lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111
lowQualScore : 777777777777 1111111 11 11111 22222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 22 111 11 11 2 2 333333333333333333 11 22 1 1 55555 22 2 99999999999999 1 11 666666666 11 22222 3 1 222222222222 111 111 1 1111111 3333333 1111111 2222 11111111 444444444 1 333333333333333 6666666666666666666666 2222222222 111111111 222222222222 1111 222 222 111 11 1111111 3333333 1
lowQualScore : 000000000000 6 1 6666666 66 88 77 0 44444 5 6 55555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 3 88888888 44 8 222 4 6 66 88 0 3 0 777777777777777777 00 4 11 3 6 6 0 1 4 99999 11 6 3 6 6 0 44444444444444 5 77 5 3 888888888 8 11 77777 0 7 888888888888 111 4 222 3 3 9 9 5 3 8888888 6666666 8888888 5 5555 55 55555555 77 666 77 5 5 666 7 666666666 4 7 6 5 0 444444444444444 1 6 6 5555555555555555555555 5555555555 1 3 3 1 888888888 5 7 999999999999 3 3 3 3 3 2222 1 000 2 8 333 000 6 11 8888888 0 1 7 5 1 2 0 1111111 0 4 5
lowQualScore : ............ . . ....... .. .. .. . ..... . . ..... .......................................................................................................... . . ........ .. . ... . . .. .. . . . .................. .. . .. . . . . . . ..... .. . . . . . .............. . .. . . ......... . .. ..... . . ............ ... . ... . . . . . . ....... ....... ....... . .... .. ........ .. ... .. . . ... . ......... . . . . . ............... . . . ...................... .......... . . . . ......... . . ............ . . . . . .... . ... . . ... ... . .. ....... . . . . . . . ....... . . .
lowQualScore : 000000000000 0 7 2222222 99 77 99 9 33333 7 7 22222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 8 88888888 88 0 000 0 0 55 55 0 0 0 555555555555555555 00 0 00 0 0 0 5 5 0 00000 00 0 0 0 0 0 55555555555555 5 55 4 2 222222222 0 00 88888 8 0 444444444444 333 3 888 7 7 3 0 3 5 3333333 8888888 6666666 7 7777 99 33333333 99 777 44 7 7 111 3 666666666 7 3 0 7 7 777777777777777 0 5 7 2222222222222222222222 5555555555 5 2 2 0 555555555 7 3 666666666666 5 2 7 2 7 7777 5 000 2 3 333 000 7 00 8888888 8 0 8 0 0 2 7 0000000 0 4 8
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATCGGCAGG--GTCCGTATCGGC-----CA-TACCGCGATACAGTCGTAGGTTATGCATAATTCAG---CA----TT--AAA------------------------N-----CT-AT---------TCAAA--------T-GATC-AAA---TATC----------------GAGAGATCGAA---CAA-ATAGCCTTACT-TCCGTATTCTATTTATAAATCANNNANCTGCAGGGCTCACNCTGTCGNTCGCCAAAGGCGCCGATTTGACGATAAAANAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGATCAAATTCATCAAATCCCCNGGNTGTTGGCCTTNTAAATTGGTTGCATTAAANGTCNGCACCTNTTTTTCGTCGAAGTGCGGCTCCGTTTATGTTNCTTGCAATAACAGGGNTGTTTCAGTGTGTTTTTTTTTCAGCCNTGCAGGTAGAGCTAGTATC-GT-TC--GT-TCT--AGAGNT-CTGACTTTCGCATTTCAAATNTTCAATAATTATGTGTA--TACGAATACTACATTTGNGTAAATAAAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTT-------AA-AAAT---AAAA-TG---A----A--G-A-AAATT-G-GAAA-AAAT-A-AAAACAAACAATAAACTGTTCTGCGGTAA-CATAATCTATTTATAAACATCAGGTAGAGC-TAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCA-ATATGCACGCATGTATA----GAATNCTAAATTGTGTTAATAAAACTCCGTTTGGCATTNAAACTTTAATTTTAATTTGCATATGAA-ANTA--------A---AAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTAACGACAAAATACGAAACTATTTGTCACT---CGATACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGT---ATTGCGTATCGGCCTACCCGTATCGCGGTAC---G---TATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( gi|2 ) : TAGGGCTGTT-------ATACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATCATCAGG--GTCTGTATTGGC-----CA-TACTGCGATACAGTAACAGGTTATGCATAATTCAG---CA----TT--AAA------------------------T-----CT-AT---------TCAAA--------T-GATT-AAA---TATT----------------GAGAGATCAAA---CAA-ATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAA-TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTG-TC----T---------GCCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGC-GGAA-ATAAAAG-----TTTTTTTTCAGCACTGCATGTAGAGCTAGTATC-AT-TCT-GT-TCT--AGACGT-CTGACTACCGCTTTTCAAATGTTAAATAATTATGTGTG--TACAAATACTACAGTTAAGTAAATACAACTCCGTTTTACATTTAA-----ACTTT------CAATTTGCATTT-------AA-AAA----AAAA-TG---A----A--G-A-AAATT-G-AAAA-AAAT-A-AAAACAAACAATAAACCGTTTTGCTGTAA-AACAATATATTCATACACATCAGGTAGAGC-TAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCA-ATATACATACATGTATAA---GAATCCTAAATTGCGTTAATGAAACTCCATTTGGCATTAAAACTTTGATTTTAATTTGCATATGAA-AATA--------A---AAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACT---TGATACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGT---ATTTTGTATCAGCCTACCCATACCGCGGTAC---T---TATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATCAGCAGG--GTCCCTATCGGC-----CA-TACAGCGATACAGTCGTAGGTTACGCATGATTCAATTTCC----TT--AAA------------------------A-----ATAAT---------GCAAAAAAAAAAGA-GAAT-AAAATCTATTCAAATGATCGAAAAAGGAGACATTGAA---CAA-ATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|4 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|7 : attaaagcaacataaatgtaAGGGCTGTT----------TCGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATCGACAGG--GTCCGTATTGAC-----TA-TACGGCAATACAGTCGTAGGTTATGCATAATTCAA---TATCCTTT--AAAATAAAGCCAAAAAACAGCATCAAAT-----CT-AT---------TCAAA--------A-GATC-TTA---TTTC----------------GAGAGGTCAGA---CAA-ATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAA-TAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|6 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATCGACAGG--GTCTGTAACGGC-----CA-TACCGTGATACAGTCGTAGGTTATGCATAATTCAGTTCCC----TTTGAAA------------------------TAAAGCCG-ATAAAACAGCATCAGT--------TCCATTCAAAT--TATC----------------AAATTATCAAATATCAAGATAGCCTTTCT-TTCATATTCTATTTATAAATCAttataccaaagacatttcgcaagtaaataa
gi|15 : GGCTGTTCCGGT--ATACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATCGGCAGG--GTCggtagagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|12 : CTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATCGTCAGG--GTCCATATCGGC-----AA-TACCGCGATTCA--------TTGTACATAATTCAcat
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TAT-----GG--GCATG----GTC-----CA-TACCGTGATACAGCCATAAGTTGTGCATTATTCAG---TA----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCA---GGCAGTCTGTATTAGC-----CG-TACCACGATACAGTcttt
gi|5 : aaggctgaacattcccatataccatTGTATTGGCATTGTCAGTATTGCGATACAGTCATA-GTTATACATAATTCAA---TATCCTTT--AAA------------------------
gi|8 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatatCAG---CA----TA--AAA------------------------G-----CC-AT---------TCAAA--------T-TATC-AAT---TATG----------------GAGTGGTC-AA---C----TAGCCTTACTATCCGTAGTCTATTTATATATataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatcaggtagagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|5 : aataaagccaacaaaaT---------TCAAA--------T-GATC-AAA---TATC----------------GAAAGATCAAA--------TAGCTTTATT-TCCATGTTCTATTTATAAATCAaaggtagagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|1 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatACCATTTCCTCCTTTGATCAAATT---------CCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTTT--CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGGAT-ATTTTAG-----TTTTTTT-CAGCCCTGCATGTAGAGCTAGTATC-A------GT-TCT--AGAGGC-CTGACTTCTGCATTTCAAATGTTTAATAATTATTTGTT--TACAAATACTGCATTCAA-------------------AC-TTTAA-----A-TTT------CAATTTGCATTT-------AA-AAA----AAA--CG---A----A--G-A-AAATT-GGAAAA-AAAT-A-AAA-CAAA---TAAACTGTTTTGC---------AGTCTATTTATAAACATCAGGTAGAGC-TACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCA-GTATGCACATATG---------AATTCTAAATTGTATAAATAGTACTTCAGTTGGCATTTAAACTTTAATTTAAGTTTGCATATGAA-A-TA--------A---AAGGTAATTGGAAATAAATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACT---TGATACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGT---ATTGCGTGTCGGTCTACCTGTATCGTGGTAC---A---TATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTggtagagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|3 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaACTATTTCTTCCTTTG-TT----TCATCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTCGT---AGTGCGGCTCCATTTATGTTTCTTGCAATAAC-GGGATGTTTCAGTGTGTTTTTTTTTCAGCCGTGCATGTAGAGCTAGTATC-G------GT-TCT--ATA-GTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATATAAATACTACATTTAAGTAAATATAACCCCGTTTAACATTCAA-----A-TTT------CAATTTGCATTT-------AA-AAA----AAAACTG---A----A--GAA-AAATT-G-GAAA-AAAT-T-AAAACAAACAATCAACTGTTTTGTAGTAA-CTTAATCTATTTATAAACATCAGGTAGAGC-TAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCA-ATA---AGGCATA---AA---GTATGCTAAATTA---TAA-------CCA------ATCAAA---CTAATTTTAATTTGCATATGAA-ACTA--------A---AAGGAAATTTG-AACAAAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACT---CGATAT-------TGTCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATTGTATTGC---ATATTG-----GCCTACCCGTATCACGGTAC---G---TATCGTATTGGAAGTGGCCTGGCAATACACACCCATAATactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|4 : tatttaggtatataaCAGGTAAAGTTAGTTTCTGT-TCTAGTCTCT--AGAGCT-CCGACT-TCGCATTTCAAA------------ATGCGTA--TATTAATCCTA-AGTTGTGTTAATAAAACGCCATTTGGCATTCA-------CTTT-------AATTTGCATATGAAAATAAA-AAA----AAAA-TG---G----A--A-ACAAAT----AAAA-ACAT-ATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATA
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgtatgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatCAGGTAGAG----TAT--ATATCG-GT-TCTTTAG-C-T-CTGACT-TTGCATTTCATATTTTCAATA----TGTGTA--AACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAA-----ACTTTAATTT-CAATTTGTATTT-------AA-AAATAATAGAA-TG---A----AAGG-A-AAATA-G-AAAA-AAAT-A-AAAACAAACAATAAGCTGTCCTGCAG-AA-CATAATCTATTAATAAACATCAGGTAGAGC-TGGTATCGGTTCTAG--------AGCTCTGACTT----TTTTA-ATATGCATA------TAG---GAATACTATATTGCGATAATAAAACTCTGTTTGGCATTCAAACTATAATTTTAA--TGGAAACAAACAATA--------A---Aagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatCAGGTAGAGCTAGTATT-G------GT-TCT--AGAGCT-CTGATT-TCGCATTTCAAATTTTCAGTA----TGTATA--TATGAATACTAAATTTGCGTTAATAAAACCCTGTTTGACATTCAATCTTTACTTT------TAGTTAGTATTT-------AA-AAATA--AAAG-TACAAA----A--G-G-AAATTAG-AAAA-AAATTA-AACACAGACAATAAACAGTTCTGCGGTCA-TTTGATCTATTTATAAACATCCAGTAGAGC-TAGTATCGATTCTA---------------GACTTCTTTTTTT---TTTATATGC--GTATA----------CAAAT------------ACTTGATT-----TTAA--CTTTAATTTTAATTTGCATATAAA-ATTAAAATGACCA---AAGGAAATTGGAAACAA-------------------ACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTct
gi|4 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatTATGTGTG--TGCCAATACTACTTTTAAGTAAATACAACCTCGTTTGACATTCAA-----ACTTTAAATCTCAATTTGCATTT-------TATAAA----AAAA-TG---A----A--G-A-AAATT-G-GAAA-AAAC-A-AAAACAAACAATAAACTGTTTTGTAGTAT-CATAATATGTTTATATACATCAGGTAAAGT-TAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCA-AAATGC------GTATAT---TAATCCTAAGTTGTGTTAATAAAACGCCATTTGGCATT----C----ACTTTAATTTGCATATGAA-AATA--------A---AAAAAAAATGGAAACAAATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGT---ATTGTGTATCGGCCTATCTATACGGTGGTAC---G---TATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAA
gi|10 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgATTTTCATTT-------AA-AAAT---AAAA-GG---ACCAAA--G-G-AAATT-G-GCAATAAAT-A-AAAACAAACAGTAAACTGTTCTGCGTTAATGACAAAATATatgtgctcattac
gi|5 : gatttttatttagctctactggcTATTTATA-A-ATCAGGTAGAGTATA-TATCGGTTCT------TTAG--CTCTGACTTTGCATTTCATATTTTCA-ATATGTGTAAACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAAACTTTAATTTCAATTTGTATTTAAA-AATA--------ATAGAATGAAA--GGAAA-ATAGAAAAAAATA-AAAACAAACAATAAGCTGTCCTGCAgacatgtgccagcagtcatgttttaaattggcaat
gi|8 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttcTATTTATATATA--AGGTAGAGC-TAGTATCGGTTCTAGATGTTTAgaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|10 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatccgtagtcATTTTCATTTAAAAATAAA-AGGACC------A---AAGGAAATTGGCAATAAATAAAAACA---------AACAGTAAACTGTTCTGCGTTAATGACAAAATATGAttgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|12 : gatttttatttagctctactggcGCGTATTGTATCGTCAGGGTCCATATCGGC--A---ATACCGCG--AT---T---CATTGTAcatgtgccagcagtcatgttttaaattggcaat
gi|9 : actgttctgatataccggtttattgcagtttgtttctgagtaatatGTATTATACTGT---TTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATcataattcactttcctt
gi|11 : ACACATATCGCAGTAC---A---TATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAaaactttaatatcacatggtaaaacagttgcgtattaatgcaggcttgaacaaatttatattacacttgagcacaatattctgagaacatttctgttg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 5555555555 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 2 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111 22222 1 11111111 3333 6666 2222 11 333333333333 111111 111 1111 111 666666666666666 11111 111111 111 111111
lowQualScore : 0000000000 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 333 1 1 44 0 0 3 0 1 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9999999999999999999 1 1 0 1 0 1 1 1 00000 1 2 33333333 5555 1 2 6 0000 777 2 9 1 2 1111 77 888 22 1 5 44 999 000000000000 666666 66 9 555 77 888 7777 66 66 5 5 5 777 2 1 4 5 5 5 3 000 222222222222222 1 666 77 88888 1 666666 8 3 1 1 5 3 0 1 5 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : .......... ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . ... . . .. . . . . . . ......................................................................................................................................... ................... . . . . . . . . ..... . . ........ .... . . . .... ... . . . . .... .. ... .. . . .. ... ............ ...... .. . ... .. ... .... .. .. . . . ... . . . . . . . ... ............... . ... .. ..... . ...... . . . . . . . . . . . ... . . .. . . . ...... . . .
lowQualScore : 0000000000 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 000 0 0 77 7 7 7 7 0 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333333 0 0 7 0 7 0 0 0 00000 0 3 77777777 7777 0 5 7 3333 777 5 3 0 2 1111 99 333 66 6 0 77 666 999999999999 444444 99 8 666 00 888 5555 99 99 0 0 0 111 7 4 0 1 7 0 7 222 555555555555555 0 222 22 55555 0 555555 8 2 0 0 6 8 8 4 4 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCANGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTG-T----TTC------TCC-CCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTC-TCGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGGATATTTCAGTG---TTTTTTTTCAGCCCTGCANGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTTAATAATTATGTGT--ATAC--GAATACTACATTTGAGTAAATANAACCCCGTTTG--ACATTCAA-----AC-----TTT------CAAT--TTGCATTTAAAAATAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCAATATGCA-ACA-GTAT-A-G-AATNCTAAATTGCGTTAATAAAACTCCGTTTGGCATTCAAACT-TAATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCANNNANCTGCAGGGCTCACNCTGTCGNTCGCCAAAGGCGCCGATTTGACGATAAAANAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGATCAAATTCATCAAATCC-CCNGGNTGTTGGCCTTNTAAATTGGTTGCATTAAANGTCNGCACCTNTTTTTCGTCGAAGTGCGGCTCCGTTTATGTTNCTTGCAATAACAGGGNTGTTTCAGTGTGTTTTTTTTTCAGCCNTGCAGGTAGAGC-TAGTATCGTTC-GTTCTAGAGNTCTGACTTTCGCATTTCAAATNTTCAATAATTATGTGT--ATAC--GAATACTACATTTGNGTAAATAAAACCCCGTTTG--ACATTCAA-----AC-----TTT------CAAT--TTGCATTTAAAAATAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACATAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCAATATGCACGCATGTAT-A-G-AATNCTAAATTGTGTTAATAAAACTCCGTTTGGCATTNAAACTTTAATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTAACGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGATCAAATTC----------CCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT--TCGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGG-ATATTTTAGT------TTTTTTCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTAC--AAATACTGCATTC---------AAAC-------------TTTAA-----A------TTT------CAAT--TTGCATTTAAAAA--A---AA-CG---A----A--GAA--A-A-TTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTATGCACATATG--------AATTCTAAATTGTATAAATAGTACTTCAGTTGGCATTTAAACTTTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAAATAAATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaAT--TTTCATTTAAAAATAA---AA-GG---ACCAAA--GGA--A-A-TTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAAactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAtgacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacattcccatataccatGGCTGTTCCGGTA--TACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTA-------TACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTG---------------TCTGCCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAG---TTTTTTTTCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTAC--AAATACTACAGTTAAGTAAATACAACTCCGTTTT--ACATTTAA-----AC-----TTT------CAAT--TTGCATTTAAAAA-AA---AA-TG---A----A--GAA--A-A-TTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATATACATACATGTATAA-G-AATCCTAAATTGCGTTAATGAAACTCCATTTGGCATTAAAACTTTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTG-T----TTCATCAAATCC-CCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTCGT---AGTGCGGCTCCATTTATGTTTCTTGCAATAAC-GGGATGTTTCAGTGTGTTTTTTTTTCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATAT--AAATACTACATTTAAGTAAATATAACCCCGTTTA--ACATTCAA-----A------TTT------CAAT--TTGCATTTAAAAAAAA---AC-TG---A----A--GAA--A-AATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATA---AGGCA--TAA-A-G-TATGCTAAATTAT--------AAC---------CAATCAAAC--TAATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-AACAAAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGC--CAATACTACTTTTAAGTAAATACAACCTCGTTTG--ACATTCAA-----AC-----TTTAAATCTCAAT--TTGCATTTTATAAAAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAATGC------GTAT-A-TTAATCCTAAGTTGTGTTAATAAAACGCCATTTGGCATTCA--------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAAACAAATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT--------T-CCAATATTCTG--CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacattttCAGGTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAAC--GGACACTTAATTTGTGTAAATAAAATCTTGTTTG--ACATTCAA-----ACTTTAATTT------CAAT--TTGTATTTAAAAATAATAGAA-TG---A----AAGGAA--A-A-TAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATATGCA------TAT-AGG-AATACTATATTGCGATAATAAAACTCTGTTTGGCATTCAAACTATAATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatAA--TGGAAACAAACAATAAACTggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatcaggtagagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTA
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGA-TTTCGCATTTCAAATTTTCAGTA----TGTAT--ATAT--GAATACTAAATTTGCGTTAATAAAACCCTGTTTG--ACATTCAATCTTTAC-----TTT------TAGT--TAGTATTTAAAAATAA---AAGTACAAA----A--GGA--A-A-TTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----CTT---TTT----TTTTTATATGC------GTAT-ACA-AATACTTGATT---TTAAC----------------TTTAA-------TTTTAATTTGCATATAAAATTAAAA------TG--ACCAAAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT--------T--CGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTAaaggtagagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|8 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcAGGTAGAGC-TAGTATCG----GTTCTAGA----TG--TTT---AT------TGTTTAATA-------CT--ACACTTGAATACTACACTTG--------------CGTTTAACACATTC---------------TG------CAGGGATTACATTTATATATAATC-AA--G---ATC--A--GAATTACA-TTTAAAA-AAA---ACAAACAAACAGGAAAttgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatccgtagtctatttatatataGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 1 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7777777777 333 2 111 1 1 1111 1 2222 11 333333333333 111111 111 1111 111 5555555 222 111111 11111 1111111 111 111111
lowQualScore : 0000000000 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 1 3 3 0 0 3 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8888888888 1 3 222 8 3 0 2 777 0 0 8 1 6 4444 777 3 0 1111 77 888 22 1 3 44 999 000000000000 666666 66 9 555 77 888 7777 66 66 5 5 5 777 2 1 55 5 5 5 3 000 8888888 333 1 333333 77 88888 1 8888888 8 3 1 1 5 3 0 1 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : .......... ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . . . . . . . . . ......................................................................................................................................... .......... . . ... . . . . ... . . . . . .... ... . . .... .. ... .. . . .. ... ............ ...... .. . ... .. ... .... .. .. . . . ... . . .. . . . . ... ....... ... . ...... .. ..... . ....... . . . . . . . . . . ... . . .. . . . ...... . . .
lowQualScore : 0000000000 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 0 7 7 7 7 3 7 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333 0 7 777 7 2 2 5 555 0 0 8 0 7 2222 777 5 3 1111 99 333 66 6 0 77 666 999999999999 444444 99 8 666 00 888 5555 99 99 0 0 0 111 7 4 66 1 7 0 7 222 8888888 555 0 222222 22 77777 0 7777777 8 2 0 0 6 8 8 4 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA-----TCCCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGG-ATATTTCAGTGT---TTT-TTT-TCAGCCCTGCANGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTTAATAATTATGTGT--ATAC--GAATACTACATTTGAGTAAATANAACCCCGTTTG--ACATTCAA-----AC-----TTT------CAAT--TTGCATTTAAAAATAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCAATATGCA--CA-GTATA-G-AATNCTAAATTGCGTTAATAAAACTCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCANGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTC------TCCCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGGATATTTCAGTGT---TTT-TTT-TCAGCCCTGCANGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTTAATAATTATGTGT--ATAC--GAATACTACATTTGAGTAAATANAACCCCGTTTG--ACATTCAA-----AC-----TTT------CAAT--TTGCATTTAAAAATAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCAATATGCA-ACA-GTATA-G-AATNCTAAATTGCGTTAATAAAACTCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGAT-CAAA---TTCCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT-T-CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGG-ATATTTTAGT------TT-TTT-TCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTAC--AAATACTGCATTC---------AAAC-------------TTTAA-----A------TTT------CAAT--TTGCATTTAAAAA--A---AA-CG---A----A--GAA--A-A-TTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTATGCA--CA--TAT--G-AATTCTAAATTGTATAAATAGTACTTCAGTTGGCATTTAAACT-TTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAAATAAATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaAT--TTTCATTTAAAAATAA---AA-GG---ACCAAA--GGA--A-A-TTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAATGactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacattcccatataccatGGCTGTTCCGGTA--TACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTA-------TACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTCTG---------CCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAGT---TTT-TTT-TCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTAC--AAATACTACAGTTAAGTAAATACAACTCCGTTTT--ACATTTAA-----AC-----TTT------CAAT--TTGCATTTAAAAA-AA---AA-TG---A----A--GAA--A-A-TTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATATACATACATGTATAAG-AATCCTAAATTGCGTTAATGAAACTCCATTTGGCATTAAAACT-TTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAAACAAATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTGTTTCATCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTC---GTAGTGCGGCTCCATTTATGTTTCTTGCAATAACGGG-ATGTTTCAGTGTGTTTTT-TTT-TCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATAT--AAATACTACATTTAAGTAAATATAACCCCGTTTA--ACATTCAA-----A------TTT------CAAT--TTGCATTTAAAAAAAA---AC-TG---A----A--GAA--A-AATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATAAG---GCA--TAAA-G-TATGCTAAATT------AT--AAC---------CAATCAAAC--T-AATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-AACAAAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGC--CAATACTACTTTTAAGTAAATACAACCTCGTTTG--ACATTCAA-----AC-----TTTAAATCTCAAT--TTGCATTTTATAAAAA---AA-TG---A----A--GAA--A-A-TTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAATGC------GTATA-TTAATCCTAAGTTGTGTTAATAAAACGCCATTTGGCATTCA---------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAAACAAATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT--------T-CCAATATTCTG--CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacattttTATTTCCATGT---TCTATTTATAAATC----AGGTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAAC--GGACACTTAATTTGTGTAAATAAAATCTTGTTTG--ACATTCAA-----ACTTTAATTT------CAAT--TTGTATTTAAAAATAATAGAA-TG---A----AAGGAA--A-A-TAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATATGCA------TATAGG-AATACTATATTGCGATAATAAAACTCTGTTTGGCATTCAAACTAT-AATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagcttAA--TGGAAACAAACAATAAACTggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatcaggtagagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTA
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGATTTC-GCATTTCAAATTTTCAGTA----TGTAT--ATAT--GAATACTAAATTTGCGTTAATAAAACCCTGTTTG--ACATTCAATCTTTAC-----TTT------TAGT--TAGTATTTAAAAATAA---AAGTACAAA----A--GGA--A-A-TTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----CTT---TTT----TTTTTATATGC------GTATACA-AATACTTGATT---TT-----AACT-----------------T-T-AATTTTAATTTGCATATAAAATTAAAA------TG--ACCAAAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT--------T--CGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATAAGGTAaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTAgagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|8 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcAGGTAGAGC-TAGTATCG----GTTCTAGA----TG---------TTT--ATTGTTTAATA-------CT--ACACTTGAATACTACACTTG--------------CGTTTAACACATTC---------------TG------CAGGGATTACATTTATATATAATC-AA--G---ATC--A--GAATTACA-TTTAAAA-AAA---ACAAACAAACAGGAAAttgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatccgtagtctatttatatataGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 1 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666666666 333 1 111 1 1 1111 1 11 333333333333 111111 1 111 11111111 1111 44444444444444 111111 333333333333333333333333 111 111 111111
lowQualScore : 0000000000 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 1 3 3 0 0 3 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777777 1 3 222 0 3 0 2 777 0 0 8 1 8 7777 1 3 2 11 999 2 99 1 1 1 111111111111 999999 2 000 5 33333333 77 5 5 66 2 1 55 5 5 5 0 77 5555 5 77777777777777 1 5 000000 3 444444444444444444444444 1 7 66 3 99 111 1 1 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : .......... ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . . . . . . . . . ......................................................................................................................................... ............ . . ... . . . . ... . . . . . .... . . . .. ... . .. . . . ............ ...... . ... . ........ .. . . .. . . .. . . . . .. .... . .............. . . ...... . ........................ . . .. . .. ... . . . . ... . . .. . . . ...... . . .
lowQualScore : 0000000000 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 0 7 7 7 7 3 7 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333333 0 7 777 0 2 2 5 555 0 0 8 0 0 0000 0 2 2 22 555 2 77 0 0 0 000000000000 222222 4 000 7 11111111 99 7 7 99 7 4 66 1 7 0 7 00 1111 7 44444444444444 0 7 111111 6 000000000000000000000000 0 5 22 2 22 777 7 8 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----AC-----TTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--GAAAA-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-TCAGCCCTGCANGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTTAATAATTATGTGT--ATACGAATACTACATTTGAGTAAATANAACCCCGTTTGACATTCAA-----AC-----TTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--GAAAA-TTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCGCATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGAT-CAAATT-----CCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT-T-CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGGA-TATTTTAGT------TT-TTT-TCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTACAAATACTGCATTC---------AAAC-----------TTTAA-----A------TTT------CAATTTGCATTTAAAAA--A---AA-CG---A----A--GAAAA-TTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTA-TGCACA----TAT--G-AATTCTA-AATTGTATAAATAGTAC--TTCAGTTGGCATTTAAACT-TTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAA--ATA---AATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaATTTTCATTTAAAAATAA---AA-GG---ACCAAA--GGAAA-TTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAATGactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacattcccatataccatGGCTGTTCCGGTA--TACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTA-------TACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTCTG-----------CCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAGT---TTT-TTT-TCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTACAAATACTACAGTTAAGTAAATACAACTCCGTTTTACATTTAA-----AC-----TTT------CAATTTGCATTTAAAAA-AA---AA-TG---A----A--GAAAA-TTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATA-TACATACATGTATAAG-AATCCTA-AATTGCGTTAATGAAAC--TCCATTTGGCATTAAAACT-TTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTGTTTCA--TCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTC---GTAGTGCGGCTCCATTTATGTTTCTTGCAATAACGGGA-TGTTTCAGTGTGTTTTT-TTT-TCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATATAAATACTACATTTAAGTAAATATAACCCCGTTTAACATTCAA-----A------TTT------CAATTTGCATTTAAAAAAAA---AC-TG---A----A--GAAAAATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATA-AG-GCA----TAAA-G-TATGCTA-AATT------AT--AAC-----------CAATCAAAC--T-AATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-A--ACA---AAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGCCAATACTACTTTTAAGTAAATACAACCTCGTTTGACATTCAA-----AC-----TTTAAATCTCAATTTGCATTTTATAAAAA---AA-TG---A----A--GAAAA-TTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAA-TGC------GTATA-TTAATCCTA-AGTTGTGTTAATAAAAC--GCCATTTGGCATTCA---------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAA--ACA---AATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT--------T-CCAATATTCTG--CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttt-TATTTCCATGT---TCTATTTATAAATC----AGGTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAA-----ACTTTAATTT------CAATTTGTATTTAAAAATAATAGAA-TG---A----AAGGAAAA-TAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATA-TGCA------TATAGG-AATACTA-TATTGCGATAATAAAAC--TCTGTTTGGCATTCAAACTAT-AATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagcttAA--TGGAAACAAACAATAAACTggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagctttatttccatgttctatttataaatcaggtagagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTA
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGATTTC-GCATTTCAAATTTTCAGTA----TGTAT--ATATGAATACTAAATTTGCGTTAATAAAACCCTGTTTGACATTCAATCTTTAC-----TTT------TAGTTAGTATTTAAAAATAA---AAGTACAAA----A--GGAAA-TTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----CTT---TTT----TTTTTATA-TGC------GTATACA-AATACTT-GATT---TT-----AAC--T-----------------T-T-AATTTTAATTTGCATATAAAATTAAAA------TG--A--CCA---AAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT--------T--CGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATAAGGTAaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTA-----------TTG---TTTAATACTACAC-------TT-G-AATACTACACTTGCGTT--TAACACATTCTG-CAGGGATT---AC-----------ATTTATATAT--AATCA-----AGATCAGAATTACATTTAAAAAAAAC-----AAACAAACAGGAAAgagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 1 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666666666 333 1 111 1 22222 1111 1 11 11111 333333 1 111 11111111 22 44444444444444 111111 333333333333333333333333 111 111 111111
lowQualScore : 0000000000 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 1 3 3 0 0 3 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777777 1 3 222 0 3 0 2 777 0 55555 777 0 8 7777 1 3 1 11 999 2 3 1 66666 6 555555 2 000 5 33333333 77 5 5 77 2 1 55 5 5 5 0 44 1 88 5 77777777777777 1 5 000000 3 444444444444444444444444 1 7 66 3 99 111 1 1 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : .......... ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . . . . . . . . . ......................................................................................................................................... ............ . . ... . . . . ... . ..... ... . . .... . . . .. ... . . . ..... . ...... . ... . ........ .. . . .. . . .. . . . . .. . .. . .............. . . ...... . ........................ . . .. . .. ... . . . . ... . . .. . . . ...... . . .
lowQualScore : 0000000000 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 0 7 7 7 7 3 7 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333333 0 7 777 0 2 2 5 555 0 00000 555 6 0 0000 0 2 4 22 555 2 3 0 77777 7 888888 4 000 7 11111111 99 7 7 99 7 4 66 1 7 0 7 77 7 00 7 44444444444444 0 7 111111 6 000000000000000000000000 0 5 22 2 22 777 7 8 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGAT-CAAATT-----CCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT-T-CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGGA-TATTTTAGT------TT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTACAAATACTGCATTCAA-------------------AC-TTTAA-----A-TTT------CAATTTGCATTTAAAAA--A---AA-CG---A----A--G-AAAATTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTA-TGCACA----TAT--G-AATTCTA-AATTGTATAAATAGTAC--TTCAGTTGGCATTTAAACT-TTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAA--ATA---AATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaATTTTCATTTAAAAATAA---AA-GG---ACCAAA--G-GAAATTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAATGactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacattcccatataccatGGCTGTTCCGGTA--TACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTA-------TACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTCTG-----------CCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAGT---TTT-TTT-----TCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTACAAATACTACAGTTAAGTAAATACAACTCCGTTTTACATTTAA-----ACTTT------CAATTTGCATTTAAAAA-AA---AA-TG---A----A--G-AAAATTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATA-TACATACATGTATAAG-AATCCTA-AATTGCGTTAATGAAAC--TCCATTTGGCATTAAAACT-TTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTGTTTCA--TCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTC---GTAGTGCGGCTCCATTTATGTTTCTTGCAATAACGGGA-TGTTTCAGTGTGTTTTT-TTT-----TCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATATAAATACTACATTTAAGTAAATATAACCCCGTTTAACATTCAA-----A-TTT------CAATTTGCATTTAAAAAAAA---AC-TG---A----A--GAAAAATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATA-AG-GCA----TAAA-G-TATGCTA-AATT------AT--AAC-----------CAATCAAAC--T-AATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-A--ACA---AAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGCCAATACTACTTTTAAGTAAATACAACCTCGTTTGACATTCAA-----ACTTTAAATCTCAATTTGCATTTTATAAAAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAA-TGC------GTATA-TTAATCCTA-AGTTGTGTTAATAAAAC--GCCATTTGGCATTCA---------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAA--ACA---AATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT--------T-CCAATATTCTG--CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttt-TATTTCCATGT---TCTATTTATAAATCAG--------GTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAA-----ACTTTAATTT-CAATTTGTATTTAAAAATAATAGAA-TG---A----AAGG-AAAATAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATA-TGCA------TATAGG-AATACTA-TATTGCGATAATAAAAC--TCTGTTTGGCATTCAAACTAT-AATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagcttGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTAggaaacaaacaataaact
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGATTTC-GCATTTCAAATTTTCAGTA----TGTAT--ATATGAATACTAAATTTGCGTTAATAAAACCCTGTTTGACATTCAATCTTTACTTT------TAGTTAGTATTTAAAAATAA---AAGTACAAA----A--G-GAAATTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----------CTTTT-TTTTTTATA-TGC------GTATACA-AATACTT-GATT---TT-----AAC--T-----------------T-T-AATTTTAATTTGCATATAAAATTAAAA------TG--A--CCA---AAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT--------T--CGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATAAGGTAaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTA-----------TTG---TTTAATACTACAC-------TT-G-AATACTACACTTGCGTT--TAACACATTCTG-CAGGGATT---AC-----------ATTTATATAT--AATCA-----AGATCAGAATTACATTTAAAAAAAAC-----AAACAAACAGGAAAgagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 1 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666666666 333 1 111 1 22222 1111 1 11 11111 333333 1 111 11111111 22 44444444444444 111111 333333333333333333333333 111 111 111111
lowQualScore : 0000000000 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 1 3 3 0 0 3 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777777 1 3 222 0 3 0 2 777 0 55555 777 0 8 7777 1 3 1 11 999 2 3 1 66666 6 555555 2 000 5 33333333 77 5 5 77 2 1 55 5 5 5 0 44 1 88 5 77777777777777 1 5 000000 3 444444444444444444444444 1 7 66 3 99 111 1 1 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : .......... ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . . . . . . . . . ......................................................................................................................................... ............ . . ... . . . . ... . ..... ... . . .... . . . .. ... . . . ..... . ...... . ... . ........ .. . . .. . . .. . . . . .. . .. . .............. . . ...... . ........................ . . .. . .. ... . . . . ... . . .. . . . ...... . . .
lowQualScore : 0000000000 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 0 7 7 7 7 3 7 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333333 0 7 777 0 2 2 5 555 0 00000 555 6 0 0000 0 2 4 22 555 2 3 0 77777 7 888888 4 000 7 11111111 99 7 7 99 7 4 66 1 7 0 7 77 7 00 7 44444444444444 0 7 111111 6 000000000000000000000000 0 5 22 2 22 777 7 8 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTTCAGGTATATACAGGTATACCAGTTTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGAT-CAAATT-----CCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT-T-CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGGA-TATTTTAGT------TT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTACAAATACTGCATTCAA-------------------AC-TTTAA-----A-TTT------CAATTTGCATTTAAAAA--A---AA-CG---A----A--G-AAAATTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTA-TGCACA----TAT--G-AATTCTA-AATTGTATAAATAGTAC--TTCAGTTGGCATTTAAACT-TTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAA--ATA---AATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaATTTTCATTTAAAAATAA---AA-GG---ACCAAA--G-GAAATTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAATGactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT----------CTGATATACCGGTTTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGTTTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaGTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacattcccatataccatGGCTGTTCCGGTA--TACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTA-------TACCGGTATACCGATTTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTCTG-----------CCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAGT---TTT-TTT-----TCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTACAAATACTACAGTTAAGTAAATACAACTCCGTTTTACATTTAA-----ACTTT------CAATTTGCATTTAAAAA-AA---AA-TG---A----A--G-AAAATTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATA-TACATACATGTATAAG-AATCCTA-AATTGCGTTAATGAAAC--TCCATTTGGCATTAAAACT-TTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTGTTTCA--TCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTC---GTAGTGCGGCTCCATTTATGTTTCTTGCAATAACGGGA-TGTTTCAGTGTGTTTTT-TTT-----TCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATATAAATACTACATTTAAGTAAATATAACCCCGTTTAACATTCAA-----A-TTT------CAATTTGCATTTAAAAAAAA---AC-TG---A----A--GAAAAATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATA-AG-GCA----TAAA-G-TATGCTA-AATT------AT--AAC-----------CAATCAAAC--T-AATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-A--ACA---AAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT----------CCGATATACCGGTTTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGCCAATACTACTTTTAAGTAAATACAACCTCGTTTGACATTCAA-----ACTTTAAATCTCAATTTGCATTTTATAAAAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAA-TGC------GTATA-TTAATCCTA-AGTTGTGTTAATAAAAC--GCCATTTGGCATTCA---------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAA--ACA---AATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT--------T-CCAATATTCTG--CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttt-TATTTCCATGT---TCTATTTATAAATCAG--------GTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAA-----ACTTTAATTT-CAATTTGTATTTAAAAATAATAGAA-TG---A----AAGG-AAAATAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATA-TGCA------TATAGG-AATACTA-TATTGCGATAATAAAAC--TCTGTTTGGCATTCAAACTAT-AATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagcttGGCTGTT--------TA--GGTATACCGGTTTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTAggaaacaaacaataaact
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGATTTC-GCATTTCAAATTTTCAGTA----TGTAT--ATATGAATACTAAATTTGCGTTAATAAAACCCTGTTTGACATTCAATCTTTACTTT------TAGTTAGTATTTAAAAATAA---AAGTACAAA----A--G-GAAATTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----------CTTTT-TTTTTTATA-TGC------GTATACA-AATACTT-GATT---TT-----AAC--T-----------------T-T-AATTTTAATTTGCATATAAAATTAAAA------TG--A--CCA---AAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT--------T--CGTTATACTGGTATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATAAGGTAaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTA-----------TTG---TTTAATACTACAC-------TT-G-AATACTACACTTGCGTT--TAACACATTCTG-CAGGGATT---AC-----------ATTTATATAT--AATCA-----AGATCAGAATTACATTTAAAAAAAAC-----AAACAAACAGGAAAgagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
blockSeqs : CCGGTATA AATATTG TA A G C G C AATTCAA TTTAAA AGGCC TTCCCTTTGAAATAAAGCCGATAAAACAGCATCAGTTCCATTCA G . T . . . AA A T G T . . TCATCAAATC G A TTT A T G GTT A ATAAA CAC A TTCT G C A AT GTA A C T TCTTT C AAATCT T TAG G ACCAA AG A T AT G A TG C A T GC C TA C ATACATGTATAAG C C GCGTTA G TCCATTTGGCATTAAAACTTT G A GG A TT TTT A A T A GAT G AC G C A GTACAT T A T
blockSeqs : ATA . . . T T G C . . . TATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATCTATTCA G . . . . . AG . G T A . TG T G C . T G . . . CCG . . T C T AT G A T A . C AATTT A . . CAAA . . . . T A AA A . T TT C CA . GCATAAAG G . GTGTTA A TCTGTTTGGCATTCAAACTAT G C GG A . . A A C T . T AT G T T . G A T
blockSeqs : TA . . . G T G C . . . CAAAAAACACAGTATCATTTCA T . . . . . A . G . . G . . . . . . C . C . G C C G . C . A . . A . . . . A A CT T . T CC C CA . GTATATT C . GCGATA A ATTCTGCAGGGATTAC G A AA A . . G A A T . . AC A T G . T G G
blockSeqs : T . . . G T G T . . . CATTAAATCTATTCA G . . . . . A . T . . C . C . A G A G . C . T . . A . . . . A A CA A . T CT T T . ATATAGG A . GCGTT A GCCATTTGGCATTCA A T . . . . A G C A . . . G . G A T
blockSeqs : T . . . T C A A . . . CATAAAAGCCATTCA T . . . . . . . G A G A G . . . T . . A . . . . A A CA A . T . T . . GTATACA A . TT . CAATCAAACT . T . . . . . . A . T T G
blockSeqs : . . . . G T . C . . . . . . A . . . . G C TT . . . . . . . ACTTG A . . . TTT
blockSeqs : . . . . G . . G CG
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : T********* ******* ***** ** CG
originalCons : TAGGGCTGTT--------TACCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
finalCons : TAGGGCTGTTT---------CCGGTATACCGGTTTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----ACTTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333 11111111 1111111 1111111 111111 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222 11111 22 1 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666666666 333 1 111 1 22222 1111 1 11 333333333333 111111 1 111 11111111 22 44444444444444 111111 333333333333333333333333 111 111 111111
lowQualScore : 55555555555 5 44444444 3333333 55 4 1 0 1 1 1 0 0 8888888 666666 44444 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1111111 6 6 66666 99 00 6 1 3 3 0 0 3 0 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777777777777 1 3 222 0 3 0 2 777 0 55555 777 0 8 7777 1 3 1 11 999 2 3 1 111111111111 999999 2 000 5 33333333 77 5 5 77 2 1 55 5 5 5 0 44 1 88 5 77777777777777 1 5 000000 3 444444444444444444444444 1 7 66 3 99 111 1 1 1 1 444 0 3 33 6 1 2 999999 1 1 1
lowQualScore : ........... . ........ ....... .. . . . . . . . . ....... ...... ..... ............................................................................................. . ....... . . ..... .. .. . . . . . . . . . ......................................................................................................................................... ............ . . ... . . . . ... . ..... ... . . .... . . . .. ... . . . ............ ...... . ... . ........ .. . . .. . . .. . . . . .. . .. . .............. . . ...... . ........................ . . .. . .. ... . . . . ... . . .. . . . ...... . . .
lowQualScore : 77777777777 7 55555555 0000000 55 4 1 9 1 4 4 4 4 6666666 444444 33333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 7777777 7 7 77777 22 33 7 0 7 7 7 7 3 7 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333333 0 7 777 0 2 2 5 555 0 00000 555 6 0 0000 0 2 4 22 555 2 3 0 000000000000 222222 4 000 7 11111111 99 7 7 99 7 4 66 1 7 0 7 77 7 00 7 44444444444444 0 7 111111 6 000000000000000000000000 0 5 22 2 22 777 7 8 4 4 000 8 0 55 4 4 2 222222 5 0 0
consensus : TAGGGCTGTT-T---------CCGGTATACCGGT--------TTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----AC-----TTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
Reference ( family-2558 ) : TAGGGCTGTT-T---------CCGGTATACCGGT--------TTATTGCGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TATC-GGCAGGGTCCGTATCGGCCATACCGCGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------NC----T-A------------T----TC-----A------------AATGA-------TCAAA-T-ATCGA-----GAG--ATCGAACAAATAGCCTTACT-TCCGTATTCTATTTATAAATCAGGTATCTGCAGGGCTCACGCTGTCGGTCGCCAAAGGCGCCGATTTG-CGATAAAAAAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTTTCA--TC-----CCCAGGATGTTGACCTTATAAATTAGTTGCATTAAANGTCGGCACCTTTTTTTCT-CGAAGTGCGGCTCCGTTTATGTTTCTTGCAATAACGGGA-TATTTCAGTGT---TTT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCG----GTTCTAGAGNTCTGACTTCCGCATTTCAAATGTTCAATAATTATGTGT--ATACGAATACTACATTTAAGTAAATANAACCCCGTTTGACATTCAA-----AC-----TTT------CAATTTGCATTTAAAAATAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--TAAAAACAAACAATAAACTGTTCTGCGGTAACGTAATCTATTTATAAACATCAGGTAGAGCTAGTATCGGTTCTAG-TCTTTAGAGCTCCGACTTCG-ATTTCAATA-TGCACA---GTATA-G-AATNCTA-AATTGCGTTAATAAAAC--TCCGTTTGGCATTCAAACT-T-AATTTTAATTTGCATATGAAANTAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCGTTACCGACAAAATACGAAACTATTTGTCACTCGAT---ACTTGTGTATTTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTGCGTATCGGCCTACCCGTATCGCGGTACGT------ATTGTATTGNAAGTGNCCTGGCAATACACAGCCCTAAT
gi|1 : TAGGGCTGTT-CAGGTATATACAGGTATACCAGT--------TTATTGCAGTTCATTTCTGAAGAATATGCGTAT-------TG--TATC-AGCAGGGTCCCTATCGGCCATACAGCGATACAGTCGTAGGT-------TACGC------ATGA-----TTCAATTTC---------C----TTAAA------------------------AA----TAA------------T----GC-----AAAAAAAAAAGAGAATAAAATCTATTCAAA-TGATCGAAAAAGGAGACATTGAACAAATAACCTGACT-TCCGTATTCTATTTATAAATCAATTATCTGCAGGGCTCACACTGTCGGTTGCCAAAGGCGCCAATTTGATGATAAAAAAATTAAA
gi|1 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcatACCATTTCCTCCTTTGAT-CAAATT-----CCCTGGATGTTGACCTTATAAATTAGTTGCATTAAAAGTCTGCATCTTTTTTT-T-CGAAGTGCGGCTCCGTTTATGTTGTTTGCAATAACAGGA-TATTTTAGT------TT-TTT-----TCAGCCCTGCATGTAGAGC-TAGTATCA----GTTCTAGAGGCCTGACTTCTGCATTTCAAATGTTTAATAATTATTTGT--TTACAAATACTGCATTCAA-------------------AC-TTTAA-----A------TTT------CAATTTGCATTTAAAAA--A---AA-CG---A----A--G-AAAATTGGAAA-AAA--ATAAAACAAA---TAAACTGTTTTGCAGT--------CTATTTATAAACATCAGGTAGAGCTACTATTGGTTCTAG-TCTT-AGAGCTCCGACTTCGGATTTCAGTA-TGCACA----TAT--G-AATTCTA-AATTGTATAAATAGTAC--TTCAGTTGGCATTTAAACT-TTAATTTAAGTTTGCATATGAAA-TAAAAGGTAATTGGAA--ATA---AATAAAAGTATATTAAACAAACAATAAACTGTTCCATGTTACTGACAAAATATGAAATTATTTGTCACTTGAT---ACTTATGTATTTCAAATCAATGAGA----------AAATGTAAGATTGTTTTCTAATGTTAAGCAGCGTATCATATCGTATTGCGTGTCGGTCTACCTGTATCGTGGTACAT------ATTGTATCGTAAGTTACCTAGCAATACACAGCCCTAGTtatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaaccatttcctcctttgatcaaattccctggatgttgaccttataaattagttgcattaaaagtctgcatcttttttttcgaagtgcggctccgtttatgttgtttgcaataacaggatattttagtttttttcagccctgcatgtagagctagtatcagttctagaggcctgacttctgcatttcaaatgtttaataattatttgtttacaaatactgcattcaaactttaaatttcaatttgcatttaaaaaaaacgaagaaaattggaaaaaaataaaacaaataaactgttttgcagtctatttataaacatcaggtagagctactattggttctagtcttagagctccgacttcggatttcagtatgcacatatgaattctaaattgtataaatagtacttcagttggcatttaaactttaatttaagtttgcatatgaaataaaaggtaattggaaataaataaaagtatattaaacaaacaataaactgttccatgttactgacaaaatatgaaattatttgtcacttgatacttatgtatttcaaatcaatgagaaaatgtaagattgttttctaatgttaagcagcgtatcatatcgtattgcgtgtcggtctacctgtatcgtggtacatattgtatcgtaagttacctagcaatacacagccctagtactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|10 : ttgaaaacttcatatgacatgtctaaattatgaacttagatgatgtactcattagggctgttcaggtatatacaggtataccagtttattgcagttcatttctgaagaatatgcgtattgtatcagcagggtccctatcggccatacagcgatacagtcgtaggttacgcatgattcaatttccttaaaaataatgcaaaaaaaaaagagaataaaatctattcaaatgatcgaaaaaggagacattgaacaaataacctgacttccgtattctatttataaatcaattatctgcagggctcacactgtcggttgccaaaggcgccaatttgatgataaaaaaattaaatatatcgaggacatttcgtaagttaacagatttcggataagagattgtctcaatatcttacaagaaaacatcatcgaataaacgattaaacatacagttaaaatagttatttacgcatataaaATTTTCATTTAAAAATAA---AA-GG---ACCAAA--G-GAAATTGGCAATAAA--TAAAAACAAACAGTAAACTGTTCTGCGTTAATGactcataggttttcttaaagaataatcagtttaataacagacattaaataaattggtataaaacagacatgatatttcgtaaaatcatttatctt
gi|11 : gatttttatttagctctactggcTATTTGCAACTCAAT---GCTTGTGTAacaaaatatgacatgtgccagcagtcatgttttaaattggcaat
gi|11 : tgatagtcttgACACATATCGCAGTACAT------ATTGTATTGAAAGTGTCCTGGCAATACACAACCCTAcaagactatcagtaatcttaaaaaacaacacatatcatatcataacacatatcgcagtacatattgtattgaaagtgtcctggcaatacacaaccctag
gi|12 : tgatagtcttgtatttgcaactcaatgcttgtgtacaagactatcagtaatcttaaaaaacaacacatatcatatcataCTGTT-----------CTGATATACCGGT--------TTATTGCAGTTTGTTTCTGAGTAATATGCGTAT-------TG--TATC-GTCAGGGTCCATATCGGCAATACCGCGATTCA--------T-------TGTAC------ATAA-----TTCAg
gi|13 : aGTATACCAGT--------TTATTGTGATTCATTTCCTAGTAAAATGCGTAT-------TG--TATG-GGCATGGT---------CCATACCGTGATACAGCCATAAGT-------TGTGC------ATTA-----TTCAG---T---------A----Tctttcctt
gi|14 : tataaaaaT-T---------CCCATATACC-------------AT----GTTCGTTTCCAAGCAGTATGTGTTT-------TG--TATCAGGCA--GTCTGTATTAGCCGTACCACGATACAGTcttt
gi|15 : aaggctgaacaGGCTGTT-----------CCGGTATACCGGTATACAGGTTTATTGCGGTTCATTCCTGAACAATATGCGTAT-------TGTATATC-GGCAGGGTCCAT
gi|2 : TAGGGCTGTTATA--------CCGGTATACCGAT--------TTATTGTGGTTCATTTCTGAGCAATATGCGTAT-------TG--TATC-ATCAGGGTCTGTATTGGCCATACTGCGATACAGTAACAGGT-------TATGC------ATAA-----TTCAG---C---------A----TTAAA------------------------TC----T-A------------T----TC-----A------------AATGA-------TTAAA-T-ATTGA-----GAG--ATCAAACAAATAGCCACACT-TCCGTATTCTATTTATAAATCATAAATCTGCAGGACTCATGCTGTCTGTCGCCAAAGGCACCAATTTG-CAATAAAAAAAT-AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTCCTCCTTTGTCTG-----------CCAAGATGTTGACTGTATAAATCAGTTGCACTAAAGGTCAGCACCTTTTTTTTTTCAAAGTAAGGCTCTGTTTATGTTTCTTGCAACAGCGGAAATA----AAAGT---TTT-TTT-----TCAGCACTGCATGTAGAGC-TAGTATCATTCTGTTCTAGACGTCTGACTACCGCTTTTCAAATGTTAAATAATTATGTGT--GTACAAATACTACAGTTAAGTAAATACAACTCCGTTTTACATTTAA-----AC-----TTT------CAATTTGCATTTAAAAA-AA---AA-TG---A----A--G-AAAATTGAAAA-AAA--TAAAAACAAACAATAAACCGTTTTGCTGTAAAACAATATATTCATACACATCAGGTAGAGCTAGTATCGGTTCTAG-TTTTTAGAGCTGCGACTTCGTATTTCAATA-TACATACATGTATAAG-AATCCTA-AATTGCGTTAATGAAAC--TCCATTTGGCATTAAAACT-TTGATTTTAATTTGCATATGAAAATAAAAGGAAATTGGAA--ACA---AATAAAAACATATAAAACAAACAATAAACTGTTCCGCATTACCTACAAAATATGAAACTTTTTGTCACTTGAT---ACTTGTGTATGTCAAATCAATGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGCGTATTGTATCGTATTTTGTATCAGCCTACCCATACCGCGGTACTT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAT
gi|3 : ACTATTTCTTCCTTTGTTTCA--TCAAATCCCCAGGTTGTTGGCCTTCTAAATTGGTTGCATTAAATGTCGGTACCTATTTTTC---GTAGTGCGGCTCCATTTATGTTTCTTGCAATAACGGGA-TGTTTCAGTGTGTTTTT-TTT-----TCAGCCGTGCATGTAGAGC-TAGTATCG----GTTCTATAGTACTGACTTCCGCATTTCAAATGATTAATAATTATGTGTGTATATAAATACTACATTTAAGTAAATATAACCCCGTTTAACATTCAA-----A------TTT------CAATTTGCATTTAAAAAAAA---AC-TG---A----A--GAAAAATTGGAAA-AAA--TTAAAACAAACAATCAACTGTTTTGTAGTAACTTAATCTATTTATAAACATCAGGTAGAGCTAGTATTGATTTTAG-TCTCTAGAGCTTTGACTTCGCATTTCAATA-AG-GCA----TAAA-G-TATGCTA-AATT------AT--AAC-----------CAATCAAAC--T-AATTTTAATTTGCATATGAAACTAAAAGGAAATTTG-A--ACA---AAT--AAATATATAAAACAAACAATAAACTGTTCCGCATTACTGACAAAATACGAAACTTTTTGTCACTCGAT---A-TTG------TCAAATCAATGAGGATTACAAAGCAAAAGTAAAATTGTTTTCAAATGTTCAGCAGCATATT-----GTATTGCATATTGGCCTACCCGTATCACGGTACGT------ATCGTATTGGAAGTGGCCTGGCAATACACACCCATAAT
gi|4 : tatttaggtatataaAGGGCTGTT-----------CCGATATACCGGT--------TTATTGTGGTTCGTTTCTGAGCAATATGCGTAT-------TG--TAT
gi|4 : attaaagcaacataaatgtaTATGTGT--GTGCCAATACTACTTTTAAGTAAATACAACCTCGTTTGACATTCAA-----AC-----TTTAAATCTCAATTTGCATTTTATAAAAA---AA-TG---A----A--G-AAAATTGGAAA-AAA--CAAAAACAAACAATAAACTGTTTTGTAGTATCATAATATGTTTATATACATCAGGTAAAGTTAGTTTCTGTTCTAG-TCTCTAGAGCTCCGACTTCGCATTTCAAAA-TGC------GTATA-TTAATCCTA-AGTTGTGTTAATAAAAC--GCCATTTGGCATTCA---------CTTTAATTTGCATATGAAAATAAAAAAAAAATGGAA--ACA---AATAAAAACATATAAAACGAACTATAAACTGTTCCGCATTAACGACAAAATAAGAAACTATTTGTCACTCGATGATACTTGTGTATTTCAAATCATTGAGAACTACAAAGCAAAAGTAAGATTGTTTTCTAATGTTAAGCAGTGTATTGTATTGTATTGTGTATCGGCCTATCTATACGGTGGTACGT------ATTGTATGGAAAGTGTCCTGGCAATACACAGCCCTAAgtgtgtgccaatactacttttaagtaaatacaacctcgtttgacattcaaactttaaatctcaatttgcattttataaaaaaatgaagaaaattggaaaaaacaaaaacaaacaataaactgttttgtagtatcataatatgtttatatacatcaggtaaagttagtttctgttctagtctctagagctccgacttcgcatttcaaaatgcgtatattaatcctaagttgtgttaataaaacgccatttggcattcactttaatttgcatatgaaaataaaaaaaaaatggaaacaaataaaaacatataaaacgaactataaactgttccgcattaacgacaaaataagaaactatttgtcactcgatgatacttgtgtatttcaaatcattgagaactacaaagcaaaagtaagattgttttctaatgttaagcagtgtattgtattgtattgtgtatcggcctatctatacggtggtacgtattgtatggaaagtgtcctggcaatacacagccctaaatgtgctcattac
gi|5 : attaaagcaacataaatgtaagggctgttccgatataccggtttattgtggttcgtttctgagcaatatgcgtattgTAGGGCT-TT-T---------CCAATATTCTG----------CTATGCCGGTTTATT------------GCATAT-------TG--TATT-GGCATTGTCAGTATTG-CGATACAGTCAT--AGTTATACATAATTCAATATCCTTTAAAATAAAGGCCCTCAC---C---------A----A-AAA------------------------ACACAGT-A------------TCATTTC-----A------------AATGA-------TCAAA-T-ATCGA-----AAG--ATC----AAATAGCTTTATT-TCCATGTTCTATTTATAAATCAGGTAatgtgctcattac
gi|5 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttt-TATTTCCATGT---TCTATTTATAAATCAG--------GTAGAGTATA-TATCG----GTTCTTTAGCTCTGACTTT-GCATTTCATATTTTCAATA----TGTGT--AAACGGACACTTAATTTGTGTAAATAAAATCTTGTTTGACATTCAA-----ACTTTAATTT------CAATTTGTATTTAAAAATAATAGAA-TG---A----AAGG-AAAATAGAAAA-AAA--TAAAAACAAACAATAAGCTGTCCTGCAG-AACATAATCTATTAATAAACATCAGGTAGAGCTGGTATCGGTTC--------TAGAGCTCTGACTT----TTTTAATA-TGCA------TATAGG-AATACTA-TATTGCGATAATAAAAC--TCTGTTTGGCATTCAAACTAT-AATTTTAATgagtatatatcggttctttagctctgactttgcatttcatattttcaatatgtgtaaacggacacttaatttgtgtaaataaaatcttgtttgacattcaaactttaatttcaatttgtatttaaaaataatagaatgaaaggaaaatagaaaaaaataaaaacaaacaataagctgtcctgcagaacataatctattaataaacatcaggtagagctggtatcggttctagagctctgacttttttaatatgcatataggaatactatattgcgataataaaactctgtttggcattcaaactataattttaatggaaacaaacaataaact
gi|6 : tttttttaaatttataattttaagtttttaacaaaggatgttttcttcatatcaacatttttagggcttttccaatattctgctatgccggtttattgcatattgtattggcattgtcagtattgcgatacagtcatagttatacataattcaatatcctttaaaataaaggccctcaccaaaaaacacagtatcatttcaaatgatcaaatatcgaaagatcaaatagcttGGCTGTT-T---------A-GGTATACCGGT--------TTATTGCAGTTCATTTCTGAACAATATGCGCAT-------TG--TATC-GACAGGGTCTGTAACGGCCATACCGTGATACAGTCGTAGGT-------TATGC------ATAA-----TTCAG---TTCCCTTTGAA----ATAAA------------------------GCCGA-T-AAAACAGCATCAGT----TCCATTCA------------AATTA-------TCAAATT-ATC-A-----AAT--ATCA---AGATAGCCTTTCT-TTCATATTCTATTTATAAATCAGGTAggaaacaaacaataaact
gi|6 : CAGGTAGAGC-TAGTATTG----GTTCTAGAGCTCTGATTTC-GCATTTCAAATTTTCAGTA----TGTAT--ATATGAATACTAAATTTGCGTTAATAAAACCCTGTTTGACATTCAATCTTTAC-----TTT------TAGTTAGTATTTAAAAATAA---AAGTACAAA----A--G-GAAATTAGAAA-AAAATTAAACACAGACAATAAACAGTTCTGCGGTCATTTGATCTATTTATAAACATCCAGTAGAGCTAGTATCGATTCTAG-ACTT-----------CTTTT-TTTTTTATA-TGC------GTATACA-AATACTT-GATT---TT-----AAC--T-----------------T-T-AATTTTAATTTGCATATAAAATTAAAA------TG--A--CCA---AAGGAA---ATTGGAAACAAACAATAAACTGTTCTGGGTTAACAACAAAATACAAAACTgagctagtattggttctagagctctgatttcgcatttcaaattttcagtatgtatatatgaatactaaatttgcgttaataaaaccctgtttgacattcaatctttacttttagttagtatttaaaaataaaagtacaaaaggaaattagaaaaaaattaaacacagacaataaacagttctgcggtcatttgatctatttataaacatccagtagagctagtatcgattctagacttcttttttttttatatgcgtatacaaatacttgattttaactttaattttaatttgcatataaaattaaaatgaccaaaggaaattggaaacaaacaataaactgttctgggttaacaacaaaatacaaaact
gi|7 : ggctgtttaggtataccggtttattgcagttcatttctgaacaatatgcgcattgtatcgacagggtctgtaacggccataccgtgatacagtcgtaggttatgcataattcagttccctttgaaataaagccgataaaacagcatcagttccattcaaattatcaaattatcaaatatcaagatagcctttctttcatattctatttataaatAGGGCTGTT-T---------C-GTTATACTGGT--------ATATTGCGGTTTGTTTCTGAGCAATATGTGTATAATATTGTA--TATC-GACAGGGTCCGTATTGACTATACGGCAATACAGTCGTAGGT-------TATGC------ATAA-----TTCAA---T---------ATCCTTTAAAATAAAGCCAAAAAACAGCATCAAATC----T-A------------T----TC-----A------------AAAGA-------TCTTA-T-TTCGA-----GAG--GTCAGACAAATAGCCTTACT-TTCGTATTCTATTTATAAATCATAAAACTGCAGGGCTCACTCTGTCATTCGCCAAAGGCATCGATTTG-CAATAAAACAAT
gi|8 : tcagattgtagagatatatgtcttttaactttttatcaacagcagatataataCAG---C---------A----TAAAA------------------------GC----C-A------------T----TC-----A------------AATTA-------TCAAT-T-ATGGA-----GTG--GTC-AAC---TAGCCTTACTATCCGTAGTCTATTTATATATAAGGTAaattataccaaagacatttcgcaagtaaataa
gi|8 : aataaagccaacaaaaCGTAGTCTATTTATA--TATAAGGTAGAGCTAGTATCGGTTCTAGATGTTTA-----------TTG---TTTAATACTACAC-------TT-G-AATACTACACTTGCGTT--TAACACATTCTG-CAGGGATT---AC-----------ATTTATATAT--AATCA-----AGATCAGAATTACATTTAAAAAAAAC-----AAACAAACAGGAAAgagctagtatcggttctagatgtttattgtttaatactacacttgaatactacacttgcgtttaacacattctgcagggattacatttatatataatcaagatcagaattacatttaaaaaaaacaaacaaacaggaaaac
gi|9 : aataaagccaacaaaacagcataaaagccattcaaattatcaattatggagtggtcaactagccttactatcGTATTATACTGTTTAGTGTAATGGGATACCTGTATCTTGGTACATGTACATATTGTATTGTCATTGGTCAAGCAATATACAGCCTTAATac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAAAAACTAAACATCAAGGCCAGATTGCGATAGTAATAGTATATGCTGTATTAGTATT
Unaligned ( gi|17 ): AATCTGATCTGTTAGTCGCATTTCTATGAAATT