lowQualScore : 1111111 111111111111111 111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 1 0000000 4444 1 22 1 1 2222 111111111111111 1 1 1 22 11 111 44444 22 11111 222222222222222222222222222222222222222222222222222222222222222222 1 1 555555555555555 1 55555555555555555555555 22 333333 1 1 1 00000000000000000000000000000000000 111111 222222 222222 2222222 333333333333333 111 111 111111 11 1 1 1 111 3333333333
lowQualScore : 5 6666666 2222 3 6 5 6 11 6 2 5 4 1111 222222222222222 7 6 0 7 5 1 1 6 5 22 3 3 6 1 44 9 6 777 11111 6 11 77777 111111111111111111111111111111111111111111111111111111111111111111 8 0 7 8 333333333333333 5 66666666666666666666666 99 6 3 9 00 3 111111 66 0 8 6 8 7 6 5 5 00000000000000000000000000000000000 9 444444 999999 1 8 3 0 4 4 8 4 333333 8888 2 3333333 88 5 4 6 2 999999999999999 6 1 222 111 4 99 88 3 999999 7 3 2 00 888 5 6 6 1 000 3333333333
lowQualScore : . ....... .... . . . . .. . . . . .... ............... . . . . . . . . . .. . . . . .. . . ... ..... . .. ..... .................................................................. . . . . ............... . ....................... .. . . . .. . ...... .. . . . . . . . . ................................... . ...... ...... . . . . . . . . ...... .... . ....... .. . . . . ............... . . ... ... . .. .. . ...... . . . .. ... . . . . ... ..........
lowQualScore : 0 0000000 5555 0 0 0 0 00 0 0 0 7 3333 777777777777777 3 0 7 3 0 0 0 0 0 00 7 7 0 0 00 7 0 777 00000 0 55 00000 222222222222222222222222222222222222222222222222222222222222222222 0 4 0 0 888888888888888 0 22222222222222222222222 22 0 2 3 00 2 555555 55 2 2 4 2 8 4 0 7 44444444444444444444444444444444444 6 444444 111111 6 0 1 1 0 0 0 0 333333 5555 6 0000000 55 6 4 0 2 111111111111111 0 3 222 000 0 55 88 6 999999 3 6 3 77 888 0 1 0 7 000 3333333333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTCTTAAAAAATGAAATAATTATTAAAATGGATAAAAAGAACCCATCTCATTNTCGTTAATAAATCAAATCCGNATGGTTTGGTACGGCAANTCCA-CAAAAC--G-CAA---T-GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTANTGNTTGACGTCATTCAGA-CTCTTTCTAAGATG-A-AANTNTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAAC-GGCNTA---CG------CCNC--CTC-CCC-CC-TA-AACTCCCACA-T-TT-ATTAAAATNCATTATATTTCTACTG-AAAA-CAT--GTGT-C--CCGTTCAGATTTTGTGTTG-C-----G-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACGGATC-AATTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTTT------AGTCTAACCT-----AGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAA-T-----AGATATCCTT-TTGGCAATACGGGGTCAGTGAGTA-------------TATATAGGCATGATATATT---GG---AA-A--AT-AT-G-T----TTT-AGC-CAATTTTAAAAANTTG---AAAAATCCTGACAAATTCCCCT---TTAA---TC---GTATACCTTAA
Reference ( gi|1 ) : TTTACGGCTATTTTGACGCTACTTACATGGGTTTGAGGTTCGGACAAAAATCCTGTCCCGAGGGATAATCGTTTTTGCTAGAACGACGCTCTGCCGAGTTCCCGCGAAAAGAGTTATCCCAAGGGACGGAGTATAAAAATAGTTATAAATGTGTTA-----TTAAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAACAAACAT-GATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCATTTAGG-CTTTTTCTAAAATG-A-AACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAAC-GACATA---C-------CCAT--ATC-CCC-CT-TA-AACTCCTGTA-T-TT-ATTAAAATTCATTTTATTTCTACTG-AAAA-CAT--TTGTTC--CCGTTCATATTTTGTGTTG-A-----G-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACGGATC-AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTTT------AGTCTAACCA-----AGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAA-A-----AGGTATATTT-TTGGCAACACGGGGTCAGTGAGTA-------------TTTATAGGTATGATATATT---GG---AA-A--AT-AT-G-T----TTT-AGC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCCCCT---TTAA---TC---ATATACTTTAAGTCGTATATTTCTTACGTTACGTCATCAATGAGTCT
gi|3 : AAATGTCTTAAAAAATGAAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGTG----AAAA--TATCAA---T---TAT-TAAATTGGAGTAGTAA-TTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGT-TTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TA--CT------AAACC-GGCGTA---C-------GCTC--CTT-CCC-CTCTA-AACTCTCATA-TGTT-ACCAAAATGCATTATATTTCTATTG-AAAA-TAT--GTTTGC--CAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATGGATC-AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTTT------AGTCTAACCT-----AGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTT-TCGGCAATACAGGGTCAGTGAGTA-------------TATATAGGCATGATATATT---GG---AA-AACAT-AT-A-T----TTT-AGC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-CTCT---TTAA---
gi|2 : tatatcaggacaacacaagAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAACGGGACAAA-ATCGATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCATTCAGA-CTCTTTCTAAGATG-A-AACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAAC-GGCTAA---CG------CCGC--CTC-CCCACC-CACAACTCCTACATT-TT-ATTAAAATGCATTATATTTCTACTG-AAAA-CG----TGTTTAACCATTCGGATTTTGTAGTG-C-----GCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCGGATC-AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATTT------AGTCTAAGCT-----AGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAA-T-----A--TATATCTGTTGACAATACAGTGTCAATGAGTT-------------GATATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G-----------------TTTTAAAAAATTG---AAAAATCCTGGCAAATTCCCTTTAGTTAA---TT---A-ATATTTTAAgt
gi|4 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggaaaaaacgctagaaatgtctttaTGGTTTACTATGGCAATTCCACCAAAACC-----------GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCATTCAGA-CTATTTCTGAGATG-A-AAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT-----AAAACCGACTTA---CGTTTCTTCC-----TC-CCC-AC-TA-AACT---AT--T-TT-ATTAAAAT-CATTATATTTCTACTG-AAAA--A------------CGATCAGATTTTGTGTGG-C-----G-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACAGATCTAATT-GAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTTC------AGTCTAACGT-----AGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAA-T-----ATATATCCTT-TTGGCAATAC-GGGTCGGTGAGTA-------------TATATGGGCAAGATATATTG--GG---AA-A--AT-ATAG-------TA-AACATAATTTTAAAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|6 : aataaatcaaccctgaaCTGTATCAATGGCGGATAAACGTACTCTTT---TAAAAC----------C-------CCAC--TTC-CCC---------------------T-AGTAAAGTTCACTATATTTCTACTGAAAAA-CGTGCTTG--C--CCGTTCAGATTTTGTGTTG-C-----A-TC------------GATC--T------AAATCCTGTATTCGCCCCTGTGTATAAC-------------AATCA---------CAC--GAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TA-TATAT------AGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTG--ATAGTGAAC-A-----AAATGTAgtctaaagag
gi|12 : TGGTGGAT---A-TACTCTTTAAA-AAAAC-AGCATAAGCC-------CCCTCCACCACTC-CT-TA-A-CTCCCACA-T-TTTATTGAACTTCACTATATTTCTACTG-AAAAACAT--GTGTGC--TCGTTCAGATTTTGTGCTG-T-----G-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCAGTACTGT
gi|5 : acAAA-CAT--GTG--C--GGGTTCAGAATTTGTGTTG-C-----A-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACG
gi|5 : TCACGTGACTCGTATAA---GTTGCAAAAGATGTTGCACTTT--------T--------A--------AGTTGGAAATCTATTTT------AGTCTAACCT-----AGGCACGTA---------------AT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAA-T-----AGATACCCTT-TTGGCATTACGAGGTCAGTGAGTA-------------TATATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTT----TTT-AGC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTCCTT---TCAtgactcgtataagttgcaaaagatgttgcacttttaagttggaaatctattttagtctaacctaggcacgtaatccctttttcaatatattattttggcatgtttaaatagatacccttttggcattacgaggtcagtgagtatatataggcatgctaaatttgaaaatatgtttttagccaattttaaaagtttgaaatatcctgataaatttcctttcagaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|10 : aaacatgtgcgggttcagaatttgtgttgcacctctctaaacttaaatccaggatccgcccctttgtaCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTTT------AGTCTAACCT-----AGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGA-T-----AGATACCTTT-TTGACAGTATGGGGTCAGAGAGTA-------------TATATGGGCATGATACATT---GGA--AA-A--AT-AT-GTT----TTT-AGC-CAATTGTAAAAAATTgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|11 : ACTTT--------T--------G--------A---------CTTTTCTCTCTGCAGTCTAACC-----------TG--------GTTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAA-A-----AGATACCCTT-ATGGctgatacatttactttaagacatgcacc
gi|9 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTTCT------AGTCTAACCT-----AGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAAT-T-----AGATATATGT-TTGGCAGTACGGGGTCAGTGatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|7 : tttaCGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAA-T-----AGATATCTTT-TCGGCAATA-GTGGTCAGTGAGTA-------------TATATAGTCATGATAAATT---GG---AA-A--ACAAT-G-T----TTT-AAA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-CCCT---TTAA---cgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
gi|8 : GCCAA-GTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAA-C-----AGATATTCTT-GTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-C----TTTAAGC-CTATTTT-GAAATTTA---AAAAATACTGAgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : agGGCATAATATATA---GG---AA-AT-AA-AT-G-T----TTTAAGC-CAATTTT-AAAAGTTG---AAAAATCCTGACAAATT-CCCT---TTAA---ACGGTGTATACCTtgtacttcctttgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|15 : tttattctagtctaacctaggcacgtagccaacataagaaaatcccttttcaatatatttttttggcatgtttaattagatatatgtttggcagtacggggtcagtgcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATATATT---GG---AATA--AA-AT-GGT----TTT-AGC-CAATTTTAAAAAATgatgcacattggttgcctttaacacc
gi|6 : ac---AA-A--AT-AT-A-TATAGTCT-AGC-CAATTTTAAACGTGTG---AAAAATCCTGATAA--TTCCCT---TTAAATGTC---ATATcctgatatgctacctttaaagtctta
gi|16 : ctgtatcaatggcggataaacgtactcttttaaaaccccacttcccctagtaaagttcactatatttctactgaaaaacgtgcttgcccgttcagattttgtgttgcatcgatctaaatcctgtattcgcccctgtgtataacaatcacacgaatcatttaaaatgtcacaaaatatgtagcactttaaaa-AT-G-T----TAT-GGC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCCC-----TTAA---tgatagtgaacaaaatgta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 2222 4444 222 888888888888888 1 1 11111 1111 1111 111111 222222222 333333 33333333333333333333 1111111 77777777777777777777777777777777777 11111 111111 2222222222222 111 111 11 11 1 33333
lowQualScore : 2 7 8888 4444 1 0 1 2 2 1 22 666 111111111111111 3 3 2 33 1 1 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 555555555 7 6 6 0 222222 5 5 77777777777777777777 77 1 77 6 4444444 888 3 6 7 66666666666666666666666666666666666 4 11111 0 2 2 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 22 3 3 3 1 22 666 2 1 3 4 777 11111 0
lowQualScore : . . .... .... . . . . . . .. ... ............... . . . .. . . . . . ... ..... . ..... . . .... . .... ...... ......... . . . . ...... . . .................... .. . .. . ....... ... . . . ................................... . ..... . . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . .. . . . . .. ... . . . . ... ..... .
lowQualScore : 5 3 3333 0000 0 7 0 5 0 0 88 222 888888888888888 2 2 0 22 0 0 0 2 0 222 55555 5 22222 0 3 2222 0 2222 222222 000000000 5 7 6 1 111111 7 7 44444444444444444444 99 4 77 7 3333333 777 2 3 8 88888888888888888888888888888888888 4 11111 1 8 8 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 22 6 6 6 5 11 444 1 0 2 0 000 33333 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCA-CCAAAAC---G---CAAA--CGATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCATTC-AGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TTATTAAAATTCATTATATTTCTACTG-AAAACATGTGT---CCC-GTTCAGATTTTGTGTTGCG-CC------------CC------TC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGNTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTCTTAAAAAATG----AAATAATTATTAAAATGGATAAAAAGAACCCATCTCATTNTCGTTAATAAATCAAATCCGNATGGTTTGGTACGGCAANTCCA-C-AAAAC---G---CAA---TGATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTANTGNTTGACGTCATTC-AGACTCTTTCTAAGATG-AAANTNTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCACA-T-TTATTAAAATNCATTATATTTCTACTG-AAAACATGTGT---CCC-GTTCAGATTTTGTGTTGCG-CC------------CC------TC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AATTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAANTTG---AAAAATCCTGACAAATTCC-CCT---TTAATC---GTATACCTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCA-CCAAAGCTTAA---CAAACATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCATTT-AGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTA-T-TTATTAAAATTCATTTTATTTCTACTG-AAAACATTTGTT--CCC-GTTCATATTTTGTGTTGAG-CC------------CC------TC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTT-TAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTT-TAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTAAAAAATT-----------CTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : ACTTT--------T--------G--------ACTTT----TCTCTCTGCAGTCTAACC-----TGG--------------TTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACATT-TTATTGAACTTCACTATATTTCTACTGAAAAACATGTGTG--CTC-GTTCAGATTTTGTGCTGTG-CCCTCTTAGTGTGTCC------TCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGC-AAAAC---GGGACAAAATCGATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCATTC-AGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATT-TTATTAAAATGCATTATATTTCTACTG-AAAACGTGTTTA--ACC-ATTCGGATTTTGTAGTGCGCCC------------CC------TC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATT-TAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G--------------TTTTAAAAAATTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGTG-----AAAAT---AT--CAA---T--TATT-AAATTGGAGTAGTAA-TTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATA-TGTTACCAAAATGCATTATATTTCTATTG-AAAATATGTTT---GCCAGTTCAGATTTTGTGTTGCA-CC------------CCCACCCCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTT-TAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCA-CCAAAAC-------------CGATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCATTC-AGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT---AT--T-TTATTAAAAT-CATTATATTTCTACTG-AAAA-A----------C-GATCAGATTTTGTGTGGCG-CC------------TC------TC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTT-CAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAACATGTG----CGG-GTTCAGAATTTGTGTTGCA-CC------------TC------TC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATG---TTGC---ACT--TTTAA---------------GTTGGA---------------------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCACGT---------------AAT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAg
gi|6 : CTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC--------------------TAGTAAAGTTCACTATATTTCTACTG-AAAA-ACGTGCTTGCCC-GTTCAGATTTTGTGTTGCA-TC------------GA------TC--TAAA------TCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TATA-TA-TAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTT-GAAATTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : --------TTTATTC-TAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAA-GTTG---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 33333333333 2222 66666666666666666 1 1 11111 1111 1111 111111 222222222 33333 111111 222222222222 1111 77777777777777777777777777777777777 11111 111111 2222222222222 111 111 11 11111111 1 33333
lowQualScore : 1 00000000000 8888 0 1 1 1 6 2 66666666666666666 3 3 11 0 0 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 222222222 6 6 0 77777 666666 5 999999999999 77 1 77 6 4444 3 888 3 6 7 66666666666666666666666666666666666 4 11111 0 2 2 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 22 3 3 3 4 77777777 1 3 4 777 11111
lowQualScore : . ........... .... . . . . . . ................. . . .. . . . . . ... ..... . ..... . . .... . .... ...... ......... . . . ..... ...... . ............ .. . .. . .... . ... . . . ................................... . ..... . . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . .. . . . . ........ . . . ... .....
lowQualScore : 0 77777777777 3333 7 0 0 2 5 5 88888888888888888 2 2 88 2 2 0 2 0 555 55555 5 22222 0 3 2222 0 2222 222222 888888888 7 6 1 11111 444444 7 333333333333 99 4 77 7 2222 3 777 2 3 8 88888888888888888888888888888888888 4 11111 1 8 8 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 22 6 6 6 6 55555555 0 2 0 000 33333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TTATTAAAATTCATTATATTTCTACTG-AAAACATGTGTN--CCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TTATTAAAATTCATTATATTTCTACTG-AAAACATGTGT---CCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGNTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAA---CAAA--CATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCA-TTTAGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTA-T-TTATTAAAATTCATTTTATTTCTACTG-AAAACATTTGTT--CCCGTTCATATTTTGTGTTG------AG-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTT-TAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTT-TAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTA-----------AAAAATTCTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : ACTTT--------T--------G--------ACTTT----TCTCTCTGCAGTCTAACC-----TGG--------------TTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACATT-TTATTGAACTTCACTATATTTCTACTGAAAAACATGTGTG--CTCGTTCAGATTTTGTGCTG------TG-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAAC---GGGACAAAATC--GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATT-TTATTAAAATGCATTATATTTCTACTG-AAAACGTGTTTA--ACCATTCGGATTTTGTAGTG------CGCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATT-TAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G--------------TTTTAAAAAATTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGT----GAAAAT---A---TCAA--T----TA-TTAAATTGGAGTAGT-AATTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATA-TGTTACCAAAATGCATTATATTTCTATTG-AAAATATGTTTG--CCAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTT-TAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCACCAAAAC-------------C--GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCA-TTCAGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT---AT--T-TTATTAAAA-TCATTATATTTCTACTG-AAAA-A----------CGATCAGATTTTGTGTGG------CG-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTT-CAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAACATGTG----CGGGTTCAGAATTTGTGTTG------CA-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATG---TTGC---ACT--TTTAA---------------GTTGGA---------------------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCACGT---------------AAT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAg
gi|6 : CTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC--------------------TAGTAAAGTTCACTATATTTCTACTG-AAAA-ACGTGCTTGCCCGTTCAGATTTTGTGTTG------CA-TC------------GATC--TAAA------TCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TATA-TA-TAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTTGAAA-TTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : --------TTTATTC-TAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAAG-TTG---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 33333333333 2222 66666666666666666 1 1 11111 1111 1111 111111 111111111 1 111 111111 222222222222 1111 77777777777777777777777777777777777 11111 111111 2222222222222 111 111 1 22222222 1 33333
lowQualScore : 1 00000000000 8888 0 1 1 1 6 2 66666666666666666 3 3 11 0 0 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 666666666 6 1 000 666666 5 999999999999 77 3 1 77 6 4444 3 888 3 6 7 66666666666666666666666666666666666 4 11111 0 2 2 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 0 3 3 3 4 00000000 1 3 4 777 11111
lowQualScore : . ........... .... . . . . . . ................. . . .. . . . . . ... ..... . ..... . . .... . .... ...... ......... . . ... ...... . ............ .. . . .. . .... . ... . . . ................................... . ..... . . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . . . . . . ........ . . . ... .....
lowQualScore : 0 77777777777 3333 7 0 0 2 5 5 88888888888888888 2 2 88 2 2 0 2 0 555 55555 5 22222 0 3 2222 0 2222 222222 222222222 7 4 777 444444 7 333333333333 99 9 4 77 7 2222 3 777 2 3 8 88888888888888888888888888888888888 4 11111 1 8 8 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 9 6 6 6 6 11111111 0 2 0 000 33333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTNTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTGTNCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAA---CAAA--CATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCA-TTTAGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTA-T-TT-ATTAAAATTCATTTTATTTCTACTGAAAA-CATTTGTTCCCGTTCATATTTTGTGTTG------AG-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTT-TAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTT-TAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTA-----------AAAAATTCTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : ACTTT--------T--------G--------ACTTT----TCTCTCTGCAGTCTAACC-----TGG--------------TTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACA-T-TTTATTGAACTTCACTATATTTCTACTGAAAAACATGTGTGCTCGTTCAGATTTTGTGCTG------TG-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAAC---GGGACAAAATC--GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATT-TT-ATTAAAATGCATTATATTTCTACTGAAAA-CGTGTTTAACCATTCGGATTTTGTAGTG------CGCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATT-TAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G-TTTT-A-A---------AAAA--TTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGT----GAAAAT---A---TCAA--T----TA-TTAAATTGGAGTAGT-AATTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATA-TGTT-ACCAAAATGCATTATATTTCTATTGAAAA-TATGTTTGCCAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTT-TAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCACCAAAAC-------------C--GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCA-TTCAGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT---AT--T-TT-ATTAAAA-TCATTATATTTCTACTGAAAA--A--------CGATCAGATTTTGTGTGG------CG-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTT-CAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAA-CATGTG--CGGGTTCAGAATTTGTGTTG------CA-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATG---TTGC---ACT--TTTAA---------------GTTGGA---------------------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCACGT---------------AAT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAg
gi|6 : CTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC--------------------T-AGTAAAGTTCACTATATTTCTACTGAAAAACGTGCTTGCCCGTTCAGATTTTGTGTTG------CA-TC------------GATC--T------AAATCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TATA-TA-TAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTTGAAA-TTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : --------TTTATTC-TAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAAGTT-G---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 33333333333 2222 66666666666666666 1 1 11111 1111 1111 111111 111111111 1 111111 222222222222 1111 77777777777777777777777777777777777 11111 111111 2222222222222 111 111 1 22222222 1 33333
lowQualScore : 1 00000000000 8888 0 1 1 1 6 2 66666666666666666 3 3 11 0 0 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 666666666 6 1 8 666666 5 999999999999 77 3 1 77 6 4444 3 888 3 6 7 66666666666666666666666666666666666 4 11111 0 2 2 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 0 3 3 3 4 00000000 1 3 4 777 11111
lowQualScore : . ........... .... . . . . . . ................. . . .. . . . . . ... ..... . ..... . . .... . .... ...... ......... . . . ...... . ............ .. . . .. . .... . ... . . . ................................... . ..... . . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . . . . . . ........ . . . ... .....
lowQualScore : 0 77777777777 3333 7 0 0 2 5 5 88888888888888888 2 2 88 2 2 0 2 0 555 55555 5 22222 0 3 2222 0 2222 222222 222222222 7 4 6 444444 7 333333333333 99 9 4 77 7 2222 3 777 2 3 8 88888888888888888888888888888888888 4 11111 1 8 8 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 9 6 6 6 6 11111111 0 2 0 000 33333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTNTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAA---CAAA--CATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCA-TTTAGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTA-T-TT-ATTAAAATTCATTTTATTTCTACTGAAAA-CATTTGTTCCCGTTCATATTTTGTGTTG------AG-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTT-TAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTT-TAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTA-----------AAAAATTCTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : ACTTT--------T--------G--------ACTTT----TCTCTCTGCAGTCTAACC-----TGG--------------TTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACA-T-TTTATTGAACTTCACTATATTTCTACTGAAAAACATGTGTGCTCGTTCAGATTTTGTGCTG------TG-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAAC---GGGACAAAATC--GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATT-TT-ATTAAAATGCATTATATTTCTACTGAAAA-CGTGTTTAACCATTCGGATTTTGTAGTG------CGCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATT-TAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G-TTTT-A-A---------AAAA--TTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGT----GAAAAT---A---TCAA--T----TA-TTAAATTGGAGTAGT-AATTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATA-TGTT-ACCAAAATGCATTATATTTCTATTGAAAA-TATGTTTGCCAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTT-TAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCACCAAAAC-------------C--GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCA-TTCAGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT---AT--T-TT-ATTAAAA-TCATTATATTTCTACTGAAAA--A--------CGATCAGATTTTGTGTGG------CG-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTT-CAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAA-CATGT--GCGGGTTCAGAATTTGTGTTG------CA-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATG---TTGC---ACT--TTTAA---------------GTTGGA---------------------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCACGT---------------AAT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAg
gi|6 : CTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC--------------------T-AGTAAAGTTCACTATATTTCTACTGAAAAACGTGCTTGCCCGTTCAGATTTTGTGTTG------CA-TC------------GATC--T------AAATCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TATA-TA-TAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTTGAAA-TTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : --------TTTATTC-TAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAAGTT-G---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 33333333333 2222 66666666666666666 1 1 11111 1111 1111 111111 111111111 1 111111 222222222222 1111 77777777777777777777777777777777777 11111 111111 2222222222222 111 111 1 22222222 1 33333
lowQualScore : 1 00000000000 8888 0 1 1 1 6 2 66666666666666666 3 3 11 0 0 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 666666666 6 7 1 8 666666 5 999999999999 77 3 1 77 6 4444 3 888 3 6 7 66666666666666666666666666666666666 4 11111 0 2 2 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 0 3 3 3 4 00000000 1 3 4 777 11111
lowQualScore : . ........... .... . . . . . . ................. . . .. . . . . . ... ..... . ..... . . .... . .... ...... ......... . . . . ...... . ............ .. . . .. . .... . ... . . . ................................... . ..... . . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . . . . . . ........ . . . ... .....
lowQualScore : 0 77777777777 3333 7 0 0 2 5 5 88888888888888888 2 2 88 2 2 0 2 0 555 55555 5 22222 0 3 2222 0 2222 222222 222222222 7 2 4 3 444444 7 333333333333 99 9 4 77 7 2222 3 777 2 3 8 88888888888888888888888888888888888 4 11111 1 8 8 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 9 6 6 6 6 11111111 0 2 0 000 33333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAA---CAAA--CATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCA-TTTAGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTA-T-TT-ATTAAAATTCATTTTATTTCTACTGAAAA-CATTTGTTCCCGTTCATATTTTGTGTTG------AG-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTT--------T--------A--------A--------TCTTTTT-TAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTT--------T--------A--------AGCGGGAAATCTATTT-TAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTA-----------AAAAATTCTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : ACTTT--------T--------G--------ACTTT----TCTCTCTGCAGTCTAACC-----TGG--------------TTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACA-T-TTTATTGAACTTCACTATATTTCTACTGAAAAACATGTGTGCTCGTTCAGATTTTGTGCTG------TG-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAAC---GGGACAAAATC--GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATT-TT-ATTAAAATGCATTATATTTCTACTGAAAA-CGTGTTTAACCATTCGGATTTTGTAGTG------CGCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTT--------T--------AAGCGAAACA--------TCTAATT-TAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G-TTTT-A-A---------AAAA--TTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGT----GAAAAT---A---TCAA--T----TA-TTAAATTGGAGTAGT-AATTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATA-TGTT-ACCAAAATGCATTATATTTCTATTGAAAA-TATGTTTGCCAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTT--------TAAGTGGGGA--------A--------TCTATTT-TAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCACCAAAAC-------------C--GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCA-TTCAGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT---AT--T-TT-ATTAAAAT-CATTATATTTCTACTGAAAA--A--------CGATCAGATTTTGTGTGG------CG-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATC-AAATGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGA--------A--------A--------TCTATTT-CAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAA-CATGT--GCGGGTTCAGAATTTGTGTTG------CA-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATG---TTGC---ACT--TTTAA---------------GTTGGA---------------------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCACGT---------------AAT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAg
gi|6 : CTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC--------------------T-AGTAAAGTTCACTATATTTCTACTGAAAAACGTGCTTGCCCGTTCAGATTTTGTGTTG------CA-TC------------GATC--T------AAATCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAAAA---A--------A--------A--------TATA-TA-TAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTTGAAA-TTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : --------TTTATTC-TAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAAGTT-G---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
blockSeqs : C AAAAACGCTAG AACC A G A C G GGGACAAAATCG T A AC T T CAT AAACG C TAAA A A GTTT C ACCA ACCCAC CCTACATT T T A G CACCCC C CTCTTAGTGTGT TA A T GT C GTAT T GCA A G T TAAGCGGGAAA G AATTT C C T A T A GAAT AAAT CATGTAT C ATATATACATTTT AGG GAA T AC CA A T A A A T TTTTGAAA C C A TAG GGTGT
blockSeqs : AAAAATG . T G G C C ATCAAT T A AC . . ATT A A TAAA A T G G . CCTT CTCATATG . G A T . . . . A T G . . T TCA A A T TAAGCGAAACA . . C T . . A . TCA . G C . G A . T T . G . . . A GCTTG A C . . A
blockSeqs : A C T . . CG . . GA . . ATC C C TTAA C G G C . TCTA CCCACAT . G . T . . . . T T G . . A TC A A T TAAGTGGGGAA . . T C . . . . CA . G A . . . . . A . T . . . A GTCTA A C . .
blockSeqs : C C A C T G T . ACTA ATT . T . T . . . . G T A . . G A . A A AAAGCGGGAAA . . C C . . . . CA . T C . . . . . A . . . . . A GTTTG A T . .
blockSeqs : C . . . . C A . . . . . . . . . . . A . . . . . . . . . AAAAAAAA . . C A . . . . A . T C . . . . . T . . . . . A TTTA A T . .
blockSeqs : . . . . . . . . TGACTTT . . G C . . . . G . G C . . . . . T . . . . . T GTTG T . . .
blockSeqs : AA . . C C . . . . A . G T . . . . . T . . . . . A TTG T . . .
blockSeqs : . . . A . . . . A . G A . . . . A . . . . . A G A . . .
blockSeqs : . . . . . . A . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqCons : TAAA* G*** CCCACATT* TAAGCGGGAAA************************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCATA-T-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTT--------T--------A--------A--------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCACATT-TT-ATTAAAATTCATTATATTTCTACTGAAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTTTAAGCGGGAAA------------------------TCTATTT-TAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT
Alignments
lowQualScore : 33333333333 2222 66666666666666666 1 1 11111 1111 1111 111111 11111 111111 222222222222 1111 11111 111111 2222222222222 111 111 1 22222222 1 33333
lowQualScore : 1 00000000000 8888 0 1 1 1 6 2 66666666666666666 3 3 11 0 0 0 0 0 333 22222 2 77777 3 3 4444 1 4444 222222 22222 7 6 5 8 666666 5 999999999999 77 3 1 77 6 4444 3 7 3 1 666 0 22222 1 1 3 3 7 3 333333 7777 9999999 4 0 7777777777777 0 111 111 4 99 88 3 0 3 3 3 4 00000000 1 3 4 777 11111
lowQualScore : . ........... .... . . . . . . ................. . . .. . . . . . ... ..... . ..... . . .... . .... ...... ..... . . . . ...... . ............ .. . . .. . .... . . . . ... . ..... . . . . . . ...... .... ....... . . ............. . ... ... . .. .. . . . . . . ........ . . . ... .....
lowQualScore : 0 77777777777 3333 7 0 0 2 5 5 88888888888888888 2 2 88 2 2 0 2 0 555 55555 5 22222 0 3 2222 0 2222 222222 33333 2 7 7 3 444444 7 333333333333 99 9 4 77 7 2222 3 2 2 7 777 4 55555 6 6 6 6 3 6 777777 7777 0000000 1 9 5555555555555 3 000 000 0 55 88 6 9 6 6 6 6 11111111 0 2 0 000 33333
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCACATTTTATTAAAATTCATTATATTTCTACTG-AAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTTTAAGCGGGAAATCTATTTTAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
Reference ( family-2484 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTNTTAAAAAACG----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCGTTAATAAATCAAATCCGNATGGTTTGNTATGGCAAATCCACCAAAAC---G---CAAA--C--GATATTTAAATTGGAGTGGTAAACTTGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAANTACTGCTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAANTTTTTTTACTACGTGTAAACCTGTATCAATGGCGGAT---C-TACTCTTTAAA-AAAACGGCNTACG---CCNCCTCC----CC-CCTA-AACTCCCACATTTTATTAAAATTCATTATATTTCTACTG-AAAA-CATGTTTGCCCGTTCAGATTTTGTGTTG------CG-CC------------CCTC--TAAACTGAAATCCTGGATCCGCCCCTGTGTATAACG-GA-TC----AANTTGAAATCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGCACTTTTAAGCGGGAAATCTATTTTAGTCTAACC-----TAGGCGCGTAGCCCAAGTTAGGA-AAT-CCC-T-TTT--A---ATATATTAT----TTTGGCATGTTTAAATA---G---ATATCCTTTTGGCAATACGGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAGTTTG---AAAAATCCTGATAAATTCC-CCT---TTAATC---GTATACTTTAA
gi|1 : AAATGTGTTA-----TT----AAATAATTATTAAAATGGATAAAAAG----CATCTCATTATCATTAATAGATAAAATTCGTTTGGCTTGTTATGTCAAATTCACCAAAGCTTAA---CAAA--CATGATATCTAAACTGGAGTGGTAAACTTGACACGAAATCCTCATTTTAAAAATAGACGGAACTTACATACTGCTTGACATCA-TTTAGGCTTTTTCTAAAATG-AAACCATATTTACTACGTGTAAGCCTGTACAAATGGCGGAT---C-TAATCTTTAAAGAAAACGACATAC----CCATATCC----CC-CTTA-AACTCCTGTATTT-ATTAAAATTCATTTTATTTCTACTG-AAAA-CATTTGTTCCCGTTCATATTTTGTGTTG------AG-CC------------CCTC--TAAACTGAAATCCTGGATCCATCCCTGTAAATAACG-GA-TC----AACTAGAAATCAAAATGAAGTCACGTGATTCATCTAAAACGTCACAAAATAGGTTTCACTTTTAA--------TCTTTTTTAGTCTAACC-----AAGGCGCGTAGCCAAAGTTAGGA-AAT-CCC-T-TTT--G---ATATATTAT----TTTGGCATATTTAAAAA---G---GTATATTTTTGGCAACACGGGGTCAGTGAGTATT-------------TATAGGTATGATATATT---GG---AA-A--AT-AT-G-TTTT-A-GC-CAATTTTAAAAAATTG---AACAATCCTGAAAAATTCC-CCT---TTAATC---ATATACTTTAA
gi|10 : tttacggctattttgacgctacttacatgggtttgaggttcggacaaaaatcctgtcccgagggataatcgtttttgctagaacgacgctctgccgagttcccgcgaaaagagttatcccaagggacggagtataaaaatagttatCAAAATATGTTACACTTTTAAGCGGGAAATCTATTTTAGTCTAACC-----TAGGTACCTAGCCCAAGTTAGGA-AAT-CCC-TATTT--A---ATATATTAT----TTTGGCATGTTTAGATA---G---ATACCTTTTTGACAGTATGGGGTCAGAGAGTATA-------------TATGGGCATGATACATT---GGA--AA-A--AT-AT-GTTTTT-A-GC-CAATTGTA-----------AAAAATTCTGATACATT-T-ACT---TTAAgtcgtatatttcttacgttacgtcatcaatgagtct
gi|11 : GTTAGGG-AAT-C---T-TTT--G---ATGCATTATAAATTTTGGCATGTTTAAAAA---G---ATACCCTTATGGgacatgcacc
gi|12 : tatgcaaaagttttcatttgtaacaagtgaccttcccatgctggaacatatagcagtgacttttgacttttctctctgcagtctaacctgTGGTGGAT---A-TACTCTTTAAA-AAAACAGCATAAG---CCCCCTCCACCACT-CCTT-AACTCCCACATTTTATTGAACTTCACTATATTTCTACTGAAAAA-CATGTGTGCTCGTTCAGATTTTGTGCTG------TG-CCCTCTTAGTGTGTCCTCTATAAACTGAAAACCTGGAACCatcagtgcataatgattatcttaattcaaagtttgaaatgatat
gi|15 : acCATGATATATT---GG---AATA--AA-AT-GGTTTT-A-GC-CAATTTTA-----------AAAAATCCTGAT--ATGCTACCT---TTAAagtactgt
gi|16 : a-AT-G-TTAT-G-GC-CAATTTTTTAAGCTTG---AAAAATCCTGACAAATTCC-C-----TTAAagtctta
gi|2 : AAAAAACGCTAGAAATGTCTTTAAAAATGGATAAAAAAAACCCATCTCATTATCGTTAATAAATCAAATCCGAATGGTTTGGTACGGCAAATCCAGCAAAAC---GGGACAAAATC--GATATTTAAATTGGAGTAGTAAACTCGAAACGAAATCCCCATTCTAAAAATAGACAGCACTTAACTAATGTTTGACGTCA-TTCAGACTCTTTCTAAGATG-AAACATTTTTTACTACGTGTAAACCTGTATTAATGGCGGAT---C-TACTATTTAAA-AAAACGGCTAACG---CCGCCTCC----CCACCCACAACTCCTACATTTTATTAAAATGCATTATATTTCTACTG-AAAA-CGTGTTTAACCATTCGGATTTTGTAGTG------CGCCC------------CCTC--TAAGCTGAAATCCTGAAACCACCCCTGTGTTTAGCG-GA-TC----AATTTGAAAGCAAAATGAAATCACGTGACTCATTTAATACGTCACAAAATATGTTGTACTTTTAAGCGAAACATCTAATTTAGTCTAAGC-----TAGGCGCGTAGCCTAAGTTAGAA-AAT-CCC-T-TTT--GAATATATATTAT----TTTGACAGTTTTAAATA---T---ATAT-CTGTTGACAATACAGTGTCAATGAGTTGA-------------TATATGCATGATGAGTT---GGGAAAA-A--AA-AT-G-TTTT-A-A---------AAAA--TTG---AAAAATCCTGGCAAATTCC-CTTTAGTTAATT---A-ATATTTTAAa
gi|3 : tatctcttaagttataagtgtatctttagctgggcgtgtgtatttaggacaagggaattgacggcaatatgccaatataatccctttaaaggggggtatattgataaggAAATGTCTTAAAAAATG----AAATAATTATTAAAATGAATAAAAAG----CATCTCATTCTCATTAATAAATCAAATCCGTATGTTTTGGTATTGCAAGT----GAAAAT---A---TCAA--T----TA-TTAAATTGGAGTAGT-AATTTGAAACGAAATCCTCATTTTAAAAATAGAAAGCACTAAACTACTGCTTGACGTCATTTTGGACTCTTTCTAAGATGTACAATTGTTTTACTATGTGTAAACCTGTGTCAATGGTGGAT---C-TACT--------AAACCGGCGTACG---CTCCTTCC----CC-TCTA-AACTCTCATATGTTACCAAAATGCATTATATTTCTATTG-AAAA-TATGTTTGCCAGTTCAGATTTTGTGTTGCACCCCCA-CC------------CCTC--TTAAC-GGAATCCTGGATCCACCCCTGTATATAATG-GA-TC----AATTTGAAATCAAAATAAAATCACATGACTCATTTAATACGTTACAAAATATGCTGAACTTTTAAGTGGGGAATCTATTTTAGTCTAACC-----TAGTTGCGTAGTCCAAGTTAGGA-AACATCT-T-TTT--A---ATCTATTAT----TTTGACAGGTTTAAATACATGTATATATATTTTCGGCAATACAGGGTCAGTGAGTATA-------------TATAGGCATGATATATT---GG---AA-AACAT-AT-A-TTTT-A-GC-CAATTTTAAAA----G---AAAAATCTTGATGAATT-C-TCT---TTAAtactggaaattgcagttaaattgtgggcatctttttttcagc
gi|4 : tatatcaggacaacacaagAATAAATCAACCCTGAATGGTTTACTATGGCAATTCCACCAAAAC-------------C--GATATTTAAATTGAAGTGGTAAACTTGAAACGAGATCCCAATTCTAAAATTAGACAGCACTTAGATATTGATTGACGCCA-TTCAGACTATTTCTGAGATG-AAAATCTTTTTACTACGTATAAACCTGCATCAATGACGGAT---C-TACTCTT---A-AAACCGACTTACGTTTCTTCCTCC----CC-ACTA-AACT-----ATTTTATTAAAAT-CATTATATTTCTACTG-AAAA--A--------CGATCAGATTTTGTGTGG------CG-CC------------TCTC--TGAACTGAAATCCTGGATCCGACCCTGTGTATAACA-GA-TC----TAATTGAAATCAAA-TGAAATCACATGACTCATTTAATACGTCACAAACTATGTTACACTTTAAAGCGGGAAATCTATTTCAGTCTAACG-----TAGGCGCATAGCCCAAGTTAAGA-AAT-CCCTT-TTT--A---ATATATTAT----TTTGGCATGCTTAAATA---T---ATATCCTTTTGGCAATAC-GGGTCGGTGAGTATA-------------TATGGGCAAGATATATTG--GG---AA-A--AT-ATAG---TA-A-ACATAATTTTAAAAGTCTA---AAGAgt
gi|5 : AAA-CATGT--GCGGGTTCAGAATTTGTGTTG------CA-CC------------TCTC--TAAACTTAAATCCAGGATCCGCCCCTTTGTATCACGTGACTCGTATAAGTTGCAA--AAGATGg
gi|5 : ATCACGTGACTCGT---ATAAGTTGCAAAAGATGTTGCACTTTTAAGTTGGAAATCTATTTTAGTCTAACC-----TAGGCACGTA---------------AT-CCC-T-TTTTCA---ATATATTAT----TTTGGCATGTTTAAATA---G---ATACCCTTTTGGCATTACGAGGTCAGTGAGTATA-------------TATAGGCATGCTAAATT---TG---AA-A--AT-AT-GTTTTT-A-GC-CAATTTTAAAAGTTTG---AAATATCCTGATAAATTTC-CTT---TCAttgcacttttaagttggaaatctattttagtctaacctaggcacgtaatccctttttcaatatattattttggcatgtttaaatagatacccttttggcattacgaggtcagtgagtatatataggcatgctaaatttgaaaatatgtttttagccaattttaaaagtttgaaatatcctgataaatttcctttcagaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|6 : aaacatgtgcgggttcagaatttgtgttgcacctctctaaacttaaatccaggatccgcccctttgtCTGTATCAATGGCGGATAAACGTACTCTTTTAA-AA---------CC---CCACTTCC----CC-------------------TAGTAAAGTTCACTATATTTCTACTG-AAAAACGTGCTTGCCCGTTCAGATTTTGTGTTG------CA-TC------------GATC--T------AAATCCTGTATTCGCCCCTGTGTATAAC-----------------------------AATCACACGAATCATTTAAAATGTCACAAAATATGTAGCACTTTAAA---AAAAATATA-TATAGTCTAGCCAATTTTAAACGTGTGA--AAAATCCTGATAAT-TCC-C-TTT--A---A-ATGTCAT----ATTGgaatggtcggtgaacaccccagaaaaaaagtaaacagatatcgctatctat
gi|7 : CGTAGCCCAAGTTAGGA-AAT-CTCAT-TTC--A---ATATATTAT----ATTAGCATATTTAAATA---G---ATATCTTTTCGGCAATA-GTGGTCAGTGAGTATA-------------TATAGTCATGATAAATT---GG---AA-A--ACAAT-G-TTTT-A-AA-CAATTTTATAATTTTGAAAAAAAATACTGATATATT-C-CCT---TTAAatagtgaacaaaatgta
gi|8 : AGGCCAAGTAAAGA-AAT-CCA-T-TTTC-A---ATATATCAA----TTTAACATAGTTAAACA---G---ATATTCTTGTGACAATACAGGGTCAATGAGTATAATATATACATTTTTATAGACATGATATATTAGGGG---GG-A--A--AT-G-CTTTAA-GC-CTATTTTGAAA-TTTA---AAAAATACTGATGTACTTC-CTT---Tgaaaatgtcatgaaatatcacagcgtctctaagtagacaaatacgttttaacataatatcacgtacatggtcaatctgagaaaatgatgctaatgtcatcttgactt
gi|9 : TTTATTCTAGTCTAACC-----TAGGCACGTAGCCAACATAAGAA-AAT-CCC-T-TTTC-A---ATATATTTT----TTTGGCATGTTTAATTA---G---ATATATGTTTGGCAGTACGGGGTCAGTGgtgggtcacatgacaatgttaaaatcaatcttactcgtattcattcatcaaatctatttttacactttgtcattgatgactaccaatgtgtgaaac
gi|9 : GGCATAATATATA---GG---AA-AT-AA-AT-G-TTTT-AAGC-CAATTTTAAAAGTT-G---AAAAATCCTGACAAATT-C-CCT---TTAAACGGTGTATACCTcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcataatatataggaaataaatgttttaagccaattttaaaagttgaaaaatcctgacaaattccctttaaacggtgtatacctgatgcacattggttgcctttaacacc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGTTTGTATCAAATTTTATGCACCAGTCATTTGCAGCCATTGCCCTTCCCAGGCTGGGGGACATAGCATTGACTTTGACT
Unaligned ( gi|14 ): TTAGATGTATGGCTATGTTGGCTACGATATCGGATAACGAATACATTGTATATGGACATGAAACTTGTAAATAAT