lowQualScore : 22 1 777777777777 2 1 1 333 1 33 1 11111 1 1 1 1 1111 222222222 222222222222 1 11 4444 1 1111 1 333 1 11 22
lowQualScore : 11 5 0 99 99 777777777777 6 4 5 5 7 3 000 5 6 6 6 3 6 55 6 3 2 6 77 5 44444 6 6 1 6 1 1 8 9 5 6 7 2 6 8 5 77 1 7777 0 5 111111111 55 2 3 777777777777 1 0 7 33 0 2 2 22 6 66 9999 1 0 3 3 5 2 7777 55 55 2 3 444 2 55 88 2 1 1 555 3 88 6666 5 0 33 4 4 5 6
lowQualScore : .. . . .. .. ............ . . . . . . ... . . . . . . .. . . . . .. . ..... . . . . . . . . . . . . . . . .. . .... . . ......... .. . . ............ . . . .. . . . .. . .. .... . . . . . . .... .. .. . . ... . .. .. . . . ... . .. .... . . .. . . . .
lowQualScore : 00 3 0 22 22 555555555555 0 7 0 0 5 0 000 0 0 0 0 3 0 77 7 3 5 0 99 7 33333 7 7 3 7 0 0 3 3 0 0 0 8 0 0 7 99 7 5555 2 0 444444444 00 5 3 777777777777 7 1 0 22 9 4 6 22 0 11 2222 4 0 6 6 6 5 0000 00 00 2 1 777 2 66 66 2 1 1 888 6 88 8888 4 7 11 4 4 6 0
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACAC--ACA--CACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGT-GATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGAAATTTTGAATGNGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACC-AT--AAGT----GTTCCTT-CTCT-NG-AG--AAGGAACAAT-AATAAAAGT--TT-------GAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC--ATATAAGAG--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCAATTTCCAAGCATCA-TTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATAC-ATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( gi|1 ) : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACAC--ACA--CA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGT-G-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAA-T-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGAATTTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATC-AT--AAGT----GTTCCTT-CTCT-TG-AG--AAGGAACAAT-AATAAAAAA--TT-------GAAGGCTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC--ATATAAGAGTGTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCAATTTTCAAGCATCA-TTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-C-ATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA------------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGG-TTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTT-GCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGAAATTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACC-AT--AAGT----GTACCAT-CTCT-CG-AG--AAGGAACAATCAAT
gi|3 : caacaagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACAC--ACATACA------------TTTTACACATATGCATTTACGGAACGCAAGA-AAAAGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGT-GATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAAC-TTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGAAATTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATC-AT--AAGT----GTTCATT-CTCT-TG-AG--AAGTAACAAT-AAc
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACAC--ACA--CACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAG----------------------CATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGT-GATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTT-GCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGAAATTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTG----TATTATCTGCTCAGTCAAGTGTAAATTGTCCATA-AT--GAAT----Gat
gi|6 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACAC--ACA--CACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGT-GATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTTAAAACT-T-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|5 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACAC--ACA--CA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGT-GATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTT-CCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|11 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN--NNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGA--AAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGG-CTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTTAAAACT-T-GCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCA
gi|17 : aagattttgcctagcaaaaggttccttctagcacatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGC
gi|24 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctTGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA-GAC-AATTTT--AGTG---ACCATAGTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTAAAATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACC-AT--AAAT----GTTCCTT-CTCT-TG-AG--AAGGAACAAT-AA
gi|21 : CTAGTCCTCTG-CATATTACGAAATTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCC
gi|13 : gATGCCCACC-ATTGAATTTT--GTTCTTT-TTCT----------------AC-AGTAAAAAA--TG-------TCATGTTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC--ATATAAGA--GCTTTTTTTCT--T-------TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCAA--TACAAA-AGTG-TTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATAC-ATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGCAg
gi|12 : tgtGCCCACC-AT--TAGTTTTTGTTTATT-CTAT---------AGTAA--AT-AACAAAAAT--CT-------GCAAGCTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC--ATCCAAAAG----ATTTTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCAATTTCCAAGCAT-A--TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATAT-ATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCATtggtggtactattcc
gi|8 : ggagtaaCCATTGAT--AATT----GTTCTTTATTCT-AT-AG--TA-----AAT-AATAAAAGT--TT-------GAAGGCTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC--ATATAAGAGATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCAATTTCCAAGCATTA-TTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATAC-ATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATGTTACT-CC--ACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|19 : tgttatcccaT----GTTCCTT-CTCA-AG-AG--AAGGAACAtgcc
gi|14 : atgaatatgcatgagtccaaaaaaagcggtagactggtcctctgcgtactaaaattttttaaataagtaccataataggacagggaaccagattaagatggcggcgccctactgttcgacatgcctttgacagtacccttgtatccattatctgctcagtcaagtgtaaattgtccaccataaaCCTT-TTCTATGTAGTGAACGAACTAT-TTTAAGAA-----------------CTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT--AGCTA------TTTCTTTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAAATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCT-TTAAAATGTTCCA-AACAC-ATC---AAT---------AT----------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTataa
gi|7 : tgtaagcaccatatatttccagAAT-AATAAAAGT--TT-------GAAGGCTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCAT-TTTCCTATATAAGAG-ATTTTTTTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCAATTTCCAAGCATCA-TTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATAC-ATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAaccagt
gi|10 : tgtaaacccaccattgatttttgttctttattctatagtaAAG-AATAAAAGT--TT-------GAAGGCTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC--ATATAAGAG----ATATATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCAATTTCCAAGCATTA--TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATAC-ATC-AAAATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTAtgcc
gi|15 : actttttattgtttatatcatagttAGT-AATTAAAATGTTT-------GCATGGTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC--A-----GA-----TTTTTACTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCATTTCCCGAGCATCA---TTTT--T--TTCTG-------AATGCAAACCTGACAATGCTTTCAAAATTTTCAA-AATAG-ATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT------TG------------TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTAtgc
gi|16 : ttgttgttagttctttattattttAAT-AGTAAAAGT--TT-------AAAGGCTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC--ATATAAGtgtc
gi|9 : tttataggtctatagtaT-AGTAAAAAG--TTAAAGTCTGAAGGCATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC--ATATAAGAGA--TTTTTTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAAATTTCCAAGCATAA-ATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AAT-A-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtaaactttcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|27 : tgtaatcccaccattgatttttgttctttattcttTTTATTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACctgc
gi|18 : gacaCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCAATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAAT-A-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGATTAT
gi|16 : AAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA-ATCT-TTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AAT-CGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACgcaacatttactatttccaatggtggtactatgcc
gi|26 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatat--T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAG-ATCAACACTATCATTGAAAg
gi|20 : AAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAG-ATTAAAAc
gi|22 : TTCAA-AATAC-ACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AACA----AGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAcaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCATTatgctat
gi|12 : TAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAtcctgtttccaatggcggtacaatgcct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA
Alignments
lowQualScore : 666666666666 1 11111 111111111111 11111 1111 22222222222222 11 222222 1111
lowQualScore : 111111111111 5 1 2 5 1 0 66 5 22222 5 5 5 0 5 77 1 6 4 555555555555 00000 1 7777 55555555555555 3 3 4 1 11 4 444444 0 3 3 3 1111 44 44 0 0 2 5 1 0 3 77 1 0 0 555 3 2 6666 0 0 0 44 3 55
lowQualScore : ............ . . . . . . .. . ..... . . . . . .. . . . ............ ..... . .... .............. . . . . .. . ...... . . . . .... .. .. . . . . . . . .. . . . ... . . .... . . . .. . ..
lowQualScore : 444444444444 0 3 3 0 4 7 99 0 55555 7 7 7 7 7 99 7 6 1 111111111111 00000 4 1111 22222222222222 1 6 0 1 00 0 111111 4 3 3 6 5555 66 66 8 2 9 4 4 3 3 99 2 3 3 444 3 2 2222 8 3 8 33 1 33
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTN----GAGNAGGAACAAT-AAT-AAAA-GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( family-2498 ) : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGNGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-C--TCTN----GAGAAGGAACAAT-AAT-AAAA-GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
gi|1 : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACACACACA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTG-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAAT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGA-AT--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATCAT----AAGT----GTT-----CCTT-C--TCTT----GAGAAGGAACAAT-AAT-AAAA-AATTGAAGGCTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC-ATATAAGAGTG--TTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTTCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-CATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|10 : AAG-AAT-AAAA-GTTTGAAGGCTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G----ATATATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCA-ATTTCCAAGCATT-A-TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATACATCAA-AATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTA
gi|11 : actttttattgtttatatcatagttCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGAAAA--GATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGGCTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCAtgc
gi|12 : aagattttgcctagcaaaaggttccttctagcacatGTAA---GCCCACCAT----TAGT----TTT-----TGTT-TATTCTA----TAGTA-----AAT-AAC-AAAA-ATCTGCAAGCTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC-ATCCAAAA--G----ATTTTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCA-ATTTCCAAGCAT--A-TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATATATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCAT
gi|12 : ggaTAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|13 : ggagtaagcccaccattagtttttgtttattctatagtaaataacaaaaatctgcaagcttgtcattcatagagagaccaaaacaaaaaaaatgaaacttatattttattgtttgtcaatctctgcactatcaaactatgatgagaaaagtagttggcatgtgtcatccaaaagatttttctaattcgtgcgtacactgttgacaaagtgaaagtagacttcccaaaatgatgtattcaatcccccaatttccaagcatattttttttctaaatgcacaatccaaacatgacaatgctttcaaaacgttcaaaatatatcaataataccattcaaaaattgagcattggatacggcggaaaatgcaTGTA---TGCCCACCATTG--AATTTT--GTT-----CTTT-T--TCT-------------ACAGT-AAA-AAAT-GTC---ATGTTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC-ATATAAGA--G--CTTTTTTTCT--------T-TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCA-AT--ACAAAAGT--GTTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATACATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGC----------------ATGGTGGTACTAtgcct
gi|14 : CACCAT----A--T----ATTTCCAGCCTT-T--TCTATGTAGTGAACGAACTAT-----------TTTAAGAACTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT-AGCTA--------TTTCTTTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAA-ATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCTTT-AAAATGTTCCA-AACACATCAAT-AT---------------------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTACCAGTttcc
gi|15 : tgtaagAGT-AATTAAAATGTTTGCATGGTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC-A-----GA-------TTTTTACTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCA-TTTCCCGAGCATC-ATTTTTT--T----CTGAATGCA-------AACCTGACAATGCTTTCAAAATTTTCAA-AATAGATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT--------------TG----TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTA
gi|16 : ttgttgttagttctttattattttAAT-AGT-AAAA-GTTTAAAGGCTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC-ATATAAGtgtc
gi|16 : tttataggtctatagtaAAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA--ATC-TTTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AATCGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACtaaactttcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|17 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGCg
gi|18 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCA-ATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAATA-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGAT-------------------TATGCAAC--------------ATTTAC-T-ATTTCCAATGGTGGTACTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTA--A-AATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACCAT----AAAT----GTT-----CCTT-C--TCTT----GAGAAGGAACAAT-AAtgcc
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA--------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGGTTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGA-AA--TTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACCAT----AAGT----GTA-----CCAT-C--TCTC----GAGAAGGAACAATCAAT-
gi|20 : caacaagattttgcctagcaaaaggttccttctagcgcatAAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAGATTAAc
gi|21 : CTAGTCCTCTG-CATATTACGA-AA--TTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCCaacaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|22 : gTTCAA-AATACACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-----AACAAGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAg
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCAT------------------------TTCC-T-GTTTCCAATGGCGGTACatgctat
gi|24 : TGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA----GACAA--TTTT-AGTG---ACCATAGTAaatgcct
gi|26 : --T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAGATCAACACTATCATTGAAA
gi|27 : TTTATTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACc
gi|3 : gacaCCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACACACATACA----------TTTTACACATATGCATTTACGGAACGCAAGAAAA-AGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATCAT----AAGT----GTT-----CATT-C--TCTT----GAGAAGTAACAAT-AA
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACACACACACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCA----------------------TTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTTGCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGT----ATTATCTGCTCAGTCAAGTGTAAATTGTCCATAAT----GAAT----Gat
gi|5 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACACACACA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTTCCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|6 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|7 : caagattttgcctagcaaaaggttccttctagcgcatTGTAAAC---CCACCAT----TGATTTTTGTT-----CTTTAT--TCTA----TAGTA-----AAT-AAT-AAAA-GTTTGAAGGCTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATTTTCCTATATAAGA--GA-TTTTTTTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTA
gi|8 : CCACCATTGATAATT----GTT-----CTTTAT--TCTA----TAGTA-----AAT-AAT-AAAA-GTTTGAAGGCTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--GATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATT-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATG---TTACTCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAtgcc
gi|9 : tgttatcT----GTT-----CTTTAT--TCTT----TAGTA-----AAA-AGT-TAAA-GTCTGAAGGCATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--ATTTTTTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAA-ATTTCCAAGCATA-AATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AATA-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA
Alignments
lowQualScore : 666666666666 1 11111 111111111111 11111 1111 22222 11 222222 1111
lowQualScore : 111111111111 5 1 2 5 1 0 66 5 22222 5 5 5 0 5 77 1 6 4 555555555555 00000 1 4444 99 2 55555 3 3 4 4 1 11 4 444444 0 3 3 3 1111 44 44 0 0 2 5 1 0 3 77 1 0 0 555 3 2 6666 0 0 0 44 3 55
lowQualScore : ............ . . . . . . .. . ..... . . . . . .. . . . ............ ..... . .... .. . ..... . . . . . .. . ...... . . . . .... .. .. . . . . . . . .. . . . ... . . .... . . . .. . ..
lowQualScore : 444444444444 0 3 3 0 4 7 99 0 55555 7 7 7 7 7 99 7 6 1 111111111111 00000 4 5555 99 4 11111 1 6 0 0 1 00 0 111111 4 3 3 6 5555 66 66 8 2 9 4 4 3 3 99 2 3 3 444 3 2 2222 8 3 8 33 1 33
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGNAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( family-2498 ) : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNGAGNAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
gi|1 : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACACACACA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTG-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAAT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGA-AT--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATCAT----AAGT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAT-AAAA-AATTGAAGG-CTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC-ATATAAGAGTG--TTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTTCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-CATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|10 : AAG-AAT-AAAA-GTTTGAAGG-CTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G----ATATATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCA-ATTTCCAAGCATT-A-TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATACATCAA-AATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTA
gi|11 : actttttattgtttatatcatagttCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGAAAA--GATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGGCTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCAtgc
gi|12 : aagattttgcctagcaaaaggttccttctagcacatGTAA---GCCCACCAT----TAGT----TTT-----TGTT-TATTCTATAGTA------AAT-AAC-AAAA-ATCTGCAAG-CTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC-ATCCAAAA--G----ATTTTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCA-ATTTCCAAGCAT--A-TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATATATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCAT
gi|12 : ggaTAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|13 : ggagtaagcccaccattagtttttgtttattctatagtaaataacaaaaatctgcaagcttgtcattcatagagagaccaaaacaaaaaaaatgaaacttatattttattgtttgtcaatctctgcactatcaaactatgatgagaaaagtagttggcatgtgtcatccaaaagatttttctaattcgtgcgtacactgttgacaaagtgaaagtagacttcccaaaatgatgtattcaatcccccaatttccaagcatattttttttctaaatgcacaatccaaacatgacaatgctttcaaaacgttcaaaatatatcaataataccattcaaaaattgagcattggatacggcggaaaatgcaTGTA---TGCCCACCATTG--AATTTT--GTT-----CTTT-T--TCT----------ACAGT-AAA-AAAT-GTC---ATG-TTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC-ATATAAGA--G--CTTTTTTTCT--------T-TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCA-AT--ACAAAAGT--GTTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATACATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGC----------------ATGGTGGTACTAtgcct
gi|14 : CACCAT----A--T----ATTTCCAGCCTT-T--TCTAT-GTAGTGAACGA--ACT-A-----TTTTAAGAACTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT-AGCTA--------TTTCTTTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAA-ATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCTTT-AAAATGTTCCA-AACACATCAAT-AT---------------------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTACCAGTttcc
gi|15 : tgtaagAGT-AATTAAAATGTTTGCATG-GTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC-A-----GA-------TTTTTACTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCA-TTTCCCGAGCATC-ATTTTTT--T----CTGAATGCA-------AACCTGACAATGCTTTCAAAATTTTCAA-AATAGATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT--------------TG----TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTA
gi|16 : ttgttgttagttctttattattttAAT-AGT-AAAA-GTTTAAAGG-CTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC-ATATAAGtgtc
gi|16 : tttataggtctatagtaAAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA--ATC-TTTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AATCGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACtaaactttcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|17 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGCg
gi|18 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCA-ATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAATA-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGAT-------------------TATGCAAC--------------ATTTAC-T-ATTTCCAATGGTGGTACTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTA--A-AATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACCAT----AAAT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAtgcc
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA--------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGGTTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGA-AA--TTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACCAT----AAGT----GTA-----CCAT-C--TCTCGAGAAG-GAACAATCAAT-
gi|20 : caacaagattttgcctagcaaaaggttccttctagcgcatAAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAGATTAAc
gi|21 : CTAGTCCTCTG-CATATTACGA-AA--TTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCCaacaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|22 : gTTCAA-AATACACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-----AACAAGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAg
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCAT------------------------TTCC-T-GTTTCCAATGGCGGTACatgctat
gi|24 : TGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA----GACAA--TTTT-AGTG---ACCATAGTAaatgcct
gi|26 : --T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAGATCAACACTATCATTGAAA
gi|27 : TTTATTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACc
gi|3 : gacaCCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACACACATACA----------TTTTACACATATGCATTTACGGAACGCAAGAAAA-AGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATCAT----AAGT----GTT-----CATT-C--TCTTGAGAAG-TAACAAT-AA
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACACACACACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCA----------------------TTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTTGCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGT----ATTATCTGCTCAGTCAAGTGTAAATTGTCCATAAT----GAAT----Gat
gi|5 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACACACACA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTTCCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|6 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|7 : caagattttgcctagcaaaaggttccttctagcgcatTGTAAAC---CCACCAT----TGATTTTTGTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATTTTCCTATATAAGA--GA-TTTTTTTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTA
gi|8 : CCACCATTGATAATT----GTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--GATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATT-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATG---TTACTCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAtgcc
gi|9 : tgttatcT----GTT-----CTTTAT--TCTTTAGTA------AAA-AGT-TAAA-GTCTGAAGG-CATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--ATTTTTTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAA-ATTTCCAAGCATA-AATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AATA-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA
Alignments
lowQualScore : 666666666666 1 11111 111111111111 11111 1111 333333 11 222222 1111
lowQualScore : 111111111111 5 1 2 5 1 0 66 5 22222 5 5 5 0 5 77 1 6 4 555555555555 00000 1 4444 66 2 111111 3 3 4 4 1 11 4 444444 0 3 3 3 1111 44 44 0 0 2 5 1 0 3 77 1 0 0 555 3 2 6666 0 0 0 44 3 55
lowQualScore : ............ . . . . . . .. . ..... . . . . . .. . . . ............ ..... . .... .. . ...... . . . . . .. . ...... . . . . .... .. .. . . . . . . . .. . . . ... . . .... . . . .. . ..
lowQualScore : 444444444444 0 3 3 0 4 7 99 0 55555 7 7 7 7 7 99 7 6 1 111111111111 00000 4 0000 55 3 999999 1 6 0 0 1 00 0 111111 4 3 3 6 5555 66 66 8 2 9 4 4 3 3 99 2 3 3 444 3 2 2222 8 3 8 33 1 33
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGTAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( family-2498 ) : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGNAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
gi|1 : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACACACACA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTG-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAAT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGA-AT--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATCAT----AAGT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAT-AAAA-AATTGAAGG-CTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC-ATATAAGAGTG--TTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTTCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-CATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|10 : AAG-AAT-AAAA-GTTTGAAGG-CTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G----ATATATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCA-ATTTCCAAGCATT-A-TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATACATCAA-AATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTA
gi|11 : actttttattgtttatatcatagttCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGAAAA--GATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGGCTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCAtgc
gi|12 : aagattttgcctagcaaaaggttccttctagcacatGTAA---GCCCACCAT----TAGT----TTT-----TGTT-TATTCTATAGTA------AAT-AAC-AAAA-ATCTGCAAG-CTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC-ATCCAAAA--G----ATTTTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCA-ATTTCCAAGCAT--A-TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATATATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCAT
gi|12 : ggaTAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|13 : ggagtaagcccaccattagtttttgtttattctatagtaaataacaaaaatctgcaagcttgtcattcatagagagaccaaaacaaaaaaaatgaaacttatattttattgtttgtcaatctctgcactatcaaactatgatgagaaaagtagttggcatgtgtcatccaaaagatttttctaattcgtgcgtacactgttgacaaagtgaaagtagacttcccaaaatgatgtattcaatcccccaatttccaagcatattttttttctaaatgcacaatccaaacatgacaatgctttcaaaacgttcaaaatatatcaataataccattcaaaaattgagcattggatacggcggaaaatgcaTGTA---TGCCCACCATTG--AATTTT--GTT-----CTTT-T--TCT----------ACAGT-AAA-AAAT-GTC---ATG-TTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC-ATATAAGA--G--CTTTTTTTCT--------T-TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCA-AT--ACAAAAGT--GTTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATACATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGC----------------ATGGTGGTACTAtgcct
gi|14 : CACCAT----A--T----ATTTCCAGCCTT-T--TCTAT-GTAGTGAACGA--ACT-A-----TTTTAAGAACTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT-AGCTA--------TTTCTTTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAA-ATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCTTT-AAAATGTTCCA-AACACATCAAT-AT---------------------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTACCAGTttcc
gi|15 : tgtaagAGT-AATTAAAATGTTTGCATG-GTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC-A-----GA-------TTTTTACTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCA-TTTCCCGAGCATC-ATTTTTT--T----CTGAATGCA-------AACCTGACAATGCTTTCAAAATTTTCAA-AATAGATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT--------------TG----TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTA
gi|16 : ttgttgttagttctttattatttt--TCTATAGTA------AAT-AGT-AAAA-GTTTAAAGG-CTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC-ATATAAGtgtc
gi|16 : tttataggAAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA--ATC-TTTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AATCGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACtaaactttcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|17 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGCg
gi|18 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCA-ATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAATA-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGAT-------------------TATGCAAC--------------ATTTAC-T-ATTTCCAATGGTGGTACTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTA--A-AATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACCAT----AAAT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAtgcc
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA--------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGGTTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGA-AA--TTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACCAT----AAGT----GTA-----CCAT-C--TCTCGAGAAG-GAACAATCAAT-
gi|20 : caacaagattttgcctagcaaaaggttccttctagcgcatAAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAGATTAAc
gi|21 : CTAGTCCTCTG-CATATTACGA-AA--TTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCCaacaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|22 : gTTCAA-AATACACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-----AACAAGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAg
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCAT------------------------TTCC-T-GTTTCCAATGGCGGTACatgctat
gi|24 : TGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA----GACAA--TTTT-AGTG---ACCATAGTAaatgcct
gi|26 : --T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAGATCAACACTATCATTGAAA
gi|27 : TTTATTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACc
gi|3 : gacaCCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACACACATACA----------TTTTACACATATGCATTTACGGAACGCAAGAAAA-AGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATCAT----AAGT----GTT-----CATT-C--TCTTGAGAAG-TAACAAT-AA
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACACACACACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCA----------------------TTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTTGCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGT----ATTATCTGCTCAGTCAAGTGTAAATTGTCCATAAT----GAAT----Gat
gi|5 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACACACACA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTTCCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|6 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|7 : caagattttgcctagcaaaaggttccttctagcgcatTGTAAAC---CCACCAT----TGATTTTTGTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATTTTCCTATATAAGA--GA-TTTTTTTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTA
gi|8 : CCACCATTGATAATT----GTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--GATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATT-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATG---TTACTCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAtgcc
gi|9 : tgttatcT----GTT-----CTTTAT--TCTTTAGTA------AAA-AGT-TAAA-GTCTGAAGG-CATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--ATTTTTTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAA-ATTTCCAAGCATA-AATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AATA-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA
Alignments
lowQualScore : 666666666666 1 11111 111111111111 11111 1111 333333 11 222222 1111
lowQualScore : 111111111111 5 1 2 5 1 0 66 5 22222 5 5 5 0 5 77 1 6 4 555555555555 00000 1 4444 66 2 111111 3 3 4 4 1 11 4 444444 0 3 3 3 1111 44 44 0 0 2 5 1 0 3 77 1 0 0 555 3 2 6666 0 0 0 44 3 55
lowQualScore : ............ . . . . . . .. . ..... . . . . . .. . . . ............ ..... . .... .. . ...... . . . . . .. . ...... . . . . .... .. .. . . . . . . . .. . . . ... . . .... . . . .. . ..
lowQualScore : 444444444444 0 3 3 0 4 7 99 0 55555 7 7 7 7 7 99 7 6 1 111111111111 00000 4 0000 55 6 999999 1 6 0 0 1 00 0 111111 4 3 3 6 5555 66 66 8 2 9 4 4 3 3 99 2 3 3 444 3 2 2222 8 3 8 33 1 33
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGTAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( family-2498 ) : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGTAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
gi|1 : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACACACACA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTG-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAAT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGA-AT--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATCAT----AAGT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAT-AAAA-AATTGAAGG-CTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC-ATATAAGAGTG--TTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTTCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-CATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|10 : AAG-AAT-AAAA-GTTTGAAGG-CTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G----ATATATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCA-ATTTCCAAGCATT-A-TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATACATCAA-AATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTA
gi|11 : actttttattgtttatatcatagttCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGAAAA--GATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGGCTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCAtgc
gi|12 : aagattttgcctagcaaaaggttccttctagcacatGTAA---GCCCACCAT----TAGT----TTT-----TGTT-TATTCTATAGTA------AAT-AAC-AAAA-ATCTGCAAG-CTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC-ATCCAAAA--G----ATTTTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCA-ATTTCCAAGCAT--A-TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATATATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCAT
gi|12 : ggaTAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|13 : ggagtaagcccaccattagtttttgtttattctatagtaaataacaaaaatctgcaagcttgtcattcatagagagaccaaaacaaaaaaaatgaaacttatattttattgtttgtcaatctctgcactatcaaactatgatgagaaaagtagttggcatgtgtcatccaaaagatttttctaattcgtgcgtacactgttgacaaagtgaaagtagacttcccaaaatgatgtattcaatcccccaatttccaagcatattttttttctaaatgcacaatccaaacatgacaatgctttcaaaacgttcaaaatatatcaataataccattcaaaaattgagcattggatacggcggaaaatgcaTGTA---TGCCCACCATTG--AATTTT--GTT-----CTTT-T--TCT----------ACAGT-AAA-AAAT-GTC---ATG-TTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC-ATATAAGA--G--CTTTTTTTCT--------T-TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCA-AT--ACAAAAGT--GTTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATACATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGC----------------ATGGTGGTACTAtgcct
gi|14 : CACCAT----A--T----ATTTCCAGCCTT-T--TCTAT-GTAGTGAACGA--ACT-A-----TTTTAAGAACTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT-AGCTA--------TTTCTTTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAA-ATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCTTT-AAAATGTTCCA-AACACATCAAT-AT---------------------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTACCAGTttcc
gi|15 : tgtaagAGT-AATTAAAATGTTTGCATG-GTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC-A-----GA-------TTTTTACTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCA-TTTCCCGAGCATC-ATTTTTT--T----CTGAATGCA-------AACCTGACAATGCTTTCAAAATTTTCAA-AATAGATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT--------------TG----TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTA
gi|16 : ttgttgttagttctttattatttt--TCTATAGTA------AAT-AGT-AAAA-GTTTAAAGG-CTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC-ATATAAGtgtc
gi|16 : tttataggAAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA--ATC-TTTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AATCGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACtaaactttcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|17 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGCg
gi|18 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCA-ATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAATA-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGAT-------------------TATGCAAC--------------ATTTAC-T-ATTTCCAATGGTGGTACTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTA--A-AATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACCAT----AAAT----GTT-----CCTT-C--TCTTGAGAAG-GAACAAT-AAtgcc
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA--------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGGTTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGA-AA--TTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACCAT----AAGT----GTA-----CCAT-C--TCTCGAGAAG-GAACAATCAAT-
gi|20 : caacaagattttgcctagcaaaaggttccttctagcgcatAAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAGATTAAc
gi|21 : CTAGTCCTCTG-CATATTACGA-AA--TTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCCaacaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|22 : gTTCAA-AATACACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-----AACAAGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAg
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCAT------------------------TTCC-T-GTTTCCAATGGCGGTACatgctat
gi|24 : TGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA----GACAA--TTTT-AGTG---ACCATAGTAaatgcct
gi|26 : --T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAGATCAACACTATCATTGAAA
gi|27 : TTTATTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACc
gi|3 : gacaCCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACACACATACA----------TTTTACACATATGCATTTACGGAACGCAAGAAAA-AGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATCAT----AAGT----GTT-----CATT-C--TCTTGAGAAG-TAACAAT-AA
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACACACACACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCA----------------------TTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTTGCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGT----ATTATCTGCTCAGTCAAGTGTAAATTGTCCATAAT----GAAT----Gat
gi|5 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACACACACA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTTCCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|6 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|7 : caagattttgcctagcaaaaggttccttctagcgcatTGTAAAC---CCACCAT----TGATTTTTGTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATTTTCCTATATAAGA--GA-TTTTTTTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTA
gi|8 : CCACCATTGATAATT----GTT-----CTTTAT--TCTATAGTA------AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--GATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATT-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATG---TTACTCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAtgcc
gi|9 : tgttatcT----GTT-----CTTTAT--TCTTTAGTA------AAA-AGT-TAAA-GTCTGAAGG-CATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--ATTTTTTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAA-ATTTCCAAGCATA-AATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AATA-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtgcc
blockSeqs : CACACACACACA A T G A C GG C TTCAC A A T C TT A A T TGAATTTT TCCAG G TAT AT T GTGAAC C T T A T TT T GATT C A C CAAT AA AC T C T G CA T CGG A G CATC CA T GT
blockSeqs : NNNNNNNNNN A G G A C . . . . . . . . G T C TGATTTTT . T AT AT T GGAAC . . . . A TA . GAT . . . CAT . . . T T . G T . . A A CC . T
blockSeqs : CACA A T A A . . . . . . . . . A G T TGATAATT . C AT AT T GGAAC . . . . A . . GC . . . CTT . . . C T . . A . . G A CC . G
blockSeqs : CA A G A A . . . . . . . . . G G A TAGT . C AT TG A GTAAC . . . . A . . GA . . . CAT . . . C T . . T . . A A TA . T
blockSeqs : CA . T A . . . . . . . . . . G T T AAAT . C T CG A AC . . . . A . . G . . . TAT . . . G C . . G . . T G AC . G
blockSeqs : . . . A . . . . . . . . . . . . C AAGT . A T TG A . . . . . A . . G . . . AAA . . . G T . . T . . A G CC . A
blockSeqs : . . . . AAGT . T C AT T . . . . . A . . T . . . TA . . . G C . . T . . A A CA . G
blockSeqs : . GAAT . T C AT T . . . . . T . . . . . . GT . . . C C . . T . . A A CC . G
blockSeqs : AT . T C TT T . . . . . . . . . . . A . . . G T . . T . . G A CC . T
blockSeqs : . . . . . . . . . . . . C T . . . . . G A . . T
blockSeqs : . . . . . . C C . . . . . A . . . T
blockSeqs : . . . . . . . . .
blockSeqs : . .
blockSeqCons : CACA******** AC**** GA****
originalCons : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGTAG-GAACAAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGA--G--TTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
finalCons : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--TCTNTAGTAAC----AAT-AAT-AAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-ATATAAGAGA----TTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA
Alignments
lowQualScore : 666666666666 1 11111 111111111111 1111 11111 2222 11 1111
lowQualScore : 111111111111 5 1 2 5 1 0 66 5 22222 5 5 5 0 5 77 1 6 4 444444444444 99999 1 5555 3 55555 3 5555 8 4 1 11 4 55 3 55 1 88 0 3 3 3 1111 44 44 0 0 2 5 1 0 3 77 1 0 0 555 3 2 6666 0 0 0 44 3 55
lowQualScore : ............ . . . . . . .. . ..... . . . . . .. . . . ............ ..... . .... . ..... . .... . . . .. . .. . .. . .. . . . . .... .. .. . . . . . . . .. . . . ... . . .... . . . .. . ..
lowQualScore : 444444444444 0 3 3 0 4 7 99 0 55555 7 7 7 7 7 99 7 6 1 111111111111 11111 8 6666 3 55555 1 6666 0 0 1 00 0 55 6 00 3 66 4 3 3 6 5555 66 66 8 2 9 4 4 3 3 99 2 3 3 444 3 2 2222 8 3 8 33 1 33
consensus : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--T-CTNT---AGT-AA-AATAATAAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-A--TATAAG-A--GATTTT--TTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
Reference ( family-2498 ) : CCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAANTGTCCACCAT----AAGT----GTT-----CCTT-T--T-CTNT---AGT-AACAATAATAAAA-GTTTGAAGG-CTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-A--TATAAG-A--GATTTT--TTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTTTCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCGCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTCCAATGGTGGTACTA
gi|1 : CCCTTGATGTTTTCGTCACGTGATTAACACATATGAGCACCTGCATATTTATACACACACA------------TTTTACACATATGCATTTACGGGACGCAAGATAAAATATATAGACAGGTCAAAATATATGAAAGGAAGCATTTACAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTG-TTATTTGGCGGGAGGCTATGCATATTCATTATATTAATCTCCATTCTATATTATCAAATATTCGATGCAGGGGTTAATGCTCTATGCGAATAACTGTTCCTTGTCGGTCTGCTGTTAAAAAAT-GCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACACTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTTGTCCTCTG-CGTACTACGA-AT--TTTTGAATGGGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGGGCCCTACTGTTTGGCATGCCTTTGACAGTACCCATGCATCCATTACCTGCTCAGTCAAGTGTGAAATGTCCATCAT----AAGT----GTT-----CCTT-C--T-CTTGAGAAGG-AACAATAATAAAA-AATTGAAGG-CTTGTCATTCACAGAGAAACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATTAT--GAGAAAAGTAGGGGTCATGCGTC-A--TATAAG-AGTGTTTTT--TTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATACCCCA-ATTTTCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AAT-CATCAAAAATGCCATTCAAAT-AAAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAATTAGGATTATTTAT-A--ACCGCCATTATACGACTACCAAACGGAAGCACTTCC-T-TTTTGCAATAGTGGTACTA
gi|10 : T---AGT---TAAGAATAAAA-GTTTGAAGG-CTTGCCATTCATAGAGAATCCCAAAGGAAAGAAATGAAACCTACAATTTACTGTTTGTCAACCTCCGCACTATCAAAATATGTT--GAGAAAAGTAGGGGTCATGTGTC-A--TATAAG-A--GA--TA--TATCTGCTCAGTGTGTACACTGTTGAAAAAGTGAAAGTAGACTT-CCGAAATCATGTATTC-ATATCCCA-ATTTCCAAGCATT-A-TTTAT--T--TTCTAAATTCACAATGAAAACATGACAATGCTATCAAAATGTGCAA-AATACATCAA-AATGCCATTCAAAT-ATAA--A---GAGCATTAAAATA---AGAAAAATGCATTTTTAAAGAAG-ACAAAAAGATGATTATTTGT-A--ACCGCCATTATGCAACTACCCAACGGAAGCACGTCCTT-TTTTCCAATGGTGCTACTA
gi|11 : actttttattgtttatatcaCCCCGGATGTTTTCGTCACGTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTACACATATGCATTTACGGAACGCAAGAAAA--GATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTAGCACGTGACAAGCAACTATTTCGTTACGTGGCTATTTAGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATCATCAAATATATAATGCAGGGGTT-ATACTCTATACGAATAATTATTCATTGTCGGTCTGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGC-CAGGAATATACTTTGGCAtgc
gi|12 : aagattttgcctagcaaaaggttccttctagcacatGTAA---GCCCACCAT----TAGT----TTT-----TGTT-TATT-CTAT---AGT-AA--ATAACAAAA-ATCTGCAAG-CTTGTCATTCATAGAGAGACCAAAACAAAAAAAATGAAACTTATATTTTATTGTTTGTCAATCTCTGCACTATCAAACTATGAT--GAGAAAAGTAGTTGGCATGTGTC-A--TCCAAA-A--GA--TT--TTTCTAATTCGTGCGTACACTGTTGACAAAGTGAAAGTAGACTTCCCAAAATGATGTATTCAATCCCCCA-ATTTCCAAGCAT--A-TTTTT--T--TTCTAAATGCACAATCCAAACATGACAATGCTTTCAAAACGTTCAA-AATATATCAATAATACCATTC------AAA--AATTGAGCATT-GGATACGGCGGAAAATGCAT
gi|12 : ggaTAT-A--ACCGCCATTATACGACTAGCCCACGGAAGCATTTCC-T-GTTCCCAATGGTGGTGCTAataaccgccattatacgactagcccacggaagcatttcctgttcccaatggtggtgctatgcct
gi|13 : ggagtaagcccaccattagtttttgtttattctatagtaaataacaaaaatctgcaagcttgtcattcatagagagaccaaaacaaaaaaaatgaaacttatattttattgtttgtcaatctctgcactatcaaactatgatgagaaaagtagttggcatgtgtcatccaaaagatttttctaattcgtgcgtacactgttgacaaagtgaaagtagacttcccaaaatgatgtattcaatcccccaatttccaagcatattttttttctaaatgcacaatccaaacatgacaatgctttcaaaacgttcaaaatatatcaataataccattcaaaaattgagcattggatacggcggaaaatgcaTGTA---TGCCCACCATTG--AATTTT--GTT-----CTTT-T--T-CTAC---AGT-AA-------AAAATGTC---ATG-TTTGTCATTCATAGAAAGACCTGAATGAAAG---TCAAACTTACATTTTATTGTCTGTCAAGCACTGTACTACCAAAATATGAT--GAGAAAAGTAGGGGTAATGTAGC-A--TATAAG-A--GCTTTT--TTTCT--------T-TACACTGTTGACAAAACGACAGTAGATTT-CATAAATCATTTATTC-ATACACCA-AT--ACAAAAGT--GTTTTTT--T--TTGTAAATTCACAAATTAAACATGACAATGCTTTCAAAATGTTCGA-AATACATCAATAATGCCATTCAAAT-AAAA--AAG-GAGCATTAAA--A---AAGAAAATGCA-CTTTAAAGACG-AAGAAACAAGGGTTACCTAT-A--ATTGCCATTATGTGACTACCCCACGGAAGC----------------ATGGTGGTACTAtgcct
gi|14 : CACCAT----A--T----ATTTCCAGCCTT-T--T-CTATGT-AGTGAACGA-ACTA-----TTTTAAGAACTTGTAATCCAAAGAAAGAACCAAATCACAGAAAGGAAGCTTACATTTAATTGTTTGTTGATATCCTCATTTCCAACATATTATTTGAAAAAAAAACTGGTCATGTTTT-AGCTAT---------TTCT--TTTCTGTTCAGTGCGTTCACTGTTGGTGAAGTGAACACAGACGT-CATAAATAATGTATTC-ATATTTAA-ATTACCAAGCATCAATGTTTTAAT--TTCTAAATTCACAATTCAAATATGACAATGCTTT-AAAATGTTCCA-AACACATCAAT-AT---------------------TGAG--------TA---AGAAAAATGCATTTCTAAGTAAG-AAGAAACGAGAATTATTTATCATCACCGCCATTATGCGACTCGCTAACGGATGTATATTC-T-TTTACCAGTttcc
gi|15 : tgtaag----GTT-----CTTTAT--TATTTT---AGT-AAT-----TAAAATGTTTGCATG-GTTGTCTTTCATAGAGAAATCCAAATGAAAGAATTTAG--TT---TTTTATTGTTTGTCAACCACTGTACTACCAAAATATAAT--GAGA-----------CATGTGTC-A------------GATTTT--TA-CTGTTCGGTGTGTACACTGCTAAGAAAGTGAAATTAGTCGT-TTGAAATCATGTATTC-ATACCCCA-TTTCCCGAGCATC-ATTTTTT--T----CTGAATGCA-------AACCTGACAATGCTTTCAAAATTTTCAA-AATAGATCAATAATGCCATTCAAATGAAAA--AAAAGAGCATTAAACTA---A-GAAATTGCATTTTTAAAGAAG-AAGAAACAAGGATTATTTAT--------------TG----TATCACACGGAAGCATTTCC-T-GTCTCCAATGGTGAAACTA
gi|16 : ttgttgtta--T-CTAT---AGT-AA--ATAGTAAAA-GTTTAAAGG-CTTGTCATTCATAGAGAGACCCAAATAAAAGAAGTGAAACTTACACATTCTTGTTTGCCAACCTCTGCTCTACCAAAATATGATTAAAAAAAAGTAGGGGTCATGTGTC-A--TATAAGTA--AACTTT--tgtc
gi|16 : tttataggAAGTAAACTT-TCAAAATATTGTATTC-ATACCCCCCATCTCAAA--ATC-TTTTTTT--TACTTCTAAATTCACAATTCAAAAATGACAATGCTTCTTAAATGTTCCA-AATCGATGAACAATGCCACCCAAAC-CAAA--AAATG----T------------GAAAATGCATTTTTACAGAAA-AAGAAATTAGGATTATTTAT-G--GCAGCCATTATGCGACTACCCCATGGAAGCACTTCC-TGTTTTGCAATGGTGGTACcaaaatattgtattcataccccccatctcaaaatcttttttttacttctaaattcacaattcaaaaatgacaatgcttcttaaatgttccaaatcgatgaacaatgccacccaaaccaaaaaatgtgaaaatgcatttttacagaaaaagaaattaggattatttatggcagccattatgcgactaccccatggaagcacttcctgttttgcaatggtggtacg
gi|17 : tttataggtctatagtaaatagtaaaagtttaaaggcttgtcattcatagagagacccaaataaaagaagtgaaacttacacattcttgtttgccaacctctgctctaccaaaatatgattaaaaaaaagtaggggtcatgtgtcatatCCCCGGATGTTTTTGTCACGTGATTAACACATACGAGCg
gi|18 : tagtaacttaatgtgcatttttttaaaaaaaaatatgttaatagatattttatcacgtgcattgatataactcaaccagttaatatttataattgtatcaaagttaacctagtgcttatgtagcatagggttgtgcccgttgcaaaggaacgtgatgtataataaattggacttttacactgtgcatgatcagttacagggaaaggtgtcacgaaaaatgctttttgtttacaaaagaactggccctacattttgggcgaatatgtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCTGTTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTT-CCGAAATCATGTGTTC-ATGCCCCA-ATTCCCA----------------T--ATCTAAATTCACAATTCAAACATGACAATGCTCTCAAAATGTTTAATAATA-ATCAATAATGCCATTCAAAT-AAAA--TAAGGAGCACTAAAATA---TGGAAAGTGATTTTTTAAATTAA-AAGAAACAAGGAT-------------------TATGCAAC--------------ATTTAC-T-ATTTCCAATGGTGGTACTA
gi|19 : ATG--AAT-ATGC-----ATGAGTCCAAA-AAAAGCGGTAGACTGGTCCTCTG-CGTACTA--A-AATTTTTTAAATAAGTACCATAATAGGACAGGGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGACATGCCTTTGACAGTACCCTTGTATCCATTATCTGCTCAGTCAAGTGTAAATTGTCCACCAT----AAAT----GTT-----CCTT-C--T-CTTG---AGA-AGGAACAATAAtgcc
gi|2 : CCCCGGGTGTTTTCGTCACGTGATTAACACATACGAGCACCTGCATATATATACACACACA--CA--------TTTTATACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTGCAGTATTTGCAAATATTGCACAGATATATTAGAAGATAAATTATCACGTGACAAGCGACTATTTCATTACGTGGTTAATTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGAGTTAATACTCTATAAAAATAATTATTCCTTGTCGGTCTGTTGTTAAAAACTTGCATTTTTACAATAGATTGA-TCTAAGGTGCATGAATATACATTGGCATAAAGATTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTAGACTGGTCCTCTG-CGTACTTCGA-AA--TTTTGAATGTGTACCATAATAGGACAGGGAACCAGATTAAGATGG-GGCGTCTTACTGTTCGGCATGCCTTTGACAGTGCCCTTGTATCCATTACCTGCTCAGTCAAGTGTAAACTGTCCACCAT----AAGT----GTA-----CCAT-C--T-CTCG---AGA-AGGAACAATCAA
gi|20 : caacaagattttgcctagcaaaaggttccttctagcgcatAAATTCACAATT-AATTATGAAAAGGCTTTCAAAATGTTCCA-AATAGATTAAtc
gi|21 : CTAGTCCTCTG-CATATTACGA-AA--TTTTAAATGGGTACCATAATAGGACAGGGAACCAGATTAAGACGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTCAAATGTAAATTGTCCaacaaacatcacaaccacagaataactgggttaatgccatttaattgctacttcttcgcggaagcaattattgtttcggatgggtatgtcatgcctttgat
gi|22 : gTTCAA-AATACACCAACAAAGCCTTTCAA-T-AAAACAAAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAAG-----AACAAGGATTATTTAT-G--AACGCCATAATGCGACTACTCAACGGAACCACATCC-T-GTTCCCAAg
gi|23 : ATTAAAATA---AGGAAACTGCATTTTTAAAGAAGAAAAAAACAAGGATTATTTAT-A--ACCGCCAT------------------------TTCC-T-GTTTCCAATGGCGGTACatgctat
gi|24 : TGTAATGGGAATCATGCTTCACATGAGTGTAGG-AAA-GCGGTAAACGTGTCCGCTGTCGTA----GACAA--TTTT-AGTG---ACCATAGTAaatgcct
gi|26 : --T--TTATACATTCATAATTAAAACATGAGAATGCTTCTGAAATGTTTCA-AATAGATCAACACTATCATTGAAA
gi|27 : G-A--CATTTA--TTTCTGTTCAAT-TGTTAACTGTCGGCAAATCGGAGAAAGATTT-TCAAAATCATGTTTTT-CTACc
gi|3 : CCCCGGATGTTCTCGTCACGTGCTTAACACATACGAGCACCTGCATATATATACACACATACA----------TTTTACACATATGCATTTACGGAACGCAAGAAAA-AGATCTAGACAGGTCAAAATATATGAACTTCAGCATTTGCCAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACATGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGATTAATACTCTATACAAATAATTGTTCCTTGTCGGTCTGCTGTTAAAAACTTGCATTTTTACAATATATTTACTTTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-GCGGTACACTGATCCTCTG-CGTACTACGA-AA--TTTTGAATGGGTACCCTAATAGGACAGGGAATCAGATTAAGATGGCGGCGCCTTACTGTTCGGTATTCCTTTGACAGTACCCTTGTATCCATTACCTGCTCAGTTTAATGAAAAATGTCCATCAT----AAGT----GTT-----CATT-C--T-CTTGAGAAGT-AACAATAA
gi|4 : tacaagattttgcctagcaaaaggtccttttagcggatCCCCGGATGTTTTCGTTACGTAATAAACACATCCGAGTACCTGCATATTTATACACACACACACACACACACATTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCA----------------------TTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATACATATTAATTATATTTATCTCTATTCTATATTATCAAATATTTAATGCAGGGGTTAATACTCTATGCGAATAATTGTTCCTTGTCGCTCTGCTGTTAAAAACTTGCATTTTT--AATAGATTGACTTTAAGGCGCATGAATATACATTGGCATAGAAGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAGAAAA-GCGGTAGACTGGTCCTCTG-CGTACTACGA-AA--TTTTGAATGTGTACCATAATAGGACAGAGAACCAGATTAAGATGGCGGCGCCCTACTGTTCGGCATGCCTTTGACAGTACCCTTGT----ATTATCTGCTCAGTCAAGTGTAAATTGTCCATAAT----GAAT----Gat
gi|5 : gtttttctcttaaaaatccataaaaagtgagtactctgaaagaagcgagccaggccctCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCGGAATATATATACACACACA------------TTTTACGCAT--GCATTTTCGGAACGCAAGAAAAAAGATCTAGACAGATCAAAATATATGAAAGGAAGCATTTGCAAACCTGAAAGGAAGCAATTGCAAATATTGCGCAGATATATTTGAAGTTAAATTATCACGTGACAAGCAACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATCAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCTTTGTTGGACTGCTGTTAAAAACTTCCATCTTTACAATAGATTGA-TCTAAGGCTCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAAG-AAA-ACG
gi|6 : caagattttgcctagcaaaaggttccttctagcgcatCCCCGGATGTTTTCGTCACGTGATTAACACATACGAGCACCTGCACACACACACACACACACACA--------TTTTACACATATGCATTTACGGAACGCAAGAAAAAAGATCTAGACAGGTCAAAATATATGAAAGGAAGCATTTGCAAACCTGAACTTCAGCATTTGCAAATATTGCACAGATATATTTGAAGCTAAATTATCACGTGACAAGCGACTATTTCATTACGTGATTATTTGGCGGGAGTCTATGCATATTCATTATATTAATCTCTATTCTATATTATAAAATATTCAATGCAGGGGTTAATACTCTATACGAATAATTGTTCCTTGTCGGTCGGCTGTT-AAAACTTGCATTTTTACAATAGATTGA-TCTAAGGCGCATGAATATACATTGGCATAGAGGCTATTTGTAATG--AAT-ATGC-----ATGAGTCCAA
gi|7 : caagattttgcctagcaaaaggttccttctagcgcatTGTAAAC---CCACCAT----TGATTTTTGTT-----CTTTAT--T-CTAT---AGT-AA--ATAATAAAA-GTTTGAAGG-CTTGTCATTCATTGAGAGACCCAAATTAAAGGAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATTTTCCTA--TATAAG-A--GATTTTT-TTTCTGCTTAGTGTGTACACAGGTGACACAATGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATC-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAA--AAATGAGCATTAAGATA---AGGAAAATGCATTTTTAAAGAAG-AAGAAACGAGGATTATTTAT-A--ACCCCCATTATGCGACTACCCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTA
gi|8 : CCACCATTGATAATT----GTT-----CTTTAT--T-CTAT---AGT-AA--ATAATAAAA-GTTTGAAGG-CTTGTCATTCATAGAAAATCCCAAATGAAAGAAGTGAAGCCTACATTTTACTGTTTGTCAACCTCTGCACTATCAAAATATGAT--GAGAAAAGTAGGGGTCATGTGTC-A--TATAAG-A--GATTTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTT-CTGAAATCATGTATTC-ATACCCCA-ATTTCCAAGCATT-ATTTTTT--T--TTCTAAATTCACAATTCAAACATGACAATGCTATCAAAATGTTCAA-AATACATCAATAATGCCATTCAAAT-AAAAG-AAATGAGCATTCGAATA---AGGAAAATGCATTTTTTAAGAAG-AAGAAATGAGGATTATTTAT-A--ACCGCCATCATG---TTACTCCACGGAAGCACTTCC-T-TTTTGCAATGGTGGTACTAtgcc
gi|9 : tgttatcT----GTT-----CTTTAT--T-CTTT---AGT-AA-AA-AGTTAAA-GTCTGAAGG-CATGTCATTCATAGAGAG--CCAAATGAAAGAAGTGAAACTTACATTTTACTGTATGTCAACCTCTGCACAACCAAAATAAGAT--GAGAAAAGTAGGGGTCATGTGTC-A--TATAAG-A--GATTTT--TTTCTGCTCAGTGTGTACACTGTTAACAAAGTGAAAATAGACTT-CCGAAATCATGTATTC-ATACCCAA-ATTTCCAAGCATA-AATTTAT--T--TTCTAAATTCACATTTCAAACATGACAATGCCTTCAAAATGTTCAA-AATA-ATCAACAATGCCATT-------AAA--AAATGAGCATTAAAATA---AGGAAAATGCATTTTTAAAGAA--AAGAAACAAGGATTATTTAT-A--ACCGCCATTATGCG--------ACGGAAGCACTTCC-T-TTTTCTAATGGTGGTACTtgcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGCATGTTCTTGTGCATCTTTTAGTAAAATTGAGGAGATGTTATTGACGAATGTAATATGAAATAGGTAAAACCTATA