lowQualScore : 11111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 11111 1 6666666666666666666666666666666666 2222222222222 22222 1 11 1 11 22222222222222222 444444444 1111 111 33333333333 1111 444444444444444444444444444444444444444444444444444444444444444444444444444 11 111111 11 33333333 2222 444444444444 111 2222 222 44444444444444444444444444444 111 1111111 1 1111111111111 1
lowQualScore : 1 6 55 8 0 00 55555 5 77 0 8888888888888888888888888888888888 3 9999999999999 66666 0 22 9999 0 66 3 00000000000000000 55 333333333 4 2222 000 33333333333 3333 1 3 5 1 000000000000000000000000000000000000000000000000000000000000000000000000000 0 66 66 777777 66 55 33333333 4 8888 1 66 9999 555555555555 555 5555 111 4 4 55555555555555555555555555555 3 4 999 3 44 9 3 3 8888888 555 0 3 5555555555555 6666 777 1 111 0 0 3 88 6
lowQualScore : . . .. . . .. ..... . .. . .................................. . ............. ..... . .. .... . .. . ................. .. ......... . .... ... ........... .... . . . . ........................................................................... . .. .. ...... .. .. ........ . .... . .. .... ............ ... .... ... . . ............................. . . ... . .. . . . ....... ... . . ............. .... ... . ... . . . .. .
lowQualScore : 0 0 55 2 5 66 88888 7 99 1 8888888888888888888888888888888888 5 0000000000000 00000 0 22 2222 0 66 8 22222222222222222 00 000000000 0 1111 000 77777777777 8888 4 2 0 2 222222222222222222222222222222222222222222222222222222222222222222222222222 2 11 11 888888 11 77 99999999 4 2222 0 11 4444 666666666666 000 2222 555 0 0 00000000000000000000000000000 6 3 666 3 66 6 8 1 9999999 000 0 1 7777777777777 5555 888 2 777 0 2 3 22 0
consensus : AACTGCCGTGTACTTCAGAGATCAATATNAGCTG--ANAGGGAAGAT-TCC--TTTTCAG---ATA---TTGAAACTA-TT-A-TTCCGTAGTGCACTTAAAAT-GTTA-----TACTTGGAAAAT--G--TA-GA-CTGATAGGGAAGATTCTTTTTCAGATAATATTAAAAATATTTCN-----TTCCGTNGTGCAC---------TTANATA----CT---TG----GAA--AATGTTN-ACACTTTTG-TTAATACAAACATCAA----G----GA---------------------T-CATA--------------TTG-A-AN--AT---------TCGGAGATT--TTNACATTG-----A--AACTTATT-ACATGTA---GCA-TTGTAAAG-AT-C--ATTTCATTCTCCCAT--TA----TTGTC------------CTGGCTATTGTGTGAAG--NCATAAAATT-GAT-C-AGGAAATCAGATTAAGTAAAAA-A-A----CA-AGCTAAAA--CC-T--CTATAAACCGGA-AACC------TCT---CTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGG-AGGTTGCACTGTA
Reference ( gi|1 ) : AACTGTCACGTACTTTAGAGGTCAAAATTAGCTG--ACAGGGAAGAT-TCC--TTGTCAG---ATA---TTGAAACTATTTCA-TTCCGTAGTCCACTTAAAATGGTTA-----TACTTGGAAAAT--A--TA-GA-TTGATAAGGAAGATTTCTTTTCAAATAATATT---------TCC-----TTCCGTAGTGCAC---------TTATATA----CT---TG----GAA--A-TGTTA-ACACTTTTG-TTAATACAAACATCAA----G----GA---------------------TGCATA--------------TTG-A-AC--AT---------TCGGAGATT--TTGACATTG-----A--AACTTATT-CCATGTA---ACA-ATGTAAAG-AT-A--ATTTTATTCTCCCAT--TA----TTGTC------------CTGGTTATTGTGTGAAG--TAATAAAATA-AAT-C-AGTAAACCAGACTATGTAAAAA-A-A----CA-AGCTAAAA--GC-T--CTATAGACCAGA-AACT------TCT---CTAAACAGAACTT-------------TTT----GC--TCGGTCCCGAGGTTTTCCAGTTTACAG-AGGTCGCGCTGTA
gi|2 : AACTGCCATGTATTTCAGAGATCAGTATAAGCTG---C--------T-TCC--TTTTCAG---ATA---TTA----TATT--------GTAGTGCACTTAAAATAGTTA-----TATTTGGAAAAT--A--CA-AG-CTGATAGGGAAGATTGCTTTTCAGATAATATTGAAAATATTTCC-----TTCCATTGTGCAC---------TTAAATA----CT---TG----GAA--AATGTTT-ACATTTTTG-TTAATACAAACATCAA----G----GA---------------------T--------------------TG-A-AA--AT---------TCAGAGATT--TT-ACAT-G-----A--AACTTATT-GCATGTA---GCA-TTGTAAAG-AC-C--ATTTTATTCTCCCAT--TA----TTGTC------------CTGTCTATTGTGTGAAG--GCATAAAAT--AAT-C-AG-GAATCAG-----GT--AGA-T-A----CA-AGCTAAAA--CC-T--TTATAAACCGGA-AACC------TCT---CTAAATCGAACTTTGTGAAATCGAACTTT----GTAATTGGTCCTGGGGTTATCCAGCTTACAG-AGGTTG
gi|4 : AACTATAGTGAACATCAGAGATCAATATATGCTGTCAGAGGGAAGATAGCCGTTTATTAA---AAA---TTGAATCT--------------------TTAAAATGCTTA-----TACTTGg
gi|3 : tatagtgtacataatAATTGCCATGTACTTCAGAGATCAATACGAGCTG--ACAGGGAAGAT-TCT--GTTTCAGTAAATT---TTGAAA--A----G-TTCTGGTGTGCACATAAAGTTGTTA-----TACatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|3 : aattgccatgtacttcagagattaatacgagctgacttctataatgtacaaaatACTTT-----TCAAAATTTACTG--AAACAGAATCT-TCC--CTGTCAGCTCGTA---TTGAatagtctgggtgtgaaatgttttacactttgttaatacaaatatcaaatctggatctacatcttcacacatatggaaagttcaaaattgtttgcattaacttataacatgtagttgcatttttaaagatcatctcattctggcataaaattgatctagaaatcagataaattaactataagctaaaaccgctcttgaaccggatgttttgttcggtccagaggttgtctggtgtagtaggttacactgtat
gi|7 : aattgccatgtacttcagagattaatacgagctgacttctataatgtacaaaataattgccatgtacttcagagaTCAGCTG--ATAGGGAAGAT-TCC--TTTTCAGTA-ACA---TTGAtctggtgtgcacataaagttgttatacatagtctgggtgtgaaatgttttacactttgttaatacaaatatcaaatctggatctacatcttcacacatatggaaagttcaaaattgtttgcattaacttataacatgtagttgcatttttaaagatcatctcattctggcataaaattgatctagaaatcagataaattaactataagctaaaaccgctcttgaaccggatgttttgttcggtccagaggttgtctggtgtagtaggttacactgtat
gi|5 : GGGAAGAT-TAT--TTTTCAG---ATACTATTACAATTATTT-A-TTCCGTAGTGCACTTGA-------A-----TACTGGGAAAAT--GTTTA-GA-CTtgtatggttatatttggtgtaaatattttatttatacaaacatcaaagtcgggacatcgatattaccatgcatacatgtaaaagttatttgcataaacttaaaattgttacatgtagccttgtagtagactaacaaacttgatcaggccattccccaatgcatttaaaaaaaacaactactgtacataaaggcacaaaatttaccaagaaatcatgtaaagtaaaaatccaataaacctctctaaactagacttattgcttggttgtctggtttacaaaggtaacagtg
gi|6 : gattAAGAT-TCT--TTTTCCG---ATAATATTAAAAATAGTTCC-TTTCGTAATGCACTTAA-------A-----TACTTGGAAAAT--G--Ttttgcgaatacaaacatcaagtctgaatctcaatcttatcatatacacgtatattgaacttattgaagatttttacattgaaacgtattacttgtatcattgtaatgaccattgcattatcctattattgacatggctattgtgtaaagacaaaattgatcaagaaaccagattacgtaaaaacaaccccaaatataatatataaaccagaaacctctctaaaccgaacatttcctttggtcgcgagtttgtcccgtttacagatattgcactgt
gi|3 : TCAG---AGA---TTAATACGAGCTGACTTCTATAATGTAC--AAAATAATTGCCATGTACTTCAGAGATCAA--TACGAGCTGACAGGGAAGATTCTGTTTCAG-TAA-ATT---------TTGAAAAGTTCTGGTGTGCACATAAAGTTGTTATACATAGTCTGGGTGT---GAA--A-TGTTTTACACTTT-G-TTAATACAAATATCAAATCTG----GATC-------------------TACATC--------------TTC-ACAC--AT---------ATGGAAAGT--TCAAAATTGTTTGCATTAACTTATA-ACATGTAGTTGCATTTTTAAAG-AT-C--ATCTCATTCTGGCATAAAA----TTGAT------------CT-------------AG--AAATCAGATA-AAT-T-A---------ACTAT----------------A-AGCTAAAACCGC-T--CT----------------------------TGAACCGGATGT-------------TTT----GT--TCGGTCCAGAGGTTGTCTGGTGT--AGTAGGTTACACTGTAttacactttataaatacaaacatcaaggatgtatattgaatatatagaaaactcagagatgtttacattgaaacttattttatgtagtattgtaaaggccatttcattctcacattattgtcctggctattgtgtgaaggtatgaaactaatcaggaaaccagattaattaaaaacgaggtaaaatcttataaaccggaagcctctctatctctaaaccgaacattttgctcggtcccgagattgtctagtttacggtaatttcactgtacataaa
gi|5 : aattgccatgtact-GA-TTG----GGAAGATTATTTTTCAGATACTATTACAATTAT-TTA-----TTCCGTAGTGCAC---------TTGAATA----CT---GG----GAA--AATGTTT-AGACTTTTG-CGAATACAAACATCAA----GTCT-GAATCTCAATCTTATCATATACACGTATA--------------TTG-A-ACTTAT---------T-GAAGATT--TTTACATTG-----A--AACGTATT-ACTTGTA---TCA-TTGTAATG-AC-C--ATTGCATTATCCTAT--TA----TTGAC------------ATGGCTATTGTGTAAAG----ACAAAATT-GAT-C-AAGAAACCAGATTACGTAAAAACA-ACCC-CA-AA-TATAA-----T--ATATAAACCAGA-AACC------TCT---CTAAACCGAACAT-------------TTC----CT--TTGGTCGCGAGTTTGTCCCGTTTACAG-ATATTGCACTGTt
gi|7 : TGATAGGGAAGATTCCTTTTCAG-TAACATT-----------------------GATGTATGG-------TTATAT------T---TG----G------TGTAA-ATA-TTTTA-TTTATACAAACATCAA----A----G---------------------------------------------------------------TCGG---------GACATCG-----A------TATTACCATGCAT--AC--ATGTAAAA-GT-T--ATTT
gi|6 : tcagcAAGATTCTTTTTCCGATAATATTAAAAATAGTTCC-----TTTCGTAATGCAC---------TTAAATA----CT---TG----GAA--AATGTTT-ACACTTT-A-TAAATACAAACATCAA----G----GA---------------------TGTATA--------------TTG-A-AT--ATATAGAAAACTCAGAGATG--TTTACATTG-----A--AACTTATT-TTATGTA---GTA-TTGTAAAG-GC-C--ATTTCATTCTCACAT--TA----TTGTC------------CTGGCTATTGTGTGAAG--GTATGAAACT-AAT-C-AGGAAACCAGATTAATT--AAA-A-A----CG-AGGTAAAA--TC-T---TATAAACCGGA-AGCCTCTCTATCT---CTAAACCGAACAT-------------TTT----GC--TCGGTCCCGAGATTGTCTAGTTTACGG-TAATTTCACTGTAgcataaacttaaaattgttacatgtagccttgtagtagactaacaaacttgatcaggccattccccaatgcatttaaaaaaaacaactactgtacataaaggcacaaaatttaccaagaaatcatgtaaagtaaaaatccaataaacctctctaaactagacttattgcttggttgtctggtttacaaaggtaacagtg
gi|4 : TATA----CT---TGATTTGAACAA-TTTTA--CACTTTTG-TTTATACAAACATCAA----G----TA---------------------Tcataaa
gi|12 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgctATA----TT---TG---------A-TTTTA-A-----TTGATTGATGAAAACA---A----G----TA---------------------T---TA--------------ATG-A--C--AT-----------GGAAATTACTTTTCAGTG-----A--AAATAA-----ATGTG----CA-CTGTAAAGGAT-C--ATCTCATTCTACCAT--TA----TTGTT------------CTGGAAATTGTGTGAAG--TAATAACATT-AATCC-AG-AAATAAGAtggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|8 : TA-A-ACTTCTG-TTGATACAAACAT--A----GCCTCGA---------------------C-CTTAACTTTAACTCACTTTTGTA-AA--AT---------TCAGAGCTT--TTTTCATT------A--AACGTATT-GCATAGA---ACA-TTGTAAA--AT-ATTATTTTATAC-CCCAA--TAAGGGTTGTTATTAGAATTACATTGGTGATTGTGTGAAC--ACATCAAAT--TAT-C-AAGAAATTCGAATAAGT--AAA-A-A----CA-AATTAAA----CAT--CTATAAACCGGA-ATCA------TTG---CTTAACCGGACGT-------------TTTATTCGT--TCGGTCCCAAGGTTGTCCGGT
gi|4 : A--------------TTA-A-AA--GA---------TCAGAGTTT--TTG-CATT------A--AACTTATT-ACAT-----------TGTT--G-ATTACCATCTCATTCTCCCGT--TA----TTGTC------------CTGCCCCTTGTTTTAAG--TCATAAAATT-GAT-CCAG-AAATCAGATTTAGTAAAA----A----CA-AGCTGAAA--CC-T--CTATAAACTGGA-AACC------TCT---CTAAACCAGACTT-------------Taaaccaatataatgttacact
gi|9 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgcttatacttgatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactg--TTG-CATT------A--AACTTATT-ACATGTA---TCA-TTGTAAAG-AG-ACCAATTTAGTCTCCTAT--AA----TTGTTATAAGAACTACTCTGGCTATTGTGTGAAGGCTGACATGGTATGAT-G-AAGAAGTTAGATAAAGTAATAA-C-AGTGTCA-AGCTAAA---TC-T--CTATAAACTGAA-AATC------TCT---CTGAACCGGACTT-------------TAT----GT--TCAATACCGAAGTTTTCCATTTT
gi|11 : --ATCTCATACCCCTAT--CA----TTGTA------------CTA---------TGAAG--GCATAAACTT-GAT-C-AGGAAATCA---TTTTTAGTAA-T-AT---CT-AGCTAAAA--TC-TAGCTATAAATCAGA-AACC------TCT---CTAAACCAGACTT-------------TTT----GT--TTGGTTATGAGGTTGTCCGGTTTACAA-AGGTTGCAtaatattataatacaatgtacttcat
gi|13 : ctcacaatacgggagagttcacatgtctgcttattacATAAAATT-GAT-C-AAGAAATCTGATT---TAGAAA-ACA----GA-AGCTAAAA--TC-T--CTTTA--------AAC------------------CAGA-CTT-------------TTT----GT--TTGGT-TTGAGGTTGTCCAGTTCAGGG-AGGTTACA
gi|10 : AAAAA-A-A----TACAG-TGAAA--CC-T--TTATAAACTGGA-AACC------TTT---CTAACCAG-ACTT-------------TTT----GT--TTGGTCCTGAGGTTGTCTGGTTTACGG-AGGTTACACTGTA
gi|14 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcaca----CA-AGTTAAAA--CC-T--CGGTAAACCGGA-ACGA------TTT---GTAAACCAGACTT-------------TTT----GT--TCAGTCCCGAGGTTGTCCGGTTTACGA-AGGTgt
gi|10 : gtattgtatttAA--CC-T--CCGTAAACCAGACAACC------TCAGGACCAAACAAAAAGT-------------CTG----GT--TAGA----AAGGTTT-CCAGTTTATAA-AGGTTTCACTGTAtaaactat
gi|7 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcacaaaaaaaaA-AACC------TCT---CTAAACTAGACTT-------------ATT----GC--TT--------GGTTGTCTGGTTTACAA-AGGTacactgtagt
gi|16 : tcagctgatagggaagattccttttcagtaacattgatgtatggttatatttggtgtaaatattttatttatacaaacatcaaagtcgggacatcgatattaccatgcatacatgtaaaagttatttgcataaacttaaaattgttacatgtagccttgtagtagactaacaaacttgatcaggccattccccaatgcatttaaaaaaaacaactactgtacataaaggcacaaaatttaccaagaaatcatgtaaagtaaaaatccaatCC------TCT---CTAAACCAGACTT-------------CGT----AT--TAGGTCTCAAGATTGTCTGGTTTACGG-AGATaacagtg
gi|4 : GAGGTTT-CCAGTTTATAG-AGGTaagattgca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAGTGAAACTTCTGTAAACCGGACACTATATAAACCAGACATTTTGTTTGGTCCTGAGGTTGTCCGGTTTACTGAGGTTACACTGTAA
Unaligned ( gi|17 ): TGAAACCTCCATAAACTGGACACTCTGTAAACCGGACATTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 222 1 11111 333333333333333 222222222 1111 11111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111111 11111111111 4444444444444 111111111 11 1111111 1111111111111
lowQualScore : 2 1 99999999999999999999999999999999999999999999999999999999999 444 0 3 3 77777 99 77 0 5 666666666666666 3 1 1 222222222 6 2222 22222222222 1 66 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 8 99 2 111111 4 777 4 99999999999 99999 55 0 3 7777 0000000000000 444444444 1 55 2 7777 1 0 22 22 8888888 2 6 33 444 777777 0 3333333333333 5555 33 0
lowQualScore : . . ........................................................... ... . . . ..... .. .. . . ............... . . . ......... . .... ........... . .. . .................................................................................................... . . .. . ...... . ... . ........... ..... .. . . .... ............. ......... . .. . .... . . .. .. ....... . . .. ... ...... . ............. .... .. .
lowQualScore : 0 0 55555555555555555555555555555555555555555555555555555555555 000 0 2 2 00000 22 99 9 1 333333333333333 0 0 4 999999999 6 1111 44444444444 4 77 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 9 44 5 555555 0 000 0 00000000000 11111 55 4 6 7777 7777777777777 555555555 4 00 3 1111 6 7 88 33 0000000 9 6 33 111 222222 5 8888888888888 7777 99 5
consensus : AACTGCCATGTACTTCAGAGATCAATATAAGCTG--A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTA-T--ATT-CCGTAGTGCACTTAAAAT-G-TTA-TACTTGGAAAATATANGCTG--ATAGGGAAGAT--TCCTTTTCAGATAATATTGAAAAT---ATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-------------C---------------ATA--------------TTG------A-AA--AT---------TCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTA---GCA-TTGTA-----------AA---G-A--CCATTTCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAA-NA----CA-AGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
Reference ( family-226 ) : AACTGCCGTGTACTTCAGAGATCAATATNAGCTG--ANAGGGAAGAT--TCCTTT-TCAGATATTG---AAACTATT--ATT-CCGTAGTGCACTTAAAAT-G-TTA-TACTTGGAAAATGTAGACTG--ATAGGGAAGAT--TCTTTTTCAGATAATATTAAAAAT---ATTTCNTTCCGTNGTGCAC---------TTANATA----CTTG----G---AA-AATGTTN-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-------------C---------------ATA--------------TTG------A-AN--AT---------TCGGAGATT-TTNACATTGAAACTTA------TTACAT-GTA---GCA-TTGTA-----------AA---G-A--TCATTTCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGNCATAAAAT----TGATCAGGAAATCAGATTAAGTAAAAA-AA----CA-AGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
gi|1 : AACTGTCACGTACTTTAGAGGTCAAAATTAGCTG--ACAGGGAAGAT--TCCTTG-TCAGATATTG---AAACTATTTCATT-CCGTAGTCCACTTAAAAT-GGTTA-TACTTGGAAAATATAGATTG--ATAAGGAAGAT--TTCTTTTCAAATAATATT------------TCCTTCCGTAGTGCAC---------TTATATA----CTTG----G---AA-A-TGTTA-ACACTTTTGTTAATACAAACATCAA----G----------G-------ATG------------C---------------ATA--------------TTG------A-AC--AT---------TCGGAGATT-TTGACATTGAAACTTA------TTCCAT-GTA---ACA-ATGTA-----------AA---G-A--TAATTTTATTCTCCCAT-TA----TTGTC------------CTGG---------TTATTGTG--TGAAGTAATAAAAT----AAATCAGTAAACCAGACTATGTAAAAA-AA----CA-AGCTAAAAGCT--CTATAGACCAGAAACT------TCTCTAAACAGAACTT-------------TTT----GC--TCGGTCCCGAGGTTTTCCAGTTTACAGAGGTCGCGCTGTA
gi|10 : AAAAA-AA----TACAG-TGAAACCT--TTATAAACTGGAAACC------TTTCTAA-CCAGACTT-------------TTT----GT--TTGGTCCTGAGGTTGTCTGGTTTACGGAGGTTACACTGTA
gi|11 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcacaCATCTCATACCCCTAT-CA----TTGT----------------A---------CTAT-------GAAGGCATAAACT----TGATCAGGAAATCATTTTTAGT--AAT-AT----CT-AGCTAAAATCTAGCTATAAATCAGAAACC------TCTCTAAACCAGACTT-------------TTT----GT--TTGGTTATGAGGTTGTCCGGTTTACAAAGGTTGCACgt
gi|12 : ctcacaatacgggagagttcacatgtctgcttattaAAAACAAGTATTAA----T----------G-------A--------------C---------------AT-----------------G------G-AA--AT---------T-----ACT-TTT-CAGTGAAA---A------T-AAAT-GT----GCA-CTGTA-----------AA---GGA--TCATCTCATTCTACCAT-TA----TTGTT------------CTGG---------AAATTGTG--TGAAGTAATAACAT----TAATCCAGAAATAAGA
gi|13 : atatttgattttaattgattgatgATAAAAT----TGATCAAGAAATCTGATTTAG--AAAA-CA----GA-AGCTAAAATCT--CT-----------------------TTAAACCAGACTT-------------TTT----GT--TTGGT-TTGAGGTTGTCCAGTTCAGGGAGGTTACAC
gi|14 : ----CA-AGTTAAAACCT--CGGTAAACCGGAACGA------TTTGTAAACCAGACTT-------------TTT----GT--TCAGTCCCGAGGTTGTCCGGTTTACGAAGGTTAAACTAT
gi|15 : gtattgtatttA-AG-TGAAACTT--CTGTAAACCGGACAC-------TATATAAACCAGACAT-------------TTT----GT--TTGGTCCTGAGGTTGTCCGGTTTACTGAGGTTACACTGTA
gi|16 : CC------TCTCTAAACCAGACTT-------------CGT----AT--TAGGTCTCAAGATTGTCTGGTTTACGGAGATa
gi|17 : TGAAACCT--CCATAAACTGGACA-C------TCTGTAAACCGGACAT-------------TTT----aagattgca
gi|2 : AACTGCCATGTATTTCAGAGATCAGTATAAGCTG--C---------T--TCCTTT-TCAGATATTA----------T--ATT---GTAGTGCACTTAAAATAG-TTA-TATTTGGAAAATACAAGCTG--ATAGGGAAGAT--TGCTTTTCAGATAATATTGAAAAT---ATTTCCTTCCATTGTGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACATTTTTGTTAATACAAACATCAA----G----------G----------------------------------------A--------------TTG------A-AA--AT---------TCAGAGATT-TT-ACA-TGAAACTTA------TTGCAT-GTA---GCA-TTGTA-----------AA---G-A--CCATTTTATTCTCCCAT-TA----TTGTC------------CTGT---------CTATTGTG--TGAAGGCATAAAA-----TAATCAGG-AATCAGGT-------AGA-TA----CA-AGCTAAAACCT--TTATAAACCGGAAACC------TCTCTAAATCGAACTTTGTGAAATCGAACTTT----GTAATTGGTCCTGGGGTTATCCAGCTTACAGAGGTTGa
gi|3 : AATTGCCATGTACTTCAGAGATTAATACGAGCT-----------GAC--TTCT-------ATAATGTACAAAATA----ATTGCCAT---GTACTTCAGAG-A-TCAATAC---GAG--------CTG--ACAGGGAAGAT--TCTGTTTCAGTAAATTTTGAAAA---------GTTCTGGTGTGCACATAAAGTTGTTATACATAGTCTGG----GTGTGA-AATGTTTTACACTTT-GTTAATACAAATATCAAATCTG----------G-------ATCTACATCTTCACAC---------------ATA--------------TGG------A-AA--GT---------TC-AAAATTGTTTGCATT--AACTTA------TAACAT-GTAGTTGCATTTTTA-----------AA---G-A--TCATCTCATT-------------------------------CTGG---------C----------------ATAAAAT----TGATCTAGAAATCAGATAAATT--AAC-TA----TA-AGCTA------------AAACCG-----C------TCT-TGAACCGGATGT-------------TTT----GT--TCGGTCCAGAGGTTGTCTGGTGTA-GTAGGTTACACTGTAg
gi|4 : AACTATAGTGAACATCAGAGATCAATATATGCTGTCAGAGGGAAGATAGCCGTTTATTAAAAATTG---AATCT--------------------TTAAAAT-GCTTA-TACTTGt
gi|4 : tatagtgtacataatAATATATGCTGTCAGAGGGAAGATAGCCGTTT---------ATTAAAAATTGAAT--CTTT--AAAATGC-----------TTA--TA----CTTGATTTG---AACAAT-TTT-ACACTTTTGTTTATACAAACATCAA----G----------T-------AT-------------atttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|4 : tatagtgtacataataactatagtgaacatcagagatcA--------------TTA------A-AA--GA---------TCAGAG-TT-TTTGCATT-AAACTTA------TTACATTGTT---G-A-TT---------------------A--CCATCTCATTCTCCCGT-TA----TTGTC------------CTGC---------CCCTTGTT--TTAAGTCATAAAAT----TGATCCAGAAATCAGATTTAGT--AAA-AA----CA-AGCTGAAACCT--CTATAAACTGGAAACC------TCTCTAAACCAGACTT-------------Ttggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|5 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgcttatacttgatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgG--ATTGGGAAGAT--TATTTTTCAGATACTATTACAATT---ATTT-ATTCCGTAGTGCAC---------TTGAATA----CTGG----G---AA-AATGTTT-AGACTTTTGCGAATACAAACATCAA----GTCTGAATCTCA-------AT-------------CTTATCATATACACGTATA--------------TTG------A-ACTTAT---------T-GAAGATT-TTTACATTGAAACGTA------TTACTT-GTA---TCA-TTGTA-----------AT---G-A--CCATTGCATTATCCTAT-TA----TTGAC------------ATGG---------CTATTGTG--TAAAGAC--AAAAT----TGATCAAGAAACCAGATTACGTAAAAACAACCC-CA-AA-TATAA--T--ATATAAACCAGAAACC------TCTCTAAACCGAACAT-------------TTC----CT--TTGGTCGCGAGTTTGTCCCGTTTACAGATATTGCACTGT
gi|6 : AAGAT--TCTTTTTCCGATAATATTAAAAAT---AGTTCCTTTCGTAATGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACACTTT-ATAAATACAAACATCAA----G----------G-------ATG------------T---------------ATA--------------TTG------A-AT--ATATAGAAAACTCAGAGATG-TTTACATTGAAACTTA------TTTTAT-GTA---GTA-TTGTA-----------AA---G-G--CCATTTCATTCTCACAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGTATGAAAC----TAATCAGGAAACCAGATTAATT--AAA-AA----CG-AGGTAAAATCT---TATAAACCGGAAGCCTCTCTATCTCTAAACCGAACAT-------------TTT----GC--TCGGTCCCGAGATTGTCTAGTTTACGGTAATTTCACTGTA
gi|7 : CTG--ATAGGGAAGAT--TCCTTTTCAG-TAACATTGA---T---GT--------ATGGT----------------TATA----TTTG----G--------TGTAA-ATA-TTTTATTTATACAAACATCAA----A----------GTCGGGACAT-------------CG--------------ATA--------------TTACCATGCATAC--AT---------GTAAAAGTTATTTGCAT--AAACTTAAAATTGTTACAT-GTA---GCC-TTGTAGTAGACTAACAAACTTG-A--TCAGGCCATTCCCCAATGCA----TT----------------TAAAAAAAACAACTACTGTACATAAAGGCACAAAAT----TTACCAAGAAATCATGTAAAGTAAAAA-TC----CA-A--T--------------------AAACC------TCTCTAAACTAGACTT-------------ATT----GC--TT--------GGTTGTCTGGTTTACAAAGGTcataaa
gi|8 : tcagACTTCTGTTGATACAAACAT--A----GCCTC------G-------AC-------------C---------------TTAACTTTAACTCACTTTTGT-----A-AA--AT---------TCAGAGCTT-TTTTCATT-AAACGTA------TTGCAT-AGA---ACA-TTGTA-----------AA---ATA--TTATTTTATAC-CCCAA-TAAGGGTTGTTATTAGAATTACATTGG---------TGATTGTG--TGAACACATCAAAT----T-ATCAAGAAATTCGAATAAGTAAAAA-------CA-AATTAAA-CAT--CTATAAACCGGAATCA------TTGCTTAACCGGACGT-------------TTTATTCGT--TCGGTCCCAAGGTTGTCCGGTaacagtg
gi|9 : taaTTGCATT-AAACTTA------TTACAT-GTA---TCA-TTGTA-----------AA---G-AGACCAATTTAGTCTCCTAT-AA----TTGTTATAAGAACTACTCTGG---------CTATTGTG--TGAAGGC-TGACATGGTATGATGAAGAAGTTAGATAAAGTAATAA-CAGTGTCA-AGCTAAA-TCT--CTATAAACTGAAAATC------TCTCTGAACCGGACTT-------------TAT----GT--TCAATACCGAAGTTTTCCATTTTaaaccaatataatgttacact
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999999999999999999999999999999999 222 3333333333 222222222 1111 11111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 111111 111111111111111 44444444444444444444444444 1111111 1111111111111
lowQualScore : 1 66666666666666666666666666666666666666666666666666666666666 444 3 0 1 99 5 1 77 5555555555 3 1 22 222222222 33 2222 99999999999 5 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 00 8 3 2 111111 4 777 4 4 8 55 555555555555555 0 3 7777 66666666666666666666666666 55 7777 1 1 22 8888888 4 0 444 777777 0 3333333333333 5555 33 0
lowQualScore : . ........................................................... ... . . . .. . . .. .......... . . .. ......... .. .... ........... . . ................................................................................... . . .. . . . ...... . ... . . . .. ............... . . .... .......................... .. .... . . .. ....... . . ... ...... . ............. .... .. .
lowQualScore : 2 22222222222222222222222222222222222222222222222222222222222 000 2 2 0 22 7 7 99 4444444444 0 7 11 999999999 11 1111 44444444444 0 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 9 99 9 9 5 555555 0 000 0 0 0 55 222222222222222 4 6 7777 99999999999999999999999999 00 1111 6 2 88 9999999 8 9 111 222222 5 8888888888888 7777 99 5
consensus : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
Reference ( family-226 ) : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATATANGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAANA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
gi|1 : AACTGTCACGTACTTTAGAGGTCAAAATTAGCTG---ACAGGGAAGAT--TCCTTG-TCAGATATTG---AAACTATTTCATT-CCGTAGTCCACTTAAAAT-GGTTATACTTGGAAAATATAGATTG--ATAAGGAAGAT-TTCTTTTCAAAT--AATA---------TTTCCTTCCGTAGTGCAC---------TTATATA----CTTG----G----A-AATGTTA-ACACTTTTGTTAATACAAACATCAA----G----------G-------ATGC---------------ATA--------------TTG------A-A---------C--ATTCGGAGATT-TTGACATTGAAACTTA------TTCCAT-GTAA---CAATGT-AA-AG-A--TAA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGG---------TTATTGTG--TGAAGTAATAAAAT----AAATCAGTAAACCAGACTATGTAAAAAAA----CAAGCTAAAAGCT--CTATAGACCAGAAACT------TCTCTAAACAGAACTT-------------TTT----GC--TCGGTCCCGAGGTTTTCCAGTTTACAGAGGTCGCGCTGTA
gi|10 : AAAAATA----CAG--TGAAACCT--TTATAAACTGGAAACC------TTTCTAA-CCAGACTT-------------TTT----GT--TTGGTCCTGAGGTTGTCTGGTTTACGGAGGTTACACTGTA
gi|11 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcacaaaCA------TC-------TCATACCCCTAT-CA----TTGT----------------A---------CTAT-------GAAGGCATAAACT----TGATCAGGAAATCATTTTTAGT---AATAT---CTAGCTAAAATCTAGCTATAAATCAGAAACC------TCTCTAAACCAGACTT-------------TTT----GT--TTGGTTATGAGGTTGTCCGGTTTACAAAGGTTGCACgt
gi|12 : ctcacaatacgggagagttcacatgtctgcttattaAAAACAAGTATTAA----T----------G-------A--C---------------AT-----------------G------G-A---------A--ATT-----ACT-TTT-CAGTGAAA---A------T-AAAT-GT-G---CACTGT-AA-AGGA--TCA------TC-------TCATTCTACCAT-TA----TTGTT------------CTGG---------AAATTGTG--TGAAGTAATAACAT----TAATCCAGAAATAAGA
gi|13 : atatttgattttaattgattgatgATAAAAT----TGATCAAGAAATCTGATTTAG--AAAACA----GAAGCTAAAATCT--CT-----------------------TTAAACCAGACTT-------------TTT----GT--TTGGT-TTGAGGTTGTCCAGTTCAGGGAGGTTACAC
gi|14 : ----CAAGTTAAAACCT--CGGTAAACCGGAACGA------TTTGTAAACCAGACTT-------------TTT----GT--TCAGTCCCGAGGTTGTCCGGTTTACGAAGGTTAAACTAT
gi|15 : gtattgtatttAAG-TGAAACTT--CTGTAAACCGGACAC-------TATATAAACCAGACAT-------------TTT----GT--TTGGTCCTGAGGTTGTCCGGTTTACTGAGGTTACACTGTA
gi|16 : CC------TCTCTAAACCAGACTT-------------CGT----AT--TAGGTCTCAAGATTGTCTGGTTTACGGAGATa
gi|17 : TGAAACCT--CCATAAACTGGACA-C------TCTGTAAACCGGACAT-------------TTT----aagattgca
gi|2 : AACTGCCATGTATTTCAGAGATCAGTATAAGCTG---C---------T--TCCTTT-TCAGATATT---------AT---ATT---GTAGTGCACTTAAAATAG-TTATATTTGGAAAATACAAGCTG--ATAGGGAAGAT-TGCTTTTCAGAT--AATATTGAAAATATTTCCTTCCATTGTGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACATTTTTGTTAATACAAACATCAA----G----------G----------------------------A--------------TTG------A-A---------A--ATTCAGAGA-T-TTTACA-TGAAACTTA------TTGCAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGT---------CTATTGTG--TGAAGGCATAAAA-----TAATC-AGGAATCAGGT-------AGATA----CAAGCTAAAACCT--TTATAAACCGGAAACC------TCTCTAAATCGAACTTTGTGAAATCGAACTTT----GTAATTGGTCCTGGGGTTATCCAGCTTACAGAGGTTGa
gi|3 : AATTGCCATGTACTTCAGAGATTAATACGAGCTG---A--------------CTTC-T---ATAATGTACAAAATA----ATTGCCAT---GTACTTCAGAG-A-TCA----------ATACGAGCTG--ACAGGGAAGAT-TCTGTTTCAGTA--AATTTTGAAAAG------TTCTGGTGTGCACATAAAGTTGTTATACATAGTCTGG----GTGTGA-AATGTTTTACACTTT-GTTAATACAAATATCAAATCTG----------G-------AT-CTACATCTTCACAC--ATA--------------TGG------A-A---------A--GTTCAAA-ATTGTTTGCATT--AACTTA------TAACAT-GTAGTTGCATTTTTAA-AG-A--TCA------T---------------CTCAT-T-----------------------------------CT------------GGCATAAAAT----TGATCTAGAAATCAGATAAATTAAC--TA----TAAGCTAAAACC-------------G----C------TCT-TGAACCGGATGT-------------TTT----GT--TCGGTCCAGAGGTTGTCTGGTGTA-GTAGGTTACACTGTAg
gi|4 : AACTATAGTGAACATCAGAGATCAATATATGCTGTCAG-AGGGAAGATAGCCGTTTATTAAAAATTG---AATCT--------------------TTAAAAT-GCTTATACTTGt
gi|4 : tatagtgtacataatAATATATGCTGTCAGAGGGAAGATAGCCGTTT---ATTAAAAATTGAA------TCTTT--AAAATG--C---------TT--ATA----CTTGATTTG---AACAAT-TTT-ACACTTTTGTTTATACAAACATCAA----G----------T-------AT-atttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|4 : tatagtgtacataataactatagtgaacatcagagatcA--------------TTA------A-A---------A--GATCAGAG-TT-TTTGCATT-AAACTTA------TTACATTGTTG----ATT---------A--CCA------TC-------TCATTCTCCCGT-TA----TTGTC------------CTGC---------CCCTTGTT--TTAAGTCATAAAAT----TGATCCAGAAATCAGATTTAGTAAAA--A----CAAGCTGAAACCT--CTATAAACTGGAAACC------TCTCTAAACCAGACTT-------------Ttggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|5 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgcttatacttgatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgG--ATTGGGAAGAT-TATTTTTCAGAT--ACTATTACAATTATTTA-TTCCGTAGTGCAC---------TTGAATA----CTGG----G---AA-AATGTTT-AGACTTTTGCGAATACAAACATCAA----GTCTGAATCTCA-------AT-CTTATCATATACACGTATA--------------TTG------A-A---------CTTATTGA-AGATT-TTTACATTGAAACGTA------TTACTT-GTAT---CATTGT-AA-TG-A--CCA------TT-------GCATTATCCTAT-TA----TTGAC------------ATGG---------CTATTGTG--TAAAGAC--AAAAT----TGATCAAGAAACCAGATTACGTAAAAACAACCCCAAA-TATAA--T--ATATAAACCAGAAACC------TCTCTAAACCGAACAT-------------TTC----CT--TTGGTCGCGAGTTTGTCCCGTTTACAGATATTGCACTGT
gi|6 : AAGAT-TCTTTTTCCGAT--AATATTAAAAATAGTTCCTTTCGTAATGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACACTTT-ATAAATACAAACATCAA----G----------G-------ATGT---------------ATA--------------TTG------A-ATATATAGAAA--ACTCAGAGATG-TTTACATTGAAACTTA------TTTTAT-GTAG---TATTGT-AA-AG-G--CCA------TT-------TCATTCTCACAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGTATGAAAC----TAATCAGGAAACCAGATTAATTAAAA--A----CGAGGTAAAATCT---TATAAACCGGAAGCCTCTCTATCTCTAAACCGAACAT-------------TTT----GC--TCGGTCCCGAGATTGTCTAGTTTACGGTAATTTCACTGTA
gi|7 : GCTG--ATAGGGAAGAT-TCCTTTTCAG-T--AACATTGA-------------TGTA-TGG-----------TTATAT------TTG----G--------TGTAA-ATA-TTTTATTTATACAAACATCAA----A----------GTCGGGACAT-CG--------------ATA--------------TTACCATGCATA---------C--ATGTAAAAGTTATTTGCAT--AAACTTAAAATTGTTACAT-GTAG---CCTTGT-AGTAG-A--CTAACAAACTTGATCAGGCCATTCCCCAATGCA----TT----------------TAAAAAAAACAACTACTGTACATAAAGGCACAAAAT----TTACCAAGAAATCATGTAAAGTAAAAATC----CAA--T--------------------AAACC------TCTCTAAACTAGACTT-------------ATT----GC--TT--------GGTTGTCTGGTTTACAAAGGTcataaa
gi|8 : tcaT-AAACTTCTGTTGATACAAACAT--A----GCCTC------G-------AC-C---------------TTAACTTTAACTCACTTTTGT-----A-A---------A--ATTCAGAGCTT-TTTTCATT-AAACGTA------TTGCAT-AGAA---CATTGT-AA-AATA--TTA------TT-------TTATAC-CCCAA-TAAGGGTTGTTATTAGAATTACATTGG---------TGATTGTG--TGAACACATCAAAT----T-ATCAAGAAATTCGAATAAGTAAAAA------CAAATTAAA-CAT--CTATAAACCGGAATCA------TTGCTTAACCGGACGT-------------TTTATTCGT--TCGGTCCCAAGGTTGTCCGGTaacagtg
gi|9 : TTGCATT-AAACTTA------TTACAT-GTAT---CATTGT-AA-AG-AGACCA------AT-------TTAGTCTCCTAT-AA----TTGTTATAAGAACTACTCTGG---------CTATTGTG--TGAAGGC-TGACATGGTATGATGAAGAAGTTAGATAAAGTAATAACAGTGTCAAGCTAAA-TCT--CTATAAACTGAAAATC------TCTCTGAACCGGACTT-------------TAT----GT--TCAATACCGAAGTTTTCCATTTTaaaccaatataatgttacact
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999999999999999999999999999999999 222 3333333333 222222222 1111 11111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 111111 111111111111111 44444444444444444444444444 1111111 1111111111111
lowQualScore : 1 66666666666666666666666666666666666666666666666666666666666 444 3 0 99 5 1 77 5555555555 3 1 22 222222222 33 2222 99999999999 5 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 00 8 3 2 111111 4 777 4 4 8 55 555555555555555 0 3 7777 66666666666666666666666666 55 7777 1 1 22 7777777 4 0 444 777777 0 3333333333333 5555 33 0
lowQualScore : . ........................................................... ... . . .. . . .. .......... . . .. ......... .. .... ........... . . ................................................................................... . . .. . . . ...... . ... . . . .. ............... . . .... .......................... .. .... . . .. ....... . . ... ...... . ............. .... .. .
lowQualScore : 2 22222222222222222222222222222222222222222222222222222222222 000 2 2 22 7 7 99 4444444444 0 7 11 999999999 11 1111 44444444444 0 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 9 99 9 9 5 555555 0 000 0 0 0 55 222222222222222 4 6 7777 99999999999999999999999999 00 1111 6 2 88 3333333 8 9 111 222222 5 8888888888888 7777 99 5
consensus : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
Reference ( family-226 ) : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
gi|1 : AACTGTCACGTACTTTAGAGGTCAAAATTAGCTG---ACAGGGAAGAT--TCCTTG-TCAGATATTG---AAACTATTTCATT-CCGTAGTCCACTTAAAAT-GGTTATACTTGGAAAATATAGATTG--ATAAGGAAGAT-TTCTTTTCAAAT--AATA---------TTTCCTTCCGTAGTGCAC---------TTATATA----CTTG----G----A-AATGTTA-ACACTTTTGTTAATACAAACATCAA----G----------G-------ATGC---------------ATA--------------TTG------A-A---------C--ATTCGGAGATT-TTGACATTGAAACTTA------TTCCAT-GTAA---CAATGT-AA-AG-A--TAA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGG---------TTATTGTG--TGAAGTAATAAAAT----AAATCAGTAAACCAGACTATGTAAAAAAA----CAAGCTAAAAGCT--CTATAGACCAGAAACT------TCTCTAAACAGAACTT-------------TTT----GC--TCGGTCCCGAGGTTTTCCAGTTTACAGAGGTCGCGCTGTA
gi|10 : AAAAATA----CAG--TGAAACCT--TTATAAACTGGAAACC------TTTCTAA-CCAGACTT-------------TTT----GT--TTGGTCCTGAGGTTGTCTGGTTTACGGAGGTTACACTGTA
gi|11 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcacaaaCA------TC-------TCATACCCCTAT-CA----TTGT----------------A---------CTAT-------GAAGGCATAAACT----TGATCAGGAAATCATTTTTAGT---AATAT---CTAGCTAAAATCTAGCTATAAATCAGAAACC------TCTCTAAACCAGACTT-------------TTT----GT--TTGGTTATGAGGTTGTCCGGTTTACAAAGGTTGCACgt
gi|12 : ctcacaatacgggagagttcacatgtctgcttattaAAAACAAGTATTAA----T----------G-------A--C---------------AT-----------------G------G-A---------A--ATT-----ACT-TTT-CAGTGAAA---A------T-AAAT-GT-G---CACTGT-AA-AGGA--TCA------TC-------TCATTCTACCAT-TA----TTGTT------------CTGG---------AAATTGTG--TGAAGTAATAACAT----TAATCCAGAAATAAGA
gi|13 : atatttgattttaattgattgatgATAAAAT----TGATCAAGAAATCTGATTTAG--AAAACA----GAAGCTAAAATCT--CT-----------------------TTAAACCAGACTT-------------TTT----GT--TTGGT-TTGAGGTTGTCCAGTTCAGGGAGGTTACAC
gi|14 : ----CAAGTTAAAACCT--CGGTAAACCGGAACGA------TTTGTAAACCAGACTT-------------TTT----GT--TCAGTCCCGAGGTTGTCCGGTTTACGAAGGTTAAACTAT
gi|15 : gtattgtatttAAG-TGAAACTT--CTGTAAACCGGACAC-------TATATAAACCAGACAT-------------TTT----GT--TTGGTCCTGAGGTTGTCCGGTTTACTGAGGTTACACTGTA
gi|16 : CC------TCTCTAAACCAGACTT-------------CGT----AT--TAGGTCTCAAGATTGTCTGGTTTACGGAGATa
gi|17 : TGAAACCT--CCATAAACTGGACA-C------TCTGTAAACCGGACAT-------------TTT----aagattgca
gi|2 : AACTGCCATGTATTTCAGAGATCAGTATAAGCTG---C---------T--TCCTTT-TCAGATATT---------AT---ATT---GTAGTGCACTTAAAATAG-TTATATTTGGAAAATACAAGCTG--ATAGGGAAGAT-TGCTTTTCAGAT--AATATTGAAAATATTTCCTTCCATTGTGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACATTTTTGTTAATACAAACATCAA----G----------G----------------------------A--------------TTG------A-A---------A--ATTCAGAGA-T-TTTACA-TGAAACTTA------TTGCAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGT---------CTATTGTG--TGAAGGCATAAAA-----TAATC-AGGAATCAGGT-------AGATA----CAAGCTAAAACCT--TTATAAACCGGAAACC------TCTCTAAATCGAACTTTGTGAAATCGAACTTT----GTAATTGGTCCTGGGGTTATCCAGCTTACAGAGGTTGa
gi|3 : AATTGCCATGTACTTCAGAGATTAATACGAGCTG---A--------------CTTC-T---ATAATGTACAAAATA----ATTGCCAT---GTACTTCAGAG-A-TCA----------ATACGAGCTG--ACAGGGAAGAT-TCTGTTTCAGTA--AATTTTGAAAAG------TTCTGGTGTGCACATAAAGTTGTTATACATAGTCTGG----GTGTGA-AATGTTTTACACTTT-GTTAATACAAATATCAAATCTG----------G-------AT-CTACATCTTCACAC--ATA--------------TGG------A-A---------A--GTTCAAA-ATTGTTTGCATT--AACTTA------TAACAT-GTAGTTGCATTTTTAA-AG-A--TCA------T---------------CTCAT-T-----------------------------------CT------------GGCATAAAAT----TGATCTAGAAATCAGATAAATTAAC--TA----TAAGCTAAAACC-------------G----C------TCT-TGAACCGGATGT-------------TTT----GT--TCGGTCCAGAGGTTGTCTGGTGTA-GTAGGTTACACTGTAg
gi|4 : AACTATAGTGAACATCAGAGATCAATATATGCTGTCAG-AGGGAAGATAGCCGTTTATTAAAAATTG---AATCT--------------------TTAAAAT-GCTTATACTTGt
gi|4 : tatagtgtacataatAATATATGCTGTCAGAGGGAAGATAGCCGTTT---ATTAAAAATTGAA------TCTTT--AAAATG--C---------TT--ATA----CTTGATTTG---AACAAT-TTT-ACACTTTTGTTTATACAAACATCAA----G----------T-------AT-atttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|4 : tatagtgtacataataactatagtgaacatcagagatcA--------------TTA------A-A---------A--GATCAGAG-TT-TTTGCATT-AAACTTA------TTACATTGTTG----ATT---------A--CCA------TC-------TCATTCTCCCGT-TA----TTGTC------------CTGC---------CCCTTGTT--TTAAGTCATAAAAT----TGATCCAGAAATCAGATTTAGTAAAA--A----CAAGCTGAAACCT--CTATAAACTGGAAACC------TCTCTAAACCAGACTT-------------Ttggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|5 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgcttatacttgatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgG--ATTGGGAAGAT-TATTTTTCAGAT--ACTATTACAATTATTTA-TTCCGTAGTGCAC---------TTGAATA----CTGG----G---AA-AATGTTT-AGACTTTTGCGAATACAAACATCAA----GTCTGAATCTCA-------AT-CTTATCATATACACGTATA--------------TTG------A-A---------CTTATTGA-AGATT-TTTACATTGAAACGTA------TTACTT-GTAT---CATTGT-AA-TG-A--CCA------TT-------GCATTATCCTAT-TA----TTGAC------------ATGG---------CTATTGTG--TAAAGAC--AAAAT----TGATCAAGAAACCAGATTACGTAAAAACAACCCCAAA-TATAA--T--ATATAAACCAGAAACC------TCTCTAAACCGAACAT-------------TTC----CT--TTGGTCGCGAGTTTGTCCCGTTTACAGATATTGCACTGT
gi|6 : AAGAT-TCTTTTTCCGAT--AATATTAAAAATAGTTCCTTTCGTAATGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACACTTT-ATAAATACAAACATCAA----G----------G-------ATGT---------------ATA--------------TTG------A-ATATATAGAAA--ACTCAGAGATG-TTTACATTGAAACTTA------TTTTAT-GTAG---TATTGT-AA-AG-G--CCA------TT-------TCATTCTCACAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGTATGAAAC----TAATCAGGAAACCAGATTAATTAAAA--A----CGAGGTAAAATCT---TATAAACCGGAAGCCTCTCTATCTCTAAACCGAACAT-------------TTT----GC--TCGGTCCCGAGATTGTCTAGTTTACGGTAATTTCACTGTA
gi|7 : AGCTG--ATAGGGAAGAT-TCCTTTTCAG-T--AACATTGA-------------TGTA-TGG-----------TTATAT------TTG----G--------TGTAA-ATA-TTTTATTTATACAAACATCAA----A----------GTCGGGACAT-CG--------------ATA--------------TTACCATGCATA---------C--ATGTAAAAGTTATTTGCAT--AAACTTAAAATTGTTACAT-GTAG---CCTTGT-AGTAG-A--CTAACAAACTTGATCAGGCCATTCCCCAATGCA----TT----------------TAAAAAAAACAACTACTGTACATAAAGGCACAAAAT----TTACCAAGAAATCATGTAAAGTAAAAATC----CAA--T--------------------AAACC------TCTCTAAACTAGACTT-------------ATT----GC--TT--------GGTTGTCTGGTTTACAAAGGTcataaa
gi|8 : tcT-AAACTTCTGTTGATACAAACAT--A----GCCTC------G-------AC-C---------------TTAACTTTAACTCACTTTTGT-----A-A---------A--ATTCAGAGCTT-TTTTCATT-AAACGTA------TTGCAT-AGAA---CATTGT-AA-AATA--TTA------TT-------TTATAC-CCCAA-TAAGGGTTGTTATTAGAATTACATTGG---------TGATTGTG--TGAACACATCAAAT----T-ATCAAGAAATTCGAATAAGTAAAAA------CAAATTAAA-CAT--CTATAAACCGGAATCA------TTGCTTAACCGGACGT-------------TTTATTCGT--TCGGTCCCAAGGTTGTCCGGTaacagtg
gi|9 : TTGCATT-AAACTTA------TTACAT-GTAT---CATTGT-AA-AG-AGACCA------AT-------TTAGTCTCCTAT-AA----TTGTTATAAGAACTACTCTGG---------CTATTGTG--TGAAGGC-TGACATGGTATGATGAAGAAGTTAGATAAAGTAATAACAGTGTCAAGCTAAA-TCT--CTATAAACTGAAAATC------TCTCTGAACCGGACTT-------------TAT----GT--TCAATACCGAAGTTTTCCATTTTaaaccaatataatgttacact
blockSeqs : A TCAGAGGGAAGATAGCCGTTTATTAAAAATTGAATCT AG T TC A A TA AAATATTTCC C G CA ATAAAGTTG AA TAGT ATTTGAAC T T GTCTGAATCTCAATCTTATCATATACACGTATATTGAACTT G G A G AAATTG T TTG T T G GA ACAAACTTGATCAGG G AGGG TATTAGAATTACATTGG CA GGTA G A TT ACAACCC C AGC TCTCTA TGTGAAATCGAAC ATTC AA
blockSeqs : G ACTTCTATAATGTACAAAATAATTGCCATGT GC T . . T . AAATAGTTCC C G CA . AT . GTGTGA . T GCCTCGACCTTAACTTTAACTCACTTTTGTAAA A A G G . . . . . T . TC . . TATAAGAACTACTCTGG . . A C TT ACAGTGT C T . . . .
blockSeqs : A CTTCCTTTTCAGATATTATATTGTAGTGC A . . . A . AATTATTTA C A CA . GA . GAA . T ATCTGGATCTACATCTTCACACATATGGAAA G . G G . . . . . . . TC . . TAAAAAAAACAA . . G A AA ATAT T C . . . .
blockSeqs : . . A . AAAG T G CA . AA . GAA . T AGTCGGGACATCGATATTACCATGCATAC G . A G . . . . . . . TT . . TCTGG . . A T TT ATA C C . . . .
blockSeqs : . . A . ATCT . A G . AT . GAA . T GGATGTATATTGAATATATAGAAA A . A . . . . . . . . TC . . CCTGT . . G C TA ACA C C . . . .
blockSeqs : . . . . . . . . . . G . . TGACATGGAA G . G . . . . . . . . TT . . CCTGC . . G A TA ATA C C . . . .
blockSeqs : . . GGATTGAAA . . T . . . . . . . . TT . . CATGG . . G A AA ATC G T . . . .
blockSeqs : . . G . . . . . . . . TT . . CCTGG . . A A TA TA T C . . . .
blockSeqs : . . . . . . . . . AT . . A . . T A AA A C A . . . .
blockSeqs : T . . . . . G A . A . C . . . .
blockSeqs : . . . A . C . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : AAATATTCN* GAA********
originalCons : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTTCCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
finalCons : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGAT--AATATTGAAAATATTCN-TTCCGTAGTGCAC---------TTANATA----CTTGGAA--------AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 99999999999999999999999999999999999999999999999999999999999 222 333333333333333 222222222 1111 11111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 111111 111111111111111 44444444444444444444444444 1111111 1111111111111
lowQualScore : 1 66666666666666666666666666666666666666666666666666666666666 444 3 0 99 5 5 333333333333333 3 1 22 222222222 33 2222 99999999999 5 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 00 8 3 33 111111 4 777 4 4 8 55 555555555555555 0 3 7777 66666666666666666666666666 55 7777 1 1 22 7777777 4 0 444 777777 0 3333333333333 5555 33 0
lowQualScore : . ........................................................... ... . . .. . . ............... . . .. ......... .. .... ........... . . ................................................................................... . . .. . . .. ...... . ... . . . .. ............... . . .... .......................... .. .... . . .. ....... . . ... ...... . ............. .... .. .
lowQualScore : 2 22222222222222222222222222222222222222222222222222222222222 000 2 2 22 7 1 444444444444444 0 7 11 999999999 11 1111 44444444444 0 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 9 99 9 9 33 555555 0 000 0 0 0 55 222222222222222 4 6 7777 99999999999999999999999999 00 1111 6 2 88 3333333 8 9 111 222222 5 8888888888888 7777 99 5
consensus : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGATAATATTGAAAAT--A-TT-CCTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
Reference ( family-226 ) : AACTGCCATGTACTTCAGAGATCAATATAAGCTG---A-AGGGAAGAT--TCCTTT-TCAGATATTG---AAACTAT---ATT-CCGTAGTGCACTTAAAAT-G-TTATACTTGGAAAATACAAGCTG--ATAGGGAAGAT-TCCTTTTCAGATAATATTGAAAAT--A-TT-CNTTCCGTAGTGCAC---------TTANATA----CTTG----G---AA-AATGTTT-ACACTTTTGTTAATACAAACATCAA----G----------G-------AT-C---------------ATA--------------TTG------A-A---------A--ATTCAGAGATT-TTTGCATTGAAACTTA------TTACAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TCATTCTCCCAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGCATAAAAT----TGATCAAGAAATCAGATTAAGTAAAAATA----CAAGCTAAAACCT--CTATAAACCGGAAACC------TCTCTAAACCGGACTT-------------TTT----GT--TCGGTCCCGAGGTTGTCCGGTTTACGGAGGTTGCACTGTA
gi|1 : AACTGTCACGTACTTTAGAGGTCAAAATTAGCTG---ACAGGGAAGAT--TCCTTG-TCAGATATTG---AAACTATTTCATT-CCGTAGTCCACTTAAAAT-GGTTATACTTGGAAAATATAGATTG--ATAAGGAAGAT-TTCTTTTCAAATAATATT-----------T-CCTTCCGTAGTGCAC---------TTATATA----CTTG----G----A-AATGTTA-ACACTTTTGTTAATACAAACATCAA----G----------G-------ATGC---------------ATA--------------TTG------A-A---------C--ATTCGGAGATT-TTGACATTGAAACTTA------TTCCAT-GTAA---CAATGT-AA-AG-A--TAA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGG---------TTATTGTG--TGAAGTAATAAAAT----AAATCAGTAAACCAGACTATGTAAAAAAA----CAAGCTAAAAGCT--CTATAGACCAGAAACT------TCTCTAAACAGAACTT-------------TTT----GC--TCGGTCCCGAGGTTTTCCAGTTTACAGAGGTCGCGCTGTA
gi|10 : AAAAATA----CAG--TGAAACCT--TTATAAACTGGAAACC------TTTCTAA-CCAGACTT-------------TTT----GT--TTGGTCCTGAGGTTGTCTGGTTTACGGAGGTTACACTGTA
gi|11 : tatcaaggatttaaaggtcacacaatcatttgaagagtttgaactatttctttctttatttaattgactcatattgtttaagacagtgtttattcccactctcacaaaCA------TC-------TCATACCCCTAT-CA----TTGT----------------A---------CTAT-------GAAGGCATAAACT----TGATCAGGAAATCATTTTTAGT---AATAT---CTAGCTAAAATCTAGCTATAAATCAGAAACC------TCTCTAAACCAGACTT-------------TTT----GT--TTGGTTATGAGGTTGTCCGGTTTACAAAGGTTGCACgt
gi|12 : ctcacaatacgggagagttcacatgtctgcttattaAAAACAAGTATTAA----T----------G-------A--C---------------AT-----------------G------G-A---------A--ATT-----ACT-TTT-CAGTGAAA---A------T-AAAT-GT-G---CACTGT-AA-AGGA--TCA------TC-------TCATTCTACCAT-TA----TTGTT------------CTGG---------AAATTGTG--TGAAGTAATAACAT----TAATCCAGAAATAAGA
gi|13 : atatttgattttaattgattgatgATAAAAT----TGATCAAGAAATCTGATTTAG--AAAACA----GAAGCTAAAATCT--CT-----------------------TTAAACCAGACTT-------------TTT----GT--TTGGT-TTGAGGTTGTCCAGTTCAGGGAGGTTACAC
gi|14 : ----CAAGTTAAAACCT--CGGTAAACCGGAACGA------TTTGTAAACCAGACTT-------------TTT----GT--TCAGTCCCGAGGTTGTCCGGTTTACGAAGGTTAAACTAT
gi|15 : gtattgtatttAAG-TGAAACTT--CTGTAAACCGGACAC-------TATATAAACCAGACAT-------------TTT----GT--TTGGTCCTGAGGTTGTCCGGTTTACTGAGGTTACACTGTA
gi|16 : CC------TCTCTAAACCAGACTT-------------CGT----AT--TAGGTCTCAAGATTGTCTGGTTTACGGAGATa
gi|17 : TGAAACCT--CCATAAACTGGACA-C------TCTGTAAACCGGACAT-------------TTT----aagattgca
gi|2 : AACTGCCATGTATTTCAGAGATCAGTATAAGCTG---C---------T--TCCTTT-TCAGATATT---------AT---ATT---GTAGTGCACTTAAAATAG-TTATATTTGGAAAATACAAGCTG--ATAGGGAAGAT-TGCTTTTCAGATAATATTGAAAAT--A-TTTCCTTCCATTGTGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACATTTTTGTTAATACAAACATCAA----G----------G-------AT-----------------------------------TG------A-A---------A--ATTCAGAGATT-TT-ACAT-GAAACTTA------TTGCAT-GTAG---CATTGT-AA-AG-A--CCA------TT-------TTATTCTCCCAT-TA----TTGTC------------CTGT---------CTATTGTG--TGAAGGCATAAAA-----TAATC-AGGAATCAGGT-------AGATA----CAAGCTAAAACCT--TTATAAACCGGAAACC------TCTCTAAATCGAACTTTGTGAAATCGAACTTT----GTAATTGGTCCTGGGGTTATCCAGCTTACAGAGGTTGa
gi|3 : AATTGCCATGTACTTCAGAGATTAATACGAGCTG---A--------------CTTC-T---ATAATGTACAAAATA----ATTGCCAT---GTACTTCAGAG-A-TCA----------ATACGAGCTG--ACAGGGAAGAT-TCTGTTTCAGTAAATTTTGAAAA---------GTTCTGGTGTGCACATAAAGTTGTTATACATAGTCTGG----GTGTGA-AATGTTTTACACTTT-GTTAATACAAATATCAAATCTG----------G-------AT-CTACATCTTCACAC--ATA--------------TGG------A-A---------A--GTTCAAA-ATTGTTTGCATT--AACTTA------TAACAT-GTAGTTGCATTTTTAA-AG-A--TCA------T---------------CTCAT-T-----------------------------------CT------------GGCATAAAAT----TGATCTAGAAATCAGATAAATTAAC--TA----TAAGCTAAAACC-------------G----C------TCT-TGAACCGGATGT-------------TTT----GT--TCGGTCCAGAGGTTGTCTGGTGTA-GTAGGTTACACTGTAg
gi|4 : AACTATAGTGAACATCAGAGATCAATATATGCTGTCAG-AGGGAAGATAGCCGTTTATTAAAAATTG---AATCT--------------------TTAAAAT-GCTTATACTTGt
gi|4 : tatagtgtacataatAATATATGCTGTCAGAGGGAAGATAGCCGTT--------TATTAAAAATTGA-AT-CTTT--AAAATG--C---------TT--ATA----CTTGATTTG---AACAAT-TTT-ACACTTTTGTTTATACAAACATCAA----G----------T-------AT-atttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|4 : tatagtgtacataataactatagtgaacatcagagatcA--------------TTA------A-A---------A--GATCAGAG-TT-TTTGCATT-AAACTTA------TTACATTGTTG----ATT---------A--CCA------TC-------TCATTCTCCCGT-TA----TTGTC------------CTGC---------CCCTTGTT--TTAAGTCATAAAAT----TGATCCAGAAATCAGATTTAGTAAAA--A----CAAGCTGAAACCT--CTATAAACTGGAAACC------TCTCTAAACCAGACTT-------------Ttggccttagttttaacacaactatatacatttatattgaataaactgattaaaagatcagagtttttgcattaaacttattacattgttgattaccatctcattctcccgttattgtcctgccccttgttttaagtcataaaattgatccagaaatcagatttagtaaaaacaagctgaaacctctataaactggaaacctctctaaaccagacttt
gi|5 : tatagtgtacataataactatagtgaacatcagagatcaatatatgctgtcagagggaagatagccgtttattaaaaattgaatctttaaaatgcttatacttgatttgaacaattttacacttttgtttatacaaacatcaagtattggccttagttttaacacaactatatacatttatattgaataaactgG--ATTGGGAAGAT-TATTTTTCAGATACTATTACAATT--A-TT-TATTCCGTAGTGCAC---------TTGAATA----CTGG----G---AA-AATGTTT-AGACTTTTGCGAATACAAACATCAA----GTCTGAATCTCA-------AT-CTTATCATATACACGTATA--------------TTG------A-A---------CTTATTGA-AGATT-TTTACATTGAAACGTA------TTACTT-GTAT---CATTGT-AA-TG-A--CCA------TT-------GCATTATCCTAT-TA----TTGAC------------ATGG---------CTATTGTG--TAAAGAC--AAAAT----TGATCAAGAAACCAGATTACGTAAAAACAACCCCAAA-TATAA--T--ATATAAACCAGAAACC------TCTCTAAACCGAACAT-------------TTC----CT--TTGGTCGCGAGTTTGTCCCGTTTACAGATATTGCACTGT
gi|6 : AAGAT-TCTTTTTCCGATAATATTAAAAAT--AGTT-CCTTTCGTAATGCAC---------TTAAATA----CTTG----G---AA-AATGTTT-ACACTTT-ATAAATACAAACATCAA----G----------G-------ATGT---------------ATA--------------TTG------A-ATATATAGAAA--ACTCAGAGATG-TTTACATTGAAACTTA------TTTTAT-GTAG---TATTGT-AA-AG-G--CCA------TT-------TCATTCTCACAT-TA----TTGTC------------CTGG---------CTATTGTG--TGAAGGTATGAAAC----TAATCAGGAAACCAGATTAATTAAAA--A----CGAGGTAAAATCT---TATAAACCGGAAGCCTCTCTATCTCTAAACCGAACAT-------------TTT----GC--TCGGTCCCGAGATTGTCTAGTTTACGGTAATTTCACTGTA
gi|7 : AGCTG--ATAGGGAAGAT-TCCTTTTCAG-TAACATTGA----------------TGTA-TGG-----------TTATAT------TTG----G--------TGTAA-ATA-TTTTATTTATACAAACATCAA----A----------GTCGGGACAT-CG--------------ATA--------------TTACCATGCATA---------C--ATGTAAAAGTTATTTGCAT--AAACTTAAAATTGTTACAT-GTAG---CCTTGT-AGTAG-A--CTAACAAACTTGATCAGGCCATTCCCCAATGCA----TT----------------TAAAAAAAACAACTACTGTACATAAAGGCACAAAAT----TTACCAAGAAATCATGTAAAGTAAAAATC----CAA--T--------------------AAACC------TCTCTAAACTAGACTT-------------ATT----GC--TT--------GGTTGTCTGGTTTACAAAGGTcataaa
gi|8 : tcT-AAACTTCTGTTGATACAAACAT--A----GCCTC------G-------AC-C---------------TTAACTTTAACTCACTTTTGT-----A-A---------A--ATTCAGAGCTT-TTTTCATT-AAACGTA------TTGCAT-AGAA---CATTGT-AA-AATA--TTA------TT-------TTATAC-CCCAA-TAAGGGTTGTTATTAGAATTACATTGG---------TGATTGTG--TGAACACATCAAAT----T-ATCAAGAAATTCGAATAAGTAAAAA------CAAATTAAA-CAT--CTATAAACCGGAATCA------TTGCTTAACCGGACGT-------------TTTATTCGT--TCGGTCCCAAGGTTGTCCGGTaacagtg
gi|9 : TTGCATT-AAACTTA------TTACAT-GTAT---CATTGT-AA-AG-AGACCA------AT-------TTAGTCTCCTAT-AA----TTGTTATAAGAACTACTCTGG---------CTATTGTG--TGAAGGC-TGACATGGTATGATGAAGAAGTTAGATAAAGTAATAACAGTGTCAAGCTAAA-TCT--CTATAAACTGAAAATC------TCTCTGAACCGGACTT-------------TAT----GT--TCAATACCGAAGTTTTCCATTTTaaaccaatataatgttacact