACCCAAAT---TAG---AAAAATTGGTGTTCATT-ATTGAAAGACTTGCACTGTGATCTT--GGGT-TT---TATGACGCTAGGC-TTTAT-----CAAAATGTTGGAAATTACATATCAAACTTTATGTGTC--C-GCCATATT------TAAATACA-GT-AAA------A-AA---A-ATTC-CGTACTAGTTTTGCTAAATTAAAAGTCTC---ATCT--------C--ACAGACTTGCCATTGAAACCGGT-----AGATGGGCTAAACCT---------G----T--AAGTATACCAGT---TAATTAAAGAAAATATA-GTATATGC-----AAGGACTTA---AATAAT-T--C-CTTGATATATGCAAACTTTTAGAGGATGAATTTCATTCTATATTAGAGTGT----------------------AATGCTTTATTTCAAGTTTTTACTGAAAAAGACCGAATATGC-AAGAA--TAT----TTTTTT-AGCAATGATAAAGTACGGGTT
gi|10 : atacatgtatacatgctttaattgtttttagtgttgtatgcggatgatataattatatttgctgacagtagtgatgagttgcaaagaagcttaaatgttgtgtcagagtattgtaaaagattgaacttaagtgttaataagttgaaaaataggtagattatctgaaaatctcttattttattataatactaaagaaatagaaagagtaaatacgtttgttattttgggccttgcttttaTCAG-AGAAAATGTAGT-------ATATGCAATATTTTAGAGGATGAATTTAATTTTATGTTAGAATGTAATTTATAGAACGACTTAAATCAATGCTTTATTACAAGTTATTACTGGTAAAGACTGAATATGC-AAAAACTTTGAGAACATTTT-AATAATGA-GAAGTACGGGT
gi|11 : aaCTTATAT-CCTG---TTTATTCTCCATAATTT-AATAAAGGAAACAAAATAGAAACCATTCATTTACAATTTTGCAGCTTAGCGCTTATTTAG-GTGAAATAAAAGCGCA---C--AAAACGATTTTGTTTATGGAGAGCTGGGGTAGAACGC-CTTTT
gi|12 : -T---A-AA---ATATTTTCGTATTAGTTTTACCAAATTAGGAGTTTCCGCATCTGCATTCTGCTAATATACCTGCTATTGATACCAAT-----TGATGGGCTAAATCT---------GACACTTAAAGAACACTGGT---GAATCAGTG--AGTGTA-GTAT
gi|13 : taAAACTGTAGT-------ATATGTAATATTTAAGAGGATGAATATCATTTTATGTTAGAGTGTAGTTTATATAATGACTTTAGAAAATGTTTTATTCCAATTTATAACTGGAAAAGACCGAATATGC-ATGAACTTGTTGAA
gi|14 : agTACAAGAAAATACCAAATATGC-AAAA---CGAACAACGTGTT-AATAATGATAAAGTACGG
gi|15 : TAGAAAAGACTGAATATGCAAAAAACTTGTAGAATTGTTTAAATAATGATAAAGTA
gi|16 : GAATATGC-AAAATCTTGTAGAACTTTTT-GATATTGATAAAGTACGGG
gi|2 : CAGTTGGTGAATCACCAACTCGCAGATGTACAAAATACACTCAGTGGCCAGGCATTAACATCTATTTTT-ACAATGAATAAATACTTGTA---TAAGCTC--ATTGATATACCGG---TT-A--------AAT----ATAGATGAGATA
gi|2 : TT-AATAAAGCAGACAAAATGGAAAACATTCATTTACAATTTTGTA----AGCGCGTACTGGGAGT-AGAGAAAAGCACAAAGCAAAAAACGATTGTGTCTATAAACATCT-TGATAGGATGC-CTTTTCCTAAC--T----TGAGATACTTTAATTTTATAAAATTTTGGG----TTTATT--------------TG-------AAGT----TAAA-ACA--------GAT-GTTGAA-------------AATAATCCAAAT---AAGAAAAAAAAATAGTGTT-ATT-ATTGAAAGACTTGCTCTGTAATCTT--GGAT-TT---TATG-TACTTGACAGTT-T-----CAATATGCTGGAA-----ACGTCGATTTAT-T-TTTA--A-GCAATG-T------TAAAC--A----AAAT-T---G-Atattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|2 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttaAATTACATTTCAAACTTT-T----A--A-ACCATATT------TTAAT--A-ATTAAAT-TTAAG-AA---A-ATTC-CGTTCTAGTTTCACTAAAATAAGAGTCTT---AACT--------T--ATAGTCTTGCAATTGAAACCGGTAGATGAGATGAGTTGAACCT---------G----T--GTGTATACCAGT---TAATCAGAGAAACAGTA-GAAGATTC-----AATATTTTGG------ATG------ATGA----------ATTT---------AATT-----TTATGTTAG------ACTTATTTAATGAC-----------TTTTATT-TAAATTATTACTGGAAAAGACCGAATATGC-AAAAACTTGTAGAACATTTT-AATAATGATAAAGTACGGGtctggcagactcaccgattccattatagctacatattataattacatttcaaacttttaaaccatattttaataattaaatttaagaaaattccgttctagtttcactaaaataagagtcttaacttatagtcttgcaattgaaaccggtagatgagatgagttgaacctgtgtgtataccagttaatcagagaaacagtagaagattcaatattttggatgatgaatttaattttatgttagacttatttaatgacttttatttaaattattactggaaaagaccgaatatgcaaaaacttgtagaacattttaataatgataaagtacggg
gi|3 : cagttggtgaatcaccaactcgcagatgtacaaaatacactcagtggccaggcattaacatctatttttacaatgaataaatacttgtataagctcattgatataccggttaaatatagatgagatatattcgacaaacttataggaagttcggtgttttattaataaagcagacaaaatggaaaacattcatttacaattttgtaagcgcgtactgggagtagagaaaagcacaaagcaaaaaacgattgtgtctataaacatcttgataggatgccttttcctaacttgagatactttaattttataaaattttgggtttatttgaagttaaaacagatgttgaaaataatccaaataagaaaaaaaaatagtgttattattgaaagacttgctctgtaatcttggattttatgtacttgacagtttcaatatgctggaaacgtcgatttatttttaagcaatgttaaacaaaattgatctggcagactcaccgattccattatagctacatattatCATTTATTAGTCAAGCTTTGAAAGCAATTTTTAA-AACGAATAAATATTTGAA---TAAATT
gi|3 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtATTT-ATTCAAGGTAAAAATATAGAAATAGTTCTGATACAATTTTGTA----AATATTTGTTATAAGT-TA-GAAAACTACA---C--TGAATAATTTTATTTATGTAGAAAT-GGGTAGAATGT-CTTTTTAAA----TGTAGCGAGGA--TTCTATATTATAAACTTTTGAATAAATATATTACAATCA-----AATGATGATAAAGGTA---TAGATAAGGTGTACAAGAT-GTTAAAAGAATATATGGAAAATAA----------------GAGAATAGGTGTTTACTAATTGAAA-CCTTGCTTTG--ATCTTCGGGAT-GG---AATGACACCTGAT-TTCATGACAACAAAATGCAGTAAATTagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggtatttattcaaggtaaaaatatagaaatagttctgatacaattttgtaaatatttgttataagttagaaaactacactgaataattttatttatgtagaaatgggtagaatgtctttttaaatgtagcgaggattctatattataaacttttgaataaatatattacaatcaaatgatgataaaggtatagataaggtgtacaagatgttaaaagaatatatggaaaataagagaataggtgtttactaattgaaaccttgctttgatcttcgggatggaatgacacctgatttcatgacaacaaaatgcagtaaatt
gi|4 : tttagagttgttgtgagaatattgtcacaaatgaatattgatggttactacaaagaaaactcatgatttttaagaaaggttgacggctacaaggaaattttagattttattataatgacaatacagatgaaaaagaacatagtacaaagttatcttaatacaatacgtatttaggacctaatttcgctttatttgacttaactcaggagaaaaagtcatttattagtcaagctttgaaagcaatttttaaaacgaataaatatttgaataaattagttttgtataacataacttatttatttataaatttccctaatactggattactgtagtgacaattggtggactgggt-AATAAAGGAGACAAAATA-AAATAATTTATTTACAAAATT-TA----AGCGCTTATTAGGGGTAAAAAAAAAACACA---C--AAAAAGATTTTGTTTATGGAGAACT-GTGTAGGTTGC-CTTTTA--AAAACT----TAAGGCTATTTAATATTATCAAA--TTGGGCAAAACTGTTAAA-ACAAAATTAATGA-TA-ACATGTTAACTATA-AATGTTTATTTGAT-GTTTAAAAGCGATGTTGA---------AAAT---AAG---AATAATTGATATTCATT-ATTGAAAGACTTGCTCTGTAATCGT--GGATGTTGGAAATGTCGTTT
gi|4 : a------TAAAT--ACAT-AAAT-T---C-AATGCA-AAAC-CGTACTAGTTTTACTAAAGTAAGAGTCTC---ATCT--------C--ACAGAC-------------CGGT-----TAATGAGCTACACCTACTTACAGTG----T--AAGTATTCCAGT---TAATCAAAGAAAATttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcataaatacataaattcaatgcaaaaccgtactagttttactaaagtaagagtctcatctcacagaccggttaatgagctacacctacttacagtgtaagtattccagttaatcaaagaaaat
gi|5 : aaataaaggagacaaaataaaataatttatttacaaaatttaagcgcttattaggggtaaaaaaaaaacacacaaaaagattttgtttatggagaactgtgtaggttgccttttaaaaacttaaggctatttaatattatcaaattgggcaaaactgttaaaacaaaattaatgataacatgttaactataaatgtttatttgatgtttaaaagcgatgttgaaaataagaataattgatattcattattgaaagacttgctctgtaatcgtggatgttggaaatgtcgtttttatgcaatgttaaacaaagaatcaaaaatcaatttgtgaaaaaatggtctggtagactcaacgattctgctagagctacattttataatagcaCA-----AATGT-GA-AAAAATACAC-AAA-AAAGTATATTTGAT-ATCAAAAGGCGATGTTGAAAATAACCCAAAT---AAG---AAAAATTGGTGTTCATT-ATTGAAATACTTGCTCTGTAATCTT--GGAT-TT---AATGAGGCTTGGCTTTT-T-----CAAATTGTTGGAA-----ATGTCAG--TTT-G-TTTT--ATGC---ATTGTAAAACAAAG--A-AT-AAAT-TTGCACAA---A-ATT
gi|5 : AATTACATATCAAACTTT-T-TTTTTCA-GTCGTATT------TAAAT--ACATTAAATGT---A-AG---A-A----------AATTTTACTAAATTAAAATACTC---ATCT--------C--AAAGACTTACCATTGAAAGCGGT-----AGATGGGCTAAACCT---------G----T--AAATACGCCAGA---TAATCAGAGAAAggtttggcagattcaccgattctagtagagctacattttataattacatatcaaactttttttttcagtcgtatttaaatacattaaatgtaagaaaattttactaaattaaaatactcatctcaaagacttaccattgaaagcggtagatgggctaaacctgtaaatacgccagataatcagagaaa
gi|7 : caaatgtgaaaaaatacacaaaaaagtatatttgatatcaaaaggcgatgttgaaaataacccaaataagaaaaattggtgttcattattgaaatacttgctctgtaatcttggatttaatgaggcttggctttttcaaattgttggaaatgtcagtttgttttatgcattgtaaaacaaagaataaatttgcacaaaattggtttggcagattcaccgattctagtagagctacattttatAATAAG--CTTATAGCGCAAATCCTAACTTATGGGACTGAGGTTAA--------AATTTGAATGAAAGAAACAAAATATAAACATTTCATTTACAATTGTTTA----AGCACTTAATGGGAGT-AAA-AACAGCACA---C--AGAACAGTTTTGTTTATGGAGAACT-TGGTAGGATGCACTTT-----------------GG------------ATAAAA------------GTATTGAAGACA-----ACTGA-GA-ACAAAAACATTAAA-AAAGGTTATTTGATGGTTAAAA-ACGATTTTAAAAATAACCCAAATATAAAA---AAAAA-------TCATT-AATTAAAGACTT--T-------------GAT-TT---AATGAGGCTTGGC-T
gi|8 : cTATACCAGTAATTATTCCGAAAATTTGTTTGTATATATTGATAAATAACTCAGCGAAAAATGTAGTACATG-TATATGCAATATTTTAGAGGATGAATTTCATTTTATGTTAGTGCATAATTTATATAATGACTTAAGAAATTGTTTCATTCCAAGTTATTACTGGGAAAGACAGAATATGC-TGAAATTTTTCAAACTTTTT-AATAATGATAAAGAAAAGGTT
gi|9 : CAGTTGGTGGTTCTC----TCGTGGAGGCACAGAGTACACCCAATGATCTGGCATTAAAATCTA---TTGACAAAGAAAAGATACTGATA---TA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAATCTAGTACATATTTAGGTAGTGTTTTCACTTCATATGACTTATTCTTAAAAACATAAACATTTTATCAGGTCAGACTTTAAAATAATTATAAAAATGATTAGAGATATCTTCATTAATTCATCAGCATTTCCGTATTGCATATATTGTACTAATTTGACTAATTAATTTTACCTATACTGGATTATAGCAGTGAGGTTTTGCGATTTATTGAAGGTAAATCTTTAGAAATAGTTCAAACACAATTTTGTAAACGTTTGGAAGCAGTGAAGAATAATTAAAAAAGTATATTTAATAGATAATTTAGATTATGTAAATAGAT
Unaligned ( gi|17 ): AAATACATATATCAATTCACTGATATGCCGGTTAGATTAGATCTAT
Unaligned ( gi|18 ): TTAATTCACTCAAAATTACACAAGTTCAATTTAATTCACTCAAA