lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 11 11111111111111 222 1 33333 99999999999999999999999999999999999 11 3333 11 1 11111 1111 9999999999999999999999999999999999999999999999 1111111 1111111 11 1 1 1111 1 11
lowQualScore : 1 5 5 5555 0 0 444 2 33 11 99999999999999 3 3 555 7 0 111 1 2 6 4 4 7 66666 55555555555555555555555555555555555 00 88 5555 2 66 9 2 6 6 3 3 55555 3 2 6666 8888888888888888888888888888888888888888888888 4 3333333 3333333 4 55 66 2 66 3 4 99 0000 66 3 3 5 7 3 6 1 9 5 77 11 0
lowQualScore : . . . .... . . ... . .. .. .............. . . ... . . ... . . . . . . ..... ................................... .. .. .... . .. . . . . . . ..... . . .... .............................................. . ....... ....... . .. .. . .. . . .. .... .. . . . . . . . . . .. .. .
lowQualScore : 6 1 3 0000 5 2 111 0 77 77 66666666666666 1 1 444 3 5 999 2 7 8 5 3 0 55555 22222222222222222222222222222222222 22 99 4444 2 55 2 3 0 7 3 6 99999 6 8 0000 2222222222222222222222222222222222222222222222 0 0000000 0000000 6 66 11 8 11 9 1 11 6666 00 5 0 0 6 9 7 0 5 4 77 00 8
consensus : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A--AAAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGC-G-GCCGGCACAGCAATGGGAAT------------------CAC-AG-----A-----AACTACTTGTTGCTGGACCCCTACAGACTAGAATAAGAG---TGTTGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TT-CTGCNACGCCGGCAGGTAGGC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGG--GCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGG-CTG----GGGTGAAATACTGGCTGGCTGGNATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTTTGGTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGCATGGAGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
Reference ( gi|5 ) : CATCTACATTGTACGTCTACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A--AAAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAGGAATAAAGTGTGTCCAGCTACGTTTTCACTTCTTTAACCCAGTCCTCTCTGGATACGGTGGCC-C-A-GCCGGCACAGCAATGGGAAT------------------C----------A-----AACTATTTGTTGCTGGACCCCTACGAACTAGAATAAGA----TGTTGATAG--CC-C-TGCTTGAGGGATACCAAGTC-A-GGGG-C----GT-CTGCTAGGCTGGCAGGTAGGC----------------------TG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTGTAGG--GCTGGAGGAATTTCCTGG--AGTGGGAGGATCTTCTATGTCCTTGGG-TTG----GGGTGAGGTACTGGCAGACTGGTATGTCC-ACAAAGTTGTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTTTGGTCCGACGAGATTCTAGTGTCTCCCATCCCAGTTGATCTAGCATGGAGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
gi|8 : CATCTACATCATACAGCAACGCAGTCACACTTGACT----ACT----------TAG---------------A--AAAG---A-----TAA--TGAAATTATATAAAGTAATA-AGA-G---GTTGGATAGTTAAAA-GGTA-AAAA--TAAGAATAAAGTGTATCCAGCTACGTT--------TTTGGCCCAGTCCTCTCAAGTTATGGTGGCT-----GCCG---CAGCAACAGGAAT------------------CATATCACTAGA-----AACTACTTGTTGCTGGACGCCTACAGACTAGAATGAGAG---TGGTGACAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TT-CTGCAACACCAGCAGACAGGCAGTCCCATACTGTAGAAGTTTGTG----------------------GAA-A-------CAAT-------GAATTCTTGTAATATGATGTTGTTGTACATG--ACTGGCGGAATTTCCTGGACAGTAAGAGGATCTGGTATGGCCTTGGG-CTG----TGGTGAAATACTGGCAAGCTGGGATGTCC-ACAAGGTTGTT
gi|13 : CATCTACATTATACGTCGACACAGTCACACTTGACT----ATTACTTGATGGGTGG---TGCAAGGTTA--A--GAAG---AGA---TAT--TGAAAGGATAGACAGTAAGA-AAA-G---GTTGGATAGTTAAAA-GGTAGGAAA--TAGGAATTAAGTGTGTCCAGCTAAGTTTTCACCTCTTCAACCCAGTCCTCTCCGGTTATGATGGCC-
gi|11 : aaataacaagactgacaaaaaaattgtatcactaaaatgttctaCATCTACATCGTACATCGACACAGTCACACTTGACT----ATTACAGGAGGGGCGG---TGCATGGTCA--A--gc
gi|1 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttaCAT-TACATTAT--GTTGACACAGTCACACTTGACT----TTTATGCGACAGGTGG---T----GGTCA--A--AAAA---AAAGATTA---TGAATGGGTAGACAGTAAGA-AAA-G---GCTGGAgtgtgtcagctacctttttgtctcttcaacccattcctctccggttgcagtggcagcgaccggcacaacaatgggaatcactagaaactacttgttgctggacccctacaaactagaataagagtgttgatagcccctgcttgaaggacaccaagtcaggtgtgtctgctagggcggcaggttggctgttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|10 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatCATCTACATCATACATTGACTCGGTCACACTTGACT----ATTACATGGCCGGTGG---TGCTAGTT----A--AAAA---G-----TA----GAAAacccactcccatccagttgtggtgaccctggttgtcacagcaatgggaatactagaaactacttggtgtaaactacttgttggtggacccctacaaactagaatgagaatggtgatgggcactgcttgaaggataccaatttttggggcttctgcaacatcagcaggcaggctgttccatactgtagtaatttgtggaaagaatgtaatatgatgttgatgtagacagctggcggaaattcctggagtgagaggatctagtatggccctgggcagtccagagtgagatactggctagctgggatgtccacaaggtcattggtgatcttaaaatatcatggtctgctgagctttcaatgtctaccatccgtagtgattgttgttgtcgtatggtgtttagcgacgctatggtggtctaacatggaggagacactactggtgttgtgatatctgttgg
gi|15 : ctcttttctatagttccttgccttaacattaacatttaattacacttttCATTTGCATGATACATCAACCAAATCACACTTGACT----ATTACACGACAGGTGG---CGCTATGCCA--AG-AAAA---A-----AAG--TG--AGAATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAC-TATA-AACA--TAAGAATAAAATATGTCCAGCTACGTTTTCGCCTCTTtaagaataaaatgtgtccagataagttttgcctcttcagccgagtcctctctggtaacagtggccgaggtcggcacagcaatgggaatcactagaaactgtgtggctggacgcctacagactagaataagagttgtgacagcctctgcttgaagaataccaagtcggggggcttctgcaacatcagcaggcagactgttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|19 : aatatatctaCATTCACATCATACGTCAACGCAGTCACACTTGACT----ATTACACGACGGGTGG---TGCAAGGTCA--A--GAAAAATA-----TAT--TGAAAAGATCGACAGTAAGA-AGA-A---GTTGGATAc
gi|16 : ttagattaatagtagttgcttgacagctacatctaCATCTACATTATACGTGGACGCAGTGACACTTGACT----ATGAGACGACGGGTGG---TGCTAAGTGA--A--GAAACT-A-----TAT--TGAAAGGATAGGCAGT---T-AGA-G---GTTGGATAGT---AA-TGTAG
gi|22 : ggctactagtaagcgacaaaatcactgatagtccacggtctaCATCTACATTGTACGTCAACGCAGTCACACTTGACT----ATTACGCGACGGGgga
gi|4 : tcaaagtgagtcaaagatagttctattatttctatgttttctaATCTACATCGTACGTCGAC--AGTCACACTTGACT----ATTACGAGACGGGTGG---TGCAAGGTCA--A--AAAG---AGA---TAT--TGAAA------------AGA-AGA-G---GTTGGATAGTTAAAA-A-TAGAAAG--TAGGAATAAAGTGTGTCCAGCTATGTTTTCACCTCTTCAACCCAGTCCTCTTCGGTTACGGTGGCCGC-G-GCTGGCACAGCAAAGGGAAT------------------CACTAG-----A-----AACTACTTGTTGCTGGACCCTTACAAACTAAAATAAG-----TGTTGATAGC-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-T----GTGCTGCT--CCCGGCAGGTAGGCTGTTCCATACTAAAGTTGTTCGTG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTTGAGG--GCTGGTGGAATTACCTGG--AGTGGAAGGATCTTGTATGTCCCTGGG-CTG----GGGTGAGGTACTGGCTGACTGGTATGTCC-ACAAGGTCTTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTTTGGTCCAATGAGATTCTAGTGTCTCCCATCCCAGTTGGTCTAGCATGGAGAAGACACTACTGGTGTTGTAATATATCTGTCGGTCA
gi|17 : atctatATCTACATCATACATCGAC--AGTCACACTTGATT----ATTACATGAGGAGTGGACATGCCAGGTCA--AG-AAAA---A-----TATAATAAAAGGATAAATAG-AAGATAGA-GGTTGTTGGATAGTTAc
gi|18 : aaaaaaatggtaatcatctaaagttcatttacatctatATCTAAATCGTACGTCCACGCAGTCACACTGGACT----ATTATGGCATGGGTGG---TGta
gi|7 : acattagatatgtttaggatagtttcaatattgaaatgcacattgcataatatttacatttttTCTACATCGTATGCCGACACAGTCACACTTGACT----ATTACACAACAGGTGG---TGCAAGGTCA--GACAAAA---G-----TAA--TGAAAGGATAAACAGTAAGA-AGG-G---GTTGGATAGTTAAAA-TGTAGAAA---TAAGAATAATGTGTGTCCAGCTACGTTTACGCCCCTTCAACCCAGTCCATTTCAGTTACAGCGGCCGC-G-GCCAGCACAGCAATGGGAAT------------------CATTAG-----A-----AACTACTTGTTGTTGGA-CCCTGCAGACTAGAATAACAG---TATTGATAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----GT-CTGCTACATCGGCAGGTAGGCTGTTCCATACTGAAGTTGTTTGTG----------------------GAA-A-------GAAT-------GAATTTCTGTAGCATGATGTGGTTGTACAGG--ACTGGCGAAATTTCCTGG--A-TGTGAGGATCTTGTATGTTCCTGGGCTTG----GG--GAAATACTGGCTGACTGGTATGTCC-ACAAatgttaatacagacaaagggggtaat
gi|20 : CTACATCATGCACCAACACAGTCATACTTGACTTAATATTACATGACCCATGG---TGCTAGGTCA--AG-AAAA---A-----TATAATGAAAGGATAGACAGTAAGA-CGA-G---GTTGGGTAGTTAAA
gi|21 : CATTGTACGTCGGCGCAGTCACACTTAACT----ATTACGCGAT-GGTGT---TCAAAGGTC
gi|6 : aaatgccatctactacagtatctgctgcagtttttaacttaggtTCACACTTGA-------TTACGCGACGGGTGG---TGCAAGGTCA--A--GAAA---A-----GAT--TGAAAGGAT-GACAGTAAGA-AGA-T---GTTGGATAGAAAAAACGGTAAAAAAAATAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTACGGTTATGGTGGCCGC-G-GCCGGCACAGCAATGTGAAT------------------C----------ACTAGAAACGACGTGTTGCTGGTTCCC----------AATG-GA----TGTTGATAG--CC-CCTGCTTGAAGGATACCTGCTC-A-GGGG-C----TT-TTGCTACGCCGGCAGGTAGGC----------------------TGTTCCATACTGAAGTTGTCCGTAGAA-A-------GAAT-------GATTTTCTGTAGTATGATGTGGATGTAGAGG--GCTGGCGGAATTTCCTGG--AGTGGGAGGATCGTGTATGTCCCCGAG-CGG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATTACGGTCAGCTGGGCTTTGATCCGACGAGATTCTAGTGTCTTCCATCCCAGGTGGTCTAGCATGGAGGAGACATTGCTGGTGTTGTG--ATAT
gi|9 : ACT----ATTATGCGACGGGTGG---TGCAAGGTCATGA--AAAT---A-----TAT--TGAAAGGATAGACAGTTAGA-AGA-T---CTTGGGTAGTTAAAC-GGTAGAAAG--TAGGAATAAAGTATGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGC-G-GCCGGCACAGCAATGGGAAT------------------C----------A-----a
gi|3 : GTGG---TGCAAGTTCA--A--AAAA---A-----GATGATGAAAGGATATACAGAAAGA-AAAAG---GTTGGATAGTTAAAA-GGTAGAAA---TAAGAACAATGTGTGTCCAGCTACGTTTTCGACTCTTCAACCCAAACTTCTCCGGTTACGGTGGCCAC-A-GCCGGCGCATAAATGAGAAT------------------C----------GCT---AGATACGTGTTGCATGACCCCTA--GACTAGAATAAGAGTAGTGGTGACAG--CC-C-TGCTTGAAAGATACCAAATA-A-GGGG-CCTCTTT-CTGCAACATTGGCAGGCAGAC----------------------TT----------------------GCATACTGTTATAAATTTGTTTAGAATTTCTGTAACACGATGTGGA--TGTAGGCAGCTGGTGGAATTTCCTGG--AGTGGGAGGATCTTGAATGGCCCTGGG-CTG----GGATGAAATACTGT----CTGGGATGTCCAACAATGTCGTTGGTATTCAC-GAACATCATGGTCAGCTGGACTTTGGTCCGACGGGATTCCA-TGTCTCCCATCCAAGGTGGCCGAACATGGAGGAGACACTGCTGGTGTTGTG--A----TGTTGGTCActagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtgttgatagcccctgcttgaaggataccaagtcaggggtttctgttacgccagcaggtaggctgttccatactgaagttgttcgtggaaagaatgagtttctgtagtatgatgtggatgtagagatttagcggaatttcctggagtgggaggattta
gi|14 : cacaTTGATTAGTTAAAAGGGTAGAAA---TAAGAATAAAGTGTGTCCAGCTACTTTTTCACCTCTTCAACCCAAACCTCTCTGGTTGTGGTGGCCGT-G-GCTGGCACAGCAATGGGAAT------------------CACTAG-----A-----GACTACATGTTGCTAGACCCCTACAGACTAGAATGAGAG---TGGTGACAGGCCC-C-TGCTTGAAAGATACCAAGTC-A-GAGtatatcgggcagctctcttctgtattggccattgtatactggcatactgagacacatctaaagaatggttgatttcgggcaaactttatttt
gi|10 : TAGTTAAAA-AGTAGAAA---TAAGAATAAAATGTGTCCAGATAAGTTTT-GCCTCTTCAGCCGAGTCCTCTCTGGTAACAGTGGCC-G-AGGTCGGCACAGCAATGGGAAT------------------CACTAG-----A-----AACTG--TGTGGCTGGACGCCTACAGACTAGAATAAGAGT--TG-TGACAG--CCTC-TGCTTGAAGAATACCAAGTCGG-GGGG-C----TT-CTGCAACATCAGCAGGCAGAC----------------------TG----------------------
gi|11 : ctcttttctatagttccttgccttaacattaacatttaattacacttttcatctacatcatacattgactcggtcacacttgactattacatggccggtggtgcAAGTGTGTC-AGCTACCTTTTTGTCTCTTCAACCCATTCCTCTCCGGTTGCAGTGGCAGC-G-ACCGGCACAACAATGGGAAT------------------C----------ACTAGAAACTACTTGTTGCTGGACCCCTACAAACTAGAATAAGAG---TGTTGATAG--CC-CCTGCTTGAAGGACACCAAGTC-A-GGTG-T----GT-CTGCTAGGGCGGCAGGTTGGC----------------------TG----------------------ttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|1 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttacatctacatcgtacatcgacacagtcacacttgactattacaggaggggcggtgcatggtcAACCCACTCCCATCCAGTTGTGGTGACC-CTG-GTTGTCACAGCAATGGGAATACTAGAAACTACTTGGTGT----------A-----AACTACTTGTTGGTGGACCCCTACAAACTAGAATGAGAA---TGGTGATGG--GCAC-TGCTTGAAGGATACCAATTT-TTGGGG-C----TT-CTGCAACATCAGCAGGCAGGC----------------------TGTTCCATACTGTAGTAATTTGTGGAA-A-------GAAT-------G--------TAATATGATGTTGATGTAGACA--GCTGGCGGAAATTCCTGG--AGTGAGAGGATCTAGTATGGCCCTGGG-CAGTCCAGAGTGAGATACTGGCTAGCTGGGATGTCC-ACAAGGTCATTGGTGATCTTAAAATATCATGGTCTGCTGAGCTTTttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|2 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatcattacattatgttgacacagtcacacttgacttttatgcgacaggtggtggtcaaaaaaaaagattatgaatgggtagacagtaagaaaaggctggCAGCAATGGGAAT------------------CGCAAG-----A-----AACTACTTGTTGCTGGACCCCTACGGACTAGAATAACAG---TGTTGATAGG-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGGGC----TT-CTGCTACGCTGGCAGGTAGGC----------------------TGTTCCATACTGAAGTTGTTGGTGGAA-A-------GAAT-------TAATTTCT-TAGTATGATGTGGTTGTAGAGG--GCTGGCGGAATTTCCTCG--AGTGGGAAGATTTTTTATGTCGCTACG-CTA----TGGTGAAATACTGACTGACTGGGATGTCC-ACAAGGTCGTTGGTGATCTT-GAACATCAGGTTCAGCTGGGCTTTGGTCCGACAAGATTCTAGTGTCTCCAATCCCGGTTGGTCTGACATGGAGGAGACACTGCTGGTGTTGCG--ATATCTGTTGGTCAcaatgtctaccatccgtagtgattgttgttgtcgtatggtgtttagcgacgctatggtggtctaacatggaggagacactactggtgttgtgatatctgttgg
gi|12 : tgTACAGACTAGAATAAGAG---TGTTGATAG--CCGC-TGCTTGAAGGAcatatctggcagctctctcttctgaaccatctccagcttgtgtgtctggtccttggtttacaggttccagactgtggaacagtactcaaggtttggtcgcacaagtgttctgtaggacgtacccttaacctcttcattgttgatatgtagattgagccgaaggaagccgagcatgctgttgctctttttcacagtcttgtcaatatggtagtttcatgagaggttctggaataagtgtagtgcatatcaa
gi|9 : AGAG---TGTTGATAG--CC-CCTGCTTGAAGGATACCAAGTC-A-GGGG-T----TT-CTGTTACGCCAGCAGGTAGGC----------------------TGTTCCATACTGAAGTTGTTCGTGGAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTAGAGA--TTTAGCGGAATTTCCTGG--AGTGGGAGGATTTaaaatggatttctgtataataaagttgatttagagggctggaatttcctcgagtgggaggatcttgtatgttcctgggctggggtgaaatactggctggctggtgtgtccacaaggtcgttggcgattttgagcatcaccgtcagctaggctttggtccgacgagcttgtagtgtctcccatcccaggtggtagtatgagggct
gi|23 : actattatgcgacgggtggtgcaaggtcatgaaaatatattgaaaggatagacagttagaagatcttgggtagttaaacggtagaaagtaggaataaagtatgtccagctacgttttcgcctcttcaacccagtcctctccggttacggtggccgcggccggcacagcaatgggaatcactagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGA----TTTTGCTAG--CC-CCTGCTTGAAGGATACTAAGTCGG-GGGG-C----TT-CTGCAACAGTGGCAGGCAGa
gi|24 : agactGTAGTTAG------------------------TG----------------------ACA-A-------GAAT-------GGATTTCTGTAATATGATCTGGATGTatgttcttgaataaatttg
gi|12 : acatcggtagacagataggtccatgccgtaatgcatG----------------------GAA-A--------AAT-------GGATTTCTGTATAATAAAGTTGATTTAGAGG--GCTGGA---ATTTCCTCG--AGTGGGAGGATCTTGTATGTTCCTGGG-CTG----GGGTGAAATACTGGCTGGCTGGTGTGTCC-ACAAGGTCGTTGGCGATTTT-GAGCATCACCGTCAGCTAGGCTTTGGTCCGACGAGCTTGTAGTGTCTCCCATCCCAGGTGG--TAGTATGAGGGag
gi|1 : tacagactagaataagagtgttgatagccgctgcttgaaTGGTCTAACATGGAGGAGACACTACTGGTGTTGTG--ATATCTGTTGGct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): ACAGGTAAAACAAGATGCTAATTAATTCATTTATTCAACAGTAACATATAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11111111111111 111 33333333 22222222222222 11 1111 6666666666666666666666666666666666666666666666 2222222 1111111 1111 111111 111111 3333333333333
lowQualScore : 4 4444 333 1 33 7 33 55555555555555 2 2 555 6 333 33333333 3 11111111111111 0 2 33 88 8 8 6 3 3 0000 1 1 6666 555 9999999999999999999999999999999999999999999999 3 2222222 1111111 0 55 9999 1 1 4 5 0 2222 666666 0 0 666666 1111111111111 99
lowQualScore : . .... ... . .. . .. .............. . . ... . ... ........ . .............. . . .. .. . . . . . .... . . .... ... .............................................. . ....... ....... . .. .... . . . . . .... ...... . . ...... ............. ..
lowQualScore : 4 7777 999 4 44 5 77 99999999999999 9 9 000 7 555 11111111 6 44444444444444 1 9 99 22 6 6 2 1 3 4444 0 2 5555 444 4444444444444444444444444444444444444444444444 6 3333333 8888888 7 55 4444 7 0 4 7 7 1111 444444 7 1 444444 4444444444444 22
consensus : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCA------CTA-GAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATAAGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
Reference ( family-2238 ) : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCA------C-A-GAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATAAGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGGCTGGNATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
gi|1 : CAT-TACAT--TATGTTGACACAGTCACACTTGACT----TTTATGCGACAGGTGG---T----GGTCA--A-A--AAA---AAAGATTA---TGAATGGGTAGACAGTAAGA-AAA-G---GCTGGA
gi|1 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatAACCCACTCCCATCCAGTTGTGGTGACCCTGGTTGTCACAGCAATGGGAAT-A------CTA-GAAACTACTTGGTGTAAACTACTTGTTGGTGGACCCCTACAAACTAGAATGAGAAT-GG--TGATGG--GCAC-TGCTTGAAGGATACCAATTT-TTGGGG-C----TTCTGCAACATCA----GCAGGCAG---GC----------------------TGTTCCATACTGTA----------GTA-ATTTGTG-GAAA-------GAAT----GTAATATGATGTTGATGTAGACAGCTGGCGGAAATTCCTGG--AGTGAGAGGATCTAGTATGGCCCTGGGCAGTCCAGAGTGAGATACTGGCTAGCTGGGATGTCC-ACAAGGTCATTGGTGATCTTAAAATATCATGGTCTGCTGAGCTTTCAATGTCTACCATCCGTAGTGATTGTTGT-TGTCGTAT----GGT-GTTTAGCGACGCTATGGTGGTCTAACATGGAGGAGACACTACTGGTGTTGTG--ATATCTGTTGGacccactcccatccagttgtggtgaccctggttgtcacagcaatgggaatactagaaactacttggtgtaaactacttgttggtggacccctacaaactagaatgagaatggtgatgggcactgcttgaaggataccaatttttggggcttctgcaacatcagcaggcaggctgttccatactgtagtaatttgtggaaagaatgtaatatgatgttgatgtagacagctggcggaaattcctggagtgagaggatctagtatggccctgggcagtccagagtgagatactggctagctgggatgtccacaaggtcattggtgatcttaaaatatcatggtctgctgagctttcaatgtctaccatccgtagtgattgttgttgtcgtatggtgtttagcgacgctatggtggtctaacatggaggagacactactggtgttgtgatatctgttgg
gi|10 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatcattacattatgttgacacagtcacacttgacttttatgcgacaggtggtggtcaaaaaaaaagattatgaatgggtagacagtaagaaaaggctggCATCTACATCATACATTGACTCGGTCACACTTGACT----ATTACATGGCCGGTGG---TGCTAGTT----A-A--AAA---G-----TA----GAAA
gi|10 : ctcttttctatagttccttgccttaacattaacatttaattacacttttTAGTTAAAA-AGTAGAAA---TAAGAATAAAATGTGTCCAGATAAGTTTT-GCCTCTTCAGCCGAGTCCTCTCTGGTAACAGTGGCCGAGGTCGGCACAGCAATGGGAATCA------CTA-GAAACTG----------------TGTGGCTGGACGCCTACAGACTAGAATAAGAGT-TG--TGACAG--CCTC-TGCTTGAAGAATACCAAGTCGG-GGGG-C----TTCTGCAACATCA----GCAGGCAG---AC----------------------TG----------------------taagaataaaatgtgtccagataagttttgcctcttcagccgagtcctctctggtaacagtggccgaggtcggcacagcaatgggaatcactagaaactgtgtggctggacgcctacagactagaataagagttgtgacagcctctgcttgaagaataccaagtcggggggcttctgcaacatcagcaggcagactgttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctcttttctatagttccttgccttaacattaacatttaattacacttttcatctacatcatacattgactcggtcacacttgactattacatggccggtggtgcCATCTACATCGTACATCGACACAGTCACACTTGACT----ATTACAGGAGGGGCGG---TGCATGGTCA--A-ttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttaAAGTGTGTC-AGCTACCTTTTTGTCTCTTCAACCCATTCCTCTCCGGTTGCAGTGGCAGCGACCGGCACAACAATGGGAATCA------CTA-GAAACTA--------------CTTGTTGCTGGACCCCTACAAACTAGAATAAGAGT-GT--TGATAGC-CC-C-TGCTTGAAGGACACCAAGTC-A-GGTG-T----GTCTGCTAGGGCG----GCAGGTTG---GC----------------------TG----------------------gtgtgtcagctacctttttgtctcttcaacccattcctctccggttgcagtggcagcgaccggcacaacaatgggaatcactagaaactacttgttgctggacccctacaaactagaataagagtgttgatagcccctgcttgaaggacaccaagtcaggtgtgtctgctagggcggcaggttggctgttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttacatctacatcgtacatcgacacagtcacacttgactattacaggaggggcggtgcatggtcTACAGACTAGAATAAGAGT-GT--TGATAG--CCGC-TGCTTGAAGGAttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : G----------------------GAA-A--------AAT-------GGATTTCTGTATAATAAAGTTGATTTAGAGGGCTGG---AATTTCCTCG--AGTGGGAGGATCTTGTATGTTCCTGGGCTG----GGGTGAAATACTGGCTGGCTGGTGTGTCC-ACAAGGTCGTTGGCGATTTT-GAGCATCACCGTCAGCTAGGCTT----TG------GTCCGACGAGCTTGTAGTGTCTCCCATCCCAGGTGG--TAGT------ATGA-------------GGGaaaatggatttctgtataataaagttgatttagagggctggaatttcctcgagtgggaggatcttgtatgttcctgggctggggtgaaatactggctggctggtgtgtccacaaggtcgttggcgattttgagcatcaccgtcagctaggctttggtccgacgagcttgtagtgtctcccatcccaggtggtagtatgagggct
gi|13 : tacagactagaataagagtgttgatagccgctgcttgaaCATCTACATTATACGTCGACACAGTCACACTTGACT----ATTACTTGATGGGTGG---TGCAAGGTTA--A-G--AAG---AGA---TAT--TGAAAGGATAGACAGTAAGA-AAA-G---GTTGGATAGTTAAAA-GGTAGGAAA--TAGGAATTAAGTGTGTCCAGCTAAGTTTTCACCTCTTCAACCCAGTCCTCTCCGGTTATGATGGCCGCct
gi|14 : aaataacaagactgacaaaaaaattgtatcactaaaatgttctaTTGATTAGTTAAAAGGGTAG-AAA--TAAGAATAAAGTGTGTCCAGCTACTTTTTCACCTCTTCAACCCAAACCTCTCTGGTTGTGGTGGCCGTGGCTGGCACAGCAATGGGAATCA------CTA-GAGACTA--------------CATGTTGCTAGACCCCTACAGACTAGAATGAGAGT-GG--TGACAGGCCC-C-TGCTTGAAAGATACCAAGTC-A-GAG
gi|15 : CATTTGCATGATACATCAACCAAATCACACTTGACT----ATTACACGACAGGTGG---CGCTATGCCA--AGA--AAA---A-----AAG--TG--AGAATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAC-TATA-AACA--TAAGAATAAAATATGTCCAGCTACGTTTTCGCCTCTTC
gi|16 : aatatatctaCATCTACATTATACGTGGACGCAGTGACACTTGACT----ATGAGACGACGGGTGG---TGCTAAGTGA--A-G--AAACT-A-----TAT--TGAAAGGATAGGCAGT---T-AGA-G---GTTGGATAGT---AA-TGTAG
gi|17 : ggctactagtaagcgacaaaatcactgatagtccacggtctaATCTACATCATACATCGAC--AGTCACACTTGATT----ATTACATGAGGAGTGGACATGCCAGGTCA--AGA--AAA---A-----TATAATAAAAGGATAAATAG-AAGATAGA-GGTTGTTGGATAGTTAgga
gi|18 : aaaaaaatggtaatcatctaaagttcatttacatctatATCTAAATCGTACGTCCACGCAGTCACACTGGACT----ATTATGGCATGGGTGG---TGta
gi|19 : acattagatatgtttaggatagtttcaatattgaaatgcacattgcataatatttacatttttCATTCACATCATACGTCAACGCAGTCACACTTGACT----ATTACACGACGGGTGG---TGCAAGGTCA--A-G--AAAAATA-----TAT--TGAAAAGATCGACAGTAAGA-AGA-A---GTTGGATAatgttaatacagacaaagggggtaat
gi|2 : ttagattaatagtagttgcttgacagctacatctaCAGCAATGGGAATCG------C-AAGAAACTA--------------CTTGTTGCTGGACCCCTACGGACTAGAATAACAGT-GT--TGATAGG-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGGGC----TTCTGCTACGCTG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTGGTGGAA-A-------GAAT-------TAATTTCT-TAGTATGATGTGGTTGTAGAGGGCTGGCGGAATTTCCTCG--AGTGGGAAGATTTTTTATGTCGCTACGCTA----TGGTGAAATACTGACTGACTGGGATGTCC-ACAAGGTCGTTGGTGATCTT-GAACATCAGGTTCAGCTGGGCTT----TG------GTCCGACAAGATTCTAGTGTCTCCAATCCCGGTTGGTCTGAC------ATGG-------------AGGAGACACTGCTGGTGTTGCG--ATATCTGTTGGTCA
gi|20 : tgCTACATCATGCACCAACACAGTCATACTTGACTTAATATTACATGACCCATGG---TGCTAGGTCA--AGA--AAA---A-----TATAATGAAAGGATAGACAGTAAGA-CGA-G---GTTGGGTAGTTAAAcatatctggcagctctctcttctgaaccatctccagcttgtgtgtctggtccttggtttacaggttccagactgtggaacagtactcaaggtttggtcgcacaagtgttctgtaggacgtacccttaacctcttcattgttgatatgtagattgagccgaaggaagccgagcatgctgttgctctttttcacagtcttgtcaatatggtagtttcatgagaggttctggaataagtgtagtgcatatcaa
gi|21 : CATTGTACGTCGGCGCAGTCACACTTAACT----ATTACGCGAT-GGTGT---TCAAAGGTC
gi|22 : aaatgccatctactacagtatctgctgcagtttttaacttaggtCATCTACATTGTACGTCAACGCAGTCACACTTGACT----ATTACGCGACGGG
gi|23 : tcaaagtgagtcaaagatagttctattatttctatgttttctaAGACTAGA-------T-TT--TGCTAG--CC-CCTGCTTGAAGGATACTAAGTCGG-GGGG-C----TTCTGCAACAGTG----GCAGGCAG---
gi|24 : CCATGCCGTAATGCATGTAGTTAG-----------------------TG----------------------ACA-A-------GAAT-------GGATTTCTGTAATATGATCTGGATGTAGatgttcttgaataaatttg
gi|3 : acatcggtagacagataggtGTGG---TGCAAGTTCA--A-A--AAA---A-----GATGATGAAAGGATATACAGAAAGA-AAAAG---GTTGGATAGTTAAAA-GGTAGAAA---TAAGAACAATGTGTGTCCAGCTACGTTTTCGACTCTTCAACCCAAACTTCTCCGGTTACGGTGGCCACAGCCGGCGCATAAATGAGAATCG------CTA-GA---TA--------------CGTGTTGCATGACCCCT--AGACTAGAATAAGAGTAGTGGTGACAG--CC-C-TGCTTGAAAGATACCAAATA-A-GGGG-CCTCTTTCTGCAACATTG----GCAGGCAG---AC----------------------TT----------------------GCATACTGTTATAAATTTGTTTAGAATTTCTGTAACACGATGTGGATGTAGGCAGCTGGTGGAATTTCCTGG--AGTGGGAGGATCTTGAATGGCCCTGGGCTG----GGATGAAATACTG--T--CTGGGATGTCCAACAATGTCGTTGGTATTCAC-GAACATCATGGTCAGCTGGACTT----TG------GTCCGACGGGATTCCA-TGTCTCCCATCCAAGGTGGCCGAAC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--A----TGTTGGTCA
gi|4 : cacaATCTACATCGTACGTCGAC--AGTCACACTTGACT----ATTACGAGACGGGTGG---TGCAAGGTCA--A-A--AAG---AGA---TAT--TGAAA------------AGA-AGA-G---GTTGGATAGTTAAAA-A-TAGAAAG--TAGGAATAAAGTGTGTCCAGCTATGTTTTCACCTCTTCAACCCAGTCCTCTTCGGTTACGGTGGCCGCGGCTGGCACAGCAAAGGGAATCA------CTA-GAAACTA--------------CTTGTTGCTGGACCCTTACAAACTAAAATA--AGT-GT--TGATAGC-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-TG---TGCTGCT-C-CCG----GCAGGTAG---GCTGTTCCATACTAAAGTTGTTCGTG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTTGAGGGCTGGTGGAATTACCTGG--AGTGGAAGGATCTTGTATGTCCCTGGGCTG----GGGTGAGGTACTGGCTGACTGGTATGTCC-ACAAGGTCTTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCAATGAGATTCTAGTGTCTCCCATCCCAGTTGGTCTAGC------ATGG-------------AGAAGACACTACTGGTGTTGTAATATATCTGTCGGTCAtatatcgggcagctctcttctgtattggccattgtatactggcatactgagacacatctaaagaatggttgatttcgggcaaactttatttt
gi|5 : atctatCATCTACATTGTACGTCTACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAGGAATAAAGTGTGTCCAGCTACGTTTTCACTTCTTTAACCCAGTCCTCTCTGGATACGGTGGCC-CAGCCGGCACAGCAATGGGAATCA------------AACTA--------------TTTGTTGCTGGACCCCTACGAACTAGAATAAGA-T-GT--TGATAG--CC-C-TGCTTGAGGGATACCAAGTC-A-GGGG-C----GTCTGCTAGGCTG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTGTAGGGCTGGAGGAATTTCCTGG--AGTGGGAGGATCTTCTATGTCCTTGGGTTG----GGGTGAGGTACTGGCAGACTGGTATGTCC-ACAAAGTTGTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGTTGATCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCAc
gi|6 : TCACACTTGA-------TTACGCGACGGGTGG---TGCAAGGTCA--A-G--AAA---A-----GAT--TGAAAGGAT-GACAGTAAGA-AGA-T---GTTGGATAGAAAAAACGGTAAAAAAAATAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTACGGTTATGGTGGCCGCGGCCGGCACAGCAATGTGAATCA------CTA-GAAACGA--------------CGTGTTGCTGGTTCCC----------AAT--GGAT-GT--TGATAG--CC-CCTGCTTGAAGGATACCTGCTC-A-GGGG-C----TTTTGCTACGCCG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTCCGTAGAA-A-------GAAT-------GATTTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCGTGTATGTCCCCGAGCGG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATTACGGTCAGCTGGGCTT----TG------ATCCGACGAGATTCTAGTGTCTTCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACATTGCTGGTGTTGTG--ATAT
gi|7 : TCTACATCGTATGCCGACACAGTCACACTTGACT----ATTACACAACAGGTGG---TGCAAGGTCA--G-ACAAAA---G-----TAA--TGAAAGGATAAACAGTAAGA-AGG-G---GTTGGATAGTTAAAA-TGTAGAAA---TAAGAATAATGTGTGTCCAGCTACGTTTACGCCCCTTCAACCCAGTCCATTTCAGTTACAGCGGCCGCGGCCAGCACAGCAATGGGAATCAT-----T-A-GAAACTA--------------CTTGTTGTTGGA-CCCTGCAGACTAGAATAACAGT-AT--TGATAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----GTCTGCTACATCG----GCAGGTAG---GCTGTTCCATACTGAAGTTGTTTGTG----------------------GAA-A-------GAAT-------GAATTTCTGTAGCATGATGTGGTTGTACAGGACTGGCGAAATTTCCTGG--A-TGTGAGGATCTTGTATGTTCCTGGGCTT----GGG-GAAATACTGGCTGACTGGTATGTCC-ACAAa
gi|8 : CATCTACATCATACAGCAACGCAGTCACACTTGACT----ACT----------TAG---------------A-A--AAG---A-----TAA--TGAAATTATATAAAGTAATA-AGA-G---GTTGGATAGTTAAAA-GGTA-AAAA--TAAGAATAAAGTGTATCCAGCTACGTTTTTG--------GCCCAGTCCTCTCAAGTTATGGTGGCTGC------CGCAGCAACAGGAATCATATCACT-A-GAAACTA--------------CTTGTTGCTGGACGCCTACAGACTAGAATGAGAGT-GG--TGACAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCAACACCA----GCAGACAG---GCAGTCCCATACTGTAGAAGTTTGTG----------------------GAA-A-------CAAT-------GAATTCTTGTAATATGATGTTGTTGTACATGACTGGCGGAATTTCCTGGACAGTAAGAGGATCTGGTATGGCCTTGGGCTG----TGGTGAAATACTGGCAAGCTGGGATGTCC-ACAAGGTTGTT
gi|9 : ACT----ATTATGCGACGGGTGG---TGCAAGGTCATGA-A--AAT---A-----TAT--TGAAAGGATAGACAGTTAGA-AGA-T---CTTGGGTAGTTAAAC-GGTAGAAAG--TAGGAATAAAGTATGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCA------C-
gi|9 : AGAGT-GT--TGATAG--CC-CCTGCTTGAAGGATACCAAGTC-A-GGGG-T----TTCTGTTACGCCA----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTCGTGGAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTAGAGATTTAGCGGAATTTCCTGG--AGTGGGAGGATTTtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtgttgatagcccctgcttgaaggataccaagtcaggggtttctgttacgccagcaggtaggctgttccatactgaagttgttcgtggaaagaatgagtttctgtagtatgatgtggatgtagagatttagcggaatttcctggagtgggaggattta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ACAGGTAAAACAAGATGCTAATTAATTCATTTATTCAACAGTAACATATAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11111111111111 111 11111111111111 11 1111 6666666666666666666666666666666666666666666666 2222222 1111111 1111 111111 111111 3333333333333
lowQualScore : 4 4444 333 1 33 7 33 55555555555555 2 2 555 6 333 999999 555 55 7777 3 88888 99999999999999 99999999 2 33 88 8 8 6 3 3 0000 1 1 6666 555 9999999999999999999999999999999999999999999999 3 2222222 1111111 0 55 9999 1 4 4 5 0 2222 666666 0 0 666666 1111111111111 99
lowQualScore : . .... ... . .. . .. .............. . . ... . ... ...... ... .. .... . ..... .............. ........ . .. .. . . . . . .... . . .... ... .............................................. . ....... ....... . .. .... . . . . . .... ...... . . ...... ............. ..
lowQualScore : 4 7777 999 4 44 5 77 99999999999999 9 9 000 7 555 666666 888 00 7777 3 33333 66666666666666 44444444 9 99 22 6 6 2 1 3 4444 0 2 5555 444 4444444444444444444444444444444444444444444444 6 3333333 8888888 7 55 4444 4 4 4 7 7 1111 444444 7 1 444444 4444444444444 22
consensus : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
Reference ( family-2238 ) : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
gi|1 : CAT-TACAT--TATGTTGACACAGTCACACTTGACT----TTTATGCGACAGGTGG---T----GGTCA--A-A--AAA---AAAGATTA---TGAATGGGTAGACAGTAAGA-AAA-G---GCTGGA
gi|1 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatAACCCACTCCCATC------CAGTTGTGGTGAC---CCTGGT--TGT----CAC-AGCAATGGGAAT-A-----CTAGAAACTACTTGGTGTAAACTACTTGTTGGTGGACCCCTACAAACTAGAATG-------AGAAT-GG--TGATGG--GCAC-TGCTTGAAGGATACCAATTT-TTGGGG-C----TTCTGCAACATCA----GCAGGCAG---GC----------------------TGTTCCATACTGTA----------GTA-ATTTGTG-GAAA-------GAAT----GTAATATGATGTTGATGTAGACAGCTGGCGGAAATTCCTGG--AGTGAGAGGATCTAGTATGGCCCTGGGCAGTCCAGAGTGAGATACTGGCTAGCTGGGATGTCC-ACAAGGTCATTGGTGATCTTAAAATATCATGGTCTGCTGAGCTTTCAATGTCTACCATCCGTAGTGATTGTTGT-TGTCGTAT----GGT-GTTTAGCGACGCTATGGTGGTCTAACATGGAGGAGACACTACTGGTGTTGTG--ATATCTGTTGGacccactcccatccagttgtggtgaccctggttgtcacagcaatgggaatactagaaactacttggtgtaaactacttgttggtggacccctacaaactagaatgagaatggtgatgggcactgcttgaaggataccaatttttggggcttctgcaacatcagcaggcaggctgttccatactgtagtaatttgtggaaagaatgtaatatgatgttgatgtagacagctggcggaaattcctggagtgagaggatctagtatggccctgggcagtccagagtgagatactggctagctgggatgtccacaaggtcattggtgatcttaaaatatcatggtctgctgagctttcaatgtctaccatccgtagtgattgttgttgtcgtatggtgtttagcgacgctatggtggtctaacatggaggagacactactggtgttgtgatatctgttgg
gi|10 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatcattacattatgttgacacagtcacacttgacttttatgcgacaggtggtggtcaaaaaaaaagattatgaatgggtagacagtaagaaaaggctggCATCTACATCATACATTGACTCGGTCACACTTGACT----ATTACATGGCCGGTGG---TGCTAGTT----A-A--AAA---G-----TA----GAAA
gi|10 : ctcttttctatagttccttgccttaacattaacatttaattacacttttTAGTTAAAA-AGTAGAAA---TAAGAATAAAATGTGTCCAGATAAGTTTT-GCCTCTTCAGCCGAGTCCTCTC------TGGTAACAGTGGC---CGAGGT--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTG----------------TGTGGCTGGACGCCTACAGACTAGAATA-------AGAGT-TG--TGACAG--CCTC-TGCTTGAAGAATACCAAGTCGG-GGGG-C----TTCTGCAACATCA----GCAGGCAG---AC----------------------TG----------------------taagaataaaatgtgtccagataagttttgcctcttcagccgagtcctctctggtaacagtggccgaggtcggcacagcaatgggaatcactagaaactgtgtggctggacgcctacagactagaataagagttgtgacagcctctgcttgaagaataccaagtcggggggcttctgcaacatcagcaggcagactgttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctcttttctatagttccttgccttaacattaacatttaattacacttttcatctacatcatacattgactcggtcacacttgactattacatggccggtggtgcCATCTACATCGTACATCGACACAGTCACACTTGACT----ATTACAGGAGGGGCGG---TGCATGGTCA--A-ttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttaAAGTGTGTC-AGCTACCTTTTTGTCTCTTCAACCCATTCCTCTC------CGGTTGCAGTGGC---AGCGAC--CGG----CAC-AACAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAAACTAGAATA-------AGAGT-GT--TGATAGC-CC-C-TGCTTGAAGGACACCAAGTC-A-GGTG-T----GTCTGCTAGGGCG----GCAGGTTG---GC----------------------TG----------------------gtgtgtcagctacctttttgtctcttcaacccattcctctccggttgcagtggcagcgaccggcacaacaatgggaatcactagaaactacttgttgctggacccctacaaactagaataagagtgttgatagcccctgcttgaaggacaccaagtcaggtgtgtctgctagggcggcaggttggctgttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttacatctacatcgtacatcgacacagtcacacttgactattacaggaggggcggtgcatggtcTACAGACTAGAATA-------AGAGT-GT--TGATAG--CCGC-TGCTTGAAGGAttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : G----------------------GAA-A--------AAT-------GGATTTCTGTATAATAAAGTTGATTTAGAGGGCTGG---AATTTCCTCG--AGTGGGAGGATCTTGTATGTTCCTGGGCTG----GGGTGAAATACTGGCTGGCTGGTGTGTCC-ACAAGGTCGTTGGCGATTTT-GAGCATCACCGTCAGCTAGGCTT----TG------GTCCGACGAGCTTGTAGTGTCTCCCATCCCAGGTGG--TAGT------ATGA-------------GGGaaaatggatttctgtataataaagttgatttagagggctggaatttcctcgagtgggaggatcttgtatgttcctgggctggggtgaaatactggctggctggtgtgtccacaaggtcgttggcgattttgagcatcaccgtcagctaggctttggtccgacgagcttgtagtgtctcccatcccaggtggtagtatgagggct
gi|13 : tacagactagaataagagtgttgatagccgctgcttgaaCATCTACATTATACGTCGACACAGTCACACTTGACT----ATTACTTGATGGGTGG---TGCAAGGTTA--A-G--AAG---AGA---TAT--TGAAAGGATAGACAGTAAGA-AAA-G---GTTGGATAGTTAAAA-GGTAGGAAA--TAGGAATTAAGTGTGTCCAGCTAAGTTTTCACCTCTTCAACCCAGTCCTCTC------CGGTTATGATGGC---CGCct
gi|14 : aaataacaagactgacaaaaaaattgtatcactaaaatgttctaTTGATTAGTTAAAAGGGTAG-AAA--TAAGAATAAAGTGTGTCCAGCTACTTTTTCACCTCTTCAACCCAAACCTCTC------TGGTTGTGGTGGC---CGTGGC--TGG----CAC-AGCAATGGGAATCA-----CTAGAGACTA--------------CATGTTGCTAGACCCCTACAGACTAGAATG-------AGAGT-GG--TGACAGGCCC-C-TGCTTGAAAGATACCAAGTC-A-GAG
gi|15 : CATTTGCATGATACATCAACCAAATCACACTTGACT----ATTACACGACAGGTGG---CGCTATGCCA--AGA--AAA---A-----AAG--TG--AGAATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAC-TATA-AACA--TAAGAATAAAATATGTCCAGCTACGTTTTCGCCTCTTC
gi|16 : aatatatctaCATCTACATTATACGTGGACGCAGTGACACTTGACT----ATGAGACGACGGGTGG---TGCTAAGTGA--A-G--AAACT-A-----TAT--TGAAAGGATAGGCAGT---T-AGA-G---GTTGGATAGT---AA-TGTAG
gi|17 : ggctactagtaagcgacaaaatcactgatagtccacggtctaATCTACATCATACATCGAC--AGTCACACTTGATT----ATTACATGAGGAGTGGACATGCCAGGTCA--AGA--AAA---A-----TATAATAAAAGGATAAATAG-AAGATAGA-GGTTGTTGGATAGTTAgga
gi|18 : aaaaaaatggtaatcatctaaagttcatttacatctatATCTAAATCGTACGTCCACGCAGTCACACTGGACT----ATTATGGCATGGGTGG---TGta
gi|19 : acattagatatgtttaggatagtttcaatattgaaatgcacattgcataatatttacatttttCATTCACATCATACGTCAACGCAGTCACACTTGACT----ATTACACGACGGGTGG---TGCAAGGTCA--A-G--AAAAATA-----TAT--TGAAAAGATCGACAGTAAGA-AGA-A---GTTGGATAatgttaatacagacaaagggggtaat
gi|2 : ttagattaatagtagttgcttgacagctacatctaC-AGCAATGGGAATCG-----CAAGAAACTA--------------CTTGTTGCTGGACCCCTACGGACTAGAATA-------ACAGT-GT--TGATAGG-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGGGC----TTCTGCTACGCTG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTGGTGGAA-A-------GAAT-------TAATTTCT-TAGTATGATGTGGTTGTAGAGGGCTGGCGGAATTTCCTCG--AGTGGGAAGATTTTTTATGTCGCTACGCTA----TGGTGAAATACTGACTGACTGGGATGTCC-ACAAGGTCGTTGGTGATCTT-GAACATCAGGTTCAGCTGGGCTT----TG------GTCCGACAAGATTCTAGTGTCTCCAATCCCGGTTGGTCTGAC------ATGG-------------AGGAGACACTGCTGGTGTTGCG--ATATCTGTTGGTCA
gi|20 : tgCTACATCATGCACCAACACAGTCATACTTGACTTAATATTACATGACCCATGG---TGCTAGGTCA--AGA--AAA---A-----TATAATGAAAGGATAGACAGTAAGA-CGA-G---GTTGGGTAGTTAAAcatatctggcagctctctcttctgaaccatctccagcttgtgtgtctggtccttggtttacaggttccagactgtggaacagtactcaaggtttggtcgcacaagtgttctgtaggacgtacccttaacctcttcattgttgatatgtagattgagccgaaggaagccgagcatgctgttgctctttttcacagtcttgtcaatatggtagtttcatgagaggttctggaataagtgtagtgcatatcaa
gi|21 : CATTGTACGTCGGCGCAGTCACACTTAACT----ATTACGCGAT-GGTGT---TCAAAGGTC
gi|22 : aaatgccatctactacagtatctgctgcagtttttaacttaggtCATCTACATTGTACGTCAACGCAGTCACACTTGACT----ATTACGCGACGGG
gi|23 : tcaaagtgagtcaaagatagttctattatttctatgttttctaAGACTAGA--------------T-TT--TGCTAG--CC-CCTGCTTGAAGGATACTAAGTCGG-GGGG-C----TTCTGCAACAGTG----GCAGGCAG---
gi|24 : CCATGCCGTAATGCATGTAGTTAG-----------------------TG----------------------ACA-A-------GAAT-------GGATTTCTGTAATATGATCTGGATGTAGatgttcttgaataaatttg
gi|3 : acatcggtagacagataggtGTGG---TGCAAGTTCA--A-A--AAA---A-----GATGATGAAAGGATATACAGAAAGA-AAAAG---GTTGGATAGTTAAAA-GGTAGAAA---TAAGAACAATGTGTGTCCAGCTACGTTTTCGACTCTTCAACCCAAACTTCTC------CGGTTACGGTGGC---CACAGC--CGG----CGC-ATAAATGAGAATCG-----CTAGA---TA--------------CGTGTTGCATGACCCCT--AGACTAGAATA-------AGAGTAGTGGTGACAG--CC-C-TGCTTGAAAGATACCAAATA-A-GGGG-CCTCTTTCTGCAACATTG----GCAGGCAG---AC----------------------TT----------------------GCATACTGTTATAAATTTGTTTAGAATTTCTGTAACACGATGTGGATGTAGGCAGCTGGTGGAATTTCCTGG--AGTGGGAGGATCTTGAATGGCCCTGGGCTG----GGATGAAATACTGTCTG---GG-ATGTCCAACAATGTCGTTGGTATTCAC-GAACATCATGGTCAGCTGGACTT----TG------GTCCGACGGGATTCCA-TGTCTCCCATCCAAGGTGGCCGAAC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--A----TGTTGGTCA
gi|4 : cacaATCTACATCGTACGTCGAC--AGTCACACTTGACT----ATTACGAGACGGGTGG---TGCAAGGTCA--A-A--AAG---AGA---TAT--TGAAA------------AGA-AGA-G---GTTGGATAGTTAAAA-A-TAGAAAG--TAGGAATAAAGTGTGTCCAGCTATGTTTTCACCTCTTCAACCCAGTCCTCTT------CGGTTACGGTGGC---CGCGGC--TGG----CAC-AGCAAAGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCTTACAAACTAAAATA---------AGT-GT--TGATAGC-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-TG---TGCTGCT-C-CCG----GCAGGTAG---GCTGTTCCATACTAAAGTTGTTCGTG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTTGAGGGCTGGTGGAATTACCTGG--AGTGGAAGGATCTTGTATGTCCCTGGGCTG----GGGTGAGGTACTGGCTGACTGGTATGTCC-ACAAGGTCTTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCAATGAGATTCTAGTGTCTCCCATCCCAGTTGGTCTAGC------ATGG-------------AGAAGACACTACTGGTGTTGTAATATATCTGTCGGTCAtatatcgggcagctctcttctgtattggccattgtatactggcatactgagacacatctaaagaatggttgatttcgggcaaactttatttt
gi|5 : atctatCATCTACATTGTACGTCTACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAGGAATAAAGTGTGTCCAGCTACGTTTTCACTTCTTTAACCCAGTCCTCTC------TGGATACGGTGGC---C-CAGC--CGG----CAC-AGCAATGGGAATCA----------AACTA--------------TTTGTTGCTGGACCCCTACGAACTAGAATA-------AGA-T-GT--TGATAG--CC-C-TGCTTGAGGGATACCAAGTC-A-GGGG-C----GTCTGCTAGGCTG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTGTAGGGCTGGAGGAATTTCCTGG--AGTGGGAGGATCTTCTATGTCCTTGGGTTG----GGGTGAGGTACTGGCAGACTGGTATGTCC-ACAAAGTTGTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGTTGATCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCAc
gi|6 : TCACACTTGA-------TTACGCGACGGGTGG---TGCAAGGTCA--A-G--AAA---A-----GAT--TGAAAGGAT-GACAGTAAGA-AGA-T---GTTGGATAGAAAAAACGGTAAAAAAAATAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTA------CGGTTATGGTGGC---CGCGGC--CGG----CAC-AGCAATGTGAATCA-----CTAGAAACGA--------------CGTGTTGCTGGTTCCC----------AAT---------GGAT-GT--TGATAG--CC-CCTGCTTGAAGGATACCTGCTC-A-GGGG-C----TTTTGCTACGCCG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTCCGTAGAA-A-------GAAT-------GATTTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCGTGTATGTCCCCGAGCGG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATTACGGTCAGCTGGGCTT----TG------ATCCGACGAGATTCTAGTGTCTTCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACATTGCTGGTGTTGTG--ATAT
gi|7 : TCTACATCGTATGCCGACACAGTCACACTTGACT----ATTACACAACAGGTGG---TGCAAGGTCA--G-ACAAAA---G-----TAA--TGAAAGGATAAACAGTAAGA-AGG-G---GTTGGATAGTTAAAA-TGTAGAAA---TAAGAATAATGTGTGTCCAGCTACGTTTACGCCCCTTCAACCCAGTCCATTT------CAGTTACAGCGGC---CGCGGC--CAG----CAC-AGCAATGGGAATCA-----TTAGAAACTA--------------CTTGTTGTTGGA-CCCTGCAGACTAGAATA-------ACAGT-AT--TGATAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----GTCTGCTACATCG----GCAGGTAG---GCTGTTCCATACTGAAGTTGTTTGTG----------------------GAA-A-------GAAT-------GAATTTCTGTAGCATGATGTGGTTGTACAGGACTGGCGAAATTTCCTGG--A-TGTGAGGATCTTGTATGTTCCTGGGCTT----GGG-GAAATACTGGCTGACTGGTATGTCC-ACAAa
gi|8 : CATCTACATCATACAGCAACGCAGTCACACTTGACT----ACT----------TAG---------------A-A--AAG---A-----TAA--TGAAATTATATAAAGTAATA-AGA-G---GTTGGATAGTTAAAA-GGTA-AAAA--TAAGAATAAAGTGTATCCAGCTACGTTTTTG--------GCCCAGTCCTCTC------AAGTTATGGTGGC---TGC------------CGC-AGCAACAGGAATCATATCACTAGAAACTA--------------CTTGTTGCTGGACGCCTACAGACTAGAATG-------AGAGT-GG--TGACAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCAACACCA----GCAGACAG---GCAGTCCCATACTGTAGAAGTTTGTG----------------------GAA-A-------CAAT-------GAATTCTTGTAATATGATGTTGTTGTACATGACTGGCGGAATTTCCTGGACAGTAAGAGGATCTGGTATGGCCTTGGGCTG----TGGTGAAATACTGGCAAGCTGGGATGTCC-ACAAGGTTGTT
gi|9 : ACT----ATTATGCGACGGGTGG---TGCAAGGTCATGA-A--AAT---A-----TAT--TGAAAGGATAGACAGTTAGA-AGA-T---CTTGGGTAGTTAAAC-GGTAGAAAG--TAGGAATAAAGTATGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCACTAGNNNNNNNNNNNN-----NNNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGT-GT--TGATAG--CC-CCTGCTTGAAGGATACCAAGTC-A-GGGG-T----TTCTGTTACGCCA----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTCGTGGAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTAGAGATTTAGCGGAATTTCCTGG--AGTGGGAGGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ACAGGTAAAACAAGATGCTAATTAATTCATTTATTCAACAGTAACATATAGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11111111111111 111 11111111111111 11 1111 6666666666666666666666666666666666666666666666 2222222 1111111 1111 111111 111111 3333333333333
lowQualScore : 4 4444 333 1 33 7 33 55555555555555 2 2 555 6 333 999999 555 55 7777 3 88888 99999999999999 99999999 2 33 88 8 8 6 3 3 0000 1 1 6666 555 9999999999999999999999999999999999999999999999 3 2222222 1111111 0 55 9999 1 4 4 5 0 2222 666666 0 0 666666 1111111111111 99
lowQualScore : . .... ... . .. . .. .............. . . ... . ... ...... ... .. .... . ..... .............. ........ . .. .. . . . . . .... . . .... ... .............................................. . ....... ....... . .. .... . . . . . .... ...... . . ...... ............. ..
lowQualScore : 4 7777 999 4 44 5 77 99999999999999 9 9 000 7 555 666666 888 00 7777 3 33333 66666666666666 44444444 9 99 22 6 6 2 1 3 4444 0 2 5555 444 4444444444444444444444444444444444444444444444 6 3333333 8888888 7 55 4444 4 4 4 7 7 1111 444444 7 1 444444 4444444444444 22
consensus : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
Reference ( family-2238 ) : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
gi|1 : CAT-TACAT--TATGTTGACACAGTCACACTTGACT----TTTATGCGACAGGTGG---T----GGTCA--A-A--AAA---AAAGATTA---TGAATGGGTAGACAGTAAGA-AAA-G---GCTGGA
gi|1 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatAACCCACTCCCATC------CAGTTGTGGTGAC---CCTGGT--TGT----CAC-AGCAATGGGAAT-A-----CTAGAAACTACTTGGTGTAAACTACTTGTTGGTGGACCCCTACAAACTAGAATG-------AGAAT-GG--TGATGG--GCAC-TGCTTGAAGGATACCAATTT-TTGGGG-C----TTCTGCAACATCA----GCAGGCAG---GC----------------------TGTTCCATACTGTA----------GTA-ATTTGTG-GAAA-------GAAT----GTAATATGATGTTGATGTAGACAGCTGGCGGAAATTCCTGG--AGTGAGAGGATCTAGTATGGCCCTGGGCAGTCCAGAGTGAGATACTGGCTAGCTGGGATGTCC-ACAAGGTCATTGGTGATCTTAAAATATCATGGTCTGCTGAGCTTTCAATGTCTACCATCCGTAGTGATTGTTGT-TGTCGTAT----GGT-GTTTAGCGACGCTATGGTGGTCTAACATGGAGGAGACACTACTGGTGTTGTG--ATATCTGTTGGacccactcccatccagttgtggtgaccctggttgtcacagcaatgggaatactagaaactacttggtgtaaactacttgttggtggacccctacaaactagaatgagaatggtgatgggcactgcttgaaggataccaatttttggggcttctgcaacatcagcaggcaggctgttccatactgtagtaatttgtggaaagaatgtaatatgatgttgatgtagacagctggcggaaattcctggagtgagaggatctagtatggccctgggcagtccagagtgagatactggctagctgggatgtccacaaggtcattggtgatcttaaaatatcatggtctgctgagctttcaatgtctaccatccgtagtgattgttgttgtcgtatggtgtttagcgacgctatggtggtctaacatggaggagacactactggtgttgtgatatctgttgg
gi|10 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatcattacattatgttgacacagtcacacttgacttttatgcgacaggtggtggtcaaaaaaaaagattatgaatgggtagacagtaagaaaaggctggCATCTACATCATACATTGACTCGGTCACACTTGACT----ATTACATGGCCGGTGG---TGCTAGTT----A-A--AAA---G-----TA----GAAA
gi|10 : ctcttttctatagttccttgccttaacattaacatttaattacacttttTAGTTAAAA-AGTAGAAA---TAAGAATAAAATGTGTCCAGATAAGTTTT-GCCTCTTCAGCCGAGTCCTCTC------TGGTAACAGTGGC---CGAGGT--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTG----------------TGTGGCTGGACGCCTACAGACTAGAATA-------AGAGT-TG--TGACAG--CCTC-TGCTTGAAGAATACCAAGTCGG-GGGG-C----TTCTGCAACATCA----GCAGGCAG---AC----------------------TG----------------------taagaataaaatgtgtccagataagttttgcctcttcagccgagtcctctctggtaacagtggccgaggtcggcacagcaatgggaatcactagaaactgtgtggctggacgcctacagactagaataagagttgtgacagcctctgcttgaagaataccaagtcggggggcttctgcaacatcagcaggcagactgttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctcttttctatagttccttgccttaacattaacatttaattacacttttcatctacatcatacattgactcggtcacacttgactattacatggccggtggtgcCATCTACATCGTACATCGACACAGTCACACTTGACT----ATTACAGGAGGGGCGG---TGCATGGTCA--A-ttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttaAAGTGTGTC-AGCTACCTTTTTGTCTCTTCAACCCATTCCTCTC------CGGTTGCAGTGGC---AGCGAC--CGG----CAC-AACAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAAACTAGAATA-------AGAGT-GT--TGATAGC-CC-C-TGCTTGAAGGACACCAAGTC-A-GGTG-T----GTCTGCTAGGGCG----GCAGGTTG---GC----------------------TG----------------------gtgtgtcagctacctttttgtctcttcaacccattcctctccggttgcagtggcagcgaccggcacaacaatgggaatcactagaaactacttgttgctggacccctacaaactagaataagagtgttgatagcccctgcttgaaggacaccaagtcaggtgtgtctgctagggcggcaggttggctgttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttacatctacatcgtacatcgacacagtcacacttgactattacaggaggggcggtgcatggtcTACAGACTAGAATA-------AGAGT-GT--TGATAG--CCGC-TGCTTGAAGGAttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : G----------------------GAA-A--------AAT-------GGATTTCTGTATAATAAAGTTGATTTAGAGGGCTGG---AATTTCCTCG--AGTGGGAGGATCTTGTATGTTCCTGGGCTG----GGGTGAAATACTGGCTGGCTGGTGTGTCC-ACAAGGTCGTTGGCGATTTT-GAGCATCACCGTCAGCTAGGCTT----TG------GTCCGACGAGCTTGTAGTGTCTCCCATCCCAGGTGG--TAGT------ATGA-------------GGGaaaatggatttctgtataataaagttgatttagagggctggaatttcctcgagtgggaggatcttgtatgttcctgggctggggtgaaatactggctggctggtgtgtccacaaggtcgttggcgattttgagcatcaccgtcagctaggctttggtccgacgagcttgtagtgtctcccatcccaggtggtagtatgagggct
gi|13 : tacagactagaataagagtgttgatagccgctgcttgaaCATCTACATTATACGTCGACACAGTCACACTTGACT----ATTACTTGATGGGTGG---TGCAAGGTTA--A-G--AAG---AGA---TAT--TGAAAGGATAGACAGTAAGA-AAA-G---GTTGGATAGTTAAAA-GGTAGGAAA--TAGGAATTAAGTGTGTCCAGCTAAGTTTTCACCTCTTCAACCCAGTCCTCTC------CGGTTATGATGGC---CGCct
gi|14 : aaataacaagactgacaaaaaaattgtatcactaaaatgttctaTTGATTAGTTAAAAGGGTAG-AAA--TAAGAATAAAGTGTGTCCAGCTACTTTTTCACCTCTTCAACCCAAACCTCTC------TGGTTGTGGTGGC---CGTGGC--TGG----CAC-AGCAATGGGAATCA-----CTAGAGACTA--------------CATGTTGCTAGACCCCTACAGACTAGAATG-------AGAGT-GG--TGACAGGCCC-C-TGCTTGAAAGATACCAAGTC-A-GAG
gi|15 : CATTTGCATGATACATCAACCAAATCACACTTGACT----ATTACACGACAGGTGG---CGCTATGCCA--AGA--AAA---A-----AAG--TG--AGAATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAC-TATA-AACA--TAAGAATAAAATATGTCCAGCTACGTTTTCGCCTCTTC
gi|16 : aatatatctaCATCTACATTATACGTGGACGCAGTGACACTTGACT----ATGAGACGACGGGTGG---TGCTAAGTGA--A-G--AAACT-A-----TAT--TGAAAGGATAGGCAGT---T-AGA-G---GTTGGATAGT---AA-TGTAG
gi|17 : ggctactagtaagcgacaaaatcactgatagtccacggtctaATCTACATCATACATCGAC--AGTCACACTTGATT----ATTACATGAGGAGTGGACATGCCAGGTCA--AGA--AAA---A-----TATAATAAAAGGATAAATAG-AAGATAGA-GGTTGTTGGATAGTTAgga
gi|18 : aaaaaaatggtaatcatctaaagttcatttacatctatATCTAAATCGTACGTCCACGCAGTCACACTGGACT----ATTATGGCATGGGTGG---TGta
gi|19 : acattagatatgtttaggatagtttcaatattgaaatgcacattgcataatatttacatttttCATTCACATCATACGTCAACGCAGTCACACTTGACT----ATTACACGACGGGTGG---TGCAAGGTCA--A-G--AAAAATA-----TAT--TGAAAAGATCGACAGTAAGA-AGA-A---GTTGGATAatgttaatacagacaaagggggtaat
gi|2 : ttagattaatagtagttgcttgacagctacatctaC-AGCAATGGGAATCG-----CAAGAAACTA--------------CTTGTTGCTGGACCCCTACGGACTAGAATA-------ACAGT-GT--TGATAGG-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGGGC----TTCTGCTACGCTG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTGGTGGAA-A-------GAAT-------TAATTTCT-TAGTATGATGTGGTTGTAGAGGGCTGGCGGAATTTCCTCG--AGTGGGAAGATTTTTTATGTCGCTACGCTA----TGGTGAAATACTGACTGACTGGGATGTCC-ACAAGGTCGTTGGTGATCTT-GAACATCAGGTTCAGCTGGGCTT----TG------GTCCGACAAGATTCTAGTGTCTCCAATCCCGGTTGGTCTGAC------ATGG-------------AGGAGACACTGCTGGTGTTGCG--ATATCTGTTGGTCA
gi|20 : tgCTACATCATGCACCAACACAGTCATACTTGACTTAATATTACATGACCCATGG---TGCTAGGTCA--AGA--AAA---A-----TATAATGAAAGGATAGACAGTAAGA-CGA-G---GTTGGGTAGTTAAAcatatctggcagctctctcttctgaaccatctccagcttgtgtgtctggtccttggtttacaggttccagactgtggaacagtactcaaggtttggtcgcacaagtgttctgtaggacgtacccttaacctcttcattgttgatatgtagattgagccgaaggaagccgagcatgctgttgctctttttcacagtcttgtcaatatggtagtttcatgagaggttctggaataagtgtagtgcatatcaa
gi|21 : CATTGTACGTCGGCGCAGTCACACTTAACT----ATTACGCGAT-GGTGT---TCAAAGGTC
gi|22 : aaatgccatctactacagtatctgctgcagtttttaacttaggtCATCTACATTGTACGTCAACGCAGTCACACTTGACT----ATTACGCGACGGG
gi|23 : tcaaagtgagtcaaagatagttctattatttctatgttttctaAGACTAGA--------------T-TT--TGCTAG--CC-CCTGCTTGAAGGATACTAAGTCGG-GGGG-C----TTCTGCAACAGTG----GCAGGCAG---
gi|24 : CCATGCCGTAATGCATGTAGTTAG-----------------------TG----------------------ACA-A-------GAAT-------GGATTTCTGTAATATGATCTGGATGTAGatgttcttgaataaatttg
gi|3 : acatcggtagacagataggtGTGG---TGCAAGTTCA--A-A--AAA---A-----GATGATGAAAGGATATACAGAAAGA-AAAAG---GTTGGATAGTTAAAA-GGTAGAAA---TAAGAACAATGTGTGTCCAGCTACGTTTTCGACTCTTCAACCCAAACTTCTC------CGGTTACGGTGGC---CACAGC--CGG----CGC-ATAAATGAGAATCG-----CTAGA---TA--------------CGTGTTGCATGACCCCT--AGACTAGAATA-------AGAGTAGTGGTGACAG--CC-C-TGCTTGAAAGATACCAAATA-A-GGGG-CCTCTTTCTGCAACATTG----GCAGGCAG---AC----------------------TT----------------------GCATACTGTTATAAATTTGTTTAGAATTTCTGTAACACGATGTGGATGTAGGCAGCTGGTGGAATTTCCTGG--AGTGGGAGGATCTTGAATGGCCCTGGGCTG----GGATGAAATACTGTCTG---GG-ATGTCCAACAATGTCGTTGGTATTCAC-GAACATCATGGTCAGCTGGACTT----TG------GTCCGACGGGATTCCA-TGTCTCCCATCCAAGGTGGCCGAAC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--A----TGTTGGTCA
gi|4 : cacaATCTACATCGTACGTCGAC--AGTCACACTTGACT----ATTACGAGACGGGTGG---TGCAAGGTCA--A-A--AAG---AGA---TAT--TGAAA------------AGA-AGA-G---GTTGGATAGTTAAAA-A-TAGAAAG--TAGGAATAAAGTGTGTCCAGCTATGTTTTCACCTCTTCAACCCAGTCCTCTT------CGGTTACGGTGGC---CGCGGC--TGG----CAC-AGCAAAGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCTTACAAACTAAAATA---------AGT-GT--TGATAGC-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-TG---TGCTGCT-C-CCG----GCAGGTAG---GCTGTTCCATACTAAAGTTGTTCGTG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTTGAGGGCTGGTGGAATTACCTGG--AGTGGAAGGATCTTGTATGTCCCTGGGCTG----GGGTGAGGTACTGGCTGACTGGTATGTCC-ACAAGGTCTTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCAATGAGATTCTAGTGTCTCCCATCCCAGTTGGTCTAGC------ATGG-------------AGAAGACACTACTGGTGTTGTAATATATCTGTCGGTCAtatatcgggcagctctcttctgtattggccattgtatactggcatactgagacacatctaaagaatggttgatttcgggcaaactttatttt
gi|5 : atctatCATCTACATTGTACGTCTACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAGGAATAAAGTGTGTCCAGCTACGTTTTCACTTCTTTAACCCAGTCCTCTC------TGGATACGGTGGC---C-CAGC--CGG----CAC-AGCAATGGGAATCA----------AACTA--------------TTTGTTGCTGGACCCCTACGAACTAGAATA-------AGA-T-GT--TGATAG--CC-C-TGCTTGAGGGATACCAAGTC-A-GGGG-C----GTCTGCTAGGCTG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTGTAGGGCTGGAGGAATTTCCTGG--AGTGGGAGGATCTTCTATGTCCTTGGGTTG----GGGTGAGGTACTGGCAGACTGGTATGTCC-ACAAAGTTGTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGTTGATCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCAc
gi|6 : TCACACTTGA-------TTACGCGACGGGTGG---TGCAAGGTCA--A-G--AAA---A-----GAT--TGAAAGGAT-GACAGTAAGA-AGA-T---GTTGGATAGAAAAAACGGTAAAAAAAATAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTA------CGGTTATGGTGGC---CGCGGC--CGG----CAC-AGCAATGTGAATCA-----CTAGAAACGA--------------CGTGTTGCTGGTTCCC----------AAT---------GGAT-GT--TGATAG--CC-CCTGCTTGAAGGATACCTGCTC-A-GGGG-C----TTTTGCTACGCCG----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTCCGTAGAA-A-------GAAT-------GATTTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCGTGTATGTCCCCGAGCGG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATTACGGTCAGCTGGGCTT----TG------ATCCGACGAGATTCTAGTGTCTTCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACATTGCTGGTGTTGTG--ATAT
gi|7 : TCTACATCGTATGCCGACACAGTCACACTTGACT----ATTACACAACAGGTGG---TGCAAGGTCA--G-ACAAAA---G-----TAA--TGAAAGGATAAACAGTAAGA-AGG-G---GTTGGATAGTTAAAA-TGTAGAAA---TAAGAATAATGTGTGTCCAGCTACGTTTACGCCCCTTCAACCCAGTCCATTT------CAGTTACAGCGGC---CGCGGC--CAG----CAC-AGCAATGGGAATCA-----TTAGAAACTA--------------CTTGTTGTTGGA-CCCTGCAGACTAGAATA-------ACAGT-AT--TGATAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----GTCTGCTACATCG----GCAGGTAG---GCTGTTCCATACTGAAGTTGTTTGTG----------------------GAA-A-------GAAT-------GAATTTCTGTAGCATGATGTGGTTGTACAGGACTGGCGAAATTTCCTGG--A-TGTGAGGATCTTGTATGTTCCTGGGCTT----GGG-GAAATACTGGCTGACTGGTATGTCC-ACAAa
gi|8 : CATCTACATCATACAGCAACGCAGTCACACTTGACT----ACT----------TAG---------------A-A--AAG---A-----TAA--TGAAATTATATAAAGTAATA-AGA-G---GTTGGATAGTTAAAA-GGTA-AAAA--TAAGAATAAAGTGTATCCAGCTACGTTTTTG--------GCCCAGTCCTCTC------AAGTTATGGTGGC---TGC------------CGC-AGCAACAGGAATCATATCACTAGAAACTA--------------CTTGTTGCTGGACGCCTACAGACTAGAATG-------AGAGT-GG--TGACAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCAACACCA----GCAGACAG---GCAGTCCCATACTGTAGAAGTTTGTG----------------------GAA-A-------CAAT-------GAATTCTTGTAATATGATGTTGTTGTACATGACTGGCGGAATTTCCTGGACAGTAAGAGGATCTGGTATGGCCTTGGGCTG----TGGTGAAATACTGGCAAGCTGGGATGTCC-ACAAGGTTGTT
gi|9 : ACT----ATTATGCGACGGGTGG---TGCAAGGTCATGA-A--AAT---A-----TAT--TGAAAGGATAGACAGTTAGA-AGA-T---CTTGGGTAGTTAAAC-GGTAGAAAG--TAGGAATAAAGTATGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCACTAGNNNNNNNNNNNN-----NNNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGT-GT--TGATAG--CC-CCTGCTTGAAGGATACCAAGTC-A-GGGG-T----TTCTGTTACGCCA----GCAGGTAG---GC----------------------TGTTCCATACTGAAGTTGTTCGTGGAA-A-------GAAT-------GAGTTTCTGTAGTATGATGTGGATGTAGAGATTTAGCGGAATTTCCTGG--AGTGGGAGGATTT
blockSeqs : T TAAT ACA T TG G CA AATATAT T A GTT G AAA CGGTTA CGG AA GAAT T TATCA . NNNNNNNN A GG GC T C G . G CTCT A A TAAT TTA TGTTCCATACTGAAGTTGTTGGTG T CTGTTAT TTGTTTA AC . G T A . . . . . AT
blockSeqs : A . . A . G . AGATAT . . . C A . . . . . . . A . . C G C G . . G T G . . TGTTCCATACTAAAGTTGTTCGTG . . . . . A G . . . . . . .
blockSeqs : A . . A . G . CTATAT . . . . A . . . . . . . A . . G . C . . . . T G . . TGTTCCATACTGAAGTTGTCCGTA . . . . . A T . . . . . . .
blockSeqs : C . . T . . . ATATAA . . . . A . . . . . . . A . . C . . . . . . A A . . TGTTCCATACTGAAGTTGTTTGTG . . . . . A T . . . . . . .
blockSeqs : G . . T . . . ATATAA . . . . G . . . . . . . G . . T . . . . . . C G . . AGTCCCATACTGTAGAAGTTTGTG . . . . . A T . . . . . . .
blockSeqs : G . . C . . . AGATGA . . . . G . . . . . . . A . . T . . . . . . A A . . TGTTCCATACTGAAGTTGTTCGTG . . . . . A T . . . . . .
blockSeqs : G . . A . . . AGATAT . . . . A . . . . . . . A . . . . . . . . . T G . . TG . . . . . G G .
blockSeqs : A . . T . . . AAAG . . . . G . . . . . . . A . . . . . . . . . T G . . TG . . . . . . . .
blockSeqs : G . . A . . . ATAT . . . . . . . . . . . . A . . . . . . . . . T A . . TG . . . .
blockSeqs : G . . A . . . AGAT . . . . . . . . . . . . A . . . . . . . . . T A . . TT . . .
blockSeqs : G . . A . . . GTAA . . . . . . . . . G . . . . . . . . . A G . . TG
blockSeqs : A . . A . . . ATAA . . . . . . . . . . . T . . .
blockSeqs : G . . A . . . ATAT . . . . . . . . .
blockSeqs : . . . A . . . GTA
blockSeqs : . . . A . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : ATAT********** G** ************** TGTTCCATACTGAAGTTGTTCGTG********************** ******* **** **** ****** ****** *************
originalCons : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A-----TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAA--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GC----------------------TG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
finalCons : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAAATAT----------TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCG----GCAGGTAG---GCTGTTCCATACTGAAGTTGTTCGTG----------------------GAA-A-------GAAT-------GAATTTCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ACAGGTAAAACAAGATGCTAATTAATTCATTTATTCAACAGTAACATATAGA
Alignments
lowQualScore : 11111111111 111 11111111111111 11 1111 111111 1111 111111 111111 3333333333333
lowQualScore : 4 4444 333 1 33 9999 22222222222 1 2 2 555 66 999 0 999999 555 55 7777 3 88888 99999999999999 99999999 2 33 88 8 8 6 3 3 0000 1 2 3 1 111111 3 3 3 0 55 9999 1 4 4 5 0 2222 666666 0 0 666666 1111111111111 99
lowQualScore : . .... ... . .. .... ........... . . . ... .. ... . ...... ... .. .... . ..... .............. ........ . .. .. . . . . . .... . . . . ...... . . . . .. .... . . . . . .... ...... . . ...... ............. ..
lowQualScore : 4 7777 999 4 44 4444 44444444444 4 9 9 000 33 444 8 666666 888 00 7777 3 33333 66666666666666 44444444 9 99 22 6 6 2 1 3 4444 0 2 1 7 888888 1 8 3 7 55 4444 4 4 4 7 7 1111 444444 7 1 444444 4444444444444 22
consensus : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A--TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCTACGCCGGCAGGTAGG-CTGTTCCATACTG-----NA-GTTGTTCGTGGAAAGAATGAATT-TCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
Reference ( family-2238 ) : CATCTACATCGTACGTCGACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A--TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTC------CGGTTACGGTGGC---CGCGGC--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAGACTAGAATA-------AGAGT-GT--TGATAG--CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCNACGCCGGCAGGTAGG-CTGTTCCATACTG-----AA-GTTGTTCGTGGAAAGAATGAATT-TCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCTTGTATGTCCCTGGGCTG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATCACGGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCA
gi|1 : CAT-TACAT--TATGTTGACACAGTCACACTTGACT----TTTATGCGACAGGTGG---TG----GTCA--A-----AA---A---------AAAAGAT------TATGA-A---------TGG------------GTAGACAG--TAAGAA--AAG--------GCTG-------G-------AACCCACTCCCATC------CAGTTGTGGTGAC---CCTGGT--TGT----CAC-AGCAATGGGAAT-A-----CTAGAAACTACTTGGTGTAAACTACTTGTTGGTGGACCCCTACAAACTAGAATG-------AGAAT-GG--TGATGG--GCAC-TGCTTGAAGGATACCAATTT-TTGGGG-C----TTCTGCAACATCAGCAGGCAGG-CTGTTCCATACTG-----TA-GTAATTTGTGGAAAGAATG---------TAATATGATGTTGATGTAGACAGCTGGCGGAAATTCCTGG--AGTGAGAGGATCTAGTATGGCCCTGGGCAGTCCAGAGTGAGATACTGGCTAGCTGGGATGTCC-ACAAGGTCATTGGTGATCTTAAAATATCATGGTCTGCTGAGCTTTCAATGTCTACCATCCGTAGTGATTGTTGT-TGTCGTAT----GGT-GTTTAGCGACGCTATGGTGGTCTAACATGGAGGAGACACTACTGGTGTTGTG--ATATCTGTTGG
gi|10 : cactaaccatatcagctcaacaaatattttattacttcaaatggacctaaagaagcaatgtgttgcttctattatgcatctacatgatCATCTACATCATACATTGACTCGGTCACACTTGACT----ATTACATGGCCGGTGG---TGCTAGTT----A-A--AAA---G--TA----GAAA
gi|10 : ctcttttctatagttccttgccttaacattaacatttaattacacttttTAGTTAAAA-AGTAGAAA---TAAGAATAAAATGTGTCCAGATAAGTTTT-GCCTCTTCAGCCGAGTCCTCTC------TGGTAACAGTGGC---CGAGGT--CGG----CAC-AGCAATGGGAATCA-----CTAGAAACTG----------------TGTGGCTGGACGCCTACAGACTAGAATA-------AGAGT-TG--TGACAG--CCTC-TGCTTGAAGAATACCAAGTCGG-GGGG-C----TTCTGCAACATCAGCAGGCAGA-CTGTTCCAAACTG-----CA-CATA---GTAGAAAGAATTAATtaagaataaaatgtgtccagataagttttgcctcttcagccgagtcctctctggtaacagtggccgaggtcggcacagcaatgggaatcactagaaactgtgtggctggacgcctacagactagaataagagttgtgacagcctctgcttgaagaataccaagtcggggggcttctgcaacatcagcaggcagactgttccaaactgcacatagtagaaagaattaatgaaagaatgcagcaaaatg
gi|11 : ctcttttctatagttccttgccttaacattaacatttaattacacttttcatctacatcatacattgactcggtcacacttgactattacatggccggtggtgcCATCTACATCGTACATCGACACAGTCACACTTGACT----ATTACAGGAGGGGCGG---TGCATGGTCA--A-gaaagaatgcagcaaaatg
gi|11 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttaAAGTGTGTC-AGCTACCTTTTTGTCTCTTCAACCCATTCCTCTC------CGGTTGCAGTGGC---AGCGAC--CGG----CAC-AACAATGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCCTACAAACTAGAATA-------AGAGT-GT--TGATAGC-CC-C-TGCTTGAAGGACACCAAGTC-A-GGTG-T----GTCTGCTAGGGCGGCAGGTTGG-CTGTTCCATACAA-----TA-ATCACTC-----AACAATTAATTGTATGGAGTAAAATGTgtgtgtcagctacctttttgtctcttcaacccattcctctccggttgcagtggcagcgaccggcacaacaatgggaatcactagaaactacttgttgctggacccctacaaactagaataagagtgttgatagcccctgcttgaaggacaccaagtcaggtgtgtctgctagggcggcaggttggctgttccatacaataatcactcaacaattaattgtatggagtaaaatgt
gi|12 : ctactttactacaacgttactccatcatgccaacctgtcacatttttaagtttacatctacatcgtacatcgacacagtcacacttgactattacaggaggggcggtgcatggtcTACAGACTAGAATA-------AGAGT-GT--TGATAG--CCGC-TGCTTGAAGGA
gi|12 : -GCTGCTTGAAGGAAAAATGGATT-TCTGTATAATAAAGTTGATTTAGAGGGCTGG---AATTTCCTCG--AGTGGGAGGATCTTGTATGTTCCTGGGCTG----GGGTGAAATACTGGCTGGCTGGTGTGTCC-ACAAGGTCGTTGGCGATTTT-GAGCATCACCGTCAGCTAGGCTT----TG------GTCCGACGAGCTTGTAGTGTCTCCCATCCCAGGTGG--TAGT------ATGA-------------GGGaaaatggatttctgtataataaagttgatttagagggctggaatttcctcgagtgggaggatcttgtatgttcctgggctggggtgaaatactggctggctggtgtgtccacaaggtcgttggcgattttgagcatcaccgtcagctaggctttggtccgacgagcttgtagtgtctcccatcccaggtggtagtatgagggct
gi|13 : tacagactagaataagagtgttgatagccCATCTACATTATACGTCGACACAGTCACACTTGACT----ATTACTTGATGGGTGG---TGCAAGGTTA--A-G--AAG---AGATAT--TGAAAGGATAGACAGTAAGA-AAA-G---GTTGGATAGTTAAAA-GGTAGGAAA--TAGGAATTAAGTGTGTCCAGCTAAGTTTTCACCTCTTCAACCCAGTCCTCTC------CGGTTATGATGGC---CGCct
gi|14 : aaataacaagactgacaaaaaaattgtatcactaaaatgttctaTTGATTAGTTAAAAGGGTAGAAA---TAAGAATAAAGTGTGTCCAGCTACTTTTTCACCTCTTCAACCCAAACCTCTC------TGGTTGTGGTGGC---CGTGGC--TGG----CAC-AGCAATGGGAATCA-----CTAGAGACTA--------------CATGTTGCTAGACCCCTACAGACTAGAATG-------AGAGT-GG--TGACAGGCCC-C-TGCTTGAAAGATACCAAGTC-A-GAG
gi|15 : CATTTGCATGATACATCAACCAAATCACACTTGACT----ATTACACGACAGGTGG---CGCTATGCCA--AGA--AAA---A--AAG--TG--AGAATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAC-TATA-AACA--TAAGAATAAAATATGTCCAGCTACGTTTTCGCCTCTTC
gi|16 : aatatatctaCATCTACATTATACGTGGACGCAGTGACACTTGACT----ATGAGACGACGGGTGG---TGCTAAGTGA--A-G--AAACT-A--TAT--TGAAAGGATAGGCAGT---T-AGA-G---GTTGGATAGT---AA-TGTAG
gi|17 : ggctactagtaagcgacaaaatcactgatagtccacggtctaATCTACATCATACATCGAC--AGTCACACTTGATT----ATTACATGAGGAGTGGACATGCCAGGTCA--AGA--AAA---A--TATAATAAAAGGATAAATAG-AAGATAGA-GGTTGTTGGATAGTTAgga
gi|18 : aaaaaaatggtaatcatctaaagttcatttacatctatATCTAAATCGTACGTCCACGCAGTCACACTGGACT----ATTATGGCATGGGTGG---TGta
gi|19 : acattagatatgtttaggatagtttcaatattgaaatgcacattgcataatatttacatttttCATTCACATCATACGTCAACGCAGTCACACTTGACT----ATTACACGACGGGTGG---TGCAAGGTCA--A-G--AAAAATA--TAT--TGAAAAGATCGACAGTAAGA-AGA-A---GTTGGATAatgttaatacagacaaagggggtaat
gi|2 : ttagattaatagtagttgcttgacagctacatctaC-AGCAATGGGAATCG-----CAAGAAACTA--------------CTTGTTGCTGGACCCCTACGGACTAGAATA-------ACAGT-GT--TGATAGG-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGGGC----TTCTGCTACGCTGGCAGGTAGG-CTGTTCCATACTG-----AA-GTTGTTGGTGGAAAGAATTAATT-TCT-TAGTATGATGTGGTTGTAGAGGGCTGGCGGAATTTCCTCG--AGTGGGAAGATTTTTTATGTCGCTACGCTA----TGGTGAAATACTGACTGACTGGGATGTCC-ACAAGGTCGTTGGTGATCTT-GAACATCAGGTTCAGCTGGGCTT----TG------GTCCGACAAGATTCTAGTGTCTCCAATCCCGGTTGGTCTGAC------ATGG-------------AGGAGACACTGCTGGTGTTGCG--ATATCTGTTGGTCA
gi|20 : tgCTACATCATGCACCAACACAGTCATACTTGACTTAATATTACATGACCCATGG---TGCTAGGTCA--AGA--AAA---A--TATAATGAAAGGATAGACAGTAAGA-CGA-G---GTTGGGTAGTTAAAcatatctggcagctctctcttctgaaccatctccagcttgtgtgtctggtccttggtttacaggttccagactgtggaacagtactcaaggtttggtcgcacaagtgttctgtaggacgtacccttaacctcttcattgttgatatgtagattgagccgaaggaagccgagcatgctgttgctctttttcacagtcttgtcaatatggtagtttcatgagaggttctggaataagtgtagtgcatatcaa
gi|21 : CATTGTACGTCGGCGCAGTCACACTTAACT----ATTACGCGAT-GGTGT---TCAAAGGTC
gi|22 : aaatgccatctactacagtatctgctgcagtttttaacttaggtCATCTACATTGTACGTCAACGCAGTCACACTTGACT----ATTACGCGACGGG
gi|23 : tcaaagtgagtcaaagatagttctattatttctatgttttctaAGACTAGA--------------T-TT--TGCTAG--CC-CCTGCTTGAAGGATACTAAGTCGG-GGGG-C----TTCTGCAACAGTGGCAGGCAGA--TGTTC
gi|24 : GACAGATAGGTCCATGCCGTAATG-----CATGTAGTTAGTGACAAGAATGGATT-TCTGTAATATGATCTGGATGTAGttgaataaatttg
gi|3 : acatcggtaGTGG---TGCAAGTTCA--A-A--AAA---A--GATGATGAAAGGATATACAGAAAGA-AAAAG---GTTGGATAGTTAAAA-GGTAGAAA---TAAGAACAATGTGTGTCCAGCTACGTTTTCGACTCTTCAACCCAAACTTCTC------CGGTTACGGTGGC---CACAGC--CGG----CGC-ATAAATGAGAATCG-----CTAGA---TA--------------CGTGTTGCATGACCCCT--AGACTAGAATA-------AGAGTAGTGGTGACAG--CC-C-TGCTTGAAAGATACCAAATA-A-GGGG-CCTCTTTCTGCAACATTGGCAGGCAGA-C--TTGCATACTGTTATAAA-TTTGTTTA----------GAATT-TCTGTAACACGATGTGGATGTAGGCAGCTGGTGGAATTTCCTGG--AGTGGGAGGATCTTGAATGGCCCTGGGCTG----GGATGAAATACTGTCTG---GG-ATGTCCAACAATGTCGTTGGTATTCAC-GAACATCATGGTCAGCTGGACTT----TG------GTCCGACGGGATTCCA-TGTCTCCCATCCAAGGTGGCCGAAC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--A----TGTTGGTCA
gi|4 : cacaATCTACATCGTACGTCGAC--AGTCACACTTGACT----ATTACGAGACGGGTGG---TGCAAGGTCA--A-A--AAG---AGATAT--TGAAA------------AGA-AGA-G---GTTGGATAGTTAAAA-A-TAGAAAG--TAGGAATAAAGTGTGTCCAGCTATGTTTTCACCTCTTCAACCCAGTCCTCTT------CGGTTACGGTGGC---CGCGGC--TGG----CAC-AGCAAAGGGAATCA-----CTAGAAACTA--------------CTTGTTGCTGGACCCTTACAAACTAAAATA-------AG--T-GT--TGATAGC-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-TG---TGCTGCT-C-CCGGCAGGTAGG-CTGTTCCATACTA-----AA-GTTGTTCGTGGAAAGAATGAGTT-TCTGTAGTATGATGTGGATGTTGAGGGCTGGTGGAATTACCTGG--AGTGGAAGGATCTTGTATGTCCCTGGGCTG----GGGTGAGGTACTGGCTGACTGGTATGTCC-ACAAGGTCTTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCAATGAGATTCTAGTGTCTCCCATCCCAGTTGGTCTAGC------ATGG-------------AGAAGACACTACTGGTGTTGTAATATATCTGTCGGTCAtatatcgggcagctctcttctgtattggccattgtatactggcatactgagacacatctaaagaatggttgatttcgggcaaactttatttt
gi|5 : atctatCATCTACATTGTACGTCTACGCAGTCACACTTGACT----ATTACGCGACGGGTGG---TGCAAGGTCA--A-A--AAA---A--TAT--TGAAAGGATAGACAGTAAGA-AGA-G---GTTGGATAGTTAAAA-GGTAGAAAG--TAGGAATAAAGTGTGTCCAGCTACGTTTTCACTTCTTTAACCCAGTCCTCTC------TGGATACGGTGGC---C-CAGC--CGG----CAC-AGCAATGGGAATC----------AAACTA--------------TTTGTTGCTGGACCCCTACGAACTAGAATA-------AGA-T-GT--TGATAG--CC-C-TGCTTGAGGGATACCAAGTC-A-GGGG-C----GTCTGCTAGGCTGGCAGGTAGG-C----------------------------TGGAAAGAATGAGTT-TCTGTAGTATGATGTGGATGTGTAGGGCTGGAGGAATTTCCTGG--AGTGGGAGGATCTTCTATGTCCTTGGGTTG----GGGTGAGGTACTGGCAGACTGGTATGTCC-ACAAAGTTGTTGGCGATCTT-GAACATTACTGTCAGCTGGGCTT----TG------GTCCGACGAGATTCTAGTGTCTCCCATCCCAGTTGATCTAGC------ATGG-------------AGGAGACACTGCTGGTGTTGTG--ATATCTGTTGGTCAc
gi|6 : TCACACTTGA-------TTACGCGACGGGTGG---TGCAAGGTCA--A-G--AAA---A--GAT--TGAAAGGAT-GACAGTAAGA-AGA-T---GTTGGATAGAAAAAACGGTAAAAAAAATAAGAATAAAGTGTGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTA------CGGTTATGGTGGC---CGCGGC--CGG----CAC-AGCAATGTGAATCA-----CTAGAAACGA--------------CGTGTTGCTGGTTCCC----------AAT---------GGAT-GT--TGATAG--CC-CCTGCTTGAAGGATACCTGCTC-A-GGGG-C----TTTTGCTACGCCGGCAGGTAGG-CTGTTCCATACTG-----AA-GTTGTCCGTAGAAAGAATGATTT-TCTGTAGTATGATGTGGATGTAGAGGGCTGGCGGAATTTCCTGG--AGTGGGAGGATCGTGTATGTCCCCGAGCGG----GGGTGAAATACTGGCTGACTGGTATGTCC-ACAAGGTCGTTGGCGATCTT-GAACATTACGGTCAGCTGGGCTT----TG------ATCCGACGAGATTCTAGTGTCTTCCATCCCAGGTGGTCTAGC------ATGG-------------AGGAGACATTGCTGGTGTTGTG--ATAT
gi|7 : TCTACATCGTATGCCGACACAGTCACACTTGACT----ATTACACAACAGGTGG---TGCAAGGTCA--G-ACAAAA---G--TAA--TGAAAGGATAAACAGTAAGA-AGG-G---GTTGGATAGTTAAAA-TGTAGAAA---TAAGAATAATGTGTGTCCAGCTACGTTTACGCCCCTTCAACCCAGTCCATTT------CAGTTACAGCGGC---CGCGGC--CAG----CAC-AGCAATGGGAATCA-----TTAGAAACTA--------------CTTGTTGTTGGA-CCCTGCAGACTAGAATA-------ACAGT-AT--TGATAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----GTCTGCTACATCGGCAGGTAGG-CTGTTCCATACTG-----AA-GTTGTTTGTGGAAAGAATGAATT-TCTGTAGCATGATGTGGTTGTACAGGACTGGCGAAATTTCCTGG--A-TGTGAGGATCTTGTATGTTCCTGGGCTT----GGG-GAAATACTGGCTGACTGGTATGTCC-ACAAa
gi|8 : CATCTACATCATACAGCAACGCAGTCACACTTGACT----ACT----------TAG---------------A-A--AAG---A--TAA--TGAAATTATATAAAGTAATA-AGA-G---GTTGGATAGTTAAAA-GGTAAAAA---TAAGAATAAAGTGTATCCAGCTACGTTTTTG--------GCCCAGTCCTCTC------AAGTTATGGTGGC---TGC------------CGC-AGCAACAGGAATCATATCACTAGAAACTA--------------CTTGTTGCTGGACGCCTACAGACTAGAATG-------AGAGT-GG--TGACAGT-CC-C-TGCTTGAAGGATACCAAGTC-A-GGGG-C----TTCTGCAACACCAGCAGACAGG-CAGTCCCATACTG-----TA-GAAGTTTGTGGAAACAATGAATT-CTTGTAATATGATGTTGTTGTACATGACTGGCGGAATTTCCTGGACAGTAAGAGGATCTGGTATGGCCTTGGGCTG----TGGTGAAATACTGGCAAGCTGGGATGTCC-ACAAGGTTGTT
gi|9 : ACT----ATTATGCGACGGGTGG---TGCAAGGTCATGA-A--AAT---A--TAT--TGAAAGGATAGACAGTTAGA-AGA-T---CTTGGGTAGTTAAAC-GGTAGAAAG--TAGGAATAAAGTATGTCCAGCTACGTTTTCGCCTCTTCAACCCAGTCCTCTCCGGTTACGGTGGCCGCGGCCGGCACAGCAATGGGAATCACTAGNNNNNNNNNNNN-----NNNNNNNNNN--------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGT-GT--TGATAG--CC-CCTGCTTGAAGGATACCAAGTC-A-GGGG-T----TTCTGTTACGCCAGCAGGTAGG-CTGTTCCATACTG-----AA-GTTGTTCGTGGAAAGAATGAGTT-TCTGTAGTATGATGTGGATGTAGAGATTTAGCGGAATTTCCTGG--AGTGGGAGGATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ACAGGTAAAACAAGATGCTAATTAATTCATTTATTCAACAGTAACATATAGA