lowQualScore : 3333333 2222 8888888888888888888888888888888 111 111 55555555555555 1 222222222222222 3333333333333333 4444444 333333333 22222 3 1111111111 1 1 11 1 1
lowQualScore : 9 2222222 6 0000 5 77 77 5555555555555555555555555555555 0 8 888 333 4 0 3 7 55 0 333 55 66 66666666666666 3 0 2 1 111111111111111 2 1 44 2222222222222222 44 4444444 3 3 1 77 111111111 66 00000 0 4444444444 6 0 1 3 5 6 6 88 5 4 7
lowQualScore : . ....... . .... . .. .. ............................... . . ... ... . . . . .. . ... .. .. .............. . . . . ............... . . .. ................ .. ....... . . . .. ......... .. ..... . .......... . . . . . . . .. . . .
lowQualScore : 2 5555555 7 0000 7 99 99 1111111111111111111111111111111 3 8 888 111 5 5 3 7 22 7 444 00 99 88888888888888 3 5 5 1 999999999999999 9 0 66 2222222222222222 66 1111111 6 7 0 00 000000000 99 88888 0 7777777777 5 0 0 7 0 0 0 55 0 0 0
consensus : NAAATATAATGG-------CTATAATA-TTTTCACCC-C--CC--CC---------------TC------TGT-TNT-TTTTTTCTTTT---AAGTTTGCTTCATCATAAATG-CAAGTNTTA-TGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGA----TGTTGGGGGGTGGGGGGGGGTGAAAATATAATGG-------C-------TATAATATTTTCA-CCCACCCC--CGTCCCC----------TGT--TATTTTTTTTC--TTAAGTTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAATAAGN-A---G---T-GTTCA--TTTT----TGAAAAATATA--TAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATANAGCAAACATATTCTTTG
Reference ( gi|1 ) : AAAATATAATAG-------CTATAATA-TTT-CAGCC-C--CC--CC---------------TT------TGT-CTT-TTTTTTCTTTT---AAGTTTGCTTCATCATAAATG-AAAGTTTTA-TGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGA----TGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCA-CCCACCCC--CGTCCCC----------TGT--TATTTTTTTTCTTTTAAGTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGA-A---G---T-GTTCA--TTTT----AGAACAACATA--TAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTGT
gi|7 : AAATA----AG-------GTATATTA-TTT-TTTCC-C--CC--CC---------------CCATCCACTGT-TTT-TTTTTTCTTTT---ATGTTTGTTT-ATAATAAGT--ACAGCTGTAATGCTTTCTTTATCGTAAT
gi|5 : gttggcgggggggggggggggAAATAGAATGG-------CTATAATA-TTT-TCACC-C--CA--AC------------------------GTACTCGTTTTCCCCGTT---AAGTTTGATTCAATATAAATGCAACG--TTA-TACTACTTTTAT--CAACAGGATAACTGTGTTAAT--TTCTC------T----TT------TTTTAGGGGGAGGGAG----------TATAATAACATT---C-------TATAATATTnnnnnnnnnnttgt
gi|11 : ATATAATGG-------CTGTAATAGTTC-CATCC-CACCC--CC---------------TC------TGT----------TATTTT---AAGTTTGCTTCATAATAAATA-GAAATGTTA-TGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTT
gi|3 : TATAATAGAATTTTGCTATAATA-TTTTCACCC-C--CC--CCCCCCCCCCCCACCCCTC------TGT-TAT-TTTTTT--TTT---AAGTTAACTTTATCATAAATG-GAAGTTTTA-TGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG---------GGGGGGGGGGGGGGG
gi|8 : gaaaatataatggcTATAATA-TTTTCAGCA-C--TC--CC---------------A--------GT-TAT-TTTTTTCTTTT---AAGTTGAGTTCATCATAAATG-CAAGTATTA-TGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTG
gi|6 : TATACTA-TTTTCACCCAC--CCAACC---------------CC------TGT-TAT-TTTTTT--------------GCTTCATCATAAATA-CAACTGTAC-TGCTTTTTTAATCATAATAAG-AAGTTATTTTCtttg
gi|12 : aa-CACCC-C--AC--CC---------------TC----------CTC-TGTTATGTTTT---AAGTTTGCTTCATCATAAATG-CAAGTTTTA-TGCTTTTTTTATC---ATAAA-TAGTTGTGgcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|9 : tattttcacccggtaatgccccccccCTTTTCCCAAGTTTGCTTAAACAT---TG-CA-GTTTTA-TGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---A----TG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------
gi|10 : tgctacTTGCTTCATCATAAATA-CAACTGTAA-TGCTTTCTTTATCATAGTAAG-AAGTTCTGTTCA---TTTTTGAAAAATATA-----------TTAGGGGGT---GGTGGGTGAAAACATATTGG-------C-------T
gi|19 : GTTTCATCATAAGTA-CAACTTTAA-TGCTTTCTTTATctttcctcatcag
gi|3 : TTATGATAAA---AAAGCATAA-AACTTCCATT--TATGATAA---AGTTAACTTAA--------AAAAAAAATAACAGAGGGGTGGGGGGGGG-GGGGGGGGGTGAAAATATTATAG-------C-------
gi|4 : gaaaatataatggctataatagaattttA-TGCTTTCTTTATCATAATAGG-AA---GTGTTAAT--TTTTGAAAGAAAATAA---A----T------AGGT-----GTGGTGAAAACATAATGG-------C-------TATAATtaaatagttgttcattttttagaaaatataactgggggggggggggggg
gi|2 : atataacgtctctactattttcacatacccctgtgttatttttttcttctgtaGG----TGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTA-CCCACCCC--CATCCCC----------TGT--TATTTTTtataatgataaattttaaatatagcaaatatattcttt
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagGTTGGCGGGGGGGGGGGGG-GGAAATA----AG-------G-------TATATTATTTTTT-CCCCCCCC--CATCCAC----------TGT--T-TTTTTTTTCTTTTATGTTTGTTT-ATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAATatgccccccccc
gi|7 : GGATGGGGGGGG--GAAAAAATAATA----------------TACCTTATTTCCC-CCCCCCCC--Cnnnnnnnnnnttgt
gi|13 : gttggcgggGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCA-CCactgttttttttttcttttatgtttgtttataataagtacagctgtaatgctttctttatcgtaatnnnnnnnnnnttgt
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT-----CCCCCCCC--CCACCAC----------TATAATATTTTactataatatttt
gi|18 : ccacaGAAAATATACTGG-------C-------TATAATATTTTCA-CC
gi|5 : AAATAGAATGG-------C-------TATAATATTTTCA-CC--CCAA--CGTACTC-----------G-------TTTTCCCCGTTAAGTTTGATTCAATATAAATGCAAC-GTTATACTACTTTTATC--AACAGGATAACTG---T-GTTAA--TTTtgggtgaaaa
gi|11 : ATATAATGG-------C-------TGTAATAGTTCCATCCCACCCC--C----TC----------TGT--TATTTT---------AAGTTTGCTTCATAATAAATAGAAATGTTATGCTTTCTTTATCATAAAAAGT-A---GTTTT-GTTCA--Tctctttttttagggggagggagtataataacattctataatatt
gi|4 : ATATAACGT-------C-------TCTACTATTTTCA-CATACCCC--TGT---------------GT--TATTTTTTT-CTT--------------------------CTGTAATGCTTTCTTTATCATAATAGGA-A---G---T-GTTAA--TTTTTGAAAGAA-AATAAA--TA-------GGTGTGGTGAAAACATAATGGCTATAATacttttt
gi|3 : TATAATAGAATTTTGC-------TATAATATTTTCA-CCCCCCCC--CCCCCCCCCCACCCCTCTGT--TATTTTTTTT---TTAAGTTAACTTTATCATAAATGGAAGTTTTATGCTTT-TTTATCATAATAAAT-A---G---TTGTTCATTTTTT----AGAA-AATATAACTGGGGGGGGGGGG-GGtataatgataaattttaaatatagcaaatatattcttt
gi|16 : gaaaatataatggcG-------C-------CATAATATTTT-----CACCCC--CAT---C----------TGT--TATTTTTgg
gi|8 : -------TATAATATTTTCA-GC-ACTCC--CA----------------GT--TATTTT-TTTCTTTTAAGTTGAGTTCATCATAAATGCAAGTATTATGAATTTTTAATCATAATAAGT-AGTTG---T-GTTCA--TCTT----TGAA-AAAATA--TAAatgccccccccc
gi|6 : -------TATACTATTTTCA-CCCACCC----AACCCC----------TGT--TATTTTTTT------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGA-A---G-------TTA--TTTT----ttgtttg
gi|12 : aaTAATGCCCCCC-CCCACCCCACCCTCCTC----------TGT--TATGTTTT-------AAGTTTGCTTCATCATAAATGCAAGTTTTATGCTTTTTTTATCATAAcgcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|9 : tattttcacccgg----------TGC--TACCTTTTCCC----AAGTTTGCTTAAACAT---TGCAGTTTTA-TGCGATCTTTATCATAATAAAT-ACTTG---T-GCTCA--ATTT----TGAAAAAAA-----AATGGGGCGGTG-GGatagttgtg
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAagtagggggaatattatagc
gi|14 : TTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGA-A---G---agaag
gi|10 : TTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGA-A---GTTCT-GTTCA--TTTT----TGAAAAATATA--TTAGGGGGTGGTG-GGTGAAAACATATTGGCT
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATctttcctcatcag
gi|18 : GAAAATATACTGGCTATAATATTTTCACC
gi|6 : TATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGtgggtgaaaa
gi|4 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGATAAATT--TTAAATATAGCAAATATATTCTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATTATAGAATTTTGCTATAATATTATCACCCCACCTCCCCAGCCCCC
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC
Alignments
lowQualScore : 4444444444444444 555555555555555 222222222 33333333333333333333 666666666 1111 222 1 1 1
lowQualScore : 4444444444444444 1 6 333333333333333 0 3 1 111111111 0 1 4 5 5 99 8 666 9999 3 1 8 333 44444444444444444444 2 2 99 666666666 4 1 1 7777 0 1 333 7 3 3 1 77777777777 2 2 1 0 0
lowQualScore : ................ . . ............... . . . ......... . . . . . .. . ... .... . . . ... .................... . . .. ......... . . . .... . . ... . . . . ........... . . . . .
lowQualScore : 2222222222222222 7 6 666666666666666 7 0 0 555555555 7 0 0 0 7 22 8 888 5555 2 3 4 111 33333333333333333333 2 5 22 555555555 2 5 0 2222 2 2 333 3 7 3 0 77777777777 3 0 0 7 7
consensus : NAAATATAATGGCTA----------------TAATATTTTCACCCC-C-------------CCCCTCTGTTATTTTTTTCTTTT---AAGTTTGCTTCATCATAAATGCAAGTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTA-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
Reference ( family-2501 ) : NAAATATAATGGCTA----------------TAATATTTTCACCCC---------------CCCCTCTGTTNTTTTTTTCTTTT---AAGTTTGCTTCATCATAAATGCAAGTNTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTC--TTAAGTTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAATAAGNAG---TGTTCATTTTTGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATANAGCAAACATATTCTTTG
gi|1 : AAATATAATAGCTA----------------TAATATTT-CAGCCC---------------CCCCTTTGTCTTTTTTTTCTTTT---AAGTTTGCTTCATCATAAATGAAAGTTTTATGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTAAGTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTAGA---ACAACATATAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTG
gi|10 : aTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGAAGTTCTGTTCATTTTTGA---AAAATATATTAGGGGGTGGTG-GGTGAAAACATATTGGCTt
gi|11 : ATATAATGGCTG----------------TAATAGTTCCATCCCAC-------------CCCCTCTGTTATTTT-----------AAGTTTGCTTCATAATAAATAGAAATGTTATGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTctttcctcatcag
gi|12 : CACCCCACC------------CTCCTCTGTTATGTTTT---------AAGTTTGCTTCATCATAAATGCAAGTTTTATGCTTTTTTTATC---ATAAA-TAGTTGTGt
gi|13 : tattttcacccggtaatgccccccccGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCACC
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT----CCCCCCCCCCACCACTATAATATTTTactataatatttt
gi|14 : ccacaTTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGAAG---
gi|16 : GCCA----------------TAATATTTTCA--CC---------------CCCATCTGTTATTTTT
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAatgccccccccc
gi|18 : GAAAATATACTGG-------C-------TATAATATTTTCACCagaag
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATtgggtgaaaa
gi|2 : GGTGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTACCCACCCCCATCCCCTGT--TATTTTT
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagAAATATAATGGCTATAATAGAATTTTGCTATAATATTTTCACCCCCCCCCCCCCCCCCCACCCCTCTGTTATTTTTT--TTTT---AAGTTAACTTTATCATAAATGGAAGTTTTATGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG-----GGGGGGGGGGGGGGGatgccccccccc
gi|4 : gaATATAACGT-------C-------TCTACTATTTTCACATACCCCTGT-----GT--TATTTTTTT-------------CTTC--------------TGTAATGCTTTCTTTATCATAATAGGAAG---TGTTAATTTTTGAAAGAAAATAAATA-------GGTGTGGTGAAAACATAATGGCTATAA--------------------TTATAAT--GATAAAT--TTTAAATATAGCAAATATATTCTTT
gi|5 : AAATAGAATGGCTA----------------TAATATTTTCACCCC---------------AAC--GTACTCGTTTTCCCCGTT---AAGTTTGATTCAATATAAATGCAA-CGTTATACTACTTTTATC--AACAGGATAACTGTGTTAAT--TTCT------------CTTTTTTTAGGGG--GAGGGAGTATAATAACAT--T---------C-------TATAATATT
gi|6 : -------TATACTATTTTCACCCACCC--AACCCCTGT--TATTTTTTT------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGAAG------TTATTTTCG
gi|6 : aaTATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|7 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGTTGGCGGGGGGGGGGGGGGGAA---ATAA-GG---------------TATATTATTTTTTCCCCCCCCCATCCACTGT--T-TTTTTTTTCTTTTATGTTTG-TTTATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAAT
gi|8 : TA----------------TAATATTTTCAGCAC---------------TCCCA--GTTATTTTTTTCTTTT---AAGTTGAGTTCATCATAAATGCAAGTATTATGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTGnnnnnnnnnnttgt
gi|9 : CTTTTCCCAAGTTTGCTTAAACAT---TGCA-GTTTTATGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---ATG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------tttg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTATAGAATTTTGCTATAATATTATCACCCCACCTCCCCAGCCCCC
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC
Alignments
lowQualScore : 111 22 33333333333333 222222 33333333333333333333 5555555555 1111 222 1 22222222222 1 1
lowQualScore : 3 111 1 6 11 33333333333333 00 666666 0 5 1 4 5 5 99 8 666 9999 3 1 8 333 11111111111111111111 2 2 99 5555555555 4 7777 0 4 333 7 3 3 1 77777777777 2 2
lowQualScore : . ... . . .. .............. .. ...... . . . . . . .. . ... .... . . . ... .................... . . .. .......... . .... . . ... . . . . ........... . .
lowQualScore : 0 222 7 6 44 66666666666666 88 444444 7 7 6 0 0 7 22 8 888 5555 2 3 4 111 88888888888888888888 2 5 22 5555555555 2 2222 2 2 333 3 7 3 0 77777777777 0 0
consensus : NAAATANAATG--GCTATAATATTTTCACCCCA-CCCC--------------CTCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
Reference ( family-2501 ) : NAAATATAATG--GCTATAATATTTTCACCCC--CCCC--------------CTCTGTTATTTTTTTCTTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
gi|1 : AAATATAATA--GCTATAATATTT-CAGCCC--CCCC--------------TT-TGTCTTTTTTTTCTTTTAAGTTTGCTTCATCATAAATGAAA-GTTTTATGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTAA-GTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTAGA---ACAACATATAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTG
gi|10 : aTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGAAGTTCTGTTCATTTTTGA---AAAATATATTAGGGGGTGGTG-GGTGAAAACATATTGGCTt
gi|11 : ATATAATG--GCTGTAATAGTTCCATCCCA-CCCC--------------CTCTGTTATTTT--------AAGTTTGCTTCATAATAAATAGAA-ATGTTATGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTctttcctcatcag
gi|12 : CACCCCACCCTC--------------CTCTGTTATGTTTT------AAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTTTTTATC---ATAAA-TAGTTGTGt
gi|13 : tattttcacccggtaatgccccccccGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCACC
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT----CCCCCCCCCCACCACTATAATATTTTactataatatttt
gi|14 : ccacaTTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGAAG---
gi|16 : --GCCATAATATTTTCA---C--CCCC--------------ATCTGTTATTTTT
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAatgccccccccc
gi|18 : GAAAATATACTGG-------C-------TATAATATTTTCACCagaag
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATtgggtgaaaa
gi|2 : GGTGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTACCCACCCCCATCCCCTGT--TATTTTT
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagAATAGAATTTTGCTATAATATTTTCACCCC--CCCCCCCCCCCCCCACCCCTCTGTTATTTTTTT--TTTAAGTTAACTTTATCATAAATGGAA-GTTTTATGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG-----GGGGGGGGGGGGGGGatgccccccccc
gi|4 : gaaaatataatggctatATATAACGT-------C-------TCTACTATTTTCACATACCCCTGT-----GT--TATTTTTTT--------------CTTC--------------TGTAATGCTTTCTTTATCATAATAGGAAG---TGTTAATTTTTGAAAGAAAATAAATA-------GGTGTGGTGAAAACATAATGGCTATAA--------------------TTATAAT--GATAAAT--TTTAAATATAGCAAATATATTCTTT
gi|5 : AAATAGAATG--GCTATAATATTTTCACCCCAACGTA--------------CTC-G----TTTTCCCCGTTAAGTTTGATTCAATATAAATGCAACG--TTATACTACTTTTATC--AACAGGATAACTGTGTTAAT--TTCT------------CTTTTTTTAGGGG--GAGGGAGTATAATAACATT-----------C-------TATAATATT
gi|6 : -------TATACTATTTTCACCCACCC--AACCCCTGT--TATTTTTTT-------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGAAG------TTATTTTCG
gi|6 : aaTATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|7 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGTTGGCGGGGGGGGGGGGGGGAA---ATAA-GG---------------TATATTATTTTTTCCCCCCCCCATCCACTGT--T-TTTTTTTTCTTTT-ATGTTTG-TTTATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAAT
gi|8 : TATAATATTTTCAGCAC--TCCC--------------A---GTTATTTTTTTCTTTTAAGTTGAGTTCATCATAAATGCAA-GTATTATGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTGnnnnnnnnnnttgt
gi|9 : TGCTACCTTTTCCC---AAGTTTGCTTAAACAT---TGCA--GTTTTATGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---ATG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------tttg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTATAGAATTTTGCTATAATATTATCACCCCACCTCCCCAGCCCCC
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC
Alignments
lowQualScore : 222 2222222222222 111111 33333333333333333333 5555555555 1111 222 1 22222222222 1 1
lowQualScore : 1 111 0 88 5 7777777777777 0 666666 0 5 1 4 5 5 99 8 666 9999 3 1 8 333 11111111111111111111 2 2 99 5555555555 4 7777 0 4 333 7 3 3 1 77777777777 2 2
lowQualScore : . ... . .. . ............. . ...... . . . . . . .. . ... .... . . . ... .................... . . .. .......... . .... . . ... . . . . ........... . .
lowQualScore : 0 555 1 11 0 5555555555555 1 777777 7 7 6 0 0 7 22 8 888 5555 2 3 4 111 88888888888888888888 2 5 22 5555555555 2 2222 2 2 333 3 7 3 0 77777777777 0 0
consensus : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
Reference ( family-2501 ) : NAAATANAATG--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
gi|1 : AAATATAATA--GCTATAATATTT-CAGCCC---CC-CC-------------TTTGTCTTTTTTTTCTTTTAAGTTTGCTTCATCATAAATGAAA-GTTTTATGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTAA-GTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTAGA---ACAACATATAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTG
gi|10 : aTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGAAGTTCTGTTCATTTTTGA---AAAATATATTAGGGGGTGGTG-GGTGAAAACATATTGGCTt
gi|11 : ATATAATG--GCTGTAATAGTTCCATCCC-ACCC-CC-------------TCTGTTATTTT--------AAGTTTGCTTCATAATAAATAGAA-ATGTTATGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTctttcctcatcag
gi|12 : CACCCC-ACCCTCC-------------TCTGTTATGT------TTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTTTTTATC---ATAAA-TAGTTGTGt
gi|13 : tattttcacccggtaatgccccccccGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCACC
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT----CCCCCCCCCCACCACTATAATATTTTactataatatttt
gi|14 : ccacaTTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGAAG---
gi|15 : ATAGAATTTTGCTATAATATTATCACCCC-ACCT-CC-------------CC
gi|16 : att--GCCATAATATTTTCAC-----CCC-CA-------------TCTGTTATTTTTagccccc
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAatgccccccccc
gi|18 : GAAAATATACTGG-------C-------TATAATATTTTCACCagaag
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATtgggtgaaaa
gi|2 : GGTGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTACCCACCCCCATCCCCTGT--TATTTTT
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagAATAGAATTTTGCTATAATATTTTCACCCC-CCCC-CCCCCCCCCCACCCCTCTGTTATTTTTTT--TTTAAGTTAACTTTATCATAAATGGAA-GTTTTATGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG-----GGGGGGGGGGGGGGGatgccccccccc
gi|4 : gaaaatataatggctatATATAACGT-------C-------TCTACTATTTTCACATACCCCTGT-----GT--TATTTTTTT--------------CTTC--------------TGTAATGCTTTCTTTATCATAATAGGAAG---TGTTAATTTTTGAAAGAAAATAAATA-------GGTGTGGTGAAAACATAATGGCTATAA--------------------TTATAAT--GATAAAT--TTTAAATATAGCAAATATATTCTTT
gi|5 : AAATAGAATG--GCTATAATATTTTCACCCCAACGT-AC-------------TC-G----TTTTCCCCGTTAAGTTTGATTCAATATAAATGCAACG--TTATACTACTTTTATC--AACAGGATAACTGTGTTAAT--TTCT------------CTTTTTTTAGGGG--GAGGGAGTATAATAACATT-----------C-------TATAATATT
gi|6 : -------TATACTATTTTCACCCACCC--AACCCCTGT--TATTTTTTT-------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGAAG------TTATTTTCG
gi|6 : aaTATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|7 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGTTGGCGGGGGGGGGGGGGGGAA---ATAA-GG---------------TATATTATTTTTTCCCCCCCCCATCCACTGT--T-TTTTTTTTCTTTT-ATGTTTG-TTTATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAAT
gi|8 : TATAATATTTTCAGC---ACTC-CC-------------A--GTTATTTTTTTCTTTTAAGTTGAGTTCATCATAAATGCAA-GTATTATGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTGnnnnnnnnnnttgt
gi|9 : TGCTACCTTTTCCC---AAGTTTGCTTAAACAT---TGCA--GTTTTATGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---ATG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------tttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC
Alignments
lowQualScore : 111 2222222222222 111111 33333333333333333333 5555555555 1111 222 1 22222222222 1 1
lowQualScore : 999 0 88 5 7777777777777 0 666666 0 5 1 4 5 5 99 8 666 9999 3 1 8 333 11111111111111111111 2 2 99 5555555555 4 7777 0 4 333 7 3 3 1 77777777777 2 2
lowQualScore : ... . .. . ............. . ...... . . . . . . .. . ... .... . . . ... .................... . . .. .......... . .... . . ... . . . . ........... . .
lowQualScore : 333 1 11 0 5555555555555 1 777777 7 7 6 0 0 7 22 8 888 5555 2 3 4 111 88888888888888888888 2 5 22 5555555555 2 2222 2 2 333 3 7 3 0 77777777777 0 0
consensus : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
Reference ( family-2501 ) : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
gi|1 : AAATATAATA--GCTATAATATTT-CAGCCC---CC-CC-------------TTTGTCTTTTTTTTCTTTTAAGTTTGCTTCATCATAAATGAAA-GTTTTATGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTAA-GTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTAGA---ACAACATATAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTG
gi|10 : aTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGAAGTTCTGTTCATTTTTGA---AAAATATATTAGGGGGTGGTG-GGTGAAAACATATTGGCTt
gi|11 : ATATAATG--GCTGTAATAGTTCCATCCC-ACCC-CC-------------TCTGTTATTTT--------AAGTTTGCTTCATAATAAATAGAA-ATGTTATGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTctttcctcatcag
gi|12 : CACCCC-ACCCTCC-------------TCTGTTATGT------TTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTTTTTATC---ATAAA-TAGTTGTGt
gi|13 : tattttcacccggtaatgccccccccGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCACC
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT----CCCCCCCCCCACCACTATAATATTTTactataatatttt
gi|14 : ccacaTTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGAAG---
gi|15 : ATAGAATTTTGCTATAATATTATCACCCC-ACCT-CC-------------CC
gi|16 : att--GCCATAATATTTTCAC-----CCC-CA-------------TCTGTTATTTTTagccccc
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAatgccccccccc
gi|18 : GAAAATATACTGG-------C-------TATAATATTTTCACCagaag
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATtgggtgaaaa
gi|2 : GGTGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTACCCACCCCCATCCCCTGT--TATTTTT
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagAATAGAATTTTGCTATAATATTTTCACCCC-CCCC-CCCCCCCCCCACCCCTCTGTTATTTTTTT--TTTAAGTTAACTTTATCATAAATGGAA-GTTTTATGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG-----GGGGGGGGGGGGGGGatgccccccccc
gi|4 : gaaaatataatggctatATATAACGT-------C-------TCTACTATTTTCACATACCCCTGT-----GT--TATTTTTTT--------------CTTC--------------TGTAATGCTTTCTTTATCATAATAGGAAG---TGTTAATTTTTGAAAGAAAATAAATA-------GGTGTGGTGAAAACATAATGGCTATAA--------------------TTATAAT--GATAAAT--TTTAAATATAGCAAATATATTCTTT
gi|5 : AAATAGAATG--GCTATAATATTTTCACCCCAACGT-AC-------------TC-G----TTTTCCCCGTTAAGTTTGATTCAATATAAATGCAACG--TTATACTACTTTTATC--AACAGGATAACTGTGTTAAT--TTCT------------CTTTTTTTAGGGG--GAGGGAGTATAATAACATT-----------C-------TATAATATT
gi|6 : -------TATACTATTTTCACCCACCC--AACCCCTGT--TATTTTTTT-------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGAAG------TTATTTTCG
gi|6 : aaTATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|7 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGTTGGCGGGGGGGGGGGGGGGAA---ATAA-GG---------------TATATTATTTTTTCCCCCCCCCATCCACTGT--T-TTTTTTTTCTTTT-ATGTTTG-TTTATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAAT
gi|8 : TATAATATTTTCAGC---ACTC-CC-------------A--GTTATTTTTTTCTTTTAAGTTGAGTTCATCATAAATGCAA-GTATTATGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTGnnnnnnnnnnttgt
gi|9 : TGCTACCTTTTCCC---AAGTTTGCTTAAACAT---TGCA--GTTTTATGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---ATG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------tttg
blockSeqs : TTT AA T CCCCCCCCACCCC TCCCCG C G C A A AC T TAT CTTT T T T AAA TATAGCAAAATTC C A AA TCTTTTATG C TTCT T AAG A T T T TATTTTCGCCC T C
blockSeqs : TTT A . . TTTCTT . T T A . . G TAT CTG T T T AAA TATAGAATTTTGC A C . . T T T . . . . A . . .
blockSeqs : G A . . TTCCC . T T A . . G . A T G T ATA ACTGGC G C . . T . C
blockSeqs : G A . . TTTT . A T A . . . . . G G GGA AACGTC A A . T
blockSeqs : C . . T . T C . . . . T . GA TATAGC A . . C
blockSeqs : A . . . . . . . . . . AA AAGG C
blockSeqs : . . . . TC .
blockSeqs : C
blockSeqCons : A*
originalCons : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
finalCons : NAAATAGAATN--GCTATAATATTTTCACCCCA-CCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC
Alignments
lowQualScore : 111 2222222222222 111111 33333333333333333333 5555555555 1111 222 1 22222222222 1 1
lowQualScore : 999 0 88 5 7777777777777 0 666666 0 5 1 4 5 5 99 8 666 9999 3 1 8 333 11111111111111111111 2 2 99 5555555555 4 7777 0 4 333 7 3 3 1 77777777777 2 2
lowQualScore : ... . .. . ............. . ...... . . . . . . .. . ... .... . . . ... .................... . . .. .......... . .... . . ... . . . . ........... . .
lowQualScore : 333 1 11 0 5555555555555 1 777777 7 7 6 0 0 7 22 8 888 5555 2 3 4 111 88888888888888888888 2 5 22 5555555555 2 2222 2 2 333 3 7 3 0 77777777777 0 0
consensus : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
Reference ( family-2501 ) : NAAATAGAATN--GCTATAATATTTTCACCCC-ACCC-CC-------------TCTGTTATTTTTTTCCTTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTCTTTATCATAATAAG-TAGTTGTGTTCAT--TTTTNAAAAAATATAACTGATGTTGGGGGGTGGGGGGGGGTGAAAATATNATGG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTT-A-GTTTGCTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTCGA---AAAATATATAAGGGGGCGGTG-GGTGAAAACATANTGGCTATAATATTTTCGCC-GCCCCTCTTTTCTCATCAGATAAATCATTTAAATAAAGCAAATATATTTTTTG
gi|1 : AAATATAATA--GCTATAATATTT-CAGCCC---CC-CC-------------TTTGTCTTTTTTTTCTTTTAAGTTTGCTTCATCATAAATGAAA-GTTTTATGCTTTCTTTATTATAATAAG-TAGTTGTGTTCAT--TTTTTAAAAAATATAATTGATGTTGGGGGGTGGGGGGGGGTGAAAATATAATAG-------C-------TATAATATTTTCACCCACCCCCGTCCCCTGT--TATTTTTTTTCTTTTAA-GTTTGTTTCATCATAAGTACAACTGTAATGCTTTCTTTATCATAATAAGAAG---TGTTCATTTTAGA---ACAACATATAAGGGGGCGGTG-GGTGAAAATATACTGGCTATAATATTTTCACCGGCCCCTCTTTCCTCATCAGATAAATTATTTCAATAAAGCAAATATTTTTTTTG
gi|10 : aTTGCTTCATCATAAATACAACTGTAATGCTTTCTTTATCATAGTAAGAAGTTCTGTTCATTTTTGA---AAAATATATTAGGGGGTGGTG-GGTGAAAACATATTGGCTt
gi|11 : ATATAATG--GCTGTAATAGTTCCATCCC-ACCC-CC-------------TCTGTTATTTT--------AAGTTTGCTTCATAATAAATAGAA-ATGTTATGCTTTCTTTATCATAAAAAG-TAGTTTTGTTCATACTTTTctttcctcatcag
gi|12 : CACCCC-ACCCTCC-------------TCTGTTATGT------TTTAAGTTTGCTTCATCATAAATGCAA-GTTTTATGCTTTTTTTATC---ATAAA-TAGTTGTGt
gi|13 : tattttcacccggtaatgccccccccGGTGGGGGGGGG---GAATATTATAG-------CAAAATTCTATAATATTTTCACC
gi|13 : ccacaGGTGAAAATATTATAGAATTTTGC-------TATAATATT----CCCCCCCCCCACCACTATAATATTTTactataatatttt
gi|14 : ccacaTTTTTTTCACCCTAAATACTGCTGTAATTCTTTCTTTG-CATAGTAAGAAG---
gi|15 : ATAGAATTTTGCTATAATATTATCACCCC-ACCT-CC-------------CC
gi|16 : att--GCCATAATATTTTCAC-----CCC-CA-------------TCTGTTATTTTTagccccc
gi|17 : TTTGTTGCATCATTAGTACAACTGTAATGCTTTCTTTAatgccccccccc
gi|18 : GAAAATATACTGG-------C-------TATAATATTTTCACCagaag
gi|19 : GTTTCATCATAAGTACAACTTTAATGCTTTCTTTATtgggtgaaaa
gi|2 : GGTGTTTGTGTGTGTGGGGGGGTG-------------------C-------TATAATATTTTTACCCACCCCCATCCCCTGT--TATTTTT
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagAATAGAATTTTGCTATAATATTTTCACCCC-CCCC-CCCCCCCCCCACCCCTCTGTTATTTTTTT--TTTAAGTTAACTTTATCATAAATGGAA-GTTTTATGCTTT-TTTATCATAATAAA-TAGT--TGTTCAT--TTTTTAGAAAATATAACTG-----GGGGGGGGGGGGGGGatgccccccccc
gi|4 : gaaaatataatggctatATATAACGT-------C-------TCTACTATTTTCACATACCCCTGT-----GT--TATTTTTTT--------------CTTC--------------TGTAATGCTTTCTTTATCATAATAGGAAG---TGTTAATTTTTGAAAGAAAATAAATA-------GGTGTGGTGAAAACATAATGGCTATAA--------------------TTATAAT--GATAAAT--TTTAAATATAGCAAATATATTCTTT
gi|5 : AAATAGAATG--GCTATAATATTTTCACCCCAACGT-AC-------------TC-G----TTTTCCCCGTTAAGTTTGATTCAATATAAATGCAACG--TTATACTACTTTTATC--AACAGGATAACTGTGTTAAT--TTCT------------CTTTTTTTAGGGG--GAGGGAGTATAATAACATT-----------C-------TATAATATT
gi|6 : -------TATACTATTTTCACCCACCC--AACCCCTGT--TATTTTTTT-------------GCTTCATCATAAATACAACTGTACTGCTTTTTTAATCATAATAAGAAG------TTATTTTCG
gi|6 : aaTATTTTCGCCCGCCCCTCTTTTCTCATTAGATAAATCATTTAAATAAAGCAAACATATTTTTTGcccgcccctcttttctcattagataaatcatttaaataaagcaaacatattttttg
gi|7 : aatatactattttcacccacccaacccctgttatttttttgcttcatcataaatacaactgtactgcttttttaatcataataagaagtGTTGGCGGGGGGGGGGGGGGGAA---ATAA-GG---------------TATATTATTTTTTCCCCCCCCCATCCACTGT--T-TTTTTTTTCTTTT-ATGTTTG-TTTATAATAAGTACAGCTGTAATGCTTTCTTTATCGTAAT
gi|8 : TATAATATTTTCAGC---ACTC-CC-------------A--GTTATTTTTTTCTTTTAAGTTGAGTTCATCATAAATGCAA-GTATTATGAATTTTTAATCATAATAAG-TAGTTGTGTTCAT--CTTTGAAAAAATATAATTGnnnnnnnnnnttgt
gi|9 : TGCTACCTTTTCCC---AAGTTTGCTTAAACAT---TGCA--GTTTTATGCGATCTTTATCATAATAAA-TACTTGTGCTCAA--TTTTGAAAAAA---AA---ATG--GGGCGGTGGGAGTAGG-GGGAATATTATAG-------C-------tttg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TCACCCACGGGTAAAAATATTATAGAATTTTGC